arxiv_id title date categories primary_category url pop_rel nn_sim judged novelty fused needle 2608.09222 Reading Cognition as Decisions Unfold in Words: A Factorized Inverse Decision Model 2026-08-10 cs.CL;q-bio.NC q-bio.NC https://arxiv.org/abs/2608.09222 False False 2608.09399 Ancient DNA in motion: Studying past human mobility and interactions by integrating archaeogenetics and archaeology 2026-08-10 q-bio.PE q-bio.PE https://arxiv.org/abs/2608.09399 False False 2608.09460 Flow-based conditional cardiac anatomy generation for virtual cohorts 2026-08-10 cs.CV;cs.LG;q-bio.QM;q-bio.TO q-bio.QM https://arxiv.org/abs/2608.09460 False False 2608.09773 Graph Analysis of Neuronal-Culture Connectivity Derived from a Reservoir-Computing Model 2026-08-10 physics.comp-ph;q-bio.NC q-bio.NC https://arxiv.org/abs/2608.09773 False False 2608.08375 Algebraic formulas for first-passage times of Markov processes in the linear framework: generalising the work of Hill and Kac 2026-08-09 math.PR;q-bio.QM q-bio.QM https://arxiv.org/abs/2608.08375 False False 2608.08571 A General Theory for Phenotypic Association in Biological Systems 2026-08-09 physics.bio-ph;q-bio.MN q-bio.MN https://arxiv.org/abs/2608.08571 False False 2608.08816 Physical limits to concentration and gradient sensing by perfect monitors 2026-08-09 math.MP;math.PR;math.ST;physics.bio-ph;physics.class-ph;physics.math-ph;q-bio.CB;stat.TH q-bio.CB https://arxiv.org/abs/2608.08816 False False 2608.08916 Approximate Analytical Protein Distributions for the Three-stage Model of Stochastic Gene Expression 2026-08-09 q-bio.MN;q-bio.QM q-bio.MN https://arxiv.org/abs/2608.08916 False False 2608.08958 Idea Search: Guiding Tree Search with Ideas to Explore Diverse Scientific Methods 2026-08-09 cs.AI;cs.LG;q-bio.GN;q-bio.QM q-bio.GN https://arxiv.org/abs/2608.08958 False False 2608.07865 MAPK Pathway Activity and Heme Biosynthesis Gene Expression in IDH-Wildtype Glioblastoma: A Purity-Adjusted, Discovery-Validation Analysis 2026-08-08 q-bio.GN;q-bio.MN;q-bio.QM q-bio.GN https://arxiv.org/abs/2608.07865 False False 2608.08074 Low-frequency output fluctuations in an open exclusion process with particle pausing 2026-08-08 physics.stat-mech;q-bio.SC q-bio.SC https://arxiv.org/abs/2608.08074 False False 2608.08165 Predicting blood clot growth from sparse post-onset measurements with latent neural differential equations 2026-08-08 cs.LG;q-bio.QM;q-bio.TO q-bio.QM https://arxiv.org/abs/2608.08165 False False 2608.08173 $\texttt{DisMorph}$: learning to disentangle technical distortions from true biological change 2026-08-08 cs.AI;eess.IV;q-bio.QM q-bio.QM https://arxiv.org/abs/2608.08173 False False 2608.08206 Sensorimotor features of a reversal learning task bias decision behavior without disrupting individual difference structure 2026-08-08 q-bio.NC q-bio.NC https://arxiv.org/abs/2608.08206 False False 2608.08366 VOICE: A Vision-Omics Foundation Model Integrating Direct and Retrieval-Based Prediction of In-situ Single-Cell Gene Expression 2026-08-08 cs.CV;q-bio.GN q-bio.GN https://arxiv.org/abs/2608.08366 False False 2608.06779 Genotypic Triggers: Exposing Pharmacogenomic Blind Spots via Host-Specific Backdoors in Generative Antimicrobial Peptide Models 2026-08-07 cs.AI;cs.CL;q-bio.QM q-bio.QM https://arxiv.org/abs/2608.06779 False False 2608.06824 Control-Anchored Residual Flow Matching Conditioned on Gene Geometry for Virtual Cell Perturbation Modeling 2026-08-07 cs.AI;q-bio.MN q-bio.MN https://arxiv.org/abs/2608.06824 False False 2608.06998 Simulating is not always understanding: When model complexity obscures biology 2026-08-07 physics.bio-ph;q-bio.MN q-bio.MN https://arxiv.org/abs/2608.06998 False False 2608.07092 International Transfer of Stochastic Cortical Self-Reconstruction 2026-08-07 cs.AI;cs.CV;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2608.07092 False False 2608.07250 Artificial Intelligence Can Match Domain Experts in Evidence Extraction and Critical Appraisal of Microbial Oncogenesis Research Publications 2026-08-07 cs.AI;cs.CL;q-bio.QM q-bio.QM https://arxiv.org/abs/2608.07250 False False 2608.07344 muxvizpy: a Python library for the analysis of multilayer biological networks 2026-08-07 q-bio.MN;q-bio.QM q-bio.MN https://arxiv.org/abs/2608.07344 False False 2608.07393 FedDOSE: Federated Learning Framework Decomposing Site Effects for Modeling Brain Dynamic Functional Connectivity 2026-08-07 cs.LG;eess.SP;q-bio.NC q-bio.NC https://arxiv.org/abs/2608.07393 False False 2608.06779 Genotypic Triggers: Exposing Pharmacogenomic Blind Spots via Host-Specific Backdoors in Generative Antimicrobial Peptide Models 2026-08-07 cs.AI;cs.CL;q-bio.QM q-bio.QM https://arxiv.org/abs/2608.06779 False False 2608.06824 Control-Anchored Residual Flow Matching Conditioned on Gene Geometry for Virtual Cell Perturbation Modeling 2026-08-07 cs.AI;q-bio.MN q-bio.MN https://arxiv.org/abs/2608.06824 False False 2608.06998 Simulating is not always understanding: When model complexity obscures biology 2026-08-07 physics.bio-ph;q-bio.MN q-bio.MN https://arxiv.org/abs/2608.06998 False False 2608.07092 International Transfer of Stochastic Cortical Self-Reconstruction 2026-08-07 cs.AI;cs.CV;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2608.07092 False False 2608.07250 Artificial Intelligence Can Match Domain Experts in Evidence Extraction and Critical Appraisal of Microbial Oncogenesis Research Publications 2026-08-07 cs.AI;cs.CL;q-bio.QM q-bio.QM https://arxiv.org/abs/2608.07250 False False 2608.07344 muxvizpy: a Python library for the analysis of multilayer biological networks 2026-08-07 q-bio.MN;q-bio.QM q-bio.MN https://arxiv.org/abs/2608.07344 False False 2608.07393 FedDOSE: Federated Learning Framework Decomposing Site Effects for Modeling Brain Dynamic Functional Connectivity 2026-08-07 cs.LG;eess.SP;q-bio.NC q-bio.NC https://arxiv.org/abs/2608.07393 False False 2608.07632 JUMP-lite: Compact, reproducible benchmarking of cell representations 2026-08-07 cs.CV;eess.IV;q-bio.QM q-bio.QM https://arxiv.org/abs/2608.07632 False False 2608.07777 Nuclear mechanics controls the temporal dynamics of cell unjamming 2026-08-07 physics.bio-ph;q-bio.CB q-bio.CB https://arxiv.org/abs/2608.07777 False False 2608.07790 Permutation theory governs long-term dynamics of critical Boolean networks 2026-08-07 physics.bio-ph;q-bio.MN q-bio.MN https://arxiv.org/abs/2608.07790 False False 2608.05481 From Local Learning to Global Prediction Through Layered Surprise Cascades 2026-08-06 q-bio.NC q-bio.NC https://arxiv.org/abs/2608.05481 False False 2608.05491 A Quantum Circuit Framework for Protein Ensemble-Level Energetics 2026-08-06 cs.ET;q-bio.BM;q-bio.MN q-bio.BM https://arxiv.org/abs/2608.05491 False False 2608.05635 Transcutaneous Spinal Cord Stimulation Disrupts Conscious Ankle Proprioception and Produces a More Constrained Locomotor Pattern in Unimpaired Adults 2026-08-06 cs.RO;q-bio.NC q-bio.NC https://arxiv.org/abs/2608.05635 False False 2608.05658 Two base rates, two weights: base-rate neglect has a second axis 2026-08-06 q-bio.NC;stat.AP;stat.ME q-bio.NC https://arxiv.org/abs/2608.05658 False False 2608.05697 A Low-Power Wearable Respiratory Sensor for Non-Invasive Stress Monitoring 2026-08-06 cs.LG;eess.SP;q-bio.QM q-bio.QM https://arxiv.org/abs/2608.05697 False False 2608.05733 Multiparametric MRI Radiomics and Machine Learning Framework for Predicting Treatment Response in Glioblastoma 2026-08-06 q-bio.QM;stat.ME q-bio.QM https://arxiv.org/abs/2608.05733 False False 2608.05777 Curriculum Multiple Shooting for Robust Training of Neural and Universal Differential Equations 2026-08-06 q-bio.QM q-bio.QM https://arxiv.org/abs/2608.05777 False False 2608.05882 Complexity and Stability of Neural Activity Across Aging and Neurodegenerative Disease 2026-08-06 q-bio.NC q-bio.NC https://arxiv.org/abs/2608.05882 False False 2608.05982 THBKG: A Temporal Biomedical Knowledge Graph for Decision-Aligned Clinical Advancement Prediction 2026-08-06 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2608.05982 False False 2608.05985 Convergent Evolution in Algorithmic Space 2026-08-06 q-bio.NC q-bio.NC https://arxiv.org/abs/2608.05985 False False 2608.05996 Convergent Evolution in Neural Representation Space: Emergent Order in Deep Belief Networks 2026-08-06 cs.NE;q-bio.NC q-bio.NC https://arxiv.org/abs/2608.05996 False False 2608.06022 EpiBench: Can LLMs Understand Epitopes for Antibody Drug Discovery? 2026-08-06 cs.CL;q-bio.GN q-bio.GN https://arxiv.org/abs/2608.06022 False False 2608.06147 Simple evolution drives direct reciprocity to maximum payoff in social dilemmas 2026-08-06 q-bio.PE q-bio.PE https://arxiv.org/abs/2608.06147 False False 2608.06149 Errorless Irrationality: A unified computational account of the inverse base-rate effect across predictive, observational, and unsupervised procedures 2026-08-06 q-bio.NC q-bio.NC https://arxiv.org/abs/2608.06149 False False 2608.06360 PyOMES: an open-source framework for biochemical process modelling 2026-08-06 q-bio.QM q-bio.QM https://arxiv.org/abs/2608.06360 False False 2608.05481 From Local Learning to Global Prediction Through Layered Surprise Cascades 2026-08-06 q-bio.NC q-bio.NC https://arxiv.org/abs/2608.05481 False False 2608.05491 A Quantum Circuit Framework for Protein Ensemble-Level Energetics 2026-08-06 cs.ET;q-bio.BM;q-bio.MN q-bio.BM https://arxiv.org/abs/2608.05491 False False 2608.05635 Transcutaneous Spinal Cord Stimulation Disrupts Conscious Ankle Proprioception and Produces a More Constrained Locomotor Pattern in Unimpaired Adults 2026-08-06 cs.RO;q-bio.NC q-bio.NC https://arxiv.org/abs/2608.05635 False False 2608.05658 Two base rates, two weights: base-rate neglect has a second axis 2026-08-06 q-bio.NC;stat.AP;stat.ME q-bio.NC https://arxiv.org/abs/2608.05658 False False 2608.05697 A Low-Power Wearable Respiratory Sensor for Non-Invasive Stress Monitoring 2026-08-06 cs.LG;eess.SP;q-bio.QM q-bio.QM https://arxiv.org/abs/2608.05697 False False 2608.05733 Multiparametric MRI Radiomics and Machine Learning Framework for Predicting Treatment Response in Glioblastoma 2026-08-06 q-bio.QM;stat.ME q-bio.QM https://arxiv.org/abs/2608.05733 False False 2608.05777 Curriculum Multiple Shooting for Robust Training of Neural and Universal Differential Equations 2026-08-06 q-bio.QM q-bio.QM https://arxiv.org/abs/2608.05777 False False 2608.05882 Complexity and Stability of Neural Activity Across Aging and Neurodegenerative Disease 2026-08-06 q-bio.NC q-bio.NC https://arxiv.org/abs/2608.05882 False False 2608.05982 THBKG: A Temporal Biomedical Knowledge Graph for Decision-Aligned Clinical Advancement Prediction 2026-08-06 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2608.05982 False False 2608.05985 Convergent Evolution in Algorithmic Space 2026-08-06 q-bio.NC q-bio.NC https://arxiv.org/abs/2608.05985 False False 2608.05996 Convergent Evolution in Neural Representation Space: Emergent Order in Deep Belief Networks 2026-08-06 cs.NE;q-bio.NC q-bio.NC https://arxiv.org/abs/2608.05996 False False 2608.06022 EpiBench: Can LLMs Understand Epitopes for Antibody Drug Discovery? 2026-08-06 cs.CL;q-bio.GN q-bio.GN https://arxiv.org/abs/2608.06022 False False 2608.06147 Simple evolution drives direct reciprocity to maximum payoff in social dilemmas 2026-08-06 q-bio.PE q-bio.PE https://arxiv.org/abs/2608.06147 False False 2608.06149 Errorless Irrationality: A unified computational account of the inverse base-rate effect across predictive, observational, and unsupervised procedures 2026-08-06 q-bio.NC q-bio.NC https://arxiv.org/abs/2608.06149 False False 2608.06360 PyOMES: an open-source framework for biochemical process modelling 2026-08-06 q-bio.QM q-bio.QM https://arxiv.org/abs/2608.06360 False False 2608.05777 Curriculum Multiple Shooting for Robust Training of Neural and Universal Differential Equations 2026-08-06 q-bio.QM q-bio.QM https://arxiv.org/abs/2608.05777 False False 2608.06502 Vertex cover number of valued constraints is a structural parameter for efficient local search 2026-08-06 cs.DM;cs.DS;q-bio.PE q-bio.PE https://arxiv.org/abs/2608.06502 False False 2608.06552 Replacers and their evolutionary stability in the Moran process on graphs 2026-08-06 q-bio.PE q-bio.PE https://arxiv.org/abs/2608.06552 False False 2608.06624 An Entropy-based Coefficient of Determination with Adjustment of Optimization Bias 2026-08-06 cs.IT;math.IT;q-bio.GN;stat.ME q-bio.GN https://arxiv.org/abs/2608.06624 False False 2608.05777 Curriculum Multiple Shooting for Robust Training of Neural and Universal Differential Equations 2026-08-06 q-bio.QM q-bio.QM https://arxiv.org/abs/2608.05777 False False 2608.06502 Vertex cover number of valued constraints is a structural parameter for efficient local search 2026-08-06 cs.DM;cs.DS;q-bio.PE q-bio.PE https://arxiv.org/abs/2608.06502 False False 2608.06552 Replacers and their evolutionary stability in the Moran process on graphs 2026-08-06 q-bio.PE q-bio.PE https://arxiv.org/abs/2608.06552 False False 2608.06624 An Entropy-based Coefficient of Determination with Adjustment of Optimization Bias 2026-08-06 cs.IT;math.IT;q-bio.GN;stat.ME q-bio.GN https://arxiv.org/abs/2608.06624 False False 2608.07609 Hit Selection Using SSMD-Based Machine Learning Performance Metrics in High-Throughput Screening Assays 2026-08-06 cs.AI;q-bio.QM;stat.AP;stat.ML q-bio.QM https://arxiv.org/abs/2608.07609 False False 2608.07610 Exploiting chemical shift variability enables recovery of overlapping metabolites from 1H nuclear magnetic resonance spectra 2026-08-06 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2608.07610 False False 2608.04594 Traveling fronts in a spatial epidemic model with slow loss of immunity 2026-08-05 math.AP;math.DS;q-bio.PE q-bio.PE https://arxiv.org/abs/2608.04594 False False 2608.04616 An entropic explanation of insistence on sameness in autism 2026-08-05 cs.LG;q-bio.NC;stat.ML q-bio.NC https://arxiv.org/abs/2608.04616 False False 2608.04635 On the realizability of abstract reaction networks with real molecules and reactions 2026-08-05 q-bio.MN q-bio.MN https://arxiv.org/abs/2608.04635 False False 2608.04770 Poisson Flow and Wasserstein Registration of Trees 2026-08-05 q-bio.TO q-bio.TO https://arxiv.org/abs/2608.04770 False False 2608.04959 Parameter identification for predator-prey system with sparse data 2026-08-05 q-bio.PE;q-bio.QM;stat.ME q-bio.PE https://arxiv.org/abs/2608.04959 False False 2608.04594 Traveling fronts in a spatial epidemic model with slow loss of immunity 2026-08-05 math.AP;math.DS;q-bio.PE q-bio.PE https://arxiv.org/abs/2608.04594 False False 2608.04616 An entropic explanation of insistence on sameness in autism 2026-08-05 cs.LG;q-bio.NC;stat.ML q-bio.NC https://arxiv.org/abs/2608.04616 False False 2608.04635 On the realizability of abstract reaction networks with real molecules and reactions 2026-08-05 q-bio.MN q-bio.MN https://arxiv.org/abs/2608.04635 False False 2608.04770 Poisson Flow and Wasserstein Registration of Trees 2026-08-05 q-bio.TO q-bio.TO https://arxiv.org/abs/2608.04770 False False 2608.04959 Parameter identification for predator-prey system with sparse data 2026-08-05 q-bio.PE;q-bio.QM;stat.ME q-bio.PE https://arxiv.org/abs/2608.04959 False False 2608.05329 Frozen but Not Always Accessible: A Representation Analysis of Genomic Language Models 2026-08-05 q-bio.GN q-bio.GN https://arxiv.org/abs/2608.05329 False False 2608.05345 IL-10 rs1800896 polymorphism predicts biochemical remission in IBD patients undergoing biologic therapy 2026-08-05 q-bio.QM q-bio.QM https://arxiv.org/abs/2608.05345 False False 2608.05436 The ethics of artificial intelligence in the life sciences: Universality, cultural diversity and an architecture of care 2026-08-05 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2608.05436 False False 2608.05462 Toward a Dynamical Taxonomy of Insomnia: A Multiaxial Framework for Sleep-State Transitions and Architectural Failure 2026-08-05 physics.bio-ph;q-bio.NC q-bio.NC https://arxiv.org/abs/2608.05462 False False 2608.05464 Effective pruning of task-trained recurrent neural networks using noisy fluctuations and connection rescaling 2026-08-05 cs.LG;cs.NE;q-bio.NC q-bio.NC https://arxiv.org/abs/2608.05464 False False 2608.05329 Frozen but Not Always Accessible: A Representation Analysis of Genomic Language Models 2026-08-05 q-bio.GN q-bio.GN https://arxiv.org/abs/2608.05329 False False 2608.05345 IL-10 rs1800896 polymorphism predicts biochemical remission in IBD patients undergoing biologic therapy 2026-08-05 q-bio.QM q-bio.QM https://arxiv.org/abs/2608.05345 False False 2608.05436 The ethics of artificial intelligence in the life sciences: Universality, cultural diversity and an architecture of care 2026-08-05 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2608.05436 False False 2608.05462 Toward a Dynamical Taxonomy of Insomnia: A Multiaxial Framework for Sleep-State Transitions and Architectural Failure 2026-08-05 physics.bio-ph;q-bio.NC q-bio.NC https://arxiv.org/abs/2608.05462 False False 2608.05464 Effective pruning of task-trained recurrent neural networks using noisy fluctuations and connection rescaling 2026-08-05 cs.LG;cs.NE;q-bio.NC q-bio.NC https://arxiv.org/abs/2608.05464 False False 2608.05352 Joint Spatial and Temporal Generalized Dissimilarity Mixed Modeling (stGDMM) for Beta Diversity 2026-08-05 q-bio.PE;stat.AP;stat.ME q-bio.PE https://arxiv.org/abs/2608.05352 False False 2608.06430 MiGHT-EHR: A Multi-task Graph Transformer for Heterogeneous Temporal Electronic Health Records 2026-08-05 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2608.06430 False False 2608.05352 Joint Spatial and Temporal Generalized Dissimilarity Mixed Modeling (stGDMM) for Beta Diversity 2026-08-05 q-bio.PE;stat.AP;stat.ME q-bio.PE https://arxiv.org/abs/2608.05352 False False 2608.06430 MiGHT-EHR: A Multi-task Graph Transformer for Heterogeneous Temporal Electronic Health Records 2026-08-05 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2608.06430 False False 2608.07590 Uncertainty-Aware Missing-Data Multimodal Latent for Fetal-Growth Analysis 2026-08-05 q-bio.QM;stat.AP q-bio.QM https://arxiv.org/abs/2608.07590 False False 2608.03000 A Landau-Ginzburg Phenomenology of Sleep-Stage Transitions 2026-08-04 physics.bio-ph;q-bio.NC q-bio.NC https://arxiv.org/abs/2608.03000 False False 2608.03145 Spatial proteomics guided by H&E-based AI reveals recurrence-risk niches in triple-negative breast cancer 2026-08-04 cs.AI;q-bio.QM q-bio.QM https://arxiv.org/abs/2608.03145 False False 2608.03181 Persistent homology broadens the controllable subspace in human structural connectomes 2026-08-04 q-bio.NC;q-bio.QM q-bio.NC https://arxiv.org/abs/2608.03181 False False 2608.03364 Stochastic partial differential equation model for environmental DNA dynamics in river environments 2026-08-04 math.PR;q-bio.QM q-bio.QM https://arxiv.org/abs/2608.03364 False False 2608.03393 Active wetting/de-wetting of focal adhesions on viscoelastic substrates 2026-08-04 physics.soft;q-bio.SC q-bio.SC https://arxiv.org/abs/2608.03393 False False 2608.03541 Synergy and Complementarity: The Generative Basis of Chemical Organizations 2026-08-04 q-bio.MN q-bio.MN https://arxiv.org/abs/2608.03541 False False 2608.03544 Identifiability of phylogenetic networks and quintet concordance factors 2026-08-04 math.AG;q-bio.PE q-bio.PE https://arxiv.org/abs/2608.03544 False False 2608.03604 Population Structures with Positive Feedback and Asymmetric Division 2026-08-04 math.DS;q-bio.CB;q-bio.QM q-bio.CB https://arxiv.org/abs/2608.03604 False False 2608.03887 Omega-S: A Functional Resilience Index for LLM Fine-Tuning 2026-08-04 cs.LG;cs.NE;q-bio.MN q-bio.MN https://arxiv.org/abs/2608.03887 False False 2608.03000 A Landau-Ginzburg Phenomenology of Sleep-Stage Transitions 2026-08-04 physics.bio-ph;q-bio.NC q-bio.NC https://arxiv.org/abs/2608.03000 False False 2608.03145 Spatial proteomics guided by H&E-based AI reveals recurrence-risk niches in triple-negative breast cancer 2026-08-04 cs.AI;q-bio.QM q-bio.QM https://arxiv.org/abs/2608.03145 False False 2608.03181 Persistent homology broadens the controllable subspace in human structural connectomes 2026-08-04 q-bio.NC;q-bio.QM q-bio.NC https://arxiv.org/abs/2608.03181 False False 2608.03364 Stochastic partial differential equation model for environmental DNA dynamics in river environments 2026-08-04 math.PR;q-bio.QM q-bio.QM https://arxiv.org/abs/2608.03364 False False 2608.03393 Active wetting/de-wetting of focal adhesions on viscoelastic substrates 2026-08-04 physics.soft;q-bio.SC q-bio.SC https://arxiv.org/abs/2608.03393 False False 2608.03541 Synergy and Complementarity: The Generative Basis of Chemical Organizations 2026-08-04 q-bio.MN q-bio.MN https://arxiv.org/abs/2608.03541 False False 2608.03544 Identifiability of phylogenetic networks and quintet concordance factors 2026-08-04 math.AG;q-bio.PE q-bio.PE https://arxiv.org/abs/2608.03544 False False 2608.03604 Population Structures with Positive Feedback and Asymmetric Division 2026-08-04 math.DS;q-bio.CB;q-bio.QM q-bio.CB https://arxiv.org/abs/2608.03604 False False 2608.03887 Omega-S: A Functional Resilience Index for LLM Fine-Tuning 2026-08-04 cs.LG;cs.NE;q-bio.MN q-bio.MN https://arxiv.org/abs/2608.03887 False False 2608.04046 The Cost of Binarizing Survival Outcomes in Clinical Prognostic Modeling 2026-08-04 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2608.04046 False False 2608.04218 Time^2: A framework for the neural dynamics of visual perception 2026-08-04 q-bio.NC q-bio.NC https://arxiv.org/abs/2608.04218 False False 2608.04046 The Cost of Binarizing Survival Outcomes in Clinical Prognostic Modeling 2026-08-04 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2608.04046 False False 2608.04218 Time^2: A framework for the neural dynamics of visual perception 2026-08-04 q-bio.NC q-bio.NC https://arxiv.org/abs/2608.04218 False False 2608.05196 MS-MLB: An Open Machine Learning Benchmark for Blood-Based MS Classification 2026-08-04 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2608.05196 False False 2608.05196 MS-MLB: An Open Machine Learning Benchmark for Blood-Based MS Classification 2026-08-04 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2608.05196 False False 2608.03364 Stochastic partial differential equation model for environmental DNA dynamics in river environments 2026-08-04 math.PR;q-bio.QM q-bio.QM https://arxiv.org/abs/2608.03364 False False 2608.01773 NeuroWorld: A Latent Brain World Model for Stimulus-Conditioned Human Brain Dynamics 2026-08-03 q-bio.NC q-bio.NC https://arxiv.org/abs/2608.01773 False False 2608.01947 Divisive Normalization Shapes Low-Rank Slow Manifolds for Continuous Working Memory 2026-08-03 cs.AI;cs.NE;q-bio.NC q-bio.NC https://arxiv.org/abs/2608.01947 False False 2608.01960 Phylogeny.fr: the phylogenetic platform designed for non-specialists 2026-08-03 q-bio.QM q-bio.QM https://arxiv.org/abs/2608.01960 False False 2608.02208 Self-supervised DXA representations encode multi-system disease risk, biological aging and heritability 2026-08-03 cs.CV;q-bio.QM q-bio.QM https://arxiv.org/abs/2608.02208 False False 2608.02465 NeuroInspector: A Local-First Environment for Inspecting and Annotating Hierarchical Neuroscience Datasets 2026-08-03 q-bio.QM q-bio.QM https://arxiv.org/abs/2608.02465 False False 2608.02562 A curvature-based criterion for harmonic circadian waveforms 2026-08-03 q-bio.QM q-bio.QM https://arxiv.org/abs/2608.02562 False False 2608.01773 NeuroWorld: A Latent Brain World Model for Stimulus-Conditioned Human Brain Dynamics 2026-08-03 q-bio.NC q-bio.NC https://arxiv.org/abs/2608.01773 False False 2608.01947 Divisive Normalization Shapes Low-Rank Slow Manifolds for Continuous Working Memory 2026-08-03 cs.AI;cs.NE;q-bio.NC q-bio.NC https://arxiv.org/abs/2608.01947 False False 2608.01960 Phylogeny.fr: the phylogenetic platform designed for non-specialists 2026-08-03 q-bio.QM q-bio.QM https://arxiv.org/abs/2608.01960 False False 2608.02208 Self-supervised DXA representations encode multi-system disease risk, biological aging and heritability 2026-08-03 cs.CV;q-bio.QM q-bio.QM https://arxiv.org/abs/2608.02208 False False 2608.02465 NeuroInspector: A Local-First Environment for Inspecting and Annotating Hierarchical Neuroscience Datasets 2026-08-03 q-bio.QM q-bio.QM https://arxiv.org/abs/2608.02465 False False 2608.02562 A curvature-based criterion for harmonic circadian waveforms 2026-08-03 q-bio.QM q-bio.QM https://arxiv.org/abs/2608.02562 False False 2608.02684 A Blind Spot in Alignment: Quantifying Biosecurity Risks in Large Language Models 2026-08-03 cs.AI;q-bio.QM q-bio.QM https://arxiv.org/abs/2608.02684 False False 2608.02704 Predictive Set Theory: A Generative Framework for Cognitive Architecture with Operationalized Core Mechanisms 2026-08-03 cs.AI;cs.LO;q-bio.NC q-bio.NC https://arxiv.org/abs/2608.02704 False False 2608.02781 A method for comparing inferred evolutionary accumulation dynamics across covariates and model structures 2026-08-03 q-bio.QM;stat.ME q-bio.QM https://arxiv.org/abs/2608.02781 False False 2608.02796 REDE: A Quantitative Framework for Differential-Expression Reproducibility and Diagnostic Transfer Across Nine Cohorts and Three Cancers 2026-08-03 q-bio.QM q-bio.QM https://arxiv.org/abs/2608.02796 False False 2608.02804 Detecting high-frequency brain disorder signals using dynamic mode decomposition from EEG 2026-08-03 cs.LG;eess.SP;q-bio.NC q-bio.NC https://arxiv.org/abs/2608.02804 False False 2608.02864 Experimental access to molarity's blind spot in macroscopic assays 2026-08-03 physics.chem-ph;q-bio.BM q-bio.BM https://arxiv.org/abs/2608.02864 False False 2608.02865 A concentration-independent paradigm rendering weak interactions inherently quantifiable 2026-08-03 physics.chem-ph;q-bio.BM q-bio.BM https://arxiv.org/abs/2608.02865 False False 2608.02866 Expanding Protein Structure Prediction into Conformational State Space 2026-08-03 q-bio.BM q-bio.BM https://arxiv.org/abs/2608.02866 False False 2608.02896 Modelling temporal dynamics of suicidal ideation and behaviour across pre- to early adolescence using a Markov framework 2026-08-03 q-bio.NC;stat.AP q-bio.NC https://arxiv.org/abs/2608.02896 False False 2608.02961 Scaling an Autoregressive Transformer for Single-Cell Generation 2026-08-03 cs.AI;cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2608.02961 False False 2608.02704 Predictive Set Theory: A Generative Framework for Cognitive Architecture with Operationalized Core Mechanisms 2026-08-03 cs.AI;cs.LO;q-bio.NC q-bio.NC https://arxiv.org/abs/2608.02704 False False 2608.02781 A method for comparing inferred evolutionary accumulation dynamics across covariates and model structures 2026-08-03 q-bio.QM;stat.ME q-bio.QM https://arxiv.org/abs/2608.02781 False False 2608.02796 REDE: A Quantitative Framework for Differential-Expression Reproducibility and Diagnostic Transfer Across Nine Cohorts and Three Cancers 2026-08-03 q-bio.QM q-bio.QM https://arxiv.org/abs/2608.02796 False False 2608.02804 Detecting high-frequency brain disorder signals using dynamic mode decomposition from EEG 2026-08-03 cs.LG;eess.SP;q-bio.NC q-bio.NC https://arxiv.org/abs/2608.02804 False False 2608.02864 Experimental access to molarity's blind spot in macroscopic assays 2026-08-03 physics.chem-ph;q-bio.BM q-bio.BM https://arxiv.org/abs/2608.02864 False False 2608.02865 A concentration-independent paradigm rendering weak interactions inherently quantifiable 2026-08-03 physics.chem-ph;q-bio.BM q-bio.BM https://arxiv.org/abs/2608.02865 False False 2608.02866 Expanding Protein Structure Prediction into Conformational State Space 2026-08-03 q-bio.BM q-bio.BM https://arxiv.org/abs/2608.02866 False False 2608.02896 Modelling temporal dynamics of suicidal ideation and behaviour across pre- to early adolescence using a Markov framework 2026-08-03 q-bio.NC;stat.AP q-bio.NC https://arxiv.org/abs/2608.02896 False False 2608.02961 Scaling an Autoregressive Transformer for Single-Cell Generation 2026-08-03 cs.AI;cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2608.02961 False False 2608.02684 A Blind Spot in Alignment: Quantifying Biosecurity Risks in Large Language Models 2026-08-03 cs.AI;q-bio.QM q-bio.QM https://arxiv.org/abs/2608.02684 False False 2608.02684 A Blind Spot in Alignment: Quantifying Biosecurity Risks in Large Language Models 2026-08-03 cs.AI;q-bio.QM q-bio.QM https://arxiv.org/abs/2608.02684 False False 2608.05195 CLARA: Clarification of Language Ambiguity through Result Analysis for Natural-Language Cancer Genomics Queries 2026-08-03 cs.LG;q-bio.GN;q-bio.QM q-bio.GN https://arxiv.org/abs/2608.05195 False False 2608.05195 CLARA: Clarification of Language Ambiguity through Result Analysis for Natural-Language Cancer Genomics Queries 2026-08-03 cs.LG;q-bio.GN;q-bio.QM q-bio.GN https://arxiv.org/abs/2608.05195 False False 2608.02864 Experimental access to molarity's blind spot in macroscopic assays 2026-08-03 physics.chem-ph;q-bio.BM q-bio.BM https://arxiv.org/abs/2608.02864 False False 2608.02865 A concentration-independent paradigm rendering weak interactions inherently quantifiable 2026-08-03 physics.chem-ph;q-bio.BM q-bio.BM https://arxiv.org/abs/2608.02865 False False 2608.00985 Beyond Gene Reconstruction: Learning Cell Representations through Complementary Transcriptomic Views 2026-08-02 cs.AI;cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2608.00985 False False 2608.00995 A persistent random-walk model of molecular transport in neuronal dendritic trees 2026-08-02 math.PR;physics.bio-ph;q-bio.SC q-bio.SC https://arxiv.org/abs/2608.00995 False False 2608.01143 Funnel-like protein energy landscapes emerge from functional evolution under thermal fluctuations 2026-08-02 physics.bio-ph;physics.stat-mech;q-bio.BM q-bio.BM https://arxiv.org/abs/2608.01143 False False 2608.01239 Smart membrane: high content in situ monitoring barrier on chip with artificial neuronal network 2026-08-02 eess.SP;q-bio.CB q-bio.CB https://arxiv.org/abs/2608.01239 False False 2608.01297 Data augmentation as a framework for modeling hippocampal contributions to generalization 2026-08-02 q-bio.NC q-bio.NC https://arxiv.org/abs/2608.01297 False False 2608.01434 Statistical Mechanics of Learning on Product Wasserstein Manifolds 2026-08-02 cs.AI;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2608.01434 False False 2608.01481 Interpretable MEG Decoding of Perceived Speech: Cortical Sources and the Stimulus Features That Drive Retrieval 2026-08-02 cs.LG;cs.SD;q-bio.NC q-bio.NC https://arxiv.org/abs/2608.01481 False False 2608.00985 Beyond Gene Reconstruction: Learning Cell Representations through Complementary Transcriptomic Views 2026-08-02 cs.AI;cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2608.00985 False False 2608.00995 A persistent random-walk model of molecular transport in neuronal dendritic trees 2026-08-02 math.PR;physics.bio-ph;q-bio.SC q-bio.SC https://arxiv.org/abs/2608.00995 False False 2608.01143 Funnel-like protein energy landscapes emerge from functional evolution under thermal fluctuations 2026-08-02 physics.bio-ph;physics.stat-mech;q-bio.BM q-bio.BM https://arxiv.org/abs/2608.01143 False False 2608.01297 Data augmentation as a framework for modeling hippocampal contributions to generalization 2026-08-02 q-bio.NC q-bio.NC https://arxiv.org/abs/2608.01297 False False 2608.01434 Statistical Mechanics of Learning on Product Wasserstein Manifolds 2026-08-02 cs.AI;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2608.01434 False False 2608.01481 Interpretable MEG Decoding of Perceived Speech: Cortical Sources and the Stimulus Features That Drive Retrieval 2026-08-02 cs.LG;cs.SD;q-bio.NC q-bio.NC https://arxiv.org/abs/2608.01481 False False 2608.01239 Smart membrane: high content in situ monitoring barrier on chip with artificial neural network 2026-08-02 eess.SP;q-bio.CB q-bio.CB https://arxiv.org/abs/2608.01239 False False 2608.01239 Smart membrane: high content in situ monitoring barrier on chip with artificial neural network 2026-08-02 eess.SP;q-bio.CB q-bio.CB https://arxiv.org/abs/2608.01239 False False 2608.01434 Statistical Mechanics of Learning on Product Wasserstein Manifolds 2026-08-02 cs.AI;cs.LG;math.MG;q-bio.NC;stat.ML q-bio.NC https://arxiv.org/abs/2608.01434 False False 2608.01434 Statistical Mechanics of Learning on Product Wasserstein Manifolds 2026-08-02 cs.AI;cs.LG;math.MG;q-bio.NC;stat.ML q-bio.NC https://arxiv.org/abs/2608.01434 False False 2608.00405 Gene Ontology-Guided Hierarchical Spatial Gene Expression Prediction from Histopathology Images 2026-08-01 cs.AI;q-bio.GN q-bio.GN https://arxiv.org/abs/2608.00405 False False 2608.00503 Recursive Gaussian Processes and the Bayesian Brain 2026-08-01 cs.LG;q-bio.NC;stat.ML q-bio.NC https://arxiv.org/abs/2608.00503 False False 2608.00662 No persistent circadian oscillator at genome resolution: pseudo-coherence in gut microbiome dynamics 2026-08-01 physics.AO;physics.bio-ph;q-bio.GN q-bio.GN https://arxiv.org/abs/2608.00662 False False 2608.00697 Evolutionary Curriculum Learning Improves Biological Sequence Modeling 2026-08-01 cs.AI;cs.LG;q-bio.BM;stat.ML q-bio.BM https://arxiv.org/abs/2608.00697 False False 2608.00835 Deep Learning CNN and Recurrence Analysis for Alpha Gamma EEG Biomarkers in Fragile X Syndrome 2026-08-01 cs.AI;cs.CV;cs.LG;physics.data-an;q-bio.NC q-bio.NC https://arxiv.org/abs/2608.00835 False False 2608.00846 Bayesian comparison of Langevin dynamics for cell motility from positional observation 2026-08-01 physics.AO;physics.bio-ph;q-bio.CB;stat.ME q-bio.CB https://arxiv.org/abs/2608.00846 False False 2608.00405 Gene Ontology-Guided Hierarchical Spatial Gene Expression Prediction from Histopathology Images 2026-08-01 cs.AI;q-bio.GN q-bio.GN https://arxiv.org/abs/2608.00405 False False 2608.00503 Recursive Gaussian Processes and the Bayesian Brain 2026-08-01 cs.LG;q-bio.NC;stat.ML q-bio.NC https://arxiv.org/abs/2608.00503 False False 2608.00662 No persistent circadian oscillator at genome resolution: pseudo-coherence in gut microbiome dynamics 2026-08-01 physics.AO;physics.bio-ph;q-bio.GN q-bio.GN https://arxiv.org/abs/2608.00662 False False 2608.00697 Evolutionary Curriculum Learning Improves Biological Sequence Modeling 2026-08-01 cs.AI;cs.LG;q-bio.BM;stat.ML q-bio.BM https://arxiv.org/abs/2608.00697 False False 2608.00835 Deep Learning CNN and Recurrence Analysis for Alpha Gamma EEG Biomarkers in Fragile X Syndrome 2026-08-01 cs.AI;cs.CV;cs.LG;physics.data-an;q-bio.NC q-bio.NC https://arxiv.org/abs/2608.00835 False False 2608.00846 Bayesian comparison of Langevin dynamics for cell motility from positional observation 2026-08-01 physics.AO;physics.bio-ph;q-bio.CB;stat.ME q-bio.CB https://arxiv.org/abs/2608.00846 False False 2608.00697 Evolutionary Curriculum Learning Improves Biological Sequence Modeling 2026-08-01 cs.AI;cs.LG;q-bio.BM;stat.ML q-bio.BM https://arxiv.org/abs/2608.00697 False False 2607.29007 EasyBCI Agent: Towards Universal Neural Data Preprocessing for Brain-Computer Interfaces 2026-07-31 q-bio.QM q-bio.QM https://arxiv.org/abs/2607.29007 False False 2607.29043 Improving scDiffusion with Sparsity-Biased Classifier-Free Guidance 2026-07-31 cs.AI;q-bio.GN q-bio.GN https://arxiv.org/abs/2607.29043 False False 2607.29068 Critical Flicker Fusion Frequency As A Falsifiable Boundary Between Plastic And Non-Plastic Neural Systems 2026-07-31 q-bio.NC q-bio.NC https://arxiv.org/abs/2607.29068 False False 2607.29093 metasignal: A Python Package for Comprehensive Metacognitive Analysis and Decision-Making 2026-07-31 cs.AI;q-bio.NC;stat.AP q-bio.NC https://arxiv.org/abs/2607.29093 False False 2607.29101 Quaternionic Response Geometry for Proteins: Toward a Noncommutative Theory of Ordered Deformations 2026-07-31 q-bio.BM q-bio.BM https://arxiv.org/abs/2607.29101 False False 2607.29251 Fleming-Viot Selection of the Yaglom Limit for Age-Structured Bellman-Harris Processes, with Application to Livestock Epidemic Surveillance 2026-07-31 cs.SY;eess.SY;math.PR;q-bio.PE q-bio.PE https://arxiv.org/abs/2607.29251 False False 2607.29476 Resource depletion accelerates rate learning but not composition learning in patch foraging 2026-07-31 math.PR;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.29476 False False 2607.29531 Multi-Source Multi-View Graph Domain Adaptation with Hyperbolic Residual Encoding for Cross-Site MDD Identification from rs-fMRI 2026-07-31 cs.CV;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.29531 False False 2607.29537 Quantifying the cost of network computations to unpack structure-function relationships in the brain 2026-07-31 physics.bio-ph;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.29537 False False 2607.29043 Improving scDiffusion with Sparsity-Biased Classifier-Free Guidance 2026-07-31 cs.AI;q-bio.GN q-bio.GN https://arxiv.org/abs/2607.29043 False False 2607.29068 Critical Flicker Fusion Frequency As A Falsifiable Boundary Between Plastic And Non-Plastic Neural Systems 2026-07-31 q-bio.NC q-bio.NC https://arxiv.org/abs/2607.29068 False False 2607.29093 metasignal: A Python Package for Comprehensive Metacognitive Analysis and Decision-Making 2026-07-31 cs.AI;q-bio.NC;stat.AP q-bio.NC https://arxiv.org/abs/2607.29093 False False 2607.29101 Quaternionic Response Geometry for Proteins: Toward a Noncommutative Theory of Ordered Deformations 2026-07-31 q-bio.BM q-bio.BM https://arxiv.org/abs/2607.29101 False False 2607.29251 Fleming-Viot Selection of the Yaglom Limit for Age-Structured Bellman-Harris Processes, with Application to Livestock Epidemic Surveillance 2026-07-31 cs.SY;eess.SY;math.PR;q-bio.PE q-bio.PE https://arxiv.org/abs/2607.29251 False False 2607.29476 Resource depletion accelerates rate learning but not composition learning in patch foraging 2026-07-31 math.PR;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.29476 False False 2607.29531 Multi-Source Multi-View Graph Domain Adaptation with Hyperbolic Residual Encoding for Cross-Site MDD Identification from rs-fMRI 2026-07-31 cs.CV;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.29531 False False 2607.29537 Quantifying the cost of network computations to unpack structure-function relationships in the brain 2026-07-31 physics.bio-ph;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.29537 False False 2608.00105 What Carries the Signal in Pathology Foundation-Model Atlases? A Patient-Level Controlled Benchmark in Breast Cancer 2026-07-31 cs.CV;q-bio.QM q-bio.QM https://arxiv.org/abs/2608.00105 False False 2608.00139 A Quantum Reservoir for Neurodynamical Forecasting 2026-07-31 physics.quant-ph;q-bio.QM q-bio.QM https://arxiv.org/abs/2608.00139 False False 2608.00154 Timescale disparity and the reduction of the chemical master equation: A geometric approach via the linear noise approximation 2026-07-31 q-bio.MN q-bio.MN https://arxiv.org/abs/2608.00154 False False 2608.00249 Dynamical principles of habituation across substrates and scales 2026-07-31 cs.SY;eess.SY;physics.AO;q-bio.NC q-bio.NC https://arxiv.org/abs/2608.00249 False False 2608.00261 Cross-Task Dissociation in Frontier Vision-Language Model Theory of Mind 2026-07-31 cs.AI;cs.CL;cs.CV;cs.MA;q-bio.NC q-bio.NC https://arxiv.org/abs/2608.00261 False False 2608.00292 Why males compete rather than care, with an application to supplying collective goods 2026-07-31 math.DS;q-bio.PE q-bio.PE https://arxiv.org/abs/2608.00292 False False 2608.00306 Mechanistic bridges from receptors to whole-brain dynamics: mean-field reductions, validity domains, and computational trade-offs 2026-07-31 q-bio.NC q-bio.NC https://arxiv.org/abs/2608.00306 False False 2607.29007 EasyBCI Agent: Towards Universal Neural Data Preprocessing for Brain-Computer Interfaces 2026-07-31 q-bio.QM q-bio.QM https://arxiv.org/abs/2607.29007 False False 2608.00105 What Carries the Signal in Pathology Foundation-Model Atlases? A Patient-Level Controlled Benchmark in Breast Cancer 2026-07-31 cs.CV;q-bio.QM q-bio.QM https://arxiv.org/abs/2608.00105 False False 2608.00139 A Quantum Reservoir for Neurodynamical Forecasting 2026-07-31 physics.quant-ph;q-bio.QM q-bio.QM https://arxiv.org/abs/2608.00139 False False 2608.00154 Timescale disparity and the reduction of the chemical master equation: A geometric approach via the linear noise approximation 2026-07-31 q-bio.MN q-bio.MN https://arxiv.org/abs/2608.00154 False False 2608.00249 Dynamical principles of habituation across substrates and scales 2026-07-31 cs.SY;eess.SY;physics.AO;q-bio.NC q-bio.NC https://arxiv.org/abs/2608.00249 False False 2608.00261 Cross-Task Dissociation in Frontier Vision-Language Model Theory of Mind 2026-07-31 cs.AI;cs.CL;cs.CV;cs.MA;q-bio.NC q-bio.NC https://arxiv.org/abs/2608.00261 False False 2608.00292 Why males compete rather than care, with an application to supplying collective goods 2026-07-31 math.DS;q-bio.PE q-bio.PE https://arxiv.org/abs/2608.00292 False False 2608.00306 Mechanistic bridges from receptors to whole-brain dynamics: mean-field reductions, validity domains, and computational trade-offs 2026-07-31 q-bio.NC q-bio.NC https://arxiv.org/abs/2608.00306 False False 2607.29007 EasyBCI Agent: Towards Universal Neural Data Preprocessing for Brain-Computer Interfaces 2026-07-31 q-bio.QM q-bio.QM https://arxiv.org/abs/2607.29007 False False 2608.02646 Cross-Anesthetic ECoG State Decoding Fails at the Decision Threshold, Not the Representation 2026-07-31 cs.AI;q-bio.QM q-bio.QM https://arxiv.org/abs/2608.02646 False False 2607.29409 The Zombie Infection Model 2026-07-31 math.PR;q-bio.PE q-bio.PE https://arxiv.org/abs/2607.29409 False False 2608.02646 Cross-Anesthetic ECoG State Decoding Fails at the Decision Threshold, Not the Representation 2026-07-31 cs.AI;q-bio.QM q-bio.QM https://arxiv.org/abs/2608.02646 False False 2607.29409 The Zombie Infection Model 2026-07-31 math.PR;q-bio.PE q-bio.PE https://arxiv.org/abs/2607.29409 False False 2608.00306 Mechanistic bridges from receptors to whole-brain dynamics: mean-field reductions, validity domains, and computational trade-offs 2026-07-31 q-bio.NC q-bio.NC https://arxiv.org/abs/2608.00306 False False 2608.00306 Mechanistic bridges from receptors to whole-brain dynamics: mean-field reductions, validity domains, and computational trade-offs 2026-07-31 q-bio.NC q-bio.NC https://arxiv.org/abs/2608.00306 False False 2607.27570 The evolution of cooperation under imperfect phenotypic recognition 2026-07-30 q-bio.PE q-bio.PE https://arxiv.org/abs/2607.27570 False False 2607.27983 Evolutionary adaptation through bet-hedging in finite populations under fluctuating environments 2026-07-30 q-bio.PE q-bio.PE https://arxiv.org/abs/2607.27983 False False 2607.28053 A data-driven stage-structured host-parasitoid model for optimizing Trichogramma interventions against soybean pod borer (Leguminivora glycinivorella) outbreaks 2026-07-30 math.DS;q-bio.PE q-bio.PE https://arxiv.org/abs/2607.28053 False False 2607.28068 Stimulus-Evoked Network Dynamics in Human Cortical Organoids: From a Graph-Computational Framework to Repeated-Stimulation Depression 2026-07-30 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.28068 False False 2607.28219 Hash Chemistry: Minimal Models for Evolutionary Growth of Complexity 2026-07-30 cs.NE;physics.CG;q-bio.PE q-bio.PE https://arxiv.org/abs/2607.28219 False False 2607.28250 Causal Architecture Dynamics Prior to Arrival of Self-replicators in a Model of Catalytic Networks Relevant to Origin-of-Life 2026-07-30 q-bio.PE q-bio.PE https://arxiv.org/abs/2607.28250 False False 2607.28514 Multi-scale measures of time-varying epidemic spread on human mobility networks 2026-07-30 math.DS;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.28514 False False 2607.28601 Using Theory of Mind to Arbitrate between Social and Non-social Learning 2026-07-30 cs.MA;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.28601 False False 2607.28608 KAISEN: Reproducible Subgroup Fairness Auditing for Clinical Risk Models 2026-07-30 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.28608 False False 2607.27570 The evolution of cooperation under imperfect phenotypic recognition 2026-07-30 q-bio.PE q-bio.PE https://arxiv.org/abs/2607.27570 False False 2607.27983 Evolutionary adaptation through bet-hedging in finite populations under fluctuating environments 2026-07-30 q-bio.PE q-bio.PE https://arxiv.org/abs/2607.27983 False False 2607.28053 A data-driven stage-structured host-parasitoid model for optimizing Trichogramma interventions against soybean pod borer (Leguminivora glycinivorella) outbreaks 2026-07-30 math.DS;q-bio.PE q-bio.PE https://arxiv.org/abs/2607.28053 False False 2607.28068 Stimulus-Evoked Network Dynamics in Human Cortical Organoids: From a Graph-Computational Framework to Repeated-Stimulation Depression 2026-07-30 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.28068 False False 2607.28219 Hash Chemistry: Minimal Models for Evolutionary Growth of Complexity 2026-07-30 cs.NE;physics.CG;q-bio.PE q-bio.PE https://arxiv.org/abs/2607.28219 False False 2607.28250 Causal Architecture Dynamics Prior to Arrival of Self-replicators in a Model of Catalytic Networks Relevant to Origin-of-Life 2026-07-30 q-bio.PE q-bio.PE https://arxiv.org/abs/2607.28250 False False 2607.28514 Multi-scale measures of time-varying epidemic spread on human mobility networks 2026-07-30 math.DS;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.28514 False False 2607.28601 Using Theory of Mind to Arbitrate between Social and Non-social Learning 2026-07-30 cs.MA;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.28601 False False 2607.28608 KAISEN: Reproducible Subgroup Fairness Auditing for Clinical Risk Models 2026-07-30 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.28608 False False 2607.28779 Bits per Spike as a Betting Game: An Interpretable Unit for Held-Out Log-Likelihood in Neural Data Analysis 2026-07-30 q-bio.NC;stat.ME q-bio.NC https://arxiv.org/abs/2607.28779 False False 2607.28898 But What Behavior? 2026-07-30 q-bio.NC;q-bio.PE q-bio.NC https://arxiv.org/abs/2607.28898 False False 2607.28779 Bits per Spike as a Betting Game: An Interpretable Unit for Held-Out Log-Likelihood in Neural Data Analysis 2026-07-30 q-bio.NC;stat.ME q-bio.NC https://arxiv.org/abs/2607.28779 False False 2607.28898 But What Behavior? 2026-07-30 q-bio.NC;q-bio.PE q-bio.NC https://arxiv.org/abs/2607.28898 False False 2608.00098 GRAIN: Molecules Are Not the Right Granularity -- Active-Ingredient Modeling for Safe Medication Recommendation 2026-07-30 cs.AI;q-bio.QM q-bio.QM https://arxiv.org/abs/2608.00098 False False 2608.00099 LLMBDC: Language Model for Biological Domains Oriented Clustering of Gene Ontology 2026-07-30 cs.AI;q-bio.GN q-bio.GN https://arxiv.org/abs/2608.00099 False False 2608.00098 GRAIN: Molecules Are Not the Right Granularity -- Active-Ingredient Modeling for Safe Medication Recommendation 2026-07-30 cs.AI;q-bio.QM q-bio.QM https://arxiv.org/abs/2608.00098 False False 2608.00099 LLMBDC: Language Model for Biological Domains Oriented Clustering of Gene Ontology 2026-07-30 cs.AI;q-bio.GN q-bio.GN https://arxiv.org/abs/2608.00099 False False 2607.26391 Q-Steer: Action-Value Guidance for Molecular Policy Optimization 2026-07-29 cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2607.26391 False False 2607.26397 Knowledge before Reasoning: EC-Reason-Bench, a Training-Free Diagnostic Benchmark for LLM Enzyme Classification 2026-07-29 cs.CL;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.26397 False False 2607.26666 Artificial intelligence in deep brain stimulation for movement disorders: a systematic review and technology readiness assessment 2026-07-29 q-bio.NC q-bio.NC https://arxiv.org/abs/2607.26666 False False 2607.26798 Navigation driven by bidirectional information transmission between sensing and actuation 2026-07-29 physics.bio-ph;physics.soft;physics.stat-mech;q-bio.MN q-bio.MN https://arxiv.org/abs/2607.26798 False False 2607.26854 TREA-Net: A Transferable Residual Epidemiological Adaptation Network for Dengue Incidence Forecasting 2026-07-29 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.26854 False False 2607.27137 Hybrid SINDy-EnKF in Learning Chikungunya Dynamics from Incomplete, Noisy or Partially Observed Data 2026-07-29 q-bio.PE q-bio.PE https://arxiv.org/abs/2607.27137 False False 2607.26391 Q-Steer: Action-Value Guidance for Molecular Policy Optimization 2026-07-29 cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2607.26391 False False 2607.26397 Knowledge before Reasoning: EC-Reason-Bench, a Training-Free Diagnostic Benchmark for LLM Enzyme Classification 2026-07-29 cs.CL;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.26397 False False 2607.26666 Artificial intelligence in deep brain stimulation for movement disorders: a systematic review and technology readiness assessment 2026-07-29 q-bio.NC q-bio.NC https://arxiv.org/abs/2607.26666 False False 2607.26798 Navigation driven by bidirectional information transmission between sensing and actuation 2026-07-29 physics.bio-ph;physics.soft;physics.stat-mech;q-bio.MN q-bio.MN https://arxiv.org/abs/2607.26798 False False 2607.26854 TREA-Net: A Transferable Residual Epidemiological Adaptation Network for Dengue Incidence Forecasting 2026-07-29 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.26854 False False 2607.27137 Hybrid SINDy-EnKF in Learning Chikungunya Dynamics from Incomplete, Noisy or Partially Observed Data 2026-07-29 q-bio.PE q-bio.PE https://arxiv.org/abs/2607.27137 False False 2607.27258 PlantBGC: Transformer for Plant BGC Discovery via Label-Free Domain Adaptation and Weak Supervision 2026-07-29 cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2607.27258 False False 2607.27291 IndelFreeAligner: A Streaming Aligner for Comprehensive Gapless Alignment Against Terabase-Scale References 2026-07-29 q-bio.GN q-bio.GN https://arxiv.org/abs/2607.27291 False False 2607.27308 ZUNA1.1: A more flexible EEG foundation model for Denoising and Super-resolution 2026-07-29 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.27308 False False 2607.27496 Identifying common backbones of interactions underlying food webs via non-deterministic alignments 2026-07-29 math.OC;q-bio.PE q-bio.PE https://arxiv.org/abs/2607.27496 False False 2607.27258 PlantBGC: Transformer for Plant BGC Discovery via Label-Free Domain Adaptation and Weak Supervision 2026-07-29 cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2607.27258 False False 2607.27291 IndelFreeAligner: A Streaming Aligner for Comprehensive Gapless Alignment Against Terabase-Scale References 2026-07-29 q-bio.GN q-bio.GN https://arxiv.org/abs/2607.27291 False False 2607.27308 ZUNA1.1: A more flexible EEG foundation model for Denoising and Super-resolution 2026-07-29 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.27308 False False 2607.27496 Identifying common backbones of interactions underlying food webs via non-deterministic alignments 2026-07-29 math.OC;q-bio.PE q-bio.PE https://arxiv.org/abs/2607.27496 False False 2607.28681 MPP-GNN: Subject-Adaptive Community Detection for fMRI-Based Alzheimer's Disease Classification 2026-07-29 cs.AI;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.28681 False False 2607.28681 MPP-GNN: Subject-Adaptive Community Detection for fMRI-Based Alzheimer's Disease Classification 2026-07-29 cs.AI;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.28681 False False 2607.26798 Navigation driven by bidirectional information transmission between sensing and actuation 2026-07-29 physics.bio-ph;physics.soft;physics.stat-mech;q-bio.MN q-bio.MN https://arxiv.org/abs/2607.26798 False False 2607.26798 Navigation driven by bidirectional information transmission between sensing and actuation 2026-07-29 physics.bio-ph;physics.soft;physics.stat-mech;q-bio.MN q-bio.MN https://arxiv.org/abs/2607.26798 False False 2607.25217 Variational kinetics: elementary reaction kinetics via conic optimisation 2026-07-28 q-bio.MN q-bio.MN https://arxiv.org/abs/2607.25217 False False 2607.25288 When Does Deep Representation Learning Help Single-Cell Clustering? A Sensitivity-Aware Diagnostic Benchmark for Biomedical AI Pipelines 2026-07-28 cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2607.25288 False False 2607.25435 On the Cost of Entrainment in Protein Translation 2026-07-28 q-bio.MN;q-bio.QM q-bio.MN https://arxiv.org/abs/2607.25435 False False 2607.25456 Disconnectivity in Multistationarity Regions of Cascade of Goldbeter--Koshland Loops 2026-07-28 q-bio.MN;q-bio.QM q-bio.MN https://arxiv.org/abs/2607.25456 False False 2607.25475 Coevolution of epidemic dynamics and network topology driven by disease fatality and waning immunity 2026-07-28 physics.AO;physics.soc-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2607.25475 False False 2607.25518 AMPBench-MT: A Homology-Controlled Benchmark for Antimicrobial Peptide Potency, Spectrum, and Safety Prediction 2026-07-28 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.25518 False False 2607.25573 Global Dynamics of Trait-Structured Generalised Lotka-Volterra Systems with Trait-Independent Interactions 2026-07-28 math.AP;q-bio.PE q-bio.PE https://arxiv.org/abs/2607.25573 0.7537 0.8145 True 6 6.9 False 2607.25609 Contrastive Representation Learning of Longitudinal Disease Trajectories on Temporal Graphs 2026-07-28 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.25609 False False 2607.25787 GraphIDyOM: A graph-native Python reimplementation of IDyOM for musical expectation modelling 2026-07-28 cs.SD;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.25787 False False 2607.25897 Environmental and cell-cell signaling shape developmental trajectories across morphogenetic landscapes 2026-07-28 physics.PS;q-bio.TO q-bio.TO https://arxiv.org/abs/2607.25897 False False 2607.25991 Phantom Evidence: How and Why Generative AI Manufactures False Positives in Science 2026-07-28 q-bio.NC q-bio.NC https://arxiv.org/abs/2607.25991 False False 2607.25217 Variational kinetics: elementary reaction kinetics via conic optimisation 2026-07-28 q-bio.MN q-bio.MN https://arxiv.org/abs/2607.25217 False False 2607.25288 When Does Deep Representation Learning Help Single-Cell Clustering? A Sensitivity-Aware Diagnostic Benchmark for Biomedical AI Pipelines 2026-07-28 cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2607.25288 False False 2607.25435 On the Cost of Entrainment in Protein Translation 2026-07-28 q-bio.MN;q-bio.QM q-bio.MN https://arxiv.org/abs/2607.25435 False False 2607.25456 Disconnectivity in Multistationarity Regions of Cascade of Goldbeter--Koshland Loops 2026-07-28 q-bio.MN;q-bio.QM q-bio.MN https://arxiv.org/abs/2607.25456 False False 2607.25475 Coevolution of epidemic dynamics and network topology driven by disease fatality and waning immunity 2026-07-28 physics.AO;physics.soc-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2607.25475 False False 2607.25518 AMPBench-MT: A Homology-Controlled Benchmark for Antimicrobial Peptide Potency, Spectrum, and Safety Prediction 2026-07-28 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.25518 False False 2607.25573 Global Dynamics of Trait-Structured Generalised Lotka-Volterra Systems with Trait-Independent Interactions 2026-07-28 math.AP;q-bio.PE q-bio.PE https://arxiv.org/abs/2607.25573 0.7537 0.8145 True 6 6.9 False 2607.25609 Contrastive Representation Learning of Longitudinal Disease Trajectories on Temporal Graphs 2026-07-28 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.25609 False False 2607.25787 GraphIDyOM: A graph-native Python reimplementation of IDyOM for musical expectation modelling 2026-07-28 cs.SD;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.25787 False False 2607.25897 Environmental and cell-cell signaling shape developmental trajectories across morphogenetic landscapes 2026-07-28 physics.PS;q-bio.TO q-bio.TO https://arxiv.org/abs/2607.25897 False False 2607.25991 Phantom Evidence: How and Why Generative AI Manufactures False Positives in Science 2026-07-28 q-bio.NC q-bio.NC https://arxiv.org/abs/2607.25991 False False 2607.26179 Cognitive Convergence: Deep Similarities Between Large Language Models and Human Cognition 2026-07-28 cs.AI;cs.CL;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.26179 False False 2607.26295 A behavior-environment information loop drives sensory navigation 2026-07-28 physics.bio-ph;physics.stat-mech;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.26295 False False 2607.26297 Three Failures of Pain Location: Why the Diagnostic Utility of Symptom Localization Is Not One Thing 2026-07-28 q-bio.NC;stat.AP q-bio.NC https://arxiv.org/abs/2607.26297 False False 2607.26322 Pragmatic Reasoning in Design 2026-07-28 cs.HC;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.26322 False False 2607.26179 Cognitive Convergence: Deep Similarities Between Large Language Models and Human Cognition 2026-07-28 cs.AI;cs.CL;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.26179 False False 2607.26295 A behavior-environment information loop drives sensory navigation 2026-07-28 physics.bio-ph;physics.stat-mech;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.26295 False False 2607.26297 Three Failures of Pain Location: Why the Diagnostic Utility of Symptom Localization Is Not One Thing 2026-07-28 q-bio.NC;stat.AP q-bio.NC https://arxiv.org/abs/2607.26297 False False 2607.26322 Pragmatic Reasoning in Design 2026-07-28 cs.HC;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.26322 False False 2607.25217 Variational kinetics: elementary reaction kinetics via conic optimisation 2026-07-28 q-bio.MN q-bio.MN https://arxiv.org/abs/2607.25217 False False 2607.25217 Variational kinetics: elementary reaction kinetics via conic optimisation 2026-07-28 q-bio.MN q-bio.MN https://arxiv.org/abs/2607.25217 False False 2607.23898 Construction of an Inducible TBCE Overexpression System to Probe Tubulin Cofactor-Mediated Microtubule Homeostasis 2026-07-27 q-bio.MN q-bio.MN https://arxiv.org/abs/2607.23898 False False 2607.23907 Growth and remodeling control shape memory in morphogenetic rods 2026-07-27 physics.bio-ph;physics.soft;q-bio.TO q-bio.TO https://arxiv.org/abs/2607.23907 False False 2607.23927 Reality Monitoring in Large Language Models: Self-Knowledge That Transforms with Conversation Memory 2026-07-27 cs.AI;cs.CL;cs.CY;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.23927 False False 2607.23975 Plato-Bio: verification-first biological novelty screening with temporal rediscovery and structural benchmarks 2026-07-27 cs.AI;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.23975 False False 2607.24093 TCellAlign: Cross-study T-cell Populations Alignment with Nomenclature-Guided Multi-Agent Workflow 2026-07-27 cs.DB;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.24093 False False 2607.24111 PPanGGOLiN V2: technical enhancement and extended functionalities for prokaryotic pangenome analysis 2026-07-27 q-bio.GN;q-bio.QM q-bio.GN https://arxiv.org/abs/2607.24111 False False 2607.24121 Nonlinear Model Reduction of Complex Networks via Spectral Submanifolds 2026-07-27 math.DS;physics.soc-ph;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.24121 False False 2607.24269 Dynamic sampling of non-stationary spontaneous activity in dissociated neuronal networks 2026-07-27 q-bio.NC q-bio.NC https://arxiv.org/abs/2607.24269 False False 2607.24285 Effect of wind on prey-predator dynamics with group defense and additional food strategy 2026-07-27 q-bio.PE q-bio.PE https://arxiv.org/abs/2607.24285 False False 2607.24328 The role of nestedness and saturating feedback in bipartite ecological systems 2026-07-27 physics.dis-nn;q-bio.PE q-bio.PE https://arxiv.org/abs/2607.24328 False False 2607.24356 From read-out geometry to in-silico stimulation: a distributed functional-connectivity signature of Alzheimer's disease 2026-07-27 q-bio.NC q-bio.NC https://arxiv.org/abs/2607.24356 False False 2607.24378 Bayesian Feature Extraction using Gaussian and Diffused-gamma Priors for High Dimensional Spatio-Temporal Data 2026-07-27 q-bio.QM;stat.AP;stat.CO;stat.ME;stat.ML q-bio.QM https://arxiv.org/abs/2607.24378 False False 2607.24441 Rapid quantitative chemical composition mapping using model-based MRI reconstruction with field inhomogeneity correction 2026-07-27 eess.IV;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.24441 False False 2607.24503 Synaptic clustering emerges from learning and supports covariance discrimination 2026-07-27 q-bio.NC q-bio.NC https://arxiv.org/abs/2607.24503 False False 2607.24615 Extreme outbreaks in non-Markovian epidemics on complex networks 2026-07-27 physics.comp-ph;physics.soc-ph;physics.stat-mech;q-bio.PE q-bio.PE https://arxiv.org/abs/2607.24615 False False 2607.24638 From Local Payoffs to Global Instabilities: A Spectral Cartography of Spatiotemporal Chaos in Canonical 2x2 Evolutionary Games 2026-07-27 physics.AO;physics.CD;physics.stat-mech;q-bio.PE q-bio.PE https://arxiv.org/abs/2607.24638 False False 2607.23898 Construction of an Inducible TBCE Overexpression System to Probe Tubulin Cofactor-Mediated Microtubule Homeostasis 2026-07-27 q-bio.MN q-bio.MN https://arxiv.org/abs/2607.23898 False False 2607.23907 Growth and remodeling control shape memory in morphogenetic rods 2026-07-27 physics.bio-ph;physics.soft;q-bio.TO q-bio.TO https://arxiv.org/abs/2607.23907 False False 2607.23927 Reality Monitoring in Large Language Models: Self-Knowledge That Transforms with Conversation Memory 2026-07-27 cs.AI;cs.CL;cs.CY;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.23927 False False 2607.23975 Plato-Bio: verification-first biological novelty screening with temporal rediscovery and structural benchmarks 2026-07-27 cs.AI;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.23975 False False 2607.24093 TCellAlign: Cross-study T-cell Populations Alignment with Nomenclature-Guided Multi-Agent Workflow 2026-07-27 cs.DB;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.24093 False False 2607.24111 PPanGGOLiN V2: technical enhancement and extended functionalities for prokaryotic pangenome analysis 2026-07-27 q-bio.GN;q-bio.QM q-bio.GN https://arxiv.org/abs/2607.24111 False False 2607.24121 Nonlinear Model Reduction of Complex Networks via Spectral Submanifolds 2026-07-27 math.DS;physics.soc-ph;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.24121 False False 2607.24269 Dynamic sampling of non-stationary spontaneous activity in dissociated neuronal networks 2026-07-27 q-bio.NC q-bio.NC https://arxiv.org/abs/2607.24269 False False 2607.24285 Effect of wind on prey-predator dynamics with group defense and additional food strategy 2026-07-27 q-bio.PE q-bio.PE https://arxiv.org/abs/2607.24285 False False 2607.24328 The role of nestedness and saturating feedback in bipartite ecological systems 2026-07-27 physics.dis-nn;q-bio.PE q-bio.PE https://arxiv.org/abs/2607.24328 False False 2607.24378 Bayesian Feature Extraction using Gaussian and Diffused-gamma Priors for High Dimensional Spatio-Temporal Data 2026-07-27 q-bio.QM;stat.AP;stat.CO;stat.ME;stat.ML q-bio.QM https://arxiv.org/abs/2607.24378 False False 2607.24441 Rapid quantitative chemical composition mapping using model-based MRI reconstruction with field inhomogeneity correction 2026-07-27 eess.IV;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.24441 False False 2607.24503 Synaptic clustering emerges from learning and supports covariance discrimination 2026-07-27 q-bio.NC q-bio.NC https://arxiv.org/abs/2607.24503 False False 2607.24615 Extreme outbreaks in non-Markovian epidemics on complex networks 2026-07-27 physics.comp-ph;physics.soc-ph;physics.stat-mech;q-bio.PE q-bio.PE https://arxiv.org/abs/2607.24615 False False 2607.24638 From Local Payoffs to Global Instabilities: A Spectral Cartography of Spatiotemporal Chaos in Canonical 2x2 Evolutionary Games 2026-07-27 physics.AO;physics.CD;physics.stat-mech;q-bio.PE q-bio.PE https://arxiv.org/abs/2607.24638 False False 2607.24874 A Hierarchical Validity-Audit Framework for Neural Mass Models in Simulation-Based Inference: From Observational Coverage to Mechanistic Interpretation 2026-07-27 q-bio.QM q-bio.QM https://arxiv.org/abs/2607.24874 False False 2607.24878 GraphRareBench: An Auditable Graph-Evidence Benchmark for Phenotype-Driven Rare-Disease Diagnosis 2026-07-27 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.24878 False False 2607.24886 A Neural Network model of Cultural Evolution 2026-07-27 q-bio.NC q-bio.NC https://arxiv.org/abs/2607.24886 False False 2607.24990 When Branch-Local Shunting Helps: A Gain-Load-Alignment Principle for Dendritic E/I Networks 2026-07-27 q-bio.NC q-bio.NC https://arxiv.org/abs/2607.24990 False False 2607.25013 A Tuning-Free Variational Framework for Muscle Redundancy Resolution: Torque Fiber Proximal Dynamics with Active-Set Switching and EMG-Validated Activation Prediction 2026-07-27 math.OC;q-bio.NC;q-bio.QM q-bio.NC https://arxiv.org/abs/2607.25013 False False 2607.25043 A universal multi-turnpike principle for optimal allocation of translational resources 2026-07-27 q-bio.GN;q-bio.MN q-bio.GN https://arxiv.org/abs/2607.25043 False False 2607.25045 CogEEGAgent: Toward Autonomous Cognitive EEG Analysis with Grounded Execution and Selection-Aware Verification 2026-07-27 cs.AI;eess.SP;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.25045 False False 2607.25115 Persistent Manifold Learning of Protein Properties 2026-07-27 q-bio.BM q-bio.BM https://arxiv.org/abs/2607.25115 False False 2607.25131 Beyond the Post Hoc User Study: Modeling Visual Decision-Making with Active Inference 2026-07-27 cs.HC;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.25131 False False 2607.24356 Optimal stimulation sites are not the most affected: personalised models of resting-state fMRI in Alzheimer's disease 2026-07-27 q-bio.NC q-bio.NC https://arxiv.org/abs/2607.24356 False False 2607.24874 A Hierarchical Validity-Audit Framework for Neural Mass Models in Simulation-Based Inference: From Observational Coverage to Mechanistic Interpretation 2026-07-27 q-bio.QM q-bio.QM https://arxiv.org/abs/2607.24874 False False 2607.24878 GraphRareBench: An Auditable Graph-Evidence Benchmark for Phenotype-Driven Rare-Disease Diagnosis 2026-07-27 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.24878 False False 2607.24886 A Neural Network model of Cultural Evolution 2026-07-27 q-bio.NC q-bio.NC https://arxiv.org/abs/2607.24886 False False 2607.24990 When Branch-Local Shunting Helps: A Gain-Load-Alignment Principle for Dendritic E/I Networks 2026-07-27 q-bio.NC q-bio.NC https://arxiv.org/abs/2607.24990 False False 2607.25013 A Tuning-Free Variational Framework for Muscle Redundancy Resolution: Torque Fiber Proximal Dynamics with Active-Set Switching and EMG-Validated Activation Prediction 2026-07-27 math.OC;q-bio.NC;q-bio.QM q-bio.NC https://arxiv.org/abs/2607.25013 False False 2607.25043 A universal multi-turnpike principle for optimal allocation of translational resources 2026-07-27 q-bio.GN;q-bio.MN q-bio.GN https://arxiv.org/abs/2607.25043 False False 2607.25045 CogEEGAgent: Toward Autonomous Cognitive EEG Analysis with Grounded Execution and Selection-Aware Verification 2026-07-27 cs.AI;eess.SP;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.25045 False False 2607.25115 Persistent Manifold Learning of Protein Properties 2026-07-27 q-bio.BM q-bio.BM https://arxiv.org/abs/2607.25115 False False 2607.25131 Beyond the Post Hoc User Study: Modeling Visual Decision-Making with Active Inference 2026-07-27 cs.HC;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.25131 False False 2607.24356 Optimal stimulation sites are not the most affected: personalised models of resting-state fMRI in Alzheimer's disease 2026-07-27 q-bio.NC q-bio.NC https://arxiv.org/abs/2607.24356 False False 2607.24441 Rapid quantitative chemical composition mapping using model-based MRI reconstruction with field inhomogeneity correction 2026-07-27 eess.IV;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.24441 False False 2607.24441 Rapid quantitative chemical composition mapping using model-based MRI reconstruction with field inhomogeneity correction 2026-07-27 eess.IV;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.24441 False False 2607.28673 SymPerturb converts symptom-network structure into testable intervention priorities 2026-07-27 q-bio.QM q-bio.QM https://arxiv.org/abs/2607.28673 False False 2607.28673 SymPerturb converts symptom-network structure into testable intervention priorities 2026-07-27 q-bio.QM q-bio.QM https://arxiv.org/abs/2607.28673 False False 2607.25013 A Tuning-Free Variational Framework for Muscle Redundancy Resolution: Torque Fiber Proximal Dynamics with Active-Set Switching and EMG-Validated Activation Prediction 2026-07-27 math.OC;q-bio.NC;q-bio.QM q-bio.NC https://arxiv.org/abs/2607.25013 False False 2607.25013 A Tuning-Free Variational Framework for Muscle Redundancy Resolution: Torque Fiber Proximal Dynamics with Active-Set Switching and EMG-Validated Activation Prediction 2026-07-27 math.OC;q-bio.NC;q-bio.QM q-bio.NC https://arxiv.org/abs/2607.25013 False False 2607.24093 TCellAlign: Cross-study T-cell Populations Alignment with Nomenclature-Guided Multi-Agent Workflow 2026-07-27 cs.DB;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.24093 False False 2607.24093 TCellAlign: Cross-study T-cell Populations Alignment with Nomenclature-Guided Multi-Agent Workflow 2026-07-27 cs.DB;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.24093 False False 2607.23518 Chamaileon: Cross-Context Binder Design with Contextualized Modeling and Mixed Sampling 2026-07-26 cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2607.23518 False False 2607.23728 Spatial spread of infection: transitions between pulled and pushed fronts 2026-07-26 physics.stat-mech;q-bio.PE q-bio.PE https://arxiv.org/abs/2607.23728 0.7682 0.7618 True 6 6.9 False 2607.23730 Quantifying antiproliferative effects of quinolinic acid on melanoma, macrophage and keratinocyte cells using a parametric cell-viability model 2026-07-26 q-bio.QM q-bio.QM https://arxiv.org/abs/2607.23730 False False 2607.23821 SCTA: An Agentic Framework for Stable and Interpretable Target Gene Discovery from Single-Cell RNA Sequencing 2026-07-26 cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2607.23821 False False 2607.23889 Evaluating Closed-Loop EEG Feedback for Simulated Prosthetic Vision in Immersive VR: A Sham-Controlled Feasibility Study 2026-07-26 cs.HC;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.23889 False False 2607.23518 Chamaileon: Cross-Context Binder Design with Contextualized Modeling and Mixed Sampling 2026-07-26 cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2607.23518 False False 2607.23728 Spatial spread of infection: transitions between pulled and pushed fronts 2026-07-26 physics.stat-mech;q-bio.PE q-bio.PE https://arxiv.org/abs/2607.23728 0.7682 0.7618 True 6 6.9 False 2607.23730 Quantifying antiproliferative effects of quinolinic acid on melanoma, macrophage and keratinocyte cells using a parametric cell-viability model 2026-07-26 q-bio.QM q-bio.QM https://arxiv.org/abs/2607.23730 False False 2607.23821 SCTA: An Agentic Framework for Stable and Interpretable Target Gene Discovery from Single-Cell RNA Sequencing 2026-07-26 cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2607.23821 False False 2607.23889 Evaluating Closed-Loop EEG Feedback for Simulated Prosthetic Vision in Immersive VR: A Sham-Controlled Feasibility Study 2026-07-26 cs.HC;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.23889 False False 2607.23289 Continuous surrogates versus threshold Boolean networks for modeling Arabidopsis ISR gene regulation 2026-07-25 cs.LG;cs.NE;q-bio.MN q-bio.MN https://arxiv.org/abs/2607.23289 0.7576 0.7714 True 5 5.6 False 2607.23382 Homeostatic Noise Buffering in Biomolecular Condensates Hinges on Phase Multiplicity Modulated by Interfacial and Droplet Size Effects 2026-07-25 q-bio.BM q-bio.BM https://arxiv.org/abs/2607.23382 False False 2607.23289 Continuous surrogates versus threshold Boolean networks for modeling Arabidopsis ISR gene regulation 2026-07-25 cs.LG;cs.NE;q-bio.MN q-bio.MN https://arxiv.org/abs/2607.23289 0.7576 0.7714 True 5 5.6 False 2607.23382 Homeostatic Noise Buffering in Biomolecular Condensates Hinges on Phase Multiplicity Modulated by Interfacial and Droplet Size Effects 2026-07-25 q-bio.BM q-bio.BM https://arxiv.org/abs/2607.23382 False False 2607.24848 Beyond Predictive Accuracy: A Reliability-Aware Audit of Molecular Representations for Human Olfaction 2026-07-25 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.24848 False False 2607.23284 StageGuard: Physiologically Constrained Sleep Staging 2026-07-25 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.23284 False False 2607.23284 StageGuard: Physiologically Constrained Sleep Staging 2026-07-25 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.23284 False False 2607.24848 Beyond Predictive Accuracy: A Reliability-Aware Audit of Molecular Representations for Human Olfaction 2026-07-25 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.24848 False False 2607.21884 Model-based optimization of bacterial motility strategies for maximizing population yield 2026-07-24 cs.NA;math.NA;math.OC;q-bio.PE q-bio.PE https://arxiv.org/abs/2607.21884 False False 2607.22023 Hair is a functionally graded composite, not a uniform fiber 2026-07-24 physics.bio-ph;physics.mtrl-sci;q-bio.TO q-bio.TO https://arxiv.org/abs/2607.22023 False False 2607.22080 Short-Term Precision and Least Significant Change of 3D-DXA Cortical and Trabecular Proximal Femur Measurements Across Hologic DXA Scanner Models 2026-07-24 q-bio.QM q-bio.QM https://arxiv.org/abs/2607.22080 False False 2607.22097 Enumerating monophyletic characters in mathematical phylogenetics 2026-07-24 math.CO;q-bio.PE q-bio.PE https://arxiv.org/abs/2607.22097 False False 2607.22180 Cycles of Discourse, Speech Dysfluency, and Active Inference 2026-07-24 q-bio.NC q-bio.NC https://arxiv.org/abs/2607.22180 False False 2607.22275 NUMA balancing hampering performance of spiking network simulations 2026-07-24 cs.DC;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.22275 False False 2607.22318 On a cross coupling of Rulkov neural maps 2026-07-24 math.DS;physics.CD;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.22318 False False 2607.22397 Universal BCI Personalization: One API for Frozen EEG Trunks and Foundation Models 2026-07-24 cs.HC;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.22397 False False 2607.22504 Kidney function and kidney failure prediction in a large multiethnic population 2026-07-24 q-bio.QM q-bio.QM https://arxiv.org/abs/2607.22504 False False 2607.22505 Loom: Multi-Region Analysis of Spatial Transcriptomics with Local Neighborhoods and Global Trajectories 2026-07-24 cs.GR;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.22505 False False 2607.21884 Model-based optimization of bacterial motility strategies for maximizing population yield 2026-07-24 cs.NA;math.NA;math.OC;q-bio.PE q-bio.PE https://arxiv.org/abs/2607.21884 False False 2607.22023 Hair is a functionally graded composite, not a uniform fiber 2026-07-24 physics.bio-ph;physics.mtrl-sci;q-bio.TO q-bio.TO https://arxiv.org/abs/2607.22023 False False 2607.22080 Short-Term Precision and Least Significant Change of 3D-DXA Cortical and Trabecular Proximal Femur Measurements Across Hologic DXA Scanner Models 2026-07-24 q-bio.QM q-bio.QM https://arxiv.org/abs/2607.22080 False False 2607.22097 Enumerating monophyletic characters in mathematical phylogenetics 2026-07-24 math.CO;q-bio.PE q-bio.PE https://arxiv.org/abs/2607.22097 False False 2607.22180 Cycles of Discourse, Speech Dysfluency, and Active Inference 2026-07-24 q-bio.NC q-bio.NC https://arxiv.org/abs/2607.22180 False False 2607.22275 NUMA balancing hampering performance of spiking network simulations 2026-07-24 cs.DC;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.22275 False False 2607.22318 On a cross coupling of Rulkov neural maps 2026-07-24 math.DS;physics.CD;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.22318 False False 2607.22397 Universal BCI Personalization: One API for Frozen EEG Trunks and Foundation Models 2026-07-24 cs.HC;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.22397 False False 2607.22504 Kidney function and kidney failure prediction in a large multiethnic population 2026-07-24 q-bio.QM q-bio.QM https://arxiv.org/abs/2607.22504 False False 2607.22505 Loom: Multi-Region Analysis of Spatial Transcriptomics with Local Neighborhoods and Global Trajectories 2026-07-24 cs.HC;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.22505 False False 2607.22778 Subject-Level Heterogeneity in EEG Motor Imagery Decoding: A Large-Scale Benchmark and Portfolio-Based Reduction of the Search Space 2026-07-24 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.22778 False False 2607.22934 Amortized Bayesian Causal Discovery of Extended Factor Graphs 2026-07-24 cs.LG;q-bio.MN;stat.ML q-bio.MN https://arxiv.org/abs/2607.22934 False False 2607.22778 Subject-Level Heterogeneity in EEG Motor Imagery Decoding: A Large-Scale Benchmark and Portfolio-Based Reduction of the Search Space 2026-07-24 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.22778 False False 2607.22934 Amortized Bayesian Causal Discovery of Extended Factor Graphs 2026-07-24 cs.LG;q-bio.MN;stat.ML q-bio.MN https://arxiv.org/abs/2607.22934 False False 2607.22275 NUMA balancing hampering performance of spiking network simulations 2026-07-24 cs.DC;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.22275 False False 2607.22275 NUMA balancing hampering performance of spiking network simulations 2026-07-24 cs.DC;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.22275 False False 2607.22778 Subject-Level Heterogeneity in EEG Motor Imagery Decoding: A Large-Scale Benchmark and Portfolio-Based Reduction of the Search Space 2026-07-24 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.22778 False False 2607.22778 Subject-Level Heterogeneity in EEG Motor Imagery Decoding: A Large-Scale Benchmark and Portfolio-Based Reduction of the Search Space 2026-07-24 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.22778 False False 2607.22505 Loom: Multi-Region Analysis of Spatial Transcriptomics with Local Neighborhoods and Global Trajectories 2026-07-24 cs.HC;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.22505 False False 2607.20823 Fluctuation impossibility results for stochastic burst networks 2026-07-23 math.PR;q-bio.MN;q-bio.QM q-bio.MN https://arxiv.org/abs/2607.20823 False False 2607.20896 HierarchicalDAEW: Domain-Aware Edge-Weighted Graph Convolution with Evidential Uncertainty for Multi-Section Spatial Gene Expression Prediction from H&E Histology 2026-07-23 cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2607.20896 False False 2607.20915 Evolutionary Le Chatelier's Principle: Phenotypic Plasticity and Genetic Assimilation via Timescale Separation in the Price Equation 2026-07-23 physics.bio-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2607.20915 False False 2607.21214 A Kuramoto phase model to explore the synchronisation of a network of circadian clocks 2026-07-23 math.DS;q-bio.CB q-bio.CB https://arxiv.org/abs/2607.21214 False False 2607.21249 From Berg-Purcell precision bounds to clock-limited information capacity 2026-07-23 cs.IT;math.IT;q-bio.MN;stat.AP q-bio.MN https://arxiv.org/abs/2607.21249 False False 2607.21442 Local intercellular coupling is sufficient for long-range calcium signaling 2026-07-23 q-bio.CB q-bio.CB https://arxiv.org/abs/2607.21442 False False 2607.21561 Graph Learning on Ensembles of Cyclic Peptides: An Investigation of Molecular Ensemble Modeling 2026-07-23 cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2607.21561 False False 2607.20823 Fluctuation impossibility results for stochastic burst networks 2026-07-23 math.PR;q-bio.MN;q-bio.QM q-bio.MN https://arxiv.org/abs/2607.20823 False False 2607.20896 HierarchicalDAEW: Domain-Aware Edge-Weighted Graph Convolution with Evidential Uncertainty for Multi-Section Spatial Gene Expression Prediction from H&E Histology 2026-07-23 cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2607.20896 False False 2607.20915 Evolutionary Le Chatelier's Principle: Phenotypic Plasticity and Genetic Assimilation via Timescale Separation in the Price Equation 2026-07-23 physics.bio-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2607.20915 False False 2607.21214 A Kuramoto phase model to explore the synchronisation of a network of circadian clocks 2026-07-23 math.DS;q-bio.CB q-bio.CB https://arxiv.org/abs/2607.21214 False False 2607.21249 From Berg-Purcell precision bounds to clock-limited information capacity 2026-07-23 cs.IT;math.IT;q-bio.MN;stat.AP q-bio.MN https://arxiv.org/abs/2607.21249 False False 2607.21442 Local intercellular coupling is sufficient for long-range calcium signaling 2026-07-23 q-bio.CB q-bio.CB https://arxiv.org/abs/2607.21442 False False 2607.21561 Graph Learning on Ensembles of Cyclic Peptides: An Investigation of Molecular Ensemble Modeling 2026-07-23 cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2607.21561 False False 2607.21690 From biodiversity modelling to conservation action: a spatial indicator for prioritising tropical forest protection, restoration, and management 2026-07-23 q-bio.PE;q-bio.QM q-bio.PE https://arxiv.org/abs/2607.21690 False False 2607.21795 Dynamics Decomposition of Boolean Networks: An algebraic foundation 2026-07-23 cs.DM;math.RA;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.21795 0.78 0.7516 True 9 8.55 True 2607.21810 Quantifying reticulocyte biomechanics in health and disease 2026-07-23 physics.bio-ph;physics.soft;q-bio.CB;q-bio.QM;q-bio.TO q-bio.CB https://arxiv.org/abs/2607.21810 False False 2607.21690 From biodiversity modelling to conservation action: a spatial indicator for prioritising tropical forest protection, restoration, and management 2026-07-23 q-bio.PE;q-bio.QM q-bio.PE https://arxiv.org/abs/2607.21690 False False 2607.21795 Dynamics Decomposition of Boolean Networks: An algebraic foundation 2026-07-23 cs.DM;math.RA;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.21795 0.78 0.7516 True 9 8.55 True 2607.21810 Quantifying reticulocyte biomechanics in health and disease 2026-07-23 physics.bio-ph;physics.soft;q-bio.CB;q-bio.QM;q-bio.TO q-bio.CB https://arxiv.org/abs/2607.21810 False False 2607.22753 Real-time Reconstruction of Human Visual Perception from fMRI 2026-07-23 cs.AI;cs.CV;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.22753 False False 2607.22753 Real-time Reconstruction of Human Visual Perception from fMRI 2026-07-23 cs.AI;cs.CV;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.22753 False False 2607.24834 Foundation Models for EEG Are Blind to Long-Range Temporal Correlations: A Spectral-Temporal Dissociation Behind Their Cross-Population Fragility 2026-07-23 cs.AI;cs.ET;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.24834 False False 2607.24834 Foundation Models for EEG Are Blind to Long-Range Temporal Correlations: A Spectral-Temporal Dissociation Behind Their Cross-Population Fragility 2026-07-23 cs.AI;cs.ET;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.24834 False False 2607.24834 Cross-Cohort Spectral-Temporal Dissociation in Frozen EEG Foundation-Model Representations 2026-07-23 cs.AI;cs.ET;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.24834 False False 2607.24834 Cross-Cohort Spectral-Temporal Dissociation in Frozen EEG Foundation-Model Representations 2026-07-23 cs.AI;cs.ET;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.24834 False False 2607.19681 Perceived vertical and eye level as one orientation order parameter: a closed-form account of the Li-Matin rules for egocentric space 2026-07-22 q-bio.NC;stat.AP q-bio.NC https://arxiv.org/abs/2607.19681 False False 2607.19973 The Giant Hippocampus: From Structural Monoculture to a System of Systems 2026-07-22 cs.AI;cs.LG;cs.NE;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.19973 False False 2607.19982 Stability and feasibility of Microbial Consumer-Resource Model 2026-07-22 q-bio.PE q-bio.PE https://arxiv.org/abs/2607.19982 False False 2607.19990 Why I don't like the logistic equation 2026-07-22 q-bio.PE q-bio.PE https://arxiv.org/abs/2607.19990 False False 2607.20044 A Hybrid Framework for Uncertainty Quantification in Partially Observed Dynamic Biological Systems 2026-07-22 q-bio.QM q-bio.QM https://arxiv.org/abs/2607.20044 False False 2607.20057 Antigen-specific Antibody Multi-modal Foundation Model for Functional Antibody Design 2026-07-22 cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2607.20057 False False 2607.20163 Plausibility-Driven Prioritization of Candidate Biomedical Annotations 2026-07-22 cs.DB;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.20163 False False 2607.20215 Tensor analysis for lipid transport 2026-07-22 q-bio.QM q-bio.QM https://arxiv.org/abs/2607.20215 False False 2607.20250 A ProbLog program to infer individual genotypes from familial phenotypes in autosomal, X-linked, and Y-linked Mendelian disorders 2026-07-22 cs.LO;q-bio.PE q-bio.PE https://arxiv.org/abs/2607.20250 False False 2607.20306 State-Dependent Observation Noise Reintroduces Epistemic Value in Linear-Gaussian Active Inference 2026-07-22 cs.SY;eess.SY;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.20306 False False 2607.20307 When to Smell in Stereo 2026-07-22 q-bio.NC q-bio.NC https://arxiv.org/abs/2607.20307 False False 2607.20310 Capturing Inner Experience At Scale: An AI Interviewer Co-Developed with the Founder of a Landmark Phenomenological Method 2026-07-22 q-bio.NC q-bio.NC https://arxiv.org/abs/2607.20310 False False 2607.20323 Multi-modal transformer for signal classification in nanopore blockade experiments 2026-07-22 cs.LG;physics.comp-ph;q-bio.BM q-bio.BM https://arxiv.org/abs/2607.20323 False False 2607.20382 FMRP-LEAN: A HIPAA-Compliant AI-Augmented LIMS Architecture for End-to-End Clinical Assay Workflow Optimization 2026-07-22 cs.AI;cs.ET;cs.HC;physics.med-ph;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.20382 False False 2607.19681 Perceived vertical and eye level as one orientation order parameter: a closed-form account of the Li-Matin rules for egocentric space 2026-07-22 q-bio.NC;stat.AP q-bio.NC https://arxiv.org/abs/2607.19681 False False 2607.19973 The Giant Hippocampus: From Structural Monoculture to a System of Systems 2026-07-22 cs.AI;cs.LG;cs.NE;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.19973 False False 2607.19982 Stability and feasibility of Microbial Consumer-Resource Model 2026-07-22 q-bio.PE q-bio.PE https://arxiv.org/abs/2607.19982 False False 2607.19990 Why I don't like the logistic equation 2026-07-22 q-bio.PE q-bio.PE https://arxiv.org/abs/2607.19990 False False 2607.20044 A Hybrid Framework for Uncertainty Quantification in Partially Observed Dynamic Biological Systems 2026-07-22 q-bio.QM q-bio.QM https://arxiv.org/abs/2607.20044 False False 2607.20057 Antigen-specific Antibody Multi-modal Foundation Model for Functional Antibody Design 2026-07-22 cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2607.20057 False False 2607.20163 Plausibility-Driven Prioritization of Candidate Biomedical Annotations 2026-07-22 cs.DB;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.20163 False False 2607.20215 Tensor analysis for lipid transport 2026-07-22 q-bio.QM q-bio.QM https://arxiv.org/abs/2607.20215 False False 2607.20250 A ProbLog program to infer individual genotypes from familial phenotypes in autosomal, X-linked, and Y-linked Mendelian disorders 2026-07-22 cs.LO;q-bio.PE q-bio.PE https://arxiv.org/abs/2607.20250 False False 2607.20306 State-Dependent Observation Noise Reintroduces Epistemic Value in Linear-Gaussian Active Inference 2026-07-22 cs.SY;eess.SY;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.20306 False False 2607.20307 When to Smell in Stereo 2026-07-22 q-bio.NC q-bio.NC https://arxiv.org/abs/2607.20307 False False 2607.20310 Capturing Inner Experience At Scale: An AI Interviewer Co-Developed with the Founder of a Landmark Phenomenological Method 2026-07-22 q-bio.NC q-bio.NC https://arxiv.org/abs/2607.20310 False False 2607.20323 Multi-modal transformer for signal classification in nanopore blockade experiments 2026-07-22 cs.LG;physics.comp-ph;q-bio.BM q-bio.BM https://arxiv.org/abs/2607.20323 False False 2607.20382 FMRP-LEAN: A HIPAA-Compliant AI-Augmented LIMS Architecture for End-to-End Clinical Assay Workflow Optimization 2026-07-22 cs.AI;cs.ET;cs.HC;physics.med-ph;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.20382 False False 2607.20583 Foundation-model-guided radiogenomic discovery linking cancer genomes to cancer scans 2026-07-22 cs.AI;q-bio.GN q-bio.GN https://arxiv.org/abs/2607.20583 False False 2607.20585 Machine-Learned Compact Subspace Generation for Quantum Selected Configuration Interaction within Density Matrix Embedding Framework 2026-07-22 cs.ET;cs.LG;physics.chem-ph;physics.quant-ph;q-bio.BM q-bio.BM https://arxiv.org/abs/2607.20585 False False 2607.20699 Spectral theory for population density dynamics of spiking neurons with refractoriness 2026-07-22 math.MP;math.SP;physics.math-ph;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.20699 False False 2607.20708 Perspective Latents as an Architectural Condition for Causal Emergence in Active Inference Agents 2026-07-22 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.20708 False False 2607.20720 Transition-Related Potentials as Markers of Narrative Comprehension in Continuous EEG 2026-07-22 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.20720 False False 2607.20744 Analyzing \b{eta}-Lactamase Evolution from the Principle of Least Action Perspective 2026-07-22 q-bio.PE q-bio.PE https://arxiv.org/abs/2607.20744 False False 2607.20766 Importance-Sampling Estimation of Gaussian Molecular Shape Overlap: Exact Union Volumes and Confidence-Bounded Virtual Screening 2026-07-22 physics.chem-ph;q-bio.QM;stat.AP q-bio.QM https://arxiv.org/abs/2607.20766 False False 2607.20782 A Bayesian-optimization framework coupling a multiphase PDE tumor model to efficiently design combination therapy schedules 2026-07-22 q-bio.TO q-bio.TO https://arxiv.org/abs/2607.20782 0.7906 0.7998 True 5 5.9 False 2607.20583 Foundation-model-guided radiogenomic discovery linking cancer genomes to cancer scans 2026-07-22 cs.AI;q-bio.GN q-bio.GN https://arxiv.org/abs/2607.20583 False False 2607.20585 Machine-Learned Compact Subspace Generation for Quantum Selected Configuration Interaction within Density Matrix Embedding Framework 2026-07-22 cs.ET;cs.LG;physics.chem-ph;physics.quant-ph;q-bio.BM q-bio.BM https://arxiv.org/abs/2607.20585 False False 2607.20699 Spectral theory for population density dynamics of spiking neurons with refractoriness 2026-07-22 math.MP;math.SP;physics.math-ph;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.20699 False False 2607.20708 Perspective Latents as an Architectural Condition for Causal Emergence in Active Inference Agents 2026-07-22 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.20708 False False 2607.20720 Transition-Related Potentials as Markers of Narrative Comprehension in Continuous EEG 2026-07-22 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.20720 False False 2607.20744 Analyzing \b{eta}-Lactamase Evolution from the Principle of Least Action Perspective 2026-07-22 q-bio.PE q-bio.PE https://arxiv.org/abs/2607.20744 False False 2607.20766 Importance-Sampling Estimation of Gaussian Molecular Shape Overlap: Exact Union Volumes and Confidence-Bounded Virtual Screening 2026-07-22 physics.chem-ph;q-bio.QM;stat.AP q-bio.QM https://arxiv.org/abs/2607.20766 False False 2607.20782 A Bayesian-optimization framework coupling a multiphase PDE tumor model to efficiently design combination therapy schedules 2026-07-22 q-bio.TO q-bio.TO https://arxiv.org/abs/2607.20782 0.7906 0.7998 True 5 5.9 False 2607.21654 Computer Vision Based Neurology Brain Activity Rejection Architecture and Implementation 2026-07-22 cs.LG;physics.data-an;q-bio.NC;q-bio.QM q-bio.NC https://arxiv.org/abs/2607.21654 False False 2607.21657 Jointly estimating transmissibility and prior immunity from epidemic time series 2026-07-22 q-bio.PE;q-bio.QM q-bio.PE https://arxiv.org/abs/2607.21657 False False 2607.21654 Computer Vision Based Neurology Brain Activity Rejection Architecture and Implementation 2026-07-22 cs.LG;physics.data-an;q-bio.NC;q-bio.QM q-bio.NC https://arxiv.org/abs/2607.21654 False False 2607.21657 Jointly estimating transmissibility and prior immunity from epidemic time series 2026-07-22 q-bio.PE;q-bio.QM q-bio.PE https://arxiv.org/abs/2607.21657 False False 2607.20163 Plausibility-Driven Prioritization of Candidate Biomedical Annotations 2026-07-22 cs.DB;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.20163 False False 2607.20163 Plausibility-Driven Prioritization of Candidate Biomedical Annotations 2026-07-22 cs.DB;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.20163 False False 2607.18613 Additional Food Enhances the Bifurcation Structure of Predator Competition Models 2026-07-21 q-bio.PE q-bio.PE https://arxiv.org/abs/2607.18613 False False 2607.18645 A Reexamination of Noise-Driven Robustness Evolution in Gene Regulatory Networks 2026-07-21 physics.AO;q-bio.MN q-bio.MN https://arxiv.org/abs/2607.18645 False False 2607.18749 Is EEG-to-Text Feasible in Real-World Scenarios? An In-Depth Analysis Using a Neuropsychology-Inspired Benchmark 2026-07-21 cs.CL;cs.ET;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.18749 False False 2607.18777 PertReason: A Knowledge-Grounded Benchmark and Framework for Cell-State-Conditioned Mechanistic Reasoning of Perturbation Effects 2026-07-21 cs.LG;q-bio.MN q-bio.MN https://arxiv.org/abs/2607.18777 False False 2607.18809 Ecological networks of viable species with degree-dependent interaction 2026-07-21 physics.stat-mech;q-bio.PE q-bio.PE https://arxiv.org/abs/2607.18809 False False 2607.18923 Visual Semantic Decoding of Electrocorticography from Video Stimuli using End-to-End Deep Learning 2026-07-21 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.18923 False False 2607.18969 How the fly holds a single goal: normalization, not selection, in Drosophila FC2 2026-07-21 cs.NE;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.18969 False False 2607.19006 Subject-Conditioned Glucose Forecasting in Type-1 Diabetes 2026-07-21 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.19006 False False 2607.19020 Biological Amnesia in ICU Time-Series Prediction: A Drift-Adaptive Two-Stream Architecture with Temporal Retrieval 2026-07-21 cs.AI;cs.IR;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.19020 False False 2607.19083 GEqTrain: A Configuration-Driven Framework for Retargeting Equivariant Graph Neural Networks Across 3D Scientific Tasks 2026-07-21 cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2607.19083 False False 2607.19089 An unsupervised clustering analysis of breast cancer data derived from electronic health records enhanced through UMAP dimensionality reduction 2026-07-21 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.19089 False False 2607.19203 Evolutionary Entropy Shapes Lifespan of the Greenland Shar 2026-07-21 math.DS;q-bio.PE q-bio.PE https://arxiv.org/abs/2607.19203 False False 2607.19269 Multiscale hemodynamics model for the pulmonary arteries, arterioles, capillaries, venules and veins 2026-07-21 q-bio.TO q-bio.TO https://arxiv.org/abs/2607.19269 False False 2607.19316 Eccentricity-Constrained CNN Training Reveals Adaptive Information Coding Around the Visual Field 2026-07-21 q-bio.NC q-bio.NC https://arxiv.org/abs/2607.19316 False False 2607.18613 Additional Food Enhances the Bifurcation Structure of Predator Competition Models 2026-07-21 q-bio.PE q-bio.PE https://arxiv.org/abs/2607.18613 False False 2607.18645 A Reexamination of Noise-Driven Robustness Evolution in Gene Regulatory Networks 2026-07-21 physics.AO;q-bio.MN q-bio.MN https://arxiv.org/abs/2607.18645 False False 2607.18749 Is EEG-to-Text Feasible in Real-World Scenarios? An In-Depth Analysis Using a Neuropsychology-Inspired Benchmark 2026-07-21 cs.CL;cs.ET;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.18749 False False 2607.18777 PertReason: A Knowledge-Grounded Benchmark and Framework for Cell-State-Conditioned Mechanistic Reasoning of Perturbation Effects 2026-07-21 cs.LG;q-bio.MN q-bio.MN https://arxiv.org/abs/2607.18777 False False 2607.18809 Ecological networks of viable species with degree-dependent interaction 2026-07-21 physics.stat-mech;q-bio.PE q-bio.PE https://arxiv.org/abs/2607.18809 False False 2607.18923 Visual Semantic Decoding of Electrocorticography from Video Stimuli using End-to-End Deep Learning 2026-07-21 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.18923 False False 2607.18969 How the fly holds a single goal: normalization, not selection, in Drosophila FC2 2026-07-21 cs.NE;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.18969 False False 2607.19006 Subject-Conditioned Glucose Forecasting in Type-1 Diabetes 2026-07-21 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.19006 False False 2607.19020 Biological Amnesia in ICU Time-Series Prediction: A Drift-Adaptive Two-Stream Architecture with Temporal Retrieval 2026-07-21 cs.AI;cs.IR;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.19020 False False 2607.19083 GEqTrain: A Configuration-Driven Framework for Retargeting Equivariant Graph Neural Networks Across 3D Scientific Tasks 2026-07-21 cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2607.19083 False False 2607.19089 An unsupervised clustering analysis of breast cancer data derived from electronic health records enhanced through UMAP dimensionality reduction 2026-07-21 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.19089 False False 2607.19203 Evolutionary Entropy Shapes Lifespan of the Greenland Shar 2026-07-21 math.DS;q-bio.PE q-bio.PE https://arxiv.org/abs/2607.19203 False False 2607.19269 Multiscale hemodynamics model for the pulmonary arteries, arterioles, capillaries, venules and veins 2026-07-21 q-bio.TO q-bio.TO https://arxiv.org/abs/2607.19269 False False 2607.19316 Eccentricity-Constrained CNN Training Reveals Adaptive Information Coding Around the Visual Field 2026-07-21 q-bio.NC q-bio.NC https://arxiv.org/abs/2607.19316 False False 2607.19452 Markov state models revisited: Principles and algorithms for unbiased observables 2026-07-21 physics.chem-ph;physics.stat-mech;q-bio.BM q-bio.BM https://arxiv.org/abs/2607.19452 False False 2607.19600 Deep Shape Regression for Planar Curves with Multimodal Covariates 2026-07-21 cs.CV;cs.LG;q-bio.QM;stat.ME;stat.ML q-bio.QM https://arxiv.org/abs/2607.19600 False False 2607.19618 Causal dictionary learning reveals and validates transcription-factor binding features in genomic language models 2026-07-21 cs.AI;cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2607.19618 False False 2607.19452 Markov state models revisited: Principles and algorithms for unbiased observables 2026-07-21 physics.chem-ph;physics.stat-mech;q-bio.BM q-bio.BM https://arxiv.org/abs/2607.19452 False False 2607.19600 Deep Shape Regression for Planar Curves with Multimodal Covariates 2026-07-21 cs.CV;cs.LG;q-bio.QM;stat.ME;stat.ML q-bio.QM https://arxiv.org/abs/2607.19600 False False 2607.19618 Causal dictionary learning reveals and validates transcription-factor binding features in genomic language models 2026-07-21 cs.AI;cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2607.19618 False False 2607.20572 Auditing pretraining contamination in single-cell foundation model benchmarks 2026-07-21 q-bio.GN q-bio.GN https://arxiv.org/abs/2607.20572 False False 2607.20572 Auditing pretraining contamination in single-cell foundation model benchmarks 2026-07-21 q-bio.GN q-bio.GN https://arxiv.org/abs/2607.20572 False False 2607.19452 Markov state models revisited: Principles and algorithms for unbiased observables 2026-07-21 physics.chem-ph;physics.stat-mech;q-bio.BM q-bio.BM https://arxiv.org/abs/2607.19452 False False 2607.19452 Markov state models revisited: Principles and algorithms for unbiased observables 2026-07-21 physics.chem-ph;physics.stat-mech;q-bio.BM q-bio.BM https://arxiv.org/abs/2607.19452 False False 2607.19083 GEqTrain: A Configuration-Driven Framework for Retargeting Equivariant Graph Neural Networks Across 3D Scientific Tasks 2026-07-21 cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2607.19083 False False 2607.19083 GEqTrain: A Configuration-Driven Framework for Retargeting Equivariant Graph Neural Networks Across 3D Scientific Tasks 2026-07-21 cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2607.19083 False False 2607.19203 Evolutionary Entropy Shapes Lifespan of the Greenland Shark 2026-07-21 math.DS;q-bio.PE q-bio.PE https://arxiv.org/abs/2607.19203 False False 2607.17602 Exploring Brain Networks Using Noninvasive Electrophysiological Measurements: Methods and Applications 2026-07-20 math.MP;physics.math-ph;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.17602 False False 2607.17639 Direct Clinical Joint Angle Extraction from Parametric Body Model Rotation Matrices 2026-07-20 cs.CV;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.17639 False False 2607.17664 Graph-Induced Tensor Liftings for Networked SEIR Models: Dimensional Reduction and Residual Analysis 2026-07-20 cs.SY;eess.SY;math.DS;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.17664 False False 2607.17687 How genome redundancy can promote evolutionary innovation 2026-07-20 physics.bio-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2607.17687 False False 2607.17743 Feedback-mediated circulation and persistence of stochastic fluctuations in gene regulatory circuits 2026-07-20 physics.bio-ph;q-bio.MN q-bio.MN https://arxiv.org/abs/2607.17743 False False 2607.17753 The energy landscape of DNA-binding proteins along the genome 2026-07-20 q-bio.BM q-bio.BM https://arxiv.org/abs/2607.17753 False False 2607.18056 An Early Warning of Emerging Biosecurity Risks in Frontier LLMs 2026-07-20 cs.CL;q-bio.GN q-bio.GN https://arxiv.org/abs/2607.18056 False False 2607.18140 A Mathematical Model of Dengue Transmission Incorporating Hospital Capacity and Threshold-Based Fogging Interventions 2026-07-20 math.DS;q-bio.PE q-bio.PE https://arxiv.org/abs/2607.18140 False False 2607.17602 Exploring Brain Networks Using Noninvasive Electrophysiological Measurements: Methods and Applications 2026-07-20 math.MP;physics.math-ph;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.17602 False False 2607.17639 Direct Clinical Joint Angle Extraction from Parametric Body Model Rotation Matrices 2026-07-20 cs.CV;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.17639 False False 2607.17664 Graph-Induced Tensor Liftings for Networked SEIR Models: Dimensional Reduction and Residual Analysis 2026-07-20 cs.SY;eess.SY;math.DS;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.17664 False False 2607.17687 How genome redundancy can promote evolutionary innovation 2026-07-20 physics.bio-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2607.17687 False False 2607.17743 Feedback-mediated circulation and persistence of stochastic fluctuations in gene regulatory circuits 2026-07-20 physics.bio-ph;q-bio.MN q-bio.MN https://arxiv.org/abs/2607.17743 False False 2607.17753 The energy landscape of DNA-binding proteins along the genome 2026-07-20 q-bio.BM q-bio.BM https://arxiv.org/abs/2607.17753 False False 2607.18056 An Early Warning of Emerging Biosecurity Risks in Frontier LLMs 2026-07-20 cs.CL;q-bio.GN q-bio.GN https://arxiv.org/abs/2607.18056 False False 2607.18140 A Mathematical Model of Dengue Transmission Incorporating Hospital Capacity and Threshold-Based Fogging Interventions 2026-07-20 math.DS;q-bio.PE q-bio.PE https://arxiv.org/abs/2607.18140 False False 2607.18364 Evaluating the Impact of Epidemic Control via State-Dependent Markovian Switching Modeling 2026-07-20 math.PR;q-bio.PE;stat.ME q-bio.PE https://arxiv.org/abs/2607.18364 False False 2607.18428 Analysis of inter-spike interval statistics in neuronal networks with depolarizing and hyperpolarizing threshold potentials 2026-07-20 q-bio.NC q-bio.NC https://arxiv.org/abs/2607.18428 False False 2607.18434 Gravity-Driven Eco-Epidemiological Dynamics in Tri-Trophic Food Chains 2026-07-20 math.DS;physics.CD;physics.soc-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2607.18434 False False 2607.18460 Competitive and Complementary Tools 2026-07-20 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.18460 False False 2607.18468 Engineering T7 RNA Polymerase for High-Purity In Vitro Transcription 2026-07-20 q-bio.BM q-bio.BM https://arxiv.org/abs/2607.18468 False False 2607.18574 Conditioned Direct Feedback Alignment via Activity and Error Geometry 2026-07-20 cs.LG;cs.NE;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.18574 False False 2607.18364 Evaluating the Impact of Epidemic Control via State-Dependent Markovian Switching Modeling 2026-07-20 math.PR;q-bio.PE;stat.ME q-bio.PE https://arxiv.org/abs/2607.18364 False False 2607.18428 Analysis of inter-spike interval statistics in neuronal networks with depolarizing and hyperpolarizing threshold potentials 2026-07-20 q-bio.NC q-bio.NC https://arxiv.org/abs/2607.18428 False False 2607.18434 Gravity-Driven Eco-Epidemiological Dynamics in Tri-Trophic Food Chains 2026-07-20 math.DS;physics.CD;physics.soc-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2607.18434 False False 2607.18460 Competitive and Complementary Tools 2026-07-20 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.18460 False False 2607.18468 Engineering T7 RNA Polymerase for High-Purity In Vitro Transcription 2026-07-20 q-bio.BM q-bio.BM https://arxiv.org/abs/2607.18468 False False 2607.18574 Conditioned Direct Feedback Alignment via Activity and Error Geometry 2026-07-20 cs.LG;cs.NE;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.18574 False False 2607.19422 Aggregate models of liquidity-profit dynamics 2026-07-20 econ.TH;math.DS;q-bio.PE q-bio.PE https://arxiv.org/abs/2607.19422 False False 2607.19426 Making Single-Cell Data Distillation Auditable: Traceable Real-Cell Coresets via Discrete Min-Max Selection 2026-07-20 cs.AI;cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2607.19426 False False 2607.19422 Aggregate models of liquidity-profit dynamics 2026-07-20 econ.TH;math.DS;q-bio.PE q-bio.PE https://arxiv.org/abs/2607.19422 False False 2607.19426 Making Single-Cell Data Distillation Auditable: Traceable Real-Cell Coresets via Discrete Min-Max Selection 2026-07-20 cs.AI;cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2607.19426 False False 2607.18364 Evaluating the Impact of Epidemic Control via State-Dependent Markovian Switching Modeling 2026-07-20 math.PR;q-bio.PE;stat.ME q-bio.PE https://arxiv.org/abs/2607.18364 False False 2607.18434 Gravity-Driven Eco-Epidemiological Dynamics in Tri-Trophic Food Chains 2026-07-20 math.DS;physics.CD;physics.soc-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2607.18434 False False 2607.18364 Evaluating the Impact of Epidemic Control via State-Dependent Markovian Switching Modeling 2026-07-20 math.PR;q-bio.PE;stat.ME q-bio.PE https://arxiv.org/abs/2607.18364 False False 2607.18434 Gravity-Driven Eco-Epidemiological Dynamics in Tri-Trophic Food Chains 2026-07-20 math.DS;physics.CD;physics.soc-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2607.18434 False False 2607.19426 Making Single-Cell Data Distillation Auditable: Traceable Real-Cell Coresets via Discrete Min--Max Selection 2026-07-20 cs.AI;cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2607.19426 False False 2607.19426 Making Single-Cell Data Distillation Auditable: Traceable Real-Cell Coresets via Discrete Min--Max Selection 2026-07-20 cs.AI;cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2607.19426 False False 2607.18056 An Early Warning of Emerging Biosecurity Risks in Frontier LLMs 2026-07-20 cs.CL;q-bio.GN q-bio.GN https://arxiv.org/abs/2607.18056 False False 2607.18056 An Early Warning of Emerging Biosecurity Risks in Frontier LLMs 2026-07-20 cs.CL;q-bio.GN q-bio.GN https://arxiv.org/abs/2607.18056 False False 2607.18056 An Early Warning of Emerging Biosecurity Risks in Frontier LLMs 2026-07-20 cs.CL;q-bio.GN q-bio.GN https://arxiv.org/abs/2607.18056 False False 2607.17096 Network Characteristics of Individual Pigments in Cyanobacterial Photosystem II Core Complexes 2026-07-19 q-bio.BM q-bio.BM https://arxiv.org/abs/2607.17096 False False 2607.17227 Harmonised benchmarking of foundation models for single-cell and spatial transcriptomics reveals context-dependent generalisation 2026-07-19 q-bio.CB;q-bio.GN q-bio.CB https://arxiv.org/abs/2607.17227 False False 2607.17345 A multiverse-consensus pipeline for reproducible feature selection in untargeted LC-MS metabolomics 2026-07-19 cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2607.17345 False False 2607.17405 Evaluating Conformal Reliability of Pathway-Level Transcriptomic Signatures Under Cross-Cohort Shift in Sepsis Mortality Prediction 2026-07-19 q-bio.GN q-bio.GN https://arxiv.org/abs/2607.17405 False False 2607.17096 Network Characteristics of Individual Pigments in Cyanobacterial Photosystem II Core Complexes 2026-07-19 q-bio.BM q-bio.BM https://arxiv.org/abs/2607.17096 False False 2607.17227 Harmonised benchmarking of foundation models for single-cell and spatial transcriptomics reveals context-dependent generalisation 2026-07-19 q-bio.CB;q-bio.GN q-bio.CB https://arxiv.org/abs/2607.17227 False False 2607.17345 A multiverse-consensus pipeline for reproducible feature selection in untargeted LC-MS metabolomics 2026-07-19 cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2607.17345 False False 2607.17405 Evaluating Conformal Reliability of Pathway-Level Transcriptomic Signatures Under Cross-Cohort Shift in Sepsis Mortality Prediction 2026-07-19 q-bio.GN q-bio.GN https://arxiv.org/abs/2607.17405 False False 2607.16659 The Positive Experience Principle: Forecasting Conscious Choices with AI Embeddings 2026-07-18 q-bio.NC q-bio.NC https://arxiv.org/abs/2607.16659 False False 2607.16809 Evolutionary dynamics in public goods games with general frequency-dependent returns 2026-07-18 q-bio.PE q-bio.PE https://arxiv.org/abs/2607.16809 False False 2607.17000 Laboratory Trajectories Improve Kidney Failure Risk Estimation 2026-07-18 q-bio.QM q-bio.QM https://arxiv.org/abs/2607.17000 False False 2607.17004 Post-transcriptional Regulation of Stochastic Gene Expression Conditioned on Large Deviations 2026-07-18 q-bio.QM q-bio.QM https://arxiv.org/abs/2607.17004 False False 2607.16659 The Positive Experience Principle: Forecasting Conscious Choices with AI Embeddings 2026-07-18 q-bio.NC q-bio.NC https://arxiv.org/abs/2607.16659 False False 2607.16809 Evolutionary dynamics in public goods games with general frequency-dependent returns 2026-07-18 q-bio.PE q-bio.PE https://arxiv.org/abs/2607.16809 False False 2607.17000 Laboratory Trajectories Improve Kidney Failure Risk Estimation 2026-07-18 q-bio.QM q-bio.QM https://arxiv.org/abs/2607.17000 False False 2607.17004 Post-transcriptional Regulation of Stochastic Gene Expression Conditioned on Large Deviations 2026-07-18 q-bio.QM q-bio.QM https://arxiv.org/abs/2607.17004 False False 2607.19417 Enabling Rapid Calibration of BCI Systems that Detect Movement-Related Cortical Potentials in Children with Cerebral Palsy 2026-07-18 eess.SP;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.19417 False False 2607.19417 Enabling Rapid Calibration of BCI Systems that Detect Movement-Related Cortical Potentials in Children with Cerebral Palsy 2026-07-18 eess.SP;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.19417 False False 2607.15625 Classes of phylogenetic networks that are robust to root placement 2026-07-17 math.CO;q-bio.PE q-bio.PE https://arxiv.org/abs/2607.15625 False False 2607.15631 STSBench: A Large-Scale Dataset for Modeling Neuronal Activity in the Dorsal Stream of Primate Visual Cortex 2026-07-17 cs.CV;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.15631 False False 2607.15693 Toward a mechanistic understanding of inference in visual cortex and diffusion models 2026-07-17 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.15693 False False 2607.15836 Evolutionary path dependence of semantic complexity 2026-07-17 q-bio.PE q-bio.PE https://arxiv.org/abs/2607.15836 False False 2607.15975 A phenomenological multiscale framework for orientational interactions and viscoelasticity in migrating epithelial monolayers 2026-07-17 physics.bio-ph;physics.soft;q-bio.CB q-bio.CB https://arxiv.org/abs/2607.15975 False False 2607.16087 Neural spectroscopy of AlphaFold2 reveals encoded protein conformational landscapes 2026-07-17 cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2607.16087 False False 2607.15625 Classes of phylogenetic networks that are robust to root placement 2026-07-17 math.CO;q-bio.PE q-bio.PE https://arxiv.org/abs/2607.15625 False False 2607.15631 STSBench: A Large-Scale Dataset for Modeling Neuronal Activity in the Dorsal Stream of Primate Visual Cortex 2026-07-17 cs.CV;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.15631 False False 2607.15693 Toward a mechanistic understanding of inference in visual cortex and diffusion models 2026-07-17 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.15693 False False 2607.15836 Evolutionary path dependence of semantic complexity 2026-07-17 q-bio.PE q-bio.PE https://arxiv.org/abs/2607.15836 False False 2607.15975 A phenomenological multiscale framework for orientational interactions and viscoelasticity in migrating epithelial monolayers 2026-07-17 physics.bio-ph;physics.soft;q-bio.CB q-bio.CB https://arxiv.org/abs/2607.15975 False False 2607.16087 Neural spectroscopy of AlphaFold2 reveals encoded protein conformational landscapes 2026-07-17 cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2607.16087 False False 2607.16479 The Site Frequency Spectrum in an Exponentially-Growing Population with Selection 2026-07-17 math.PR;q-bio.PE q-bio.PE https://arxiv.org/abs/2607.16479 False False 2607.16517 Emergent topological structure in spontaneous brain-organoid activity 2026-07-17 physics.bio-ph;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.16517 False False 2607.16531 The Origins of Transient Bimodality 2026-07-17 physics.app-ph;physics.bio-ph;q-bio.PE;q-bio.SC q-bio.PE https://arxiv.org/abs/2607.16531 False False 2607.15989 Diffusion-induced instabilities promote cooperation in eco-evolutionary networks 2026-07-17 physics.AO;physics.CD;physics.soc-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2607.15989 False False 2607.16479 The Site Frequency Spectrum in an Exponentially-Growing Population with Selection 2026-07-17 math.PR;q-bio.PE q-bio.PE https://arxiv.org/abs/2607.16479 False False 2607.16517 Emergent topological structure in spontaneous brain-organoid activity 2026-07-17 physics.bio-ph;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.16517 False False 2607.16531 The Origins of Transient Bimodality 2026-07-17 physics.app-ph;physics.bio-ph;q-bio.PE;q-bio.SC q-bio.PE https://arxiv.org/abs/2607.16531 False False 2607.15989 Diffusion-induced instabilities promote cooperation in eco-evolutionary networks 2026-07-17 physics.AO;physics.CD;physics.soc-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2607.15989 False False 2607.18311 Approximating SPR Distance Between Phylogenetic Trees with Graph Neural Networks 2026-07-17 cs.AI;cs.LG;q-bio.PE q-bio.PE https://arxiv.org/abs/2607.18311 False False 2607.18311 Approximating SPR Distance Between Phylogenetic Trees with Graph Neural Networks 2026-07-17 cs.AI;cs.LG;q-bio.PE q-bio.PE https://arxiv.org/abs/2607.18311 False False 2607.19415 Auditing Retrieval-Augmented LLM Hypotheses for Longitudinal Cell Painting Morphology 2026-07-17 cs.AI;cs.CL;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.19415 False False 2607.19415 Auditing Retrieval-Augmented LLM Hypotheses for Longitudinal Cell Painting Morphology 2026-07-17 cs.AI;cs.CL;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.19415 False False 2607.16479 The Site Frequency Spectrum in an Exponentially-Growing Population with Selection 2026-07-17 math.PR;q-bio.PE q-bio.PE https://arxiv.org/abs/2607.16479 False False 2607.16479 The Site Frequency Spectrum in an Exponentially-Growing Population with Selection 2026-07-17 math.PR;q-bio.PE q-bio.PE https://arxiv.org/abs/2607.16479 False False 2607.24820 More Electrodes, Faster Minds? Rethinking Bandwidth in Brain-Computer Interfaces 2026-07-17 cs.HC;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.24820 False False 2607.24820 More Electrodes, Faster Minds? Rethinking Bandwidth in Brain-Computer Interfaces 2026-07-17 cs.HC;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.24820 False False 2607.14451 Memory-Driven Self-Propulsion and Flocking of Chemically Active Droplets 2026-07-16 physics.bio-ph;physics.soft;q-bio.BM q-bio.BM https://arxiv.org/abs/2607.14451 False False 2607.14457 A Validated Data-driven Subject and Vehicle Specific Nonlinear Biodynamic Model for Predicting Upper-Body Response in Vehicle Ride 2026-07-16 q-bio.TO q-bio.TO https://arxiv.org/abs/2607.14457 False False 2607.14653 Revisiting a random model of lateral gene transfer in phylogenetics 2026-07-16 q-bio.PE q-bio.PE https://arxiv.org/abs/2607.14653 False False 2607.14833 Thoughtseeds as Latent Causes: A Dual-Process Computational Phenomenology of Focused-Attention Meditation 2026-07-16 q-bio.NC q-bio.NC https://arxiv.org/abs/2607.14833 False False 2607.14914 Stochastic ultimatum game: Spite-driven resource feedback fosters fairness 2026-07-16 econ.TH;physics.AO;physics.bio-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2607.14914 False False 2607.14950 Emergence of polymorphism in stochastic evolutionary games 2026-07-16 q-bio.PE q-bio.PE https://arxiv.org/abs/2607.14950 False False 2607.14995 Multimodal Semantic-Aware Contrastive Learning For False Negative Mitigation in 3D Medical Imaging 2026-07-16 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.14995 False False 2607.15022 Topology-Informed Survival Analysis of Breast Cancer Patients Using the Mapper Algorithm 2026-07-16 math.GN;q-bio.GN q-bio.GN https://arxiv.org/abs/2607.15022 False False 2607.15104 A model with exposure in the epidemiological sense. Part 1 -- Base model 2026-07-16 q-bio.PE q-bio.PE https://arxiv.org/abs/2607.15104 False False 2607.14451 Memory-Driven Self-Propulsion and Flocking of Chemically Active Droplets 2026-07-16 physics.bio-ph;physics.soft;q-bio.BM q-bio.BM https://arxiv.org/abs/2607.14451 False False 2607.14457 A Validated Data-driven Subject and Vehicle Specific Nonlinear Biodynamic Model for Predicting Upper-Body Response in Vehicle Ride 2026-07-16 q-bio.TO q-bio.TO https://arxiv.org/abs/2607.14457 False False 2607.14653 Revisiting a random model of lateral gene transfer in phylogenetics 2026-07-16 q-bio.PE q-bio.PE https://arxiv.org/abs/2607.14653 False False 2607.14833 Thoughtseeds as Latent Causes: A Dual-Process Computational Phenomenology of Focused-Attention Meditation 2026-07-16 q-bio.NC q-bio.NC https://arxiv.org/abs/2607.14833 False False 2607.14914 Stochastic ultimatum game: Spite-driven resource feedback fosters fairness 2026-07-16 econ.TH;physics.AO;physics.bio-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2607.14914 False False 2607.14950 Emergence of polymorphism in stochastic evolutionary games 2026-07-16 q-bio.PE q-bio.PE https://arxiv.org/abs/2607.14950 False False 2607.14995 Multimodal Semantic-Aware Contrastive Learning For False Negative Mitigation in 3D Medical Imaging 2026-07-16 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.14995 False False 2607.15022 Topology-Informed Survival Analysis of Breast Cancer Patients Using the Mapper Algorithm 2026-07-16 math.GN;q-bio.GN q-bio.GN https://arxiv.org/abs/2607.15022 False False 2607.15104 A model with exposure in the epidemiological sense. Part 1 -- Base model 2026-07-16 q-bio.PE q-bio.PE https://arxiv.org/abs/2607.15104 False False 2607.15445 A New Method to Predict the Effect of an Intervention in the Host Population to Reduce the Magnitude of an Outbreak of a Vector-Borne Infection 2026-07-16 q-bio.PE q-bio.PE https://arxiv.org/abs/2607.15445 False False 2607.15463 BODIESReg: An Open-Source Pipeline for Registering 3D Body Scans Using Pose-Aligned Initialization 2026-07-16 q-bio.OT;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.15463 False False 2607.15445 A New Method to Predict the Effect of an Intervention in the Host Population to Reduce the Magnitude of an Outbreak of a Vector-Borne Infection 2026-07-16 q-bio.PE q-bio.PE https://arxiv.org/abs/2607.15445 False False 2607.15463 BODIESReg: An Open-Source Pipeline for Registering 3D Body Scans Using Pose-Aligned Initialization 2026-07-16 q-bio.OT;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.15463 False False 2607.18301 Long-term Coexistence of Epidemics and Risk Awareness: Impacts of Adaptive Human Response and Fatigue 2026-07-16 physics.soc-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2607.18301 False False 2607.18301 Long-term Coexistence of Epidemics and Risk Awareness: Impacts of Adaptive Human Response and Fatigue 2026-07-16 physics.soc-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2607.18301 False False 2607.13560 Grounded world models in biological organisms and future embodied AI 2026-07-15 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.13560 False False 2607.13644 Evaluating Encoding Strategies for Closed-Loop Classification in Biological Neural Networks 2026-07-15 cs.ET;cs.NE;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.13644 False False 2607.13994 Causal Discovery of Radiation Response Mechanisms in Human Cells 2026-07-15 q-bio.GN q-bio.GN https://arxiv.org/abs/2607.13994 False False 2607.14000 Activity Regeneration from Silent States in Neuronal Networks with Transient Synaptic Memory 2026-07-15 physics.dis-nn;physics.stat-mech;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.14000 False False 2607.14023 Exact Decomposition of Adversarial Dual-Objective Value Functions, with Applications to Optimal Drug Dosing 2026-07-15 cs.SY;eess.SY;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.14023 False False 2607.14070 Screening of Biosecurity Features in Metagenomic Data with Evo 2 Probes 2026-07-15 cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2607.14070 False False 2607.14078 A modular state-space model of human perception, cognition, and decision dynamics 2026-07-15 cs.SY;eess.SY;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.14078 False False 2607.14086 Leveraging unlabelled data for generalizable neural population decoding 2026-07-15 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.14086 False False 2607.13560 Grounded world models in biological organisms and future embodied AI 2026-07-15 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.13560 False False 2607.13644 Evaluating Encoding Strategies for Closed-Loop Classification in Biological Neural Networks 2026-07-15 cs.ET;cs.NE;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.13644 False False 2607.13994 Causal Discovery of Radiation Response Mechanisms in Human Cells 2026-07-15 q-bio.GN q-bio.GN https://arxiv.org/abs/2607.13994 False False 2607.14000 Activity Regeneration from Silent States in Neuronal Networks with Transient Synaptic Memory 2026-07-15 physics.dis-nn;physics.stat-mech;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.14000 False False 2607.14023 Exact Decomposition of Adversarial Dual-Objective Value Functions, with Applications to Optimal Drug Dosing 2026-07-15 cs.SY;eess.SY;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.14023 False False 2607.14070 Screening of Biosecurity Features in Metagenomic Data with Evo 2 Probes 2026-07-15 cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2607.14070 False False 2607.14086 Leveraging unlabelled data for generalizable neural population decoding 2026-07-15 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.14086 False False 2607.14163 A vision foundation model for single-cell biology via spatial gene cartography 2026-07-15 cs.CV;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.14163 False False 2607.14360 Infectious Disease Induces Emergent Oscillations, Extinction and Changes in Community Persistence in a Food Chain 2026-07-15 physics.CD;physics.soc-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2607.14360 False False 2607.14404 Analyzing Post-transcriptional Regulation in Stochastic Gene Expression Models Using Partitioned Poisson Arrivals 2026-07-15 q-bio.QM q-bio.QM https://arxiv.org/abs/2607.14404 False False 2607.14410 LATTICE: Graph Self-Supervised Learning for Multimodal Spatial Omics Integration 2026-07-15 cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2607.14410 False False 2607.14078 A modular state-space model of human perception, cognition, and decision dynamics 2026-07-15 cs.SY;eess.SY;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.14078 False False 2607.14163 A vision foundation model for single-cell biology via spatial gene cartography 2026-07-15 cs.CV;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.14163 False False 2607.14360 Infectious Disease Induces Emergent Oscillations, Extinction and Changes in Community Persistence in a Food Chain 2026-07-15 physics.CD;physics.soc-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2607.14360 False False 2607.14404 Analyzing Post-transcriptional Regulation in Stochastic Gene Expression Models Using Partitioned Poisson Arrivals 2026-07-15 q-bio.QM q-bio.QM https://arxiv.org/abs/2607.14404 False False 2607.14410 LATTICE: Graph Self-Supervised Learning for Multimodal Spatial Omics Integration 2026-07-15 cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2607.14410 False False 2607.14078 A modular state-space model of human perception, cognition, and decision dynamics 2026-07-15 cs.SY;eess.SY;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.14078 False False 2607.15308 Structural Compression for Phylogenetic Inference under Alignment Instability and Indel-Rich Evolution 2026-07-15 q-bio.PE;q-bio.QM q-bio.PE https://arxiv.org/abs/2607.15308 False False 2607.15309 DyneTrion: A Spatio-temporally Coherent Generative Emulator for Protein Dynamics Across Timescales 2026-07-15 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.15309 False False 2607.15308 Structural Compression for Phylogenetic Inference under Alignment Instability and Indel-Rich Evolution 2026-07-15 q-bio.PE;q-bio.QM q-bio.PE https://arxiv.org/abs/2607.15308 False False 2607.15309 DyneTrion: A Spatio-temporally Coherent Generative Emulator for Protein Dynamics Across Timescales 2026-07-15 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.15309 False False 2607.14410 LATTICE: Graph Self-Supervised Learning for Multimodal Spatial Omics Integration 2026-07-15 cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2607.14410 False False 2607.14410 LATTICE: Graph Self-Supervised Learning for Multimodal Spatial Omics Integration 2026-07-15 cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2607.14410 False False 2607.20551 SenCos-GEM: SENet-Calibrated and Law-of-Cosines-Constrained Geometry-Enhanced Molecular Representation for Property Prediction 2026-07-15 cs.AI;cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2607.20551 False False 2607.20551 SenCos-GEM: SENet-Calibrated and Law-of-Cosines-Constrained Geometry-Enhanced Molecular Representation for Property Prediction 2026-07-15 cs.AI;cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2607.20551 False False 2607.12382 Differentiable Clone-Structured Causal Graphs for End-to-End Cognitive Map Learning from Image Sequences 2026-07-14 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.12382 False False 2607.12673 Contrasting statistical patterns in melodic and molecular evolution reveal distinctive constraints in a culturally evolving system 2026-07-14 cs.SD;physics.soc-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2607.12673 False False 2607.12766 Entropy-Driven Initiation and Cellular Uptake Mediated by Viscoelastic Cytoskeleton: A Kinetic Phase Diagram from Onsager Variational Principle 2026-07-14 physics.bio-ph;physics.soft;physics.stat-mech;q-bio.SC q-bio.SC https://arxiv.org/abs/2607.12766 0.7258 0.8142 True 6 6.6 False 2607.12771 Learning Mechanistic Reasoning for Chemical Reactions with Large Language Models 2026-07-14 cs.CE;cs.CL;cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2607.12771 False False 2607.12864 Can deleterious mutations surf deterministic population waves? 2026-07-14 math.AP;math.PR;q-bio.PE q-bio.PE https://arxiv.org/abs/2607.12864 False False 2607.12874 Metric-Guided Synthetic Image Data Rendering for Deep Learning compatible with Agentic AI 2026-07-14 cs.CV;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.12874 False False 2607.12909 Real-time fall detection based on vision for low-power edge platforms 2026-07-14 cs.AI;cs.CV;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.12909 False False 2607.12919 On Tree-Network Distinguishability and Full Identifiability of Phylogenetic Networks 2026-07-14 q-bio.PE q-bio.PE https://arxiv.org/abs/2607.12919 False False 2607.12930 Optimal photostimulation selection for iterative activity maps 2026-07-14 q-bio.NC;q-bio.QM q-bio.NC https://arxiv.org/abs/2607.12930 False False 2607.12382 Differentiable Clone-Structured Causal Graphs for End-to-End Cognitive Map Learning from Image Sequences 2026-07-14 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.12382 False False 2607.12673 Contrasting statistical patterns in melodic and molecular evolution reveal distinctive constraints in a culturally evolving system 2026-07-14 cs.SD;physics.soc-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2607.12673 False False 2607.12766 Entropy-Driven Initiation and Cellular Uptake Mediated by Viscoelastic Cytoskeleton: A Kinetic Phase Diagram from Onsager Variational Principle 2026-07-14 physics.bio-ph;physics.soft;physics.stat-mech;q-bio.SC q-bio.SC https://arxiv.org/abs/2607.12766 0.7258 0.8142 True 6 6.6 False 2607.12771 Learning Mechanistic Reasoning for Chemical Reactions with Large Language Models 2026-07-14 cs.CE;cs.CL;cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2607.12771 False False 2607.12864 Can deleterious mutations surf deterministic population waves? 2026-07-14 math.AP;math.PR;q-bio.PE q-bio.PE https://arxiv.org/abs/2607.12864 False False 2607.12874 Metric-Guided Synthetic Image Data Rendering for Deep Learning compatible with Agentic AI 2026-07-14 cs.CV;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.12874 False False 2607.12909 Real-time fall detection based on vision for low-power edge platforms 2026-07-14 cs.AI;cs.CV;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.12909 False False 2607.12919 On Tree-Network Distinguishability and Full Identifiability of Phylogenetic Networks 2026-07-14 q-bio.PE q-bio.PE https://arxiv.org/abs/2607.12919 False False 2607.12930 Optimal photostimulation selection for iterative activity maps 2026-07-14 q-bio.NC;q-bio.QM q-bio.NC https://arxiv.org/abs/2607.12930 False False 2607.13216 Classifying daily activities needs posture, reconstructing them needs motion 2026-07-14 cs.AI;cs.IR;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.13216 False False 2607.13281 Predator-dependent replicator dynamics or a predator-prey model with two prey types and frequency dependence 2026-07-14 q-bio.PE q-bio.PE https://arxiv.org/abs/2607.13281 False False 2607.13309 Fundamental Relation between Conductance of Biomolecules and the Fukui Function 2026-07-14 physics.bio-ph;physics.mes-hall;physics.mtrl-sci;physics.soft;q-bio.BM q-bio.BM https://arxiv.org/abs/2607.13309 False False 2607.13216 Classifying daily activities needs posture, reconstructing them needs motion 2026-07-14 cs.AI;cs.IR;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.13216 False False 2607.13281 Predator-dependent replicator dynamics or a predator-prey model with two prey types and frequency dependence 2026-07-14 q-bio.PE q-bio.PE https://arxiv.org/abs/2607.13281 False False 2607.13309 Fundamental Relation between Conductance of Biomolecules and the Fukui Function 2026-07-14 physics.bio-ph;physics.mes-hall;physics.mtrl-sci;physics.soft;q-bio.BM q-bio.BM https://arxiv.org/abs/2607.13309 False False 2607.12771 Learning Mechanistic Reasoning for Chemical Reactions with Large Language Models 2026-07-14 cs.CE;cs.CL;cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2607.12771 False False 2607.12766 Entropy-Driven Initiation and Cellular Uptake Mediated by Viscoelastic Cytoskeleton: A Kinetic Phase Diagram from Onsager Variational Principle 2026-07-14 physics.bio-ph;physics.soft;physics.stat-mech;q-bio.SC q-bio.SC https://arxiv.org/abs/2607.12766 0.7258 0.8142 True 6 6.6 False 2607.12766 Entropy-Driven Initiation and Cellular Uptake Mediated by Viscoelastic Cytoskeleton: A Kinetic Phase Diagram from Onsager Variational Principle 2026-07-14 physics.bio-ph;physics.soft;physics.stat-mech;q-bio.SC q-bio.SC https://arxiv.org/abs/2607.12766 0.7258 0.8142 True 6 6.6 False 2607.12771 Learning Mechanistic Reasoning for Chemical Reactions with Large Language Models 2026-07-14 cs.CE;cs.CL;cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2607.12771 False False 2607.12919 On Tree-Network Distinguishability and Full Identifiability of Phylogenetic Networks 2026-07-14 q-bio.PE q-bio.PE https://arxiv.org/abs/2607.12919 False False 2607.12919 On Tree-Network Distinguishability and Full Identifiability of Phylogenetic Networks 2026-07-14 q-bio.PE q-bio.PE https://arxiv.org/abs/2607.12919 False False 2607.11011 Branching-Time Signatures of Growth Regime in Tumor Birth-Death Models 2026-07-13 math.PR;q-bio.PE q-bio.PE https://arxiv.org/abs/2607.11011 False False 2607.11091 Adapting Evidential Neural Networks to Test-Time Neighbor Fusion Improves Molecular Property Prediction 2026-07-13 cs.LG;q-bio.BM;stat.ML q-bio.BM https://arxiv.org/abs/2607.11091 False False 2607.11291 Metacommunity persistence on spatially heterogeneous landscapes 2026-07-13 math.DS;q-bio.PE q-bio.PE https://arxiv.org/abs/2607.11291 False False 2607.11306 Optimal Control of Pandemic Dynamics via Model Predictive Control: A Health-Economic Trade-off Analysis 2026-07-13 cs.SY;eess.SY;math.OC;q-bio.PE q-bio.PE https://arxiv.org/abs/2607.11306 False False 2607.11325 Proximity Measures for Classes of Phylogenetic Networks 2026-07-13 cs.DM;math.CO;q-bio.PE q-bio.PE https://arxiv.org/abs/2607.11325 False False 2607.11520 Stochastic individual-bases models 2026-07-13 math.PR;q-bio.PE q-bio.PE https://arxiv.org/abs/2607.11520 False False 2607.11535 Introducing entropy measures to PK/PD models in propofol anesthesia as a replacement of BIS 2026-07-13 q-bio.QM q-bio.QM https://arxiv.org/abs/2607.11535 False False 2607.11656 Imputation-free transformer learning enables robust Alzheimer's disease prediction and calibrated uncertainty quantification across heterogeneous clinical cohorts 2026-07-13 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.11656 False False 2607.11697 Targeting DNA Methylation: New Paradigms and the Advent of Gene-Selective Tools 2026-07-13 q-bio.SC q-bio.SC https://arxiv.org/abs/2607.11697 False False 2607.11820 A quantitative model for the emergent population dynamics of the melanoma MITF rheostat 2026-07-13 q-bio.CB q-bio.CB https://arxiv.org/abs/2607.11820 False False 2607.11011 Branching-Time Signatures of Growth Regime in Tumor Birth-Death Models 2026-07-13 math.PR;q-bio.PE q-bio.PE https://arxiv.org/abs/2607.11011 False False 2607.11091 Adapting Evidential Neural Networks to Test-Time Neighbor Fusion Improves Molecular Property Prediction 2026-07-13 cs.LG;q-bio.BM;stat.ML q-bio.BM https://arxiv.org/abs/2607.11091 False False 2607.11291 Metacommunity persistence on spatially heterogeneous landscapes 2026-07-13 math.DS;q-bio.PE q-bio.PE https://arxiv.org/abs/2607.11291 False False 2607.11306 Optimal Control of Pandemic Dynamics via Model Predictive Control: A Health-Economic Trade-off Analysis 2026-07-13 cs.SY;eess.SY;math.OC;q-bio.PE q-bio.PE https://arxiv.org/abs/2607.11306 False False 2607.11325 Proximity Measures for Classes of Phylogenetic Networks 2026-07-13 cs.DM;math.CO;q-bio.PE q-bio.PE https://arxiv.org/abs/2607.11325 False False 2607.11520 Stochastic individual-bases models 2026-07-13 math.PR;q-bio.PE q-bio.PE https://arxiv.org/abs/2607.11520 False False 2607.11535 Introducing entropy measures to PK/PD models in propofol anesthesia as a replacement of BIS 2026-07-13 q-bio.QM q-bio.QM https://arxiv.org/abs/2607.11535 False False 2607.11697 Targeting DNA Methylation: New Paradigms and the Advent of Gene-Selective Tools 2026-07-13 q-bio.SC q-bio.SC https://arxiv.org/abs/2607.11697 False False 2607.11820 A quantitative model for the emergent population dynamics of the melanoma MITF rheostat 2026-07-13 q-bio.CB q-bio.CB https://arxiv.org/abs/2607.11820 False False 2607.12093 Harvesting Reshapes Dynamical Populations 2026-07-13 physics.comp-ph;physics.stat-mech;q-bio.PE q-bio.PE https://arxiv.org/abs/2607.12093 False False 2607.12196 AlphaFunctor: Bridging The Gap Between Protein Function Annotation and Property Prediction 2026-07-13 q-bio.BM q-bio.BM https://arxiv.org/abs/2607.12196 False False 2607.11656 Imputation-free transformer learning enables robust Alzheimer's disease prediction and calibrated uncertainty quantification across heterogeneous clinical cohorts 2026-07-13 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.11656 False False 2607.12093 Harvesting Reshapes Dynamical Populations 2026-07-13 physics.comp-ph;physics.stat-mech;q-bio.PE q-bio.PE https://arxiv.org/abs/2607.12093 False False 2607.12196 AlphaFunctor: Bridging The Gap Between Protein Function Annotation and Property Prediction 2026-07-13 q-bio.BM q-bio.BM https://arxiv.org/abs/2607.12196 False False 2607.11656 Imputation-free transformer learning enables robust Alzheimer's disease prediction and calibrated uncertainty quantification across heterogeneous clinical cohorts 2026-07-13 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.11656 False False 2607.11291 Metacommunity persistence on spatially heterogeneous landscapes 2026-07-13 math.DS;q-bio.PE q-bio.PE https://arxiv.org/abs/2607.11291 False False 2607.11291 Metacommunity persistence on spatially heterogeneous landscapes 2026-07-13 math.DS;q-bio.PE q-bio.PE https://arxiv.org/abs/2607.11291 False False 2607.11820 A quantitative model for the emergent population dynamics of the melanoma MITF rheostat 2026-07-13 q-bio.CB q-bio.CB https://arxiv.org/abs/2607.11820 False False 2607.11820 A quantitative model for the emergent population dynamics of the melanoma MITF rheostat 2026-07-13 q-bio.CB q-bio.CB https://arxiv.org/abs/2607.11820 False False 2607.10646 Enhanced diffusion of colloidal tracers due to enzymatic activity 2026-07-12 physics.bio-ph;physics.soft;q-bio.BM q-bio.BM https://arxiv.org/abs/2607.10646 False False 2607.10729 Scaffold splits hide structural-frontier failures in ADMET models 2026-07-12 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.10729 False False 2607.10734 Life in a tight spot: Coupled dynamics of bacteria and soil across scales 2026-07-12 physics.bio-ph;physics.geo-ph;physics.soft;q-bio.PE q-bio.PE https://arxiv.org/abs/2607.10734 False False 2607.10838 On the Existence of Almost Periodic Solutions with Applications to Global Entrainment 2026-07-12 cs.SY;eess.SY;math.DS;math.OC;q-bio.PE q-bio.PE https://arxiv.org/abs/2607.10838 False False 2607.10887 Transferable Implicit Solvent Machine Learning Potential for Drugs and Proteins Approaching Ab Initio Accuracy 2026-07-12 cs.LG;physics.chem-ph;q-bio.BM q-bio.BM https://arxiv.org/abs/2607.10887 False False 2607.10903 Sandscapes: self-modifying energy landscapes with emergent branching and flips 2026-07-12 q-bio.QM q-bio.QM https://arxiv.org/abs/2607.10903 False False 2607.10931 Fast Whole-Brain, Geometry-Aware Functional Alignment for Cross-Subject Decoding 2026-07-12 cs.LG;q-bio.NC;stat.ML q-bio.NC https://arxiv.org/abs/2607.10931 False False 2607.10646 Enhanced diffusion of colloidal tracers due to enzymatic activity 2026-07-12 physics.bio-ph;physics.soft;q-bio.BM q-bio.BM https://arxiv.org/abs/2607.10646 False False 2607.10729 Scaffold splits hide structural-frontier failures in ADMET models 2026-07-12 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.10729 False False 2607.10734 Life in a tight spot: Coupled dynamics of bacteria and soil across scales 2026-07-12 physics.bio-ph;physics.geo-ph;physics.soft;q-bio.PE q-bio.PE https://arxiv.org/abs/2607.10734 False False 2607.10838 On the Existence of Almost Periodic Solutions with Applications to Global Entrainment 2026-07-12 cs.SY;eess.SY;math.DS;math.OC;q-bio.PE q-bio.PE https://arxiv.org/abs/2607.10838 False False 2607.10887 Transferable Implicit Solvent Machine Learning Potential for Drugs and Proteins Approaching Ab Initio Accuracy 2026-07-12 cs.LG;physics.chem-ph;q-bio.BM q-bio.BM https://arxiv.org/abs/2607.10887 False False 2607.10903 Sandscapes: self-modifying energy landscapes with emergent branching and flips 2026-07-12 q-bio.QM q-bio.QM https://arxiv.org/abs/2607.10903 False False 2607.10931 Fast Whole-Brain, Geometry-Aware Functional Alignment for Cross-Subject Decoding 2026-07-12 cs.LG;q-bio.NC;stat.ML q-bio.NC https://arxiv.org/abs/2607.10931 False False 2607.11958 Constructed Reality, Contested Priors: Decoupling and the Architecture of Cognitive Relapse Under the Free Energy Principle 2026-07-12 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.11958 False False 2607.11958 Constructed Reality, Contested Priors: Decoupling and the Architecture of Cognitive Relapse Under the Free Energy Principle 2026-07-12 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.11958 False False 2607.10729 Beyond Scaffold Splits: Structural-Frontier Evaluation Reveals Hidden Failures in ADMET Models 2026-07-12 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.10729 False False 2607.10729 Beyond Scaffold Splits: Structural-Frontier Evaluation Reveals Hidden Failures in ADMET Models 2026-07-12 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.10729 False False 2607.10729 Beyond Scaffold Splits: Structural-Frontier Evaluation Reveals Hidden Failures in ADMET Models 2026-07-12 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.10729 False False 2607.10729 Beyond Scaffold Splits: Structural-Frontier Evaluation Reveals Hidden Failures in ADMET Models 2026-07-12 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.10729 False False 2607.10430 Emergent Generalization by Representation Learning in Artificial Neural Networks 2026-07-11 cs.IT;cs.LG;cs.NE;math.IT;physics.CD;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.10430 False False 2607.10439 Learning the Brain's Dynamics as a Port-Hamiltonian System 2026-07-11 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.10439 False False 2607.10451 Threat Vectors and the State of the Art in Defense Methods for Security in Neurotechnology 2026-07-11 cs.CR;cs.ET;cs.HC;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.10451 False False 2607.10430 Emergent Generalization by Representation Learning in Artificial Neural Networks 2026-07-11 cs.IT;cs.LG;cs.NE;math.IT;physics.CD;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.10430 False False 2607.10439 Learning the Brain's Dynamics as a Port-Hamiltonian System 2026-07-11 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.10439 False False 2607.10451 Threat Vectors and the State of the Art in Defense Methods for Security in Neurotechnology 2026-07-11 cs.CR;cs.ET;cs.HC;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.10451 False False 2607.10439 Learning the Brain's Dynamics as a Port-Hamiltonian System: A GNN-Surrogate Metriplectic Twin for Non-Equilibrium Cortical Dynamics and Closed-Loop Neuromodulation 2026-07-11 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.10439 False False 2607.11950 The RG-Flow Transformer: Encoding Scale-Free Dynamics in Scarce EEG 2026-07-11 cs.AI;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.11950 False False 2607.10439 Learning the Brain's Dynamics as a Port-Hamiltonian System: A GNN-Surrogate Metriplectic Twin for Non-Equilibrium Cortical Dynamics and Closed-Loop Neuromodulation 2026-07-11 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.10439 False False 2607.11950 The RG-Flow Transformer: Encoding Scale-Free Dynamics in Scarce EEG 2026-07-11 cs.AI;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.11950 False False 2607.10439 A Physics-Inspired Classical Digital Twin of Cortical Dynamics: A Band-Stratified Metriplectic Port-Hamiltonian Neural Network Learned from Brain-Computer-Interface EEG 2026-07-11 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.10439 False False 2607.10439 A Physics-Inspired Classical Digital Twin of Cortical Dynamics: A Band-Stratified Metriplectic Port-Hamiltonian Neural Network Learned from Brain-Computer-Interface EEG 2026-07-11 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.10439 False False 2607.09032 Quantum Logic as the Logic of Contexts 2026-07-10 cs.AI;math.LO;physics.quant-ph;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.09032 False False 2607.09039 Variable-Length Generative Protein Design via Generalized Poisson Flow 2026-07-10 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.09039 False False 2607.09137 Comprehensive identifiability analysis and reliable parameter estimation for an SEIR model 2026-07-10 q-bio.PE;q-bio.QM;stat.ME q-bio.PE https://arxiv.org/abs/2607.09137 False False 2607.09278 Structural Brain Predictors of Visual Attention Gradient Modulated by Trait Anxiety 2026-07-10 q-bio.NC q-bio.NC https://arxiv.org/abs/2607.09278 False False 2607.09296 Coupled chemotactic fronts in heterogeneous sensor-consumer cell mixtures 2026-07-10 q-bio.CB q-bio.CB https://arxiv.org/abs/2607.09296 False False 2607.09420 PesTwin: A modular agent-based framework for pest and vector population control 2026-07-10 q-bio.PE q-bio.PE https://arxiv.org/abs/2607.09420 False False 2607.09516 A multi-ensemble mean-field reduction method for networks of globally coupled phase oscillators with arbitrary parameter distributions 2026-07-10 physics.CD;physics.dis-nn;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.09516 False False 2607.09543 CoCoT-EEG: Contrastive-Pretrained Multiscale Convolutional Transformer for EEG Decoding 2026-07-10 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.09543 False False 2607.09662 PHINN-EEG: Topological Time-Series Analysis of Dream-State EEG -- Dynamic Betti Curves for Dream Content Classification and Topology-Conditioned Neural Signal Synthesis 2026-07-10 cs.AI;cs.LG;eess.SP;math.AT;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.09662 False False 2607.09032 Quantum Logic as the Logic of Contexts 2026-07-10 cs.AI;math.LO;physics.quant-ph;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.09032 False False 2607.09039 Variable-Length Generative Protein Design via Generalized Poisson Flow 2026-07-10 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.09039 False False 2607.09137 Comprehensive identifiability analysis and reliable parameter estimation for an SEIR model 2026-07-10 q-bio.PE;q-bio.QM;stat.ME q-bio.PE https://arxiv.org/abs/2607.09137 False False 2607.09278 Structural Brain Predictors of Visual Attention Gradient Modulated by Trait Anxiety 2026-07-10 q-bio.NC q-bio.NC https://arxiv.org/abs/2607.09278 False False 2607.09296 Coupled chemotactic fronts in heterogeneous sensor-consumer cell mixtures 2026-07-10 q-bio.CB q-bio.CB https://arxiv.org/abs/2607.09296 False False 2607.09420 PesTwin: A modular agent-based framework for pest and vector population control 2026-07-10 q-bio.PE q-bio.PE https://arxiv.org/abs/2607.09420 False False 2607.09516 A multi-ensemble mean-field reduction method for networks of globally coupled phase oscillators with arbitrary parameter distributions 2026-07-10 physics.CD;physics.dis-nn;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.09516 False False 2607.09543 CoCoT-EEG: Contrastive-Pretrained Multiscale Convolutional Transformer for EEG Decoding 2026-07-10 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.09543 False False 2607.09662 PHINN-EEG: Topological Time-Series Analysis of Dream-State EEG -- Dynamic Betti Curves for Dream Content Classification and Topology-Conditioned Neural Signal Synthesis 2026-07-10 cs.AI;cs.LG;eess.SP;math.AT;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.09662 False False 2607.09838 G2P Explorer: A Native iOS Framework for Residue-Level Genomics to Proteomics Visualization and Structural Variant Interpretation 2026-07-10 q-bio.QM q-bio.QM https://arxiv.org/abs/2607.09838 False False 2607.09872 A Differential Framework for Dynamic Programming in Biological Sequence Analysis 2026-07-10 q-bio.QM q-bio.QM https://arxiv.org/abs/2607.09872 False False 2607.09876 Prompting-MammAlps: Fine-Grained Text-to-Video Retrieval for Camera-Trap Data 2026-07-10 cs.AI;cs.CV;q-bio.NC;q-bio.QM q-bio.NC https://arxiv.org/abs/2607.09876 False False 2607.09998 Vilya-1: An all-atom foundation model for macrocycle structure prediction and design 2026-07-10 cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2607.09998 False False 2607.09838 G2P Explorer: A Native iOS Framework for Residue-Level Genomics to Proteomics Visualization and Structural Variant Interpretation 2026-07-10 q-bio.QM q-bio.QM https://arxiv.org/abs/2607.09838 False False 2607.09872 A Differential Framework for Dynamic Programming in Biological Sequence Analysis 2026-07-10 q-bio.QM q-bio.QM https://arxiv.org/abs/2607.09872 False False 2607.09876 Prompting-MammAlps: Fine-Grained Text-to-Video Retrieval for Camera-Trap Data 2026-07-10 cs.AI;cs.CV;q-bio.NC;q-bio.QM q-bio.NC https://arxiv.org/abs/2607.09876 False False 2607.09998 Vilya-1: An all-atom foundation model for macrocycle structure prediction and design 2026-07-10 cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2607.09998 False False 2607.09516 A multi-ensemble mean-field reduction method for networks of globally coupled phase oscillators with arbitrary parameter distributions 2026-07-10 physics.CD;physics.dis-nn;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.09516 False False 2607.09516 A multi-ensemble mean-field reduction method for networks of globally coupled phase oscillators with arbitrary parameter distributions 2026-07-10 physics.CD;physics.dis-nn;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.09516 False False 2607.24807 A Path Integral Model of Cognition 2026-07-10 cs.AI;physics.quant-ph;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.24807 False False 2607.24808 EEG Emotion Recognition From AI-Generated Biodigital Architecture Images 2026-07-10 cs.AI;cs.HC;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.24808 False False 2607.24807 A Path Integral Model of Cognition 2026-07-10 cs.AI;physics.quant-ph;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.24807 False False 2607.24808 EEG Emotion Recognition From AI-Generated Biodigital Architecture Images 2026-07-10 cs.AI;cs.HC;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.24808 False False 2607.09872 From Derivatives to Exact Sequence Substitution Effects in Dynamic Programming for Biological Sequence Analysis 2026-07-10 q-bio.QM q-bio.QM https://arxiv.org/abs/2607.09872 False False 2607.09872 From Derivatives to Exact Sequence Substitution Effects in Dynamic Programming for Biological Sequence Analysis 2026-07-10 q-bio.QM q-bio.QM https://arxiv.org/abs/2607.09872 False False 2607.08302 A Non-Hermitian Potential Well Formalism for Conscious--Preconscious--Subliminal Processing 2026-07-09 physics.AO;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.08302 False False 2607.08344 Impact of Nirsevimab prophylaxis on RSV dynamics: a stage-structured modelling study 2026-07-09 math.DS;q-bio.PE q-bio.PE https://arxiv.org/abs/2607.08344 False False 2607.08404 DrugGen 2: A disease-aware language model for enhancing drug discovery 2026-07-09 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.08404 False False 2607.08561 Contravariance Theory: Strong Alignment for Minimal Solutions to Hard Tasks 2026-07-09 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.08561 False False 2607.08302 A Non-Hermitian Potential Well Formalism for Conscious--Preconscious--Subliminal Processing 2026-07-09 physics.AO;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.08302 False False 2607.08344 Impact of Nirsevimab prophylaxis on RSV dynamics: a stage-structured modelling study 2026-07-09 math.DS;q-bio.PE q-bio.PE https://arxiv.org/abs/2607.08344 False False 2607.08404 DrugGen 2: A disease-aware language model for enhancing drug discovery 2026-07-09 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.08404 False False 2607.08561 Contravariance Theory: Strong Alignment for Minimal Solutions to Hard Tasks 2026-07-09 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.08561 False False 2607.08803 TheBioCollection: Unified Pre-Training Scale LLM Corpus for Biology 2026-07-09 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.08803 False False 2607.08855 Spatial Neighboring Scattering Transform: A Cross-Channel Amplitude Coupling Measure for EEG Connectivity 2026-07-09 eess.SP;q-bio.NC;stat.AP q-bio.NC https://arxiv.org/abs/2607.08855 False False 2607.08902 Model Predictive Controller to Regulate Cortisol Levels in Individuals With Adrenal Insufficiency 2026-07-09 cs.SY;eess.SY;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.08902 False False 2607.08803 TheBioCollection: Unified Pre-Training Scale LLM Corpus for Biology 2026-07-09 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.08803 False False 2607.08855 Spatial Neighboring Scattering Transform: A Cross-Channel Amplitude Coupling Measure for EEG Connectivity 2026-07-09 eess.SP;q-bio.NC;stat.AP q-bio.NC https://arxiv.org/abs/2607.08855 False False 2607.08902 Model Predictive Controller to Regulate Cortisol Levels in Individuals With Adrenal Insufficiency 2026-07-09 cs.SY;eess.SY;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.08902 False False 2607.08803 TheBioCollection: Unified Pre-Training Scale LLM Corpus for Biology 2026-07-09 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.08803 False False 2607.08803 TheBioCollection: Unified Pre-Training Scale LLM Corpus for Biology 2026-07-09 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.08803 False False 2607.20523 FISHER: Gradient-Decoupled Hierarchical Multi-Task Learning for Fine-Grained Aquatic Species Recognition 2026-07-09 eess.IV;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.20523 False False 2607.20523 FISHER: Gradient-Decoupled Hierarchical Multi-Task Learning for Fine-Grained Aquatic Species Recognition 2026-07-09 eess.IV;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.20523 False False 2607.08561 Contravariance Theory: Strong Alignment for Minimal Solutions to Hard Tasks 2026-07-09 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.08561 False False 2607.08561 Contravariance Theory: Strong Alignment for Minimal Solutions to Hard Tasks 2026-07-09 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.08561 False False 2607.07000 Dimension-dependent continuum limits in tissue mechanics 2026-07-08 physics.CG;physics.bio-ph;physics.comp-ph;q-bio.TO q-bio.TO https://arxiv.org/abs/2607.07000 0.7608 0.8148 True 8 8.0 True 2607.07186 Enhanced sampling and cryo-EM data resolve magnesium binding to RNA 2026-07-08 physics.bio-ph;physics.comp-ph;q-bio.BM q-bio.BM https://arxiv.org/abs/2607.07186 False False 2607.07336 Resource-Efficient Hybrid Quantum Neighborhood Selection for Large-Scale Molecular Diversity Optimization 2026-07-08 cs.ET;math.OC;physics.quant-ph;q-bio.BM q-bio.BM https://arxiv.org/abs/2607.07336 False False 2607.07352 Bayesian Learning of Distance Metrics Beyond RMSD for Biomolecule Alignment, Clustering, and Domain Identification 2026-07-08 physics.stat-mech;q-bio.BM q-bio.BM https://arxiv.org/abs/2607.07352 False False 2607.07425 Reliable mechanistic operator recovery with biologically-informed neural networks: principles for architecture and optimisation design 2026-07-08 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.07425 False False 2607.07429 Single-Entity Spiking Neuron Models: Survey 2026-07-08 cs.NE;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.07429 0.7741 0.768 True 5 3.8 False 2607.07453 Collaborate to decorrelate in path space: Hamiltonian replica exchange transition interface sampling (HRETIS) 2026-07-08 physics.chem-ph;physics.comp-ph;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.07453 False False 2607.07543 Equivalence testing in pesticide risk assessment -- Evaluation and practical guidance for design, analysis and interpretation 2026-07-08 q-bio.PE;q-bio.QM;stat.ME q-bio.PE https://arxiv.org/abs/2607.07543 False False 2607.07578 Directional bias of a single polarized cell under confinement 2026-07-08 physics.bio-ph;q-bio.CB q-bio.CB https://arxiv.org/abs/2607.07578 False False 2607.07666 A hierarchical memory architecture overcomes context limits in long-horizon multi-agent computational modeling 2026-07-08 cs.MA;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.07666 False False 2607.07677 Rethinking the Choice Behavior of Sugar Metabolism in Bacteria 2026-07-08 q-bio.MN;q-bio.QM q-bio.MN https://arxiv.org/abs/2607.07677 False False 2607.07000 Dimension-dependent continuum limits in tissue mechanics 2026-07-08 physics.CG;physics.bio-ph;physics.comp-ph;q-bio.TO q-bio.TO https://arxiv.org/abs/2607.07000 0.7608 0.8148 True 8 8.0 True 2607.07186 Enhanced sampling and cryo-EM data resolve magnesium binding to RNA 2026-07-08 physics.bio-ph;physics.comp-ph;q-bio.BM q-bio.BM https://arxiv.org/abs/2607.07186 False False 2607.07336 Resource-Efficient Hybrid Quantum Neighborhood Selection for Large-Scale Molecular Diversity Optimization 2026-07-08 cs.ET;math.OC;physics.quant-ph;q-bio.BM q-bio.BM https://arxiv.org/abs/2607.07336 False False 2607.07352 Bayesian Learning of Distance Metrics Beyond RMSD for Biomolecule Alignment, Clustering, and Domain Identification 2026-07-08 physics.stat-mech;q-bio.BM q-bio.BM https://arxiv.org/abs/2607.07352 False False 2607.07425 Reliable mechanistic operator recovery with biologically-informed neural networks: principles for architecture and optimisation design 2026-07-08 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.07425 False False 2607.07429 Single-Entity Spiking Neuron Models: Survey 2026-07-08 cs.NE;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.07429 0.7741 0.768 True 5 3.8 False 2607.07453 Collaborate to decorrelate in path space: Hamiltonian replica exchange transition interface sampling (HRETIS) 2026-07-08 physics.chem-ph;physics.comp-ph;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.07453 False False 2607.07543 Equivalence testing in pesticide risk assessment -- Evaluation and practical guidance for design, analysis and interpretation 2026-07-08 q-bio.PE;q-bio.QM;stat.ME q-bio.PE https://arxiv.org/abs/2607.07543 False False 2607.07578 Directional bias of a single polarized cell under confinement 2026-07-08 physics.bio-ph;q-bio.CB q-bio.CB https://arxiv.org/abs/2607.07578 False False 2607.07666 A hierarchical memory architecture overcomes context limits in long-horizon multi-agent computational modeling 2026-07-08 cs.MA;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.07666 False False 2607.07677 Rethinking the Choice Behavior of Sugar Metabolism in Bacteria 2026-07-08 q-bio.MN;q-bio.QM q-bio.MN https://arxiv.org/abs/2607.07677 False False 2607.07749 Projected Energy Matching for Generative 3D Priors 2026-07-08 eess.IV;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.07749 False False 2607.07866 UMA-Inverse: Ligand-Conditioned Protein Inverse Folding with a Distogram-Supervised Dense Pair Encoder 2026-07-08 q-bio.BM q-bio.BM https://arxiv.org/abs/2607.07866 False False 2607.07749 Projected Energy Matching for Generative 3D Priors 2026-07-08 eess.IV;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.07749 False False 2607.07866 UMA-Inverse: Ligand-Conditioned Protein Inverse Folding with a Distogram-Supervised Dense Pair Encoder 2026-07-08 q-bio.BM q-bio.BM https://arxiv.org/abs/2607.07866 False False 2607.08799 HemoPIC: A Physics-Informed Cerebral Hemodynamics Digital Twin for Brain Perfusion 2026-07-08 eess.IV;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.08799 False False 2607.08799 HemoPIC: A Physics-Informed Cerebral Hemodynamics Digital Twin for Brain Perfusion 2026-07-08 eess.IV;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.08799 False False 2607.07666 A hierarchical memory architecture overcomes context limits in long-horizon multi-agent computational modeling 2026-07-08 cs.MA;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.07666 False False 2607.07677 Rethinking the Choice Behavior of Sugar Metabolism in Bacteria 2026-07-08 q-bio.MN;q-bio.QM q-bio.MN https://arxiv.org/abs/2607.07677 False False 2607.07666 A hierarchical memory architecture overcomes context limits in long-horizon multi-agent computational modeling 2026-07-08 cs.MA;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.07666 False False 2607.07677 Rethinking the Choice Behavior of Sugar Metabolism in Bacteria 2026-07-08 q-bio.MN;q-bio.QM q-bio.MN https://arxiv.org/abs/2607.07677 False False 2607.07677 Rethinking the Choice Behavior of Sugar Metabolism in Bacteria 2026-07-08 q-bio.MN;q-bio.QM q-bio.MN https://arxiv.org/abs/2607.07677 False False 2607.07666 A hierarchical memory architecture overcomes context limits in long-horizon multi-agent computational modeling 2026-07-08 cs.MA;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.07666 False False 2607.07666 A hierarchical memory architecture overcomes context limits in long-horizon multi-agent computational modeling 2026-07-08 cs.MA;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.07666 False False 2607.24806 Decoding Error-Related Potentials under Multisensory Feedback with Varying Congruency 2026-07-08 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.24806 False False 2607.24806 Decoding Error-Related Potentials under Multisensory Feedback with Varying Congruency 2026-07-08 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.24806 False False 2608.04024 Influence of passenger head-position uncertainty on infection risk predictions 2026-07-08 q-bio.QM q-bio.QM https://arxiv.org/abs/2608.04024 False False 2608.04024 Influence of passenger head-position uncertainty on infection risk predictions 2026-07-08 q-bio.QM q-bio.QM https://arxiv.org/abs/2608.04024 False False 2607.05740 Network amplification of dengue declines as endemicity rises: climate-adjusted directional spread across Costa Rican cantons, 1993-2012 2026-07-07 q-bio.PE q-bio.PE https://arxiv.org/abs/2607.05740 False False 2607.05820 Continuum modeling of fluidic and elastic flow during growth-driven wound closure in partial-EMT cell monolayers 2026-07-07 physics.bio-ph;physics.flu-dyn;q-bio.TO q-bio.TO https://arxiv.org/abs/2607.05820 False False 2607.05822 Using hierarchical statistical learning models to model individual statistical learning 2026-07-07 q-bio.NC q-bio.NC https://arxiv.org/abs/2607.05822 False False 2607.05846 AbICL: In-Context Learning for Antigen-Specific Antibody Affinity Ranking 2026-07-07 cs.AI;cs.CE;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.05846 False False 2607.06129 Characterization of DLBCL cell of origin-phenotypes based on tumor microenvironment features 2026-07-07 q-bio.QM q-bio.QM https://arxiv.org/abs/2607.06129 False False 2607.06225 Compiling Bioinformatics Recurrences 2026-07-07 cs.PL;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.06225 False False 2607.06235 Modeling the Impact of Immune Boosting on Population-Level Vaccine Effectiveness 2026-07-07 q-bio.PE q-bio.PE https://arxiv.org/abs/2607.06235 False False 2607.06284 Quantifying Entrainment Evidence: A Comparison of Frequentist and Bayesian Approaches for Information Processing Pathway Maps 2026-07-07 q-bio.NC;stat.AP q-bio.NC https://arxiv.org/abs/2607.06284 False False 2607.06497 EntroPath: Maximum Entropy Path Ensemble Embedding for Manifold Learning 2026-07-07 cs.LG;q-bio.QM;stat.ML q-bio.QM https://arxiv.org/abs/2607.06497 False False 2607.05740 Network amplification of dengue declines as endemicity rises: climate-adjusted directional spread across Costa Rican cantons, 1993-2012 2026-07-07 q-bio.PE q-bio.PE https://arxiv.org/abs/2607.05740 False False 2607.05820 Continuum modeling of fluidic and elastic flow during growth-driven wound closure in partial-EMT cell monolayers 2026-07-07 physics.bio-ph;physics.flu-dyn;q-bio.TO q-bio.TO https://arxiv.org/abs/2607.05820 False False 2607.05822 Using hierarchical statistical learning models to model individual statistical learning 2026-07-07 q-bio.NC q-bio.NC https://arxiv.org/abs/2607.05822 False False 2607.05846 AbICL: In-Context Learning for Antigen-Specific Antibody Affinity Ranking 2026-07-07 cs.AI;cs.CE;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.05846 False False 2607.06129 Characterization of DLBCL cell of origin-phenotypes based on tumor microenvironment features 2026-07-07 q-bio.QM q-bio.QM https://arxiv.org/abs/2607.06129 False False 2607.06225 Compiling Bioinformatics Recurrences 2026-07-07 cs.PL;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.06225 False False 2607.06235 Modeling the Impact of Immune Boosting on Population-Level Vaccine Effectiveness 2026-07-07 q-bio.PE q-bio.PE https://arxiv.org/abs/2607.06235 False False 2607.06284 Quantifying Entrainment Evidence: A Comparison of Frequentist and Bayesian Approaches for Information Processing Pathway Maps 2026-07-07 q-bio.NC;stat.AP q-bio.NC https://arxiv.org/abs/2607.06284 False False 2607.06497 EntroPath: Maximum Entropy Path Ensemble Embedding for Manifold Learning 2026-07-07 cs.LG;q-bio.QM;stat.ML q-bio.QM https://arxiv.org/abs/2607.06497 False False 2607.06626 Reward Valuation in Vision Language Models: Causal Mechanisms Underlying Anhedonia 2026-07-07 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.06626 False False 2607.06629 STST-JEPA: Shallow-Target Spatio-Temporal Joint Embedding Prediction Architecture For EEG Self-Supervised Learning 2026-07-07 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.06629 False False 2607.06732 Selection Mechanisms, Stationary Distributions, and Reversibility in Multiallelic Moran Models 2026-07-07 q-bio.PE q-bio.PE https://arxiv.org/abs/2607.06732 False False 2607.06626 Reward Valuation in Vision Language Models: Causal Mechanisms Underlying Anhedonia 2026-07-07 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.06626 False False 2607.06732 Selection Mechanisms, Stationary Distributions, and Reversibility in Multiallelic Moran Models 2026-07-07 q-bio.PE q-bio.PE https://arxiv.org/abs/2607.06732 False False 2607.06629 STST-JEPA: Shallow-Target Spatio-Temporal Joint Embedding Prediction Architecture For EEG Self-Supervised Learning 2026-07-07 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.06629 False False 2607.06629 STST-JEPA: Shallow-Target Spatio-Temporal Joint Embedding Prediction Architecture For EEG Self-Supervised Learning 2026-07-07 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.06629 False False 2607.20513 Magnetosensitivity of amphibian morphological pigmentation is light- and eye-dependent and consistent with the radical pair mechanism 2026-07-07 physics.bio-ph;physics.quant-ph;q-bio.TO q-bio.TO https://arxiv.org/abs/2607.20513 False False 2607.20513 Magnetosensitivity of amphibian morphological pigmentation is light- and eye-dependent and consistent with the radical pair mechanism 2026-07-07 physics.bio-ph;physics.quant-ph;q-bio.TO q-bio.TO https://arxiv.org/abs/2607.20513 False False 2607.28655 Geographically Weighted Surrogate Models for Rapid Small-Area Chronic Disease Estimation 2026-07-07 cs.LG;q-bio.QM;stat.AP q-bio.QM https://arxiv.org/abs/2607.28655 False False 2607.28655 Geographically Weighted Surrogate Models for Rapid Small-Area Chronic Disease Estimation 2026-07-07 cs.LG;q-bio.QM;stat.AP q-bio.QM https://arxiv.org/abs/2607.28655 False False 2607.04557 Predicting Therapeutic Outcome via Aligning Patient-Specific Knowledge Graph and Gene-Level Perturbation Representations 2026-07-06 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.04557 False False 2607.04595 Score Distributions, Not Cells: Evaluating Single-Cell Perturbations Under Class Overlap 2026-07-06 cs.LG;q-bio.QM;stat.ML q-bio.QM https://arxiv.org/abs/2607.04595 False False 2607.04810 Disguised complex balance via positive algebraic geometry 2026-07-06 math.AG;math.DS;q-bio.MN q-bio.MN https://arxiv.org/abs/2607.04810 False False 2607.04938 Parenclitic hypergraphs and their application in personalized cancer therapy 2026-07-06 physics.soc-ph;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.04938 False False 2607.04987 Data-Driven Soft Labeling Scales DNA Read Classification to Whole-Body Cell-Type Deconvolution 2026-07-06 cs.LG;q-bio.GN;q-bio.QM q-bio.GN https://arxiv.org/abs/2607.04987 False False 2607.05084 Rethinking Benchmarks and Models for Enzyme Specificity Prediction 2026-07-06 q-bio.BM q-bio.BM https://arxiv.org/abs/2607.05084 False False 2607.05153 Geometric Causal Models 2026-07-06 cs.LG;q-bio.BM;stat.ML q-bio.BM https://arxiv.org/abs/2607.05153 False False 2607.04557 Predicting Therapeutic Outcome via Aligning Patient-Specific Knowledge Graph and Gene-Level Perturbation Representations 2026-07-06 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.04557 False False 2607.04595 Score Distributions, Not Cells: Evaluating Single-Cell Perturbations Under Class Overlap 2026-07-06 cs.LG;q-bio.QM;stat.ML q-bio.QM https://arxiv.org/abs/2607.04595 False False 2607.04810 Disguised complex balance via positive algebraic geometry 2026-07-06 math.AG;math.DS;q-bio.MN q-bio.MN https://arxiv.org/abs/2607.04810 False False 2607.04938 Parenclitic hypergraphs and their application in personalized cancer therapy 2026-07-06 physics.soc-ph;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.04938 False False 2607.04987 Data-Driven Soft Labeling Scales DNA Read Classification to Whole-Body Cell-Type Deconvolution 2026-07-06 cs.LG;q-bio.GN;q-bio.QM q-bio.GN https://arxiv.org/abs/2607.04987 False False 2607.05084 Rethinking Benchmarks and Models for Enzyme Specificity Prediction 2026-07-06 q-bio.BM q-bio.BM https://arxiv.org/abs/2607.05084 False False 2607.05153 Geometric Causal Models 2026-07-06 cs.LG;q-bio.BM;stat.ML q-bio.BM https://arxiv.org/abs/2607.05153 False False 2607.05463 Governable Individuals: An Identity Layer for Embodied Agents That Keep Learning 2026-07-06 q-bio.NC q-bio.NC https://arxiv.org/abs/2607.05463 False False 2607.05586 Three Centuries of the Laws of Cricket Reveal Core Principles of the Evolution of Regulatory Mechanisms 2026-07-06 physics.app-ph;physics.soc-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2607.05586 False False 2607.05607 ssys: Exact algebraic recasting of ODE models into S-system or GMA form 2026-07-06 q-bio.QM q-bio.QM https://arxiv.org/abs/2607.05607 False False 2607.05654 On the Increased and Decreased Connectivity of the Demented Human Brain 2026-07-06 q-bio.NC q-bio.NC https://arxiv.org/abs/2607.05654 False False 2607.05691 Where to cut, how deep: BPE and Unigram-LM on chemistry SMILES 2026-07-06 cs.CL;cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2607.05691 False False 2607.05463 Governable Individuals: An Identity Layer for Embodied Agents That Keep Learning 2026-07-06 q-bio.NC q-bio.NC https://arxiv.org/abs/2607.05463 False False 2607.05586 Three Centuries of the Laws of Cricket Reveal Core Principles of the Evolution of Regulatory Mechanisms 2026-07-06 physics.app-ph;physics.soc-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2607.05586 False False 2607.05607 ssys: Exact algebraic recasting of ODE models into S-system or GMA form 2026-07-06 q-bio.QM q-bio.QM https://arxiv.org/abs/2607.05607 False False 2607.05654 On the Increased and Decreased Connectivity of the Demented Human Brain 2026-07-06 q-bio.NC q-bio.NC https://arxiv.org/abs/2607.05654 False False 2607.05691 Where to cut, how deep: BPE and Unigram-LM on chemistry SMILES 2026-07-06 cs.CL;cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2607.05691 False False 2607.06591 Polynomial encoding of rooted trees with branch lengths 2026-07-06 math.CO;q-bio.PE q-bio.PE https://arxiv.org/abs/2607.06591 False False 2607.04987 Data-Driven Soft Labeling Scales DNA Read Classification to Whole-Body Cell-Type Deconvolution 2026-07-06 cs.LG;q-bio.GN;q-bio.QM q-bio.GN https://arxiv.org/abs/2607.04987 False False 2607.04987 Data-Driven Soft Labeling Scales DNA Read Classification to Whole-Body Cell-Type Deconvolution 2026-07-06 cs.LG;q-bio.GN;q-bio.QM q-bio.GN https://arxiv.org/abs/2607.04987 False False 2607.06591 Polynomial encoding of rooted trees with branch lengths 2026-07-06 math.CO;q-bio.PE q-bio.PE https://arxiv.org/abs/2607.06591 False False 2607.05153 Geometric Causal Models 2026-07-06 cs.LG;q-bio.BM;stat.ML q-bio.BM https://arxiv.org/abs/2607.05153 False False 2607.05153 Geometric Causal Models 2026-07-06 cs.LG;q-bio.BM;stat.ML q-bio.BM https://arxiv.org/abs/2607.05153 False False 2607.05463 Governable Individuals: An Identity Layer for Embodied Agents That Keep Learning 2026-07-06 q-bio.NC q-bio.NC https://arxiv.org/abs/2607.05463 False False 2607.05463 Governable Individuals: An Identity Layer for Embodied Agents That Keep Learning 2026-07-06 q-bio.NC q-bio.NC https://arxiv.org/abs/2607.05463 False False 2607.19400 Predictive single cell foundation model for gene regulation and aging with privacy-preserving tabular learning 2026-07-06 cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2607.19400 False False 2607.19400 Predictive single cell foundation model for gene regulation and aging with privacy-preserving tabular learning 2026-07-06 cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2607.19400 False False 2607.24805 Forgetting Is Not a Fix: Path Dependence in Sequential Engram Editing 2026-07-06 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.24805 False False 2607.24805 Forgetting Is Not a Fix: Path Dependence in Sequential Engram Editing 2026-07-06 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.24805 False False 2607.04063 Learning Biophysical Models of Large-Scale Multineuronal Data to Enable Precise Neurostimulation 2026-07-05 q-bio.NC q-bio.NC https://arxiv.org/abs/2607.04063 False False 2607.04114 Sodium Allostasis: A New Paradigm for Understanding Cardiovascular Volume Accommodation 2026-07-05 q-bio.TO q-bio.TO https://arxiv.org/abs/2607.04114 False False 2607.04134 Spectral Diffusion for Protein Dynamics 2026-07-05 q-bio.BM;q-bio.QM q-bio.BM https://arxiv.org/abs/2607.04134 False False 2607.04160 A Collision-based strategy for Network-free Exploration of Complex Molecular Networks 2026-07-05 q-bio.MN q-bio.MN https://arxiv.org/abs/2607.04160 False False 2607.04204 A loser in both environments can survive by switching between them 2026-07-05 physics.bio-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2607.04204 False False 2607.04240 Biological Motifs for Agentic Control 2026-07-05 cs.AI;q-bio.CB q-bio.CB https://arxiv.org/abs/2607.04240 False False 2607.04253 Diffusion bridge with randomized initial and terminal times and its application to fish migration 2026-07-05 math.PR;q-bio.PE q-bio.PE https://arxiv.org/abs/2607.04253 False False 2607.04456 Mathematical Model of Evolution of Non-Degenerate Replicator Systems 2026-07-05 math.DS;math.OC;q-bio.PE q-bio.PE https://arxiv.org/abs/2607.04456 0.7881 0.7952 True 6 7.2 False 2607.04493 Beyond DSA: Conjugacy-based Comparison of Dynamical Systems 2026-07-05 math.DS;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.04493 False False 2607.04527 Causal ASCEND: Scalable Two-tier Causal Discovery on High Dimensional Multi-omics Data 2026-07-05 cs.LG;q-bio.GN;stat.ML q-bio.GN https://arxiv.org/abs/2607.04527 False False 2607.04063 Learning Biophysical Models of Large-Scale Multineuronal Data to Enable Precise Neurostimulation 2026-07-05 q-bio.NC q-bio.NC https://arxiv.org/abs/2607.04063 False False 2607.04114 Sodium Allostasis: A New Paradigm for Understanding Cardiovascular Volume Accommodation 2026-07-05 q-bio.TO q-bio.TO https://arxiv.org/abs/2607.04114 False False 2607.04134 Spectral Diffusion for Protein Dynamics 2026-07-05 q-bio.BM;q-bio.QM q-bio.BM https://arxiv.org/abs/2607.04134 False False 2607.04160 A Collision-based strategy for Network-free Exploration of Complex Molecular Networks 2026-07-05 q-bio.MN q-bio.MN https://arxiv.org/abs/2607.04160 False False 2607.04204 A loser in both environments can survive by switching between them 2026-07-05 physics.bio-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2607.04204 False False 2607.04240 Biological Motifs for Agentic Control 2026-07-05 cs.AI;q-bio.CB q-bio.CB https://arxiv.org/abs/2607.04240 False False 2607.04253 Diffusion bridge with randomized initial and terminal times and its application to fish migration 2026-07-05 math.PR;q-bio.PE q-bio.PE https://arxiv.org/abs/2607.04253 False False 2607.04456 Mathematical Model of Evolution of Non-Degenerate Replicator Systems 2026-07-05 math.DS;math.OC;q-bio.PE q-bio.PE https://arxiv.org/abs/2607.04456 0.7881 0.7952 True 6 7.2 False 2607.04493 Beyond DSA: Conjugacy-based Comparison of Dynamical Systems 2026-07-05 math.DS;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.04493 False False 2607.04527 Causal ASCEND: Scalable Two-tier Causal Discovery on High Dimensional Multi-omics Data 2026-07-05 cs.LG;q-bio.GN;stat.ML q-bio.GN https://arxiv.org/abs/2607.04527 False False 2607.05456 Prompt-to-Paper: Agentic AI System for Bioinformatics 2026-07-05 cs.AI;cs.CL;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.05456 False False 2607.05456 Prompt-to-Paper: Agentic AI System for Bioinformatics 2026-07-05 cs.AI;cs.CL;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.05456 False False 2607.04527 Causal ASCEND: Scalable Two-tier Causal Discovery on High Dimensional Multi-omics Data 2026-07-05 cs.LG;q-bio.GN;stat.ML q-bio.GN https://arxiv.org/abs/2607.04527 False False 2607.04527 Causal ASCEND: Scalable Two-tier Causal Discovery on High Dimensional Multi-omics Data 2026-07-05 cs.LG;q-bio.GN;stat.ML q-bio.GN https://arxiv.org/abs/2607.04527 False False 2607.09754 Cross-Subject Modeling for Widefield Calcium Imaging via Atlas-Aligned Spatiotemporal Tokenization 2026-07-05 cs.AI;cs.CV;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.09754 False False 2607.09754 Cross-Subject Modeling for Widefield Calcium Imaging via Atlas-Aligned Spatiotemporal Tokenization 2026-07-05 cs.AI;cs.CV;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.09754 False False 2607.04253 Diffusion bridge with randomized initial and terminal times and its application to fish migration 2026-07-05 math.PR;q-bio.PE q-bio.PE https://arxiv.org/abs/2607.04253 False False 2607.04253 Diffusion bridge with randomized initial and terminal times and its application to fish migration 2026-07-05 math.PR;q-bio.PE q-bio.PE https://arxiv.org/abs/2607.04253 False False 2607.04456 Mathematical Model of Evolution of Non-Degenerate Replicator Systems 2026-07-05 math.DS;math.OC;q-bio.PE q-bio.PE https://arxiv.org/abs/2607.04456 0.7881 0.7952 True 6 7.2 False 2607.04456 Mathematical Model of Evolution of Non-Degenerate Replicator Systems 2026-07-05 math.DS;math.OC;q-bio.PE q-bio.PE https://arxiv.org/abs/2607.04456 0.7881 0.7952 True 6 7.2 False 2607.04063 Learning Biophysical Models of Large-Scale Multineuronal Data to Enable Precise Neurostimulation 2026-07-05 q-bio.NC q-bio.NC https://arxiv.org/abs/2607.04063 False False 2607.03671 Diffusion learning reveals viable parameter manifolds and compensation geometry in biological dynamical systems 2026-07-04 cs.LG;physics.CD;q-bio.NC;q-bio.QM q-bio.NC https://arxiv.org/abs/2607.03671 False False 2607.03740 Triple-Phase Multimodal Knowledge Aggregation Framework for Microbial Keratitis Subtype Diagnosis on Slit-Lamp Photography 2026-07-04 cs.CV;eess.IV;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.03740 False False 2607.03787 Folding, Reasoning, and Scaling with Open-source Drug Discovery Engine 2026-07-04 cs.AI;cs.CE;q-bio.BM q-bio.BM https://arxiv.org/abs/2607.03787 False False 2607.03881 Smooth $\%$MinMax: A Differentiable Relaxation for Codon Harmonization 2026-07-04 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.03881 False False 2607.03890 Microsecond-precision sound localization emerges from slow equilibrium dynamics 2026-07-04 q-bio.NC q-bio.NC https://arxiv.org/abs/2607.03890 False False 2607.03979 What $R_0$ Deletes: Eigenvectors, Non-Normality, and the Social Content of the Basic Reproduction Number 2026-07-04 math.DS;q-bio.PE q-bio.PE https://arxiv.org/abs/2607.03979 False False 2607.03671 Diffusion learning reveals viable parameter manifolds and compensation geometry in biological dynamical systems 2026-07-04 cs.LG;physics.CD;q-bio.NC;q-bio.QM q-bio.NC https://arxiv.org/abs/2607.03671 False False 2607.03740 Triple-Phase Multimodal Knowledge Aggregation Framework for Microbial Keratitis Subtype Diagnosis on Slit-Lamp Photography 2026-07-04 cs.CV;eess.IV;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.03740 False False 2607.03787 Folding, Reasoning, and Scaling with Open-source Drug Discovery Engine 2026-07-04 cs.AI;cs.CE;q-bio.BM q-bio.BM https://arxiv.org/abs/2607.03787 False False 2607.03881 Smooth $\%$MinMax: A Differentiable Relaxation for Codon Harmonization 2026-07-04 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.03881 False False 2607.03890 Microsecond-precision sound localization emerges from slow equilibrium dynamics 2026-07-04 q-bio.NC q-bio.NC https://arxiv.org/abs/2607.03890 False False 2607.03979 What $R_0$ Deletes: Eigenvectors, Non-Normality, and the Social Content of the Basic Reproduction Number 2026-07-04 math.DS;q-bio.PE q-bio.PE https://arxiv.org/abs/2607.03979 False False 2607.06583 Trajectory Inference of Human Aging from Cross-Sectional DNA Methylation Data 2026-07-04 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.06583 False False 2607.03740 Triple-Phase Multimodal Knowledge Aggregation Framework for Microbial Keratitis Subtype Diagnosis on Slit-Lamp Photography 2026-07-04 cs.CV;eess.IV;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.03740 False False 2607.03740 Triple-Phase Multimodal Knowledge Aggregation Framework for Microbial Keratitis Subtype Diagnosis on Slit-Lamp Photography 2026-07-04 cs.CV;eess.IV;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.03740 False False 2607.06583 Trajectory Inference of Human Aging from Cross-Sectional DNA Methylation Data 2026-07-04 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.06583 False False 2607.07725 SHIFT: Survival Prediction from Incomplete and Heterogeneous Genomic Data 2026-07-04 cs.AI;cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2607.07725 False False 2607.07725 SHIFT: Survival Prediction from Incomplete and Heterogeneous Genomic Data 2026-07-04 cs.AI;cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2607.07725 False False 2607.03890 Microsecond-precision sound localization emerges from slow equilibrium dynamics 2026-07-04 q-bio.NC q-bio.NC https://arxiv.org/abs/2607.03890 False False 2607.03890 Microsecond-precision sound localization emerges from slow equilibrium dynamics 2026-07-04 q-bio.NC q-bio.NC https://arxiv.org/abs/2607.03890 False False 2607.03890 Microsecond-precision sound localization emerges from slow equilibrium dynamics 2026-07-04 q-bio.NC q-bio.NC https://arxiv.org/abs/2607.03890 False False 2607.03890 Microsecond-precision sound localization emerges from slow equilibrium dynamics 2026-07-04 q-bio.NC q-bio.NC https://arxiv.org/abs/2607.03890 False False 2607.02929 Modeling the Impact of Visual Brand Language on Attention, Object Recognition, and Memory Retrieval 2026-07-03 cs.AI;cs.CV;cs.HC;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.02929 False False 2607.03007 Back to Basics: Improving Molecular Understanding in LLMs via SMILES-Graph Translation 2026-07-03 cs.AI;cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2607.03007 False False 2607.03300 Variance of the $SIS$ Epidemic on Networks: A Diffusion Approximation 2026-07-03 math.PR;physics.soc-ph;physics.stat-mech;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.03300 False False 2607.03304 Adaptive Loss Balancing for Multi-Task Bioacoustic Classification of Bird Species and Call Types 2026-07-03 cs.LG;cs.SD;eess.AS;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.03304 False False 2607.03545 Cellular Adaptation to Signal Fluctuations as Learning 2026-07-03 physics.AO;physics.dis-nn;q-bio.MN q-bio.MN https://arxiv.org/abs/2607.03545 False False 2607.03556 Shunting Inhibition and Dendritic Branching Shape Local Credit Assignment 2026-07-03 q-bio.NC q-bio.NC https://arxiv.org/abs/2607.03556 False False 2607.02929 Modeling the Impact of Visual Brand Language on Attention, Object Recognition, and Memory Retrieval 2026-07-03 cs.AI;cs.CV;cs.HC;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.02929 False False 2607.03007 Back to Basics: Improving Molecular Understanding in LLMs via SMILES-Graph Translation 2026-07-03 cs.AI;cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2607.03007 False False 2607.03300 Variance of the $SIS$ Epidemic on Networks: A Diffusion Approximation 2026-07-03 math.PR;physics.soc-ph;physics.stat-mech;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.03300 False False 2607.03304 Adaptive Loss Balancing for Multi-Task Bioacoustic Classification of Bird Species and Call Types 2026-07-03 cs.LG;cs.SD;eess.AS;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.03304 False False 2607.03545 Cellular Adaptation to Signal Fluctuations as Learning 2026-07-03 physics.AO;physics.dis-nn;q-bio.MN q-bio.MN https://arxiv.org/abs/2607.03545 False False 2607.03556 Shunting Inhibition and Dendritic Branching Shape Local Credit Assignment 2026-07-03 q-bio.NC q-bio.NC https://arxiv.org/abs/2607.03556 False False 2607.05439 Design-CP: Context Parallelism for Design of Protein Nanoparticles 2026-07-03 cs.DC;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.05439 False False 2607.05439 Design-CP: Context Parallelism for Design of Protein Nanoparticles 2026-07-03 cs.DC;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.05439 False False 2607.06579 Recovering Candidate Circadian Regulators of Arrhythmic Pituitary Hormone Genes Using Reliability-Weighted Magnetic Laplacian with rwMagLap 2026-07-03 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.06579 False False 2607.06579 Recovering Candidate Circadian Regulators of Arrhythmic Pituitary Hormone Genes Using Reliability-Weighted Magnetic Laplacian with rwMagLap 2026-07-03 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.06579 False False 2607.09746 Longitudinal MRI template of the baboon brain from birth to adolescence 2026-07-03 eess.IV;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.09746 False False 2607.09747 Life as Plasmas: Autonomy and Interactivism in-materio 2026-07-03 cs.NE;q-bio.PE q-bio.PE https://arxiv.org/abs/2607.09747 False False 2607.09746 Longitudinal MRI template of the baboon brain from birth to adolescence 2026-07-03 eess.IV;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.09746 False False 2607.09747 Life as Plasmas: Autonomy and Interactivism in-materio 2026-07-03 cs.NE;q-bio.PE q-bio.PE https://arxiv.org/abs/2607.09747 False False 2607.09747 Life as Plasmas: Autonomy and Interactivism in-materio 2026-07-03 cs.NE;q-bio.PE q-bio.PE https://arxiv.org/abs/2607.09747 False False 2607.09747 Life as Plasmas: Autonomy and Interactivism in-materio 2026-07-03 cs.NE;q-bio.PE q-bio.PE https://arxiv.org/abs/2607.09747 False False 2607.03556 Shunting Inhibition and Dendritic Branching Shape Local Credit Assignment 2026-07-03 q-bio.NC q-bio.NC https://arxiv.org/abs/2607.03556 False False 2607.03556 Shunting Inhibition and Dendritic Branching Shape Local Credit Assignment 2026-07-03 q-bio.NC q-bio.NC https://arxiv.org/abs/2607.03556 False False 2607.01725 GlycoMAC: A Multiscale Metabolic-Glycosylation Framework for Predicting Glycosylation Across Conditions in Mammalian Cell Cultures 2026-07-02 q-bio.CB q-bio.CB https://arxiv.org/abs/2607.01725 False False 2607.01749 Identifiability Limits of Physics-Informed Inference for Spatial Stochastic Dynamics from Static Snapshots 2026-07-02 physics.bio-ph;q-bio.QM;stat.ML q-bio.QM https://arxiv.org/abs/2607.01749 False False 2607.01753 The Turning Point of 3D Plant Phenotyping: 3D Foundation Models Enable Minute-to-Second Cross-Crop Reconstruction and Beyond 2026-07-02 cs.CV;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.01753 False False 2607.01791 MERLIN-SUITE: Probabilistic modular GRN inference from multi-omics data integrating regulatory priors and transcription factor activity 2026-07-02 q-bio.MN q-bio.MN https://arxiv.org/abs/2607.01791 False False 2607.01982 MolSight: A Graph-Aware Vision-Language Model for Unified Chemical Image Understanding 2026-07-02 cs.AI;cs.CV;q-bio.BM q-bio.BM https://arxiv.org/abs/2607.01982 False False 2607.02103 Structured Gaussian Processes for Uncertainty-Aware Classification of High-Dimensional, Small-Sampled Omics Data 2026-07-02 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.02103 False False 2607.02217 Affinage: genome-scale mechanistic gene annotation from the published literature 2026-07-02 q-bio.GN q-bio.GN https://arxiv.org/abs/2607.02217 False False 2607.01725 GlycoMAC: A Multiscale Metabolic-Glycosylation Framework for Predicting Glycosylation Across Conditions in Mammalian Cell Cultures 2026-07-02 q-bio.CB q-bio.CB https://arxiv.org/abs/2607.01725 False False 2607.01749 Identifiability Limits of Physics-Informed Inference for Spatial Stochastic Dynamics from Static Snapshots 2026-07-02 physics.bio-ph;q-bio.QM;stat.ML q-bio.QM https://arxiv.org/abs/2607.01749 False False 2607.01753 The Turning Point of 3D Plant Phenotyping: 3D Foundation Models Enable Minute-to-Second Cross-Crop Reconstruction and Beyond 2026-07-02 cs.CV;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.01753 False False 2607.01791 MERLIN-SUITE: Probabilistic modular GRN inference from multi-omics data integrating regulatory priors and transcription factor activity 2026-07-02 q-bio.MN q-bio.MN https://arxiv.org/abs/2607.01791 False False 2607.01982 MolSight: A Graph-Aware Vision-Language Model for Unified Chemical Image Understanding 2026-07-02 cs.AI;cs.CV;q-bio.BM q-bio.BM https://arxiv.org/abs/2607.01982 False False 2607.02103 Structured Gaussian Processes for Uncertainty-Aware Classification of High-Dimensional, Small-Sampled Omics Data 2026-07-02 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.02103 False False 2607.02217 Affinage: genome-scale mechanistic gene annotation from the published literature 2026-07-02 q-bio.GN q-bio.GN https://arxiv.org/abs/2607.02217 False False 2607.02638 CLABTOOLKIT: An Open-Source Toolkit for Routine Processing, Manipulation, and Visualization of Neuroimaging Data 2026-07-02 cs.CV;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.02638 False False 2607.02768 Pretreatment MRI reveals a latent, molecular-subtype-independent structural phenotype that organizes treatment trajectories and recurrence risk 2026-07-02 cs.CV;cs.LG;eess.IV;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.02768 False False 2607.02638 CLABTOOLKIT: An Open-Source Toolkit for Routine Processing, Manipulation, and Visualization of Neuroimaging Data 2026-07-02 cs.CV;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.02638 False False 2607.02768 Pretreatment MRI reveals a latent, molecular-subtype-independent structural phenotype that organizes treatment trajectories and recurrence risk 2026-07-02 cs.CV;cs.LG;eess.IV;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.02768 False False 2607.06577 Esports and Physiological Tremor a StarCraft 2 Tournament Study 2026-07-02 cs.HC;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.06577 False False 2607.06577 Esports and Physiological Tremor a StarCraft 2 Tournament Study 2026-07-02 cs.HC;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.06577 False False 2607.24797 Reading Without a Reader: Large Language Models Collapse Reading and Writing into a Single Entangled Code 2026-07-02 cs.AI;cs.CL;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.24797 False False 2607.24797 Reading Without a Reader: Large Language Models Collapse Reading and Writing into a Single Entangled Code 2026-07-02 cs.AI;cs.CL;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.24797 False False 2607.24797 Reading Without a Reader: Large Language Models Collapse Reading and Writing into a Single Entangled Code 2026-07-02 cs.AI;cs.CL;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.24797 False False 2607.24797 Reading Without a Reader: Large Language Models Collapse Reading and Writing into a Single Entangled Code 2026-07-02 cs.AI;cs.CL;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.24797 False False 2607.01982 MolSight: A Graph-Aware Vision-Language Model for Unified Chemical Image Understanding 2026-07-02 cs.AI;cs.CV;q-bio.BM q-bio.BM https://arxiv.org/abs/2607.01982 False False 2607.01982 MolSight: A Graph-Aware Vision-Language Model for Unified Chemical Image Understanding 2026-07-02 cs.AI;cs.CV;q-bio.BM q-bio.BM https://arxiv.org/abs/2607.01982 False False 2607.00378 Radial Interaction Tomography: Recognizing Non-Transitive Evolutionary Games from One Range-Expansion Image 2026-07-01 cs.CV;q-bio.PE q-bio.PE https://arxiv.org/abs/2607.00378 False False 2607.00397 NeuroCogMap Reveals Cognitive Organization of Large Language Models 2026-07-01 cs.AI;cs.CL;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.00397 False False 2607.00531 Active-GRPO: Adaptive Imitation and Self-Improving Reasoning for Molecular Optimization 2026-07-01 cs.AI;cs.LG;q-bio.BM;stat.ML q-bio.BM https://arxiv.org/abs/2607.00531 False False 2607.00582 How Environment and Urbanization Shape Bird Diversity in Sri Lanka 2026-07-01 cs.LG;q-bio.PE q-bio.PE https://arxiv.org/abs/2607.00582 False False 2607.00584 Optimal control on a heterogeneous SI epidemic model 2026-07-01 q-bio.PE q-bio.PE https://arxiv.org/abs/2607.00584 False False 2607.00628 Effective population sizes for asymmetrically regulated birth-death processes 2026-07-01 q-bio.PE;q-bio.QM q-bio.PE https://arxiv.org/abs/2607.00628 False False 2607.00480 Exponential Sigmoid Equation for Modelling Cell Growth in a Confined Space, Log-Normal Distribution for Modelling Cell Area Distribution of Dense Colonies and Other Methods 2026-07-01 math.DS;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.00480 False False 2607.00851 DRIADA: A Python Toolkit for Cross-Scale Analysis of Single-Neuron Selectivity and Population Dynamics 2026-07-01 q-bio.NC;q-bio.QM q-bio.NC https://arxiv.org/abs/2607.00851 False False 2607.00879 Commutative Algebra Learning for Protein Flexibility Analysis 2026-07-01 q-bio.BM q-bio.BM https://arxiv.org/abs/2607.00879 False False 2607.00905 Immune history shapes recurrent epidemics of antigenically related variants 2026-07-01 physics.CD;q-bio.PE q-bio.PE https://arxiv.org/abs/2607.00905 0.7587 0.8167 True 6 6.75 False 2607.01014 Approximating Peak Prevalence in Multistage SIR Epidemics 2026-07-01 math.DS;q-bio.PE q-bio.PE https://arxiv.org/abs/2607.01014 False False 2607.00378 Radial Interaction Tomography: Recognizing Non-Transitive Evolutionary Games from One Range-Expansion Image 2026-07-01 cs.CV;q-bio.PE q-bio.PE https://arxiv.org/abs/2607.00378 False False 2607.00397 NeuroCogMap Reveals Cognitive Organization of Large Language Models 2026-07-01 cs.AI;cs.CL;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.00397 False False 2607.00531 Active-GRPO: Adaptive Imitation and Self-Improving Reasoning for Molecular Optimization 2026-07-01 cs.AI;cs.LG;q-bio.BM;stat.ML q-bio.BM https://arxiv.org/abs/2607.00531 False False 2607.00582 How Environment and Urbanization Shape Bird Diversity in Sri Lanka 2026-07-01 cs.LG;q-bio.PE q-bio.PE https://arxiv.org/abs/2607.00582 False False 2607.00584 Optimal control on a heterogeneous SI epidemic model 2026-07-01 q-bio.PE q-bio.PE https://arxiv.org/abs/2607.00584 False False 2607.00628 Effective population sizes for asymmetrically regulated birth-death processes 2026-07-01 q-bio.PE;q-bio.QM q-bio.PE https://arxiv.org/abs/2607.00628 False False 2607.00480 Exponential Sigmoid Equation for Modelling Cell Growth in a Confined Space, Log-Normal Distribution for Modelling Cell Area Distribution of Dense Colonies and Other Methods 2026-07-01 math.DS;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.00480 False False 2607.00851 DRIADA: A Python Toolkit for Cross-Scale Analysis of Single-Neuron Selectivity and Population Dynamics 2026-07-01 q-bio.NC;q-bio.QM q-bio.NC https://arxiv.org/abs/2607.00851 False False 2607.00879 Commutative Algebra Learning for Protein Flexibility Analysis 2026-07-01 q-bio.BM q-bio.BM https://arxiv.org/abs/2607.00879 False False 2607.00905 Immune history shapes recurrent epidemics of antigenically related variants 2026-07-01 physics.CD;q-bio.PE q-bio.PE https://arxiv.org/abs/2607.00905 0.7587 0.8167 True 6 6.75 False 2607.01014 Approximating Peak Prevalence in Multistage SIR Epidemics 2026-07-01 math.DS;q-bio.PE q-bio.PE https://arxiv.org/abs/2607.01014 False False 2607.01307 A Novel Machine Learning Approach for Central Nervous System Tumor Classification from DNA Methylation 2026-07-01 cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2607.01307 False False 2607.01362 Enerzyme: A Framework for Efficient Training of Reactive Neural Network Potentials for Enzyme Catalysis with Application to Methyltransferases 2026-07-01 cs.LG;physics.chem-ph;q-bio.BM q-bio.BM https://arxiv.org/abs/2607.01362 False False 2607.01400 A global predicted-fMRI drive signal from TRIBE does not predict YouTube replay heatmaps 2026-07-01 cs.LG;cs.SE;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.01400 False False 2607.01497 Noninvasive H3 K27M screening in pediatric diffuse midline glioma using radiomics on heterogeneous T2-weighted MRI 2026-07-01 q-bio.QM q-bio.QM https://arxiv.org/abs/2607.01497 False False 2607.01508 scMTNI: Leveraging cellular trajectory and context to infer dynamic GRNs from single-cell multi-omics data 2026-07-01 q-bio.MN q-bio.MN https://arxiv.org/abs/2607.01508 False False 2607.01307 A Novel Machine Learning Approach for Central Nervous System Tumor Classification from DNA Methylation 2026-07-01 cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2607.01307 False False 2607.01362 Enerzyme: A Framework for Efficient Training of Reactive Neural Network Potentials for Enzyme Catalysis with Application to Methyltransferases 2026-07-01 cs.LG;physics.chem-ph;q-bio.BM q-bio.BM https://arxiv.org/abs/2607.01362 False False 2607.01400 A global predicted-fMRI drive signal from TRIBE does not predict YouTube replay heatmaps 2026-07-01 cs.LG;cs.SE;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.01400 False False 2607.01497 Noninvasive H3 K27M screening in pediatric diffuse midline glioma using radiomics on heterogeneous T2-weighted MRI 2026-07-01 q-bio.QM q-bio.QM https://arxiv.org/abs/2607.01497 False False 2607.01508 scMTNI: Leveraging cellular trajectory and context to infer dynamic GRNs from single-cell multi-omics data 2026-07-01 q-bio.MN q-bio.MN https://arxiv.org/abs/2607.01508 False False 2607.01400 A global predicted-fMRI drive signal from TRIBE does not predict YouTube replay heatmaps 2026-07-01 cs.LG;cs.SE;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.01400 False False 2607.01400 A global predicted-fMRI drive signal from TRIBE does not predict YouTube replay heatmaps 2026-07-01 cs.LG;cs.SE;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.01400 False False 2607.00582 How Environment and Urbanization Shape Bird Diversity in Sri Lanka 2026-07-01 cs.LG;q-bio.PE q-bio.PE https://arxiv.org/abs/2607.00582 False False 2607.00582 How Environment and Urbanization Shape Bird Diversity in Sri Lanka 2026-07-01 cs.LG;q-bio.PE q-bio.PE https://arxiv.org/abs/2607.00582 False False 2606.31126 Can Tabular In-Context Learners Generalize to Biomolecular Property Prediction? 2026-06-30 cs.LG;q-bio.QM;stat.ML q-bio.QM https://arxiv.org/abs/2606.31126 False False 2606.31146 Persistence, Thresholds, and Trait Composition in a Regulated Mutation-Selection Model 2026-06-30 math.PR;q-bio.PE q-bio.PE https://arxiv.org/abs/2606.31146 False False 2606.31394 Resolving superposition in AI for interpretability and cross-modal alignment in patient-neuronal images 2026-06-30 cs.AI;cs.CV;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.31394 False False 2606.31733 A conceptual model for the evo-devo role of transposable elements and its implications for the ageing phenomenon 2026-06-30 q-bio.PE q-bio.PE https://arxiv.org/abs/2606.31733 False False 2606.31740 The Cooperation Ceiling: Extrinsic Population Dynamics and the Intrinsic Escape 2026-06-30 cs.GT;q-bio.PE q-bio.PE https://arxiv.org/abs/2606.31740 False False 2606.31768 Nonlinear Feedbacks Between Host Behavior and Vector Adaptation in a Multi-Host Vector-Borne Disease Model 2026-06-30 math.DS;q-bio.PE q-bio.PE https://arxiv.org/abs/2606.31768 False False 2606.31942 Invasion with size-dependent dispersion range 2026-06-30 physics.stat-mech;q-bio.PE q-bio.PE https://arxiv.org/abs/2606.31942 False False 2606.31944 Stationary covariance spectra of discrete-time non-normal random recurrent dynamics 2026-06-30 physics.dis-nn;q-bio.NC q-bio.NC https://arxiv.org/abs/2606.31944 False False 2606.31126 Can Tabular In-Context Learners Generalize to Biomolecular Property Prediction? 2026-06-30 cs.LG;q-bio.QM;stat.ML q-bio.QM https://arxiv.org/abs/2606.31126 False False 2606.31146 Persistence, Thresholds, and Trait Composition in a Regulated Mutation-Selection Model 2026-06-30 math.PR;q-bio.PE q-bio.PE https://arxiv.org/abs/2606.31146 False False 2606.31394 Resolving superposition in AI for interpretability and cross-modal alignment in patient-neuronal images 2026-06-30 cs.AI;cs.CV;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.31394 False False 2606.31733 A conceptual model for the evo-devo role of transposable elements and its implications for the ageing phenomenon 2026-06-30 q-bio.PE q-bio.PE https://arxiv.org/abs/2606.31733 False False 2606.31740 The Cooperation Ceiling: Extrinsic Population Dynamics and the Intrinsic Escape 2026-06-30 cs.GT;q-bio.PE q-bio.PE https://arxiv.org/abs/2606.31740 False False 2606.31768 Nonlinear Feedbacks Between Host Behavior and Vector Adaptation in a Multi-Host Vector-Borne Disease Model 2026-06-30 math.DS;q-bio.PE q-bio.PE https://arxiv.org/abs/2606.31768 False False 2606.31942 Invasion with size-dependent dispersion range 2026-06-30 physics.stat-mech;q-bio.PE q-bio.PE https://arxiv.org/abs/2606.31942 False False 2606.31944 Stationary covariance spectra of discrete-time non-normal random recurrent dynamics 2026-06-30 physics.dis-nn;q-bio.NC q-bio.NC https://arxiv.org/abs/2606.31944 False False 2607.00180 SF-Cluster: Frustration-Guided MSA Subsampling for Alternative Protein Conformation Recovery 2026-06-30 q-bio.BM q-bio.BM https://arxiv.org/abs/2607.00180 False False 2607.00262 Demographic senescence as multi-level selection in miniature 2026-06-30 math.AP;math.PR;physics.bio-ph;physics.stat-mech;q-bio.PE q-bio.PE https://arxiv.org/abs/2607.00262 False False 2607.00180 SF-Cluster: Frustration-Guided MSA Subsampling for Alternative Protein Conformation Recovery 2026-06-30 q-bio.BM q-bio.BM https://arxiv.org/abs/2607.00180 False False 2607.00262 Demographic senescence as multi-level selection in miniature 2026-06-30 math.AP;math.PR;physics.bio-ph;physics.stat-mech;q-bio.PE q-bio.PE https://arxiv.org/abs/2607.00262 False False 2606.31394 Resolving superposition in AI for interpretability and cross-modal alignment in patient-neuronal images 2026-06-30 cs.AI;cs.CV;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.31394 False False 2606.31394 Resolving superposition in AI for interpretability and cross-modal alignment in patient-neuronal images 2026-06-30 cs.AI;cs.CV;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.31394 False False 2606.31126 Can Tabular In-Context Learners Generalize to Biomolecular Property Prediction? 2026-06-30 cs.LG;q-bio.QM;stat.ML q-bio.QM https://arxiv.org/abs/2606.31126 False False 2606.31126 Can Tabular In-Context Learners Generalize to Biomolecular Property Prediction? 2026-06-30 cs.LG;q-bio.QM;stat.ML q-bio.QM https://arxiv.org/abs/2606.31126 False False 2607.09728 Quantum Thermodynamics of Electron Transport along Chains of Redox Centers 2026-06-30 physics.chem-ph;physics.mes-hall;physics.quant-ph;q-bio.MN q-bio.MN https://arxiv.org/abs/2607.09728 False False 2607.09728 Quantum Thermodynamics of Electron Transport along Chains of Redox Centers 2026-06-30 physics.chem-ph;physics.mes-hall;physics.quant-ph;q-bio.MN q-bio.MN https://arxiv.org/abs/2607.09728 False False 2607.19376 Refnd: Preventing Data Leakage in Relational Datasets 2026-06-30 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.19376 False False 2607.19376 Refnd: Preventing Data Leakage in Relational Datasets 2026-06-30 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.19376 False False 2607.24796 Selective Impairment of Motor Recovery from Typing Errors in Parkinson's Disease: A Survival Analysis 2026-06-30 cs.AI;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.24796 False False 2607.24796 Selective Impairment of Motor Recovery from Typing Errors in Parkinson's Disease: A Survival Analysis 2026-06-30 cs.AI;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.24796 False False 2606.29698 Clear Mind: Meditation and the Brain's Signal-to-Noise Ratio 2026-06-29 q-bio.NC q-bio.NC https://arxiv.org/abs/2606.29698 False False 2606.29876 Clinical Reasoning Graphs: Structured Evaluation of LLM Diagnostic Reasoning Reveals Competence Without Consistency 2026-06-29 cs.AI;cs.CL;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.29876 False False 2606.29949 Data-Efficient Multimodal Alignment for Histopathology-based Molecular Prediction 2026-06-29 cs.AI;eess.IV;q-bio.GN q-bio.GN https://arxiv.org/abs/2606.29949 False False 2606.30140 DNA Language Models: An Assessment of Pre-Training for Fine-Tuning Tasks 2026-06-29 cs.CL;q-bio.GN q-bio.GN https://arxiv.org/abs/2606.30140 False False 2606.30267 Pathway variability, coat stiffening and mechanical adaptation during clathrin-mediated endocytosis 2026-06-29 physics.bio-ph;physics.soft;q-bio.SC q-bio.SC https://arxiv.org/abs/2606.30267 False False 2606.30325 Thermodynamic Limits of Stochastic Chemical Reaction Networks with Phosphorylation 2026-06-29 math.PR;q-bio.MN q-bio.MN https://arxiv.org/abs/2606.30325 False False 2606.30329 Cohort-amortized personalization: navigating the privacy-utility frontier for virtual brain twins 2026-06-29 q-bio.NC q-bio.NC https://arxiv.org/abs/2606.30329 False False 2606.30366 Mean-field theory of rich oscillatory dynamics in low-rank recurrent networks with activity-dependent adaptation 2026-06-29 q-bio.NC q-bio.NC https://arxiv.org/abs/2606.30366 False False 2606.29698 Clear Mind: Meditation and the Brain's Signal-to-Noise Ratio 2026-06-29 q-bio.NC q-bio.NC https://arxiv.org/abs/2606.29698 False False 2606.29876 Clinical Reasoning Graphs: Structured Evaluation of LLM Diagnostic Reasoning Reveals Competence Without Consistency 2026-06-29 cs.AI;cs.CL;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.29876 False False 2606.29949 Data-Efficient Multimodal Alignment for Histopathology-based Molecular Prediction 2026-06-29 cs.AI;eess.IV;q-bio.GN q-bio.GN https://arxiv.org/abs/2606.29949 False False 2606.30140 DNA Language Models: An Assessment of Pre-Training for Fine-Tuning Tasks 2026-06-29 cs.CL;q-bio.GN q-bio.GN https://arxiv.org/abs/2606.30140 False False 2606.30267 Pathway variability, coat stiffening and mechanical adaptation during clathrin-mediated endocytosis 2026-06-29 physics.bio-ph;physics.soft;q-bio.SC q-bio.SC https://arxiv.org/abs/2606.30267 False False 2606.30325 Thermodynamic Limits of Stochastic Chemical Reaction Networks with Phosphorylation 2026-06-29 math.PR;q-bio.MN q-bio.MN https://arxiv.org/abs/2606.30325 False False 2606.30329 Cohort-amortized personalization: navigating the privacy-utility frontier for virtual brain twins 2026-06-29 q-bio.NC q-bio.NC https://arxiv.org/abs/2606.30329 False False 2606.30366 Mean-field theory of rich oscillatory dynamics in low-rank recurrent networks with activity-dependent adaptation 2026-06-29 q-bio.NC q-bio.NC https://arxiv.org/abs/2606.30366 False False 2606.30695 Modeling Cell-Cycle-Aware Single-Cell Drug Perturbation Responses 2026-06-29 cs.AI;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.30695 False False 2606.30842 A Transferable Learned Temporal Prior for Transmission Reconstruction and Decision-Relevant Uncertainty in Real Outbreak Labels 2026-06-29 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.30842 False False 2606.30902 Structure-Regularized Interpretable TCR-Epitope Prediction 2026-06-29 cs.CE;cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2606.30902 False False 2606.30695 Modeling Cell-Cycle-Aware Single-Cell Drug Perturbation Responses 2026-06-29 cs.AI;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.30695 False False 2606.30842 A Transferable Learned Temporal Prior for Transmission Reconstruction and Decision-Relevant Uncertainty in Real Outbreak Labels 2026-06-29 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.30842 False False 2606.30902 Structure-Regularized Interpretable TCR-Epitope Prediction 2026-06-29 cs.CE;cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2606.30902 False False 2606.30329 Cohort-amortized personalization: navigating the privacy-utility frontier for virtual brain twins 2026-06-29 q-bio.NC q-bio.NC https://arxiv.org/abs/2606.30329 False False 2606.30695 Modeling Cell-Cycle-Aware Single-Cell Drug Perturbation Responses 2026-06-29 cs.AI;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.30695 False False 2607.02564 From Raw Segmentations to Simulation-Ready Cardiac Meshes: An Automated Framework for Anatomical Reconstruction and Virtual Cohort Generation 2026-06-29 cs.AI;cs.CV;q-bio.TO q-bio.TO https://arxiv.org/abs/2607.02564 False False 2606.30329 Cohort-amortized personalization: navigating the privacy-utility frontier for virtual brain twins 2026-06-29 q-bio.NC q-bio.NC https://arxiv.org/abs/2606.30329 False False 2606.30695 Modeling Cell-Cycle-Aware Single-Cell Drug Perturbation Responses 2026-06-29 cs.AI;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.30695 False False 2607.02564 From Raw Segmentations to Simulation-Ready Cardiac Meshes: An Automated Framework for Anatomical Reconstruction and Virtual Cohort Generation 2026-06-29 cs.AI;cs.CV;q-bio.TO q-bio.TO https://arxiv.org/abs/2607.02564 False False 2607.08790 DentiAsk: A VQA Benchmark for Multimodal Reasoning in Panoramic Dental Radiographs 2026-06-29 q-bio.QM q-bio.QM https://arxiv.org/abs/2607.08790 False False 2607.08790 DentiAsk: A VQA Benchmark for Multimodal Reasoning in Panoramic Dental Radiographs 2026-06-29 q-bio.QM q-bio.QM https://arxiv.org/abs/2607.08790 False False 2607.16263 Preference-based Antibody Expression Ranking: Scaling with Large-scale Weak Supervision 2026-06-29 cs.CE;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.16263 False False 2607.16263 Preference-based Antibody Expression Ranking: Scaling with Large-scale Weak Supervision 2026-06-29 cs.CE;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.16263 False False 2606.29161 GLACIER: Rethinking Mass Spectrum Prediction as an Object Detection Problem 2026-06-28 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.29161 False False 2606.29191 Global stability analysis of a mathematical model from Alzheimer's disease 2026-06-28 math.DS;q-bio.PE q-bio.PE https://arxiv.org/abs/2606.29191 False False 2606.29529 Modeling Protein Evolution with Generative Models: from Extant Sequence Data to Evolutionary Dynamics 2026-06-28 q-bio.PE q-bio.PE https://arxiv.org/abs/2606.29529 False False 2606.29599 Manganese-Functionalized GelMA Hydrogels for MRI-Guided Immunotheranostics in Precision Oncology 2026-06-28 q-bio.BM q-bio.BM https://arxiv.org/abs/2606.29599 False False 2606.29655 Geometric Stability of Neural Population Codes: Regional Variation, Behavioral Relevance, and Circuit Dependence 2026-06-28 cs.NE;q-bio.NC;q-bio.QM q-bio.NC https://arxiv.org/abs/2606.29655 False False 2606.29161 GLACIER: Rethinking Mass Spectrum Prediction as an Object Detection Problem 2026-06-28 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.29161 False False 2606.29191 Global stability analysis of a mathematical model from Alzheimer's disease 2026-06-28 math.DS;q-bio.PE q-bio.PE https://arxiv.org/abs/2606.29191 False False 2606.29529 Modeling Protein Evolution with Generative Models: from Extant Sequence Data to Evolutionary Dynamics 2026-06-28 q-bio.PE q-bio.PE https://arxiv.org/abs/2606.29529 False False 2606.29599 Manganese-Functionalized GelMA Hydrogels for MRI-Guided Immunotheranostics in Precision Oncology 2026-06-28 q-bio.BM q-bio.BM https://arxiv.org/abs/2606.29599 False False 2606.29655 Geometric Stability of Neural Population Codes: Regional Variation, Behavioral Relevance, and Circuit Dependence 2026-06-28 cs.NE;q-bio.NC;q-bio.QM q-bio.NC https://arxiv.org/abs/2606.29655 False False 2606.30693 DiSTILL: A Hybrid Cloud-HPC Workflow System for Reproducible Spatial Transcriptomics Analysis 2026-06-28 q-bio.GN q-bio.GN https://arxiv.org/abs/2606.30693 False False 2606.30693 DiSTILL: A Hybrid Cloud-HPC Workflow System for Reproducible Spatial Transcriptomics Analysis 2026-06-28 q-bio.GN q-bio.GN https://arxiv.org/abs/2606.30693 False False 2606.28655 Exploring the Effects of Entanglement on Quantum Machine Learning of Pathogen Epitope-Receptor Binding 2026-06-27 cs.LG;physics.quant-ph;q-bio.BM q-bio.BM https://arxiv.org/abs/2606.28655 False False 2606.28659 Transformer-Based Active Learning for Data-Efficient Vaccine Epitope Selection in PRRS 2026-06-27 cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2606.28659 False False 2606.28895 Lumping of reaction networks: Generic and critical parameters 2026-06-27 math.DS;physics.chem-ph;q-bio.MN q-bio.MN https://arxiv.org/abs/2606.28895 False False 2606.28960 Expert Evaluation of Clinical AI Tools on Real Point-of-Care Clinical Queries 2026-06-27 cs.AI;q-bio.QM;stat.AP q-bio.QM https://arxiv.org/abs/2606.28960 False False 2606.28969 Democapsid 2026-06-27 q-bio.QM q-bio.QM https://arxiv.org/abs/2606.28969 False False 2606.29098 Connectivity Estimation using Stochastic Graph Heat Modelling 2026-06-27 cs.LG;cs.SI;eess.SP;q-bio.NC;stat.ML q-bio.NC https://arxiv.org/abs/2606.29098 False False 2606.28655 Exploring the Effects of Entanglement on Quantum Machine Learning of Pathogen Epitope-Receptor Binding 2026-06-27 cs.LG;physics.quant-ph;q-bio.BM q-bio.BM https://arxiv.org/abs/2606.28655 False False 2606.28659 Transformer-Based Active Learning for Data-Efficient Vaccine Epitope Selection in PRRS 2026-06-27 cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2606.28659 False False 2606.28895 Lumping of reaction networks: Generic and critical parameters 2026-06-27 math.DS;physics.chem-ph;q-bio.MN q-bio.MN https://arxiv.org/abs/2606.28895 False False 2606.28960 Expert Evaluation of Clinical AI Tools on Real Point-of-Care Clinical Queries 2026-06-27 cs.AI;q-bio.QM;stat.AP q-bio.QM https://arxiv.org/abs/2606.28960 False False 2606.28969 Democapsid 2026-06-27 q-bio.QM q-bio.QM https://arxiv.org/abs/2606.28969 False False 2606.29098 Connectivity Estimation using Stochastic Graph Heat Modelling 2026-06-27 cs.LG;cs.SI;eess.SP;q-bio.NC;stat.ML q-bio.NC https://arxiv.org/abs/2606.29098 False False 2606.30681 Pattern formation in a Reaction-Diffusion Model for Amyloid-$β$ and Tau Interactions in Alzheimer's Disease 2026-06-27 physics.PS;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.30681 False False 2606.30681 Pattern formation in a Reaction-Diffusion Model for Amyloid-$β$ and Tau Interactions in Alzheimer's Disease 2026-06-27 physics.PS;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.30681 False False 2606.28895 Lumping of reaction networks: Generic and critical parameters 2026-06-27 math.DS;physics.chem-ph;q-bio.MN q-bio.MN https://arxiv.org/abs/2606.28895 False False 2606.28895 Lumping of reaction networks: Generic and critical parameters 2026-06-27 math.DS;physics.chem-ph;q-bio.MN q-bio.MN https://arxiv.org/abs/2606.28895 False False 2606.27653 Characterisation of reactive Nash equilibria in repeated additive games 2026-06-26 cs.GT;econ.TH;q-bio.PE q-bio.PE https://arxiv.org/abs/2606.27653 False False 2606.27657 Reconstructing the Developmental Trajectory of Adipocytes in Human Adipose Tissue Using Single-Cell RNA Sequencing 2026-06-26 cs.AI;q-bio.GN q-bio.GN https://arxiv.org/abs/2606.27657 False False 2606.27667 Explainable AI for Biodiversity Monitoring and Ecological Image Analysis 2026-06-26 cs.AI;cs.CV;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.27667 False False 2606.27783 CANNs: A Toolkit for Research on Continuous Attractor Neural Networks 2026-06-26 cs.LG;cs.NE;q-bio.NC q-bio.NC https://arxiv.org/abs/2606.27783 False False 2606.27939 Two-Stage Fine-Tuning for Protein Sequence Generation with Targeted Amino-Acid Composition 2026-06-26 cs.AI;cs.LG;q-bio.BM;q-bio.GN q-bio.BM https://arxiv.org/abs/2606.27939 False False 2606.27942 Towards coevolution-aware ancestral sequence reconstruction 2026-06-26 physics.bio-ph;q-bio.BM;q-bio.PE q-bio.BM https://arxiv.org/abs/2606.27942 False False 2606.27946 Heterogeneous synaptic motifs bridge microscale structure and macroscale nonlinear dynamics 2026-06-26 cs.NE;physics.dis-nn;q-bio.NC q-bio.NC https://arxiv.org/abs/2606.27946 False False 2606.27983 Reconstructability of evolutionary intermediates in generative epistatic landscapes 2026-06-26 physics.bio-ph;q-bio.BM;q-bio.PE q-bio.BM https://arxiv.org/abs/2606.27983 False False 2606.28100 Discrete Event Population Updates: finding game theoretic emergent behaviour in queueing systems with simulation 2026-06-26 cs.GT;math.OC;math.PR;q-bio.PE q-bio.PE https://arxiv.org/abs/2606.28100 False False 2606.28261 Habitual lifestyle timing explains circadian timing, but daily lifestyle changes do not, in free-living humans across 2000 days 2026-06-26 q-bio.QM;stat.AP q-bio.QM https://arxiv.org/abs/2606.28261 False False 2606.27653 Characterisation of reactive Nash equilibria in repeated additive games 2026-06-26 cs.GT;econ.TH;q-bio.PE q-bio.PE https://arxiv.org/abs/2606.27653 False False 2606.27657 Reconstructing the Developmental Trajectory of Adipocytes in Human Adipose Tissue Using Single-Cell RNA Sequencing 2026-06-26 cs.AI;q-bio.GN q-bio.GN https://arxiv.org/abs/2606.27657 False False 2606.27667 Explainable AI for Biodiversity Monitoring and Ecological Image Analysis 2026-06-26 cs.AI;cs.CV;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.27667 False False 2606.27783 CANNs: A Toolkit for Research on Continuous Attractor Neural Networks 2026-06-26 cs.LG;cs.NE;q-bio.NC q-bio.NC https://arxiv.org/abs/2606.27783 False False 2606.27939 Two-Stage Fine-Tuning for Protein Sequence Generation with Targeted Amino-Acid Composition 2026-06-26 cs.AI;cs.LG;q-bio.BM;q-bio.GN q-bio.BM https://arxiv.org/abs/2606.27939 False False 2606.27942 Towards coevolution-aware ancestral sequence reconstruction 2026-06-26 physics.bio-ph;q-bio.BM;q-bio.PE q-bio.BM https://arxiv.org/abs/2606.27942 False False 2606.27946 Heterogeneous synaptic motifs bridge microscale structure and macroscale nonlinear dynamics 2026-06-26 cs.NE;physics.dis-nn;q-bio.NC q-bio.NC https://arxiv.org/abs/2606.27946 False False 2606.27983 Reconstructability of evolutionary intermediates in generative epistatic landscapes 2026-06-26 physics.bio-ph;q-bio.BM;q-bio.PE q-bio.BM https://arxiv.org/abs/2606.27983 False False 2606.28100 Discrete Event Population Updates: finding game theoretic emergent behaviour in queueing systems with simulation 2026-06-26 cs.GT;math.OC;math.PR;q-bio.PE q-bio.PE https://arxiv.org/abs/2606.28100 False False 2606.28261 Habitual lifestyle timing explains circadian timing, but daily lifestyle changes do not, in free-living humans across 2000 days 2026-06-26 q-bio.QM;stat.AP q-bio.QM https://arxiv.org/abs/2606.28261 False False 2606.28449 Establishing the Minimal Clinically Important Difference (MCID) for Smartphone-Derived Gait Measures in Multiple Sclerosis 2026-06-26 cs.CV;physics.med-ph;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.28449 False False 2606.28459 scKDGM: KAN-guided Dynamic Graph Masked Learning for Single-Cell RNA-seq Clustering 2026-06-26 cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2606.28459 False False 2606.28465 SVC-Probe: A Framework for Evaluating Perturbation Generalization in Spatial Foundation-Model Embeddings 2026-06-26 cs.AI;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.28465 False False 2606.28470 Modelling Emotional Memory in Children with Tensor Networks 2026-06-26 cs.LG;physics.quant-ph;q-bio.NC q-bio.NC https://arxiv.org/abs/2606.28470 False False 2606.28449 Establishing the Minimal Clinically Important Difference (MCID) for Smartphone-Derived Gait Measures in Multiple Sclerosis 2026-06-26 cs.CV;physics.med-ph;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.28449 False False 2606.28459 scKDGM: KAN-guided Dynamic Graph Masked Learning for Single-Cell RNA-seq Clustering 2026-06-26 cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2606.28459 False False 2606.28465 SVC-Probe: A Framework for Evaluating Perturbation Generalization in Spatial Foundation-Model Embeddings 2026-06-26 cs.AI;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.28465 False False 2606.28470 Modelling Emotional Memory in Children with Tensor Networks 2026-06-26 cs.LG;physics.quant-ph;q-bio.NC q-bio.NC https://arxiv.org/abs/2606.28470 False False 2606.30675 Listening Between the Lines: Joint Learning of ASR Embeddings and LLM-Augmented Linguistics for Dementia Detection 2026-06-26 cs.AI;cs.LG;eess.AS;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.30675 False False 2606.30675 Listening Between the Lines: Joint Learning of ASR Embeddings and LLM-Augmented Linguistics for Dementia Detection 2026-06-26 cs.AI;cs.LG;eess.AS;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.30675 False False 2607.02552 Enabling Fast, Efficient, and Low-Cost Genomic and Metagenomic Analyses via Storage-Centric System Designs 2026-06-26 cs.AR;cs.DC;q-bio.GN;q-bio.QM q-bio.GN https://arxiv.org/abs/2607.02552 False False 2607.02553 Interpretable machine learning predicts Parkinson's disease severity using motion-corrected QSM MRI and multiband multiecho fMRI features 2026-06-26 cs.CV;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.02553 False False 2607.02552 Enabling Fast, Efficient, and Low-Cost Genomic and Metagenomic Analyses via Storage-Centric System Designs 2026-06-26 cs.AR;cs.DC;q-bio.GN;q-bio.QM q-bio.GN https://arxiv.org/abs/2607.02552 False False 2607.02553 Interpretable machine learning predicts Parkinson's disease severity using motion-corrected QSM MRI and multiband multiecho fMRI features 2026-06-26 cs.CV;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.02553 False False 2607.18277 Risk-mediated transmission dynamics govern epidemic trajectories beyond physical mobility 2026-06-26 physics.soc-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2607.18277 False False 2607.18277 Risk-mediated transmission dynamics govern epidemic trajectories beyond physical mobility 2026-06-26 physics.soc-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2607.18277 False False 2606.26468 GRAINS: Storage-Aware Algorithm-Architecture Co-Design Enabling High-Performance and Low-Cost Graph-Based Genome Analysis 2026-06-25 cs.AR;cs.DC;q-bio.GN;q-bio.QM q-bio.GN https://arxiv.org/abs/2606.26468 False False 2606.26563 scBench-Long: Verifiable Benchmarking of Long-Horizon Single-Cell Biology 2026-06-25 cs.AI;q-bio.GN q-bio.GN https://arxiv.org/abs/2606.26563 False False 2606.26577 Shape-Constrained Bayesian Active Learning of Self-Limiting Saturation Curves 2026-06-25 physics.chem-ph;physics.data-an;physics.mtrl-sci;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.26577 False False 2606.26624 Budget-Constrained Compound Library Prioritization with Risk Awareness and Uncertainty Quantification 2026-06-25 q-bio.QM q-bio.QM https://arxiv.org/abs/2606.26624 False False 2606.26659 pVACtools v6: A comprehensive suite for neoantigen prediction, visualization, and therapy design 2026-06-25 q-bio.QM q-bio.QM https://arxiv.org/abs/2606.26659 False False 2606.26673 Semialgebraic Conditions for Identifying Triangles in Phylogenetic Networks 2026-06-25 q-bio.PE q-bio.PE https://arxiv.org/abs/2606.26673 False False 2606.26674 On-farm management strategies for reducing H5N1 transmission in dairy cattle 2026-06-25 q-bio.PE q-bio.PE https://arxiv.org/abs/2606.26674 False False 2606.26723 State-Specific Respiratory Signatures for Affective and Stress Recognition: Interpretable Respiratory Markers, Autocorrelation Lags, and Compact CNN Models 2026-06-25 cs.LG;eess.SP;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.26723 False False 2606.26733 Surviving by Serving: Functional Relevance Drives Self-Organization in Complex Adaptive Systems 2026-06-25 cs.NE;physics.AO;q-bio.NC q-bio.NC https://arxiv.org/abs/2606.26733 False False 2606.26919 The parental parsimony problem on binary, tree-child phylogenetic networks 2026-06-25 math.OC;q-bio.PE q-bio.PE https://arxiv.org/abs/2606.26919 False False 2606.26974 Hyperiax and Phylogenetic Inference from Shape Data 2026-06-25 q-bio.PE q-bio.PE https://arxiv.org/abs/2606.26974 False False 2606.27168 Deep learning model emulators for marine biogeochemistry forecasting from days to decades 2026-06-25 physics.CD;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.27168 False False 2606.26468 GRAINS: Storage-Aware Algorithm-Architecture Co-Design Enabling High-Performance and Low-Cost Graph-Based Genome Analysis 2026-06-25 cs.AR;cs.DC;q-bio.GN;q-bio.QM q-bio.GN https://arxiv.org/abs/2606.26468 False False 2606.26563 scBench-Long: Verifiable Benchmarking of Long-Horizon Single-Cell Biology 2026-06-25 cs.AI;q-bio.GN q-bio.GN https://arxiv.org/abs/2606.26563 False False 2606.26577 Shape-Constrained Bayesian Active Learning of Self-Limiting Saturation Curves 2026-06-25 physics.chem-ph;physics.data-an;physics.mtrl-sci;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.26577 False False 2606.26624 Budget-Constrained Compound Library Prioritization with Risk Awareness and Uncertainty Quantification 2026-06-25 q-bio.QM q-bio.QM https://arxiv.org/abs/2606.26624 False False 2606.26659 pVACtools v6: A comprehensive suite for neoantigen prediction, visualization, and therapy design 2026-06-25 q-bio.QM q-bio.QM https://arxiv.org/abs/2606.26659 False False 2606.26673 Semialgebraic Conditions for Identifying Triangles in Phylogenetic Networks 2026-06-25 q-bio.PE q-bio.PE https://arxiv.org/abs/2606.26673 False False 2606.26674 On-farm management strategies for reducing H5N1 transmission in dairy cattle 2026-06-25 q-bio.PE q-bio.PE https://arxiv.org/abs/2606.26674 False False 2606.26723 State-Specific Respiratory Signatures for Affective and Stress Recognition: Interpretable Respiratory Markers, Autocorrelation Lags, and Compact CNN Models 2026-06-25 cs.LG;eess.SP;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.26723 False False 2606.26733 Surviving by Serving: Functional Relevance Drives Self-Organization in Complex Adaptive Systems 2026-06-25 cs.NE;physics.AO;q-bio.NC q-bio.NC https://arxiv.org/abs/2606.26733 False False 2606.26919 The parental parsimony problem on binary, tree-child phylogenetic networks 2026-06-25 math.OC;q-bio.PE q-bio.PE https://arxiv.org/abs/2606.26919 False False 2606.26974 Hyperiax and Phylogenetic Inference from Shape Data 2026-06-25 q-bio.PE q-bio.PE https://arxiv.org/abs/2606.26974 False False 2606.27168 Deep learning model emulators for marine biogeochemistry forecasting from days to decades 2026-06-25 physics.CD;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.27168 False False 2606.27413 GRAFT: Biological Graph and Hypergraph Benchmarks for Linked Gene Expression and Phenotypic Trait Prediction in Arabidopsis thaliana 2026-06-25 cs.AI;q-bio.GN q-bio.GN https://arxiv.org/abs/2606.27413 False False 2606.27529 Modelling chronic stress as an excitatory-inhibitory perturbation in recurrent working-memory networks 2026-06-25 q-bio.NC q-bio.NC https://arxiv.org/abs/2606.27529 False False 2606.27579 Distribution-based deep multiple instance learning for tumor proportion scoring in NSCLC 2026-06-25 cs.AI;cs.CV;cs.LG;q-bio.TO q-bio.TO https://arxiv.org/abs/2606.27579 False False 2606.27607 BEAGLE 4.1: A high-performance library for computation on phylogenetic trees across diverse parallel architectures 2026-06-25 q-bio.PE q-bio.PE https://arxiv.org/abs/2606.27607 False False 2606.27413 GRAFT: Biological Graph and Hypergraph Benchmarks for Linked Gene Expression and Phenotypic Trait Prediction in Arabidopsis thaliana 2026-06-25 cs.AI;q-bio.GN q-bio.GN https://arxiv.org/abs/2606.27413 False False 2606.27529 Modelling chronic stress as an excitatory-inhibitory perturbation in recurrent working-memory networks 2026-06-25 q-bio.NC q-bio.NC https://arxiv.org/abs/2606.27529 False False 2606.27579 Distribution-based deep multiple instance learning for tumor proportion scoring in NSCLC 2026-06-25 cs.AI;cs.CV;cs.LG;q-bio.TO q-bio.TO https://arxiv.org/abs/2606.27579 False False 2606.27607 BEAGLE 4.1: A high-performance library for computation on phylogenetic trees across diverse parallel architectures 2026-06-25 q-bio.PE q-bio.PE https://arxiv.org/abs/2606.27607 False False 2606.28418 Metabolic scaling, von Bertalanffy growth and an exponent equation 2026-06-25 physics.bio-ph;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.28418 False False 2606.28418 Metabolic scaling, von Bertalanffy growth and an exponent equation 2026-06-25 physics.bio-ph;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.28418 False False 2606.25584 ML-MAWS: Alignment-Free Maximum Likelihood Phylogeny Estimation Using Minimal Absent Words 2026-06-24 q-bio.PE q-bio.PE https://arxiv.org/abs/2606.25584 False False 2606.25826 Weight geometry governs functional memory in complex systems 2026-06-24 cs.SI;math.MP;physics.dis-nn;physics.math-ph;q-bio.NC q-bio.NC https://arxiv.org/abs/2606.25826 False False 2606.25865 Molexar: A Unified Multimodal Molecular Foundation Model for Drug Design 2026-06-24 q-bio.BM q-bio.BM https://arxiv.org/abs/2606.25865 False False 2606.25874 Topology-Dependent Emergence of Polychronous Neuronal Groups: A Recurrence-Plot Characterization 2026-06-24 physics.AO;q-bio.NC q-bio.NC https://arxiv.org/abs/2606.25874 False False 2606.26061 Deviance-style normalization for jointly overdispersed counts 2026-06-24 math.ST;q-bio.QM;stat.ME;stat.ML;stat.TH q-bio.QM https://arxiv.org/abs/2606.26061 False False 2606.25584 ML-MAWS: Alignment-Free Maximum Likelihood Phylogeny Estimation Using Minimal Absent Words 2026-06-24 q-bio.PE q-bio.PE https://arxiv.org/abs/2606.25584 False False 2606.25826 Weight geometry governs functional memory in complex systems 2026-06-24 cs.SI;math.MP;physics.dis-nn;physics.math-ph;q-bio.NC q-bio.NC https://arxiv.org/abs/2606.25826 False False 2606.25865 Molexar: A Unified Multimodal Molecular Foundation Model for Drug Design 2026-06-24 q-bio.BM q-bio.BM https://arxiv.org/abs/2606.25865 False False 2606.25874 Topology-Dependent Emergence of Polychronous Neuronal Groups: A Recurrence-Plot Characterization 2026-06-24 physics.AO;q-bio.NC q-bio.NC https://arxiv.org/abs/2606.25874 False False 2606.26061 Deviance-style normalization for jointly overdispersed counts 2026-06-24 math.ST;q-bio.QM;stat.ME;stat.ML;stat.TH q-bio.QM https://arxiv.org/abs/2606.26061 False False 2606.26168 Implementation of reinforcement learning in chemical reaction networks: application to phototaxis as curiosity-driven exploration 2026-06-24 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.26168 False False 2606.26170 Sensitivity of evolutionary entropy in Lefkovitch matrices 2026-06-24 q-bio.PE q-bio.PE https://arxiv.org/abs/2606.26170 False False 2606.26179 KG-TRACE: A Neuro-Symbolic Framework for Mechanistic Grounding in Antimicrobial Resistance Prediction 2026-06-24 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.26179 False False 2606.26279 Beyond Single-Source Cognitive Taskonomy:Multi-Source Task Relations through fMRI Transfer Learning 2026-06-24 cs.CV;q-bio.NC q-bio.NC https://arxiv.org/abs/2606.26279 False False 2606.26340 An Investigation of Additional Food Models with Generalised Functional Response 2026-06-24 q-bio.PE q-bio.PE https://arxiv.org/abs/2606.26340 False False 2606.26402 Smoothly Time-Varying Continuous Time Markov Chains in Phylogenetics 2026-06-24 q-bio.PE;stat.ME q-bio.PE https://arxiv.org/abs/2606.26402 False False 2606.26433 Frustrated shapes of solid domains in fluid membrane vesicles: From rolls and folds to crumples and wrinkles 2026-06-24 physics.soft;q-bio.BM q-bio.BM https://arxiv.org/abs/2606.26433 False False 2606.26448 Closing the Loop to Discover Psychological Theories with an Automated Cognitive Scientist 2026-06-24 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2606.26448 False False 2606.26168 Implementation of reinforcement learning in chemical reaction networks: application to phototaxis as curiosity-driven exploration 2026-06-24 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.26168 False False 2606.26170 Sensitivity of evolutionary entropy in Lefkovitch matrices 2026-06-24 q-bio.PE q-bio.PE https://arxiv.org/abs/2606.26170 False False 2606.26179 KG-TRACE: A Neuro-Symbolic Framework for Mechanistic Grounding in Antimicrobial Resistance Prediction 2026-06-24 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.26179 False False 2606.26279 Beyond Single-Source Cognitive Taskonomy:Multi-Source Task Relations through fMRI Transfer Learning 2026-06-24 cs.CV;q-bio.NC q-bio.NC https://arxiv.org/abs/2606.26279 False False 2606.26340 An Investigation of Additional Food Models with Generalised Functional Response 2026-06-24 q-bio.PE q-bio.PE https://arxiv.org/abs/2606.26340 False False 2606.26402 Smoothly Time-Varying Continuous Time Markov Chains in Phylogenetics 2026-06-24 q-bio.PE;stat.ME q-bio.PE https://arxiv.org/abs/2606.26402 False False 2606.26433 Frustrated shapes of solid domains in fluid membrane vesicles: From rolls and folds to crumples and wrinkles 2026-06-24 physics.soft;q-bio.BM q-bio.BM https://arxiv.org/abs/2606.26433 False False 2606.26448 Closing the Loop to Discover Psychological Theories with an Automated Cognitive Scientist 2026-06-24 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2606.26448 False False 2606.28399 Meta-learning as a principle for human-like visual representations 2026-06-24 cs.CV;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2606.28399 False False 2606.28399 Meta-learning as a principle for human-like visual representations 2026-06-24 cs.CV;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2606.28399 False False 2606.25584 ML-MAWS: Alignment-Free Maximum Likelihood Phylogeny Estimation Using Minimal Absent Words 2026-06-24 q-bio.PE q-bio.PE https://arxiv.org/abs/2606.25584 False False 2606.25584 ML-MAWS: Alignment-Free Maximum Likelihood Phylogeny Estimation Using Minimal Absent Words 2026-06-24 q-bio.PE q-bio.PE https://arxiv.org/abs/2606.25584 False False 2606.25826 Weight geometry governs functional memory in complex systems 2026-06-24 cs.SI;math.MP;physics.dis-nn;physics.math-ph;q-bio.NC q-bio.NC https://arxiv.org/abs/2606.25826 False False 2606.25826 Weight geometry governs functional memory in complex systems 2026-06-24 cs.SI;math.MP;physics.dis-nn;physics.math-ph;q-bio.NC q-bio.NC https://arxiv.org/abs/2606.25826 False False 2606.24037 The Morality Game: An online multiplayer platform to standardize, expedite, and expand research on cooperation 2026-06-23 q-bio.NC q-bio.NC https://arxiv.org/abs/2606.24037 False False 2606.24246 Hierarchical models for large chemical reaction networks 2026-06-23 physics.chem-ph;q-bio.MN q-bio.MN https://arxiv.org/abs/2606.24246 False False 2606.24325 Exact Enumeration of Phylogenetic Networks: The Tree-Child, Reticulation-Visible and Orchard Hierarchy 2026-06-23 math.CO;q-bio.PE q-bio.PE https://arxiv.org/abs/2606.24325 False False 2606.24351 Graph-based analysis of inflammatory profiles in New Onset Refractory Status Epilepticus (NORSE) 2026-06-23 physics.data-an;q-bio.NC q-bio.NC https://arxiv.org/abs/2606.24351 False False 2606.24372 Machine learning-based modeling to predict inhibitors for targets of Alzheimer's Disease 2026-06-23 q-bio.QM q-bio.QM https://arxiv.org/abs/2606.24372 False False 2606.24394 Average Rankings Mask Per-Subject Optimality: A Friedman-Nemenyi Benchmark of EEG Motor-Imagery BCI Decoders 2026-06-23 cs.AI;cs.HC;cs.RO;q-bio.NC q-bio.NC https://arxiv.org/abs/2606.24394 False False 2606.24406 EEG Interpretation Across Chant Listening: A Single-Subject Pilot Investigation Using Spectral and Functional Connectivity Analysis 2026-06-23 eess.SP;q-bio.NC q-bio.NC https://arxiv.org/abs/2606.24406 False False 2606.24411 The impact of population heterogeneity on the redundancy principle 2026-06-23 physics.stat-mech;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.24411 False False 2606.24415 Novel Triple-Based Problems for the Construction of Phylogenetic Networks via Least Common Ancestors 2026-06-23 cs.DM;q-bio.PE q-bio.PE https://arxiv.org/abs/2606.24415 False False 2606.24417 cuSBF: A Minimizer-Aware Bloom Filter for Genomic Sequence Data on Modern GPUs 2026-06-23 cs.DC;cs.DS;q-bio.GN q-bio.GN https://arxiv.org/abs/2606.24417 False False 2606.24487 CABS-flex standalone 3: an open command-line platform for protein flexibility simulation, peptide structure modeling, and protein-peptide docking 2026-06-23 q-bio.BM q-bio.BM https://arxiv.org/abs/2606.24487 False False 2606.24562 A parameterized family of balance indices for phylogenetic networks 2026-06-23 math.CO;math.PR;q-bio.PE q-bio.PE https://arxiv.org/abs/2606.24562 False False 2606.24660 Extended pseudo-spectral physics-informed neural networks for phase-field models 2026-06-23 cs.LG;cs.NA;math.NA;physics.bio-ph;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.24660 False False 2606.24668 A pilot study examining transcranial photobiomodulation therapy intervention in college students with insomnia 2026-06-23 q-bio.NC;stat.OT q-bio.NC https://arxiv.org/abs/2606.24668 False False 2606.24779 DeepBD: A Grounded Agentic Workflow for Variant Prioritization and Diagnosis of Genetic Birth Defects 2026-06-23 cs.AI;q-bio.GN q-bio.GN https://arxiv.org/abs/2606.24779 False False 2606.24873 Data-Based Dynamical Systems Reconstruction: An Adequacy/Reliability Test 2026-06-23 math.DS;math.MP;physics.math-ph;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.24873 False False 2606.24037 The Morality Game: An online multiplayer platform to standardize, expedite, and expand research on cooperation 2026-06-23 q-bio.NC q-bio.NC https://arxiv.org/abs/2606.24037 False False 2606.24246 Hierarchical models for large chemical reaction networks 2026-06-23 physics.chem-ph;q-bio.MN q-bio.MN https://arxiv.org/abs/2606.24246 False False 2606.24325 Exact Enumeration of Phylogenetic Networks: The Tree-Child, Reticulation-Visible and Orchard Hierarchy 2026-06-23 math.CO;q-bio.PE q-bio.PE https://arxiv.org/abs/2606.24325 False False 2606.24351 Graph-based analysis of inflammatory profiles in New Onset Refractory Status Epilepticus (NORSE) 2026-06-23 physics.data-an;q-bio.NC q-bio.NC https://arxiv.org/abs/2606.24351 False False 2606.24372 Machine learning-based modeling to predict inhibitors for targets of Alzheimer's Disease 2026-06-23 q-bio.QM q-bio.QM https://arxiv.org/abs/2606.24372 False False 2606.24394 Average Rankings Mask Per-Subject Optimality: A Friedman-Nemenyi Benchmark of EEG Motor-Imagery BCI Decoders 2026-06-23 cs.AI;cs.HC;cs.RO;q-bio.NC q-bio.NC https://arxiv.org/abs/2606.24394 False False 2606.24406 EEG Interpretation Across Chant Listening: A Single-Subject Pilot Investigation Using Spectral and Functional Connectivity Analysis 2026-06-23 eess.SP;q-bio.NC q-bio.NC https://arxiv.org/abs/2606.24406 False False 2606.24411 The impact of population heterogeneity on the redundancy principle 2026-06-23 physics.stat-mech;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.24411 False False 2606.24415 Novel Triple-Based Problems for the Construction of Phylogenetic Networks via Least Common Ancestors 2026-06-23 cs.DM;q-bio.PE q-bio.PE https://arxiv.org/abs/2606.24415 False False 2606.24417 cuSBF: A Minimizer-Aware Bloom Filter for Genomic Sequence Data on Modern GPUs 2026-06-23 cs.DC;cs.DS;q-bio.GN q-bio.GN https://arxiv.org/abs/2606.24417 False False 2606.24487 CABS-flex standalone 3: an open command-line platform for protein flexibility simulation, peptide structure modeling, and protein-peptide docking 2026-06-23 q-bio.BM q-bio.BM https://arxiv.org/abs/2606.24487 False False 2606.24562 A parameterized family of balance indices for phylogenetic networks 2026-06-23 math.CO;math.PR;q-bio.PE q-bio.PE https://arxiv.org/abs/2606.24562 False False 2606.24660 Extended pseudo-spectral physics-informed neural networks for phase-field models 2026-06-23 cs.LG;cs.NA;math.NA;physics.bio-ph;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.24660 False False 2606.24668 A pilot study examining transcranial photobiomodulation therapy intervention in college students with insomnia 2026-06-23 q-bio.NC;stat.OT q-bio.NC https://arxiv.org/abs/2606.24668 False False 2606.24779 DeepBD: A Grounded Agentic Workflow for Variant Prioritization and Diagnosis of Genetic Birth Defects 2026-06-23 cs.AI;q-bio.GN q-bio.GN https://arxiv.org/abs/2606.24779 False False 2606.24873 Data-Based Dynamical Systems Reconstruction: An Adequacy/Reliability Test 2026-06-23 math.DS;math.MP;physics.math-ph;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.24873 False False 2606.24995 Are Tabular Foundation Models Robust to Realistic Query Distribution Shifts in Microbiome Data? 2026-06-23 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.24995 False False 2606.24995 Are Tabular Foundation Models Robust to Realistic Query Distribution Shifts in Microbiome Data? 2026-06-23 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.24995 False False 2606.24325 Exact Enumeration of Phylogenetic Networks: The Tree-Child, Reticulation-Visible and Orchard Hierarchy 2026-06-23 math.CO;q-bio.PE q-bio.PE https://arxiv.org/abs/2606.24325 False False 2606.24325 Exact Enumeration of Phylogenetic Networks: The Tree-Child, Reticulation-Visible and Orchard Hierarchy 2026-06-23 math.CO;q-bio.PE q-bio.PE https://arxiv.org/abs/2606.24325 False False 2606.22823 Retrieval-Augmented Multimodal Learning for Enzyme-Substrate Interaction Prediction Under Low-Homology Shift 2026-06-22 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.22823 False False 2606.22949 When do correlations reflect biological similarity in ecological dynamics? 2026-06-22 q-bio.PE q-bio.PE https://arxiv.org/abs/2606.22949 False False 2606.23066 Estimating common synaptic inputs to spinal motor neurons from motor unit spike trains using openhdemg 2026-06-22 eess.SP;q-bio.NC;q-bio.QM q-bio.NC https://arxiv.org/abs/2606.23066 False False 2606.23114 Circadian output network can buffer period variability 2026-06-22 q-bio.MN q-bio.MN https://arxiv.org/abs/2606.23114 False False 2606.23148 Bayesian modelling of herd-level infection dynamics in cattle: Local spread as the primary driver of Salmonella Dublin persistence on Öland 2026-06-22 q-bio.PE q-bio.PE https://arxiv.org/abs/2606.23148 False False 2606.23245 Predator-associated cues promote host riding, and coupling to mobile hosts improves survival in an epizoic limpet 2026-06-22 q-bio.QM q-bio.QM https://arxiv.org/abs/2606.23245 False False 2606.23253 Reduced-Alphabet QUBO/Ising Formulation for Constraint-Driven Cyclic Peptide Sequence Design 2026-06-22 physics.chem-ph;q-bio.BM q-bio.BM https://arxiv.org/abs/2606.23253 False False 2606.23325 The adaptive nature of confirmation bias 2026-06-22 physics.quant-ph;q-bio.NC q-bio.NC https://arxiv.org/abs/2606.23325 False False 2606.23470 From Lab to Landscape: Assessing the Impact of Pesticides on Pollinator Populations Based on Laboratory Data by Combining ALMaSS and BufferGUTS 2026-06-22 q-bio.PE q-bio.PE https://arxiv.org/abs/2606.23470 False False 2606.23561 Electrochemical DNA Hairpin Sensors for Differentiating Small Molecule Intercalation from Minor Groove Binding 2026-06-22 physics.bio-ph;q-bio.BM q-bio.BM https://arxiv.org/abs/2606.23561 False False 2606.22823 Retrieval-Augmented Multimodal Learning for Enzyme-Substrate Interaction Prediction Under Low-Homology Shift 2026-06-22 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.22823 False False 2606.22949 When do correlations reflect biological similarity in ecological dynamics? 2026-06-22 q-bio.PE q-bio.PE https://arxiv.org/abs/2606.22949 False False 2606.23066 Estimating common synaptic inputs to spinal motor neurons from motor unit spike trains using openhdemg 2026-06-22 eess.SP;q-bio.NC;q-bio.QM q-bio.NC https://arxiv.org/abs/2606.23066 False False 2606.23114 Circadian output network can buffer period variability 2026-06-22 q-bio.MN q-bio.MN https://arxiv.org/abs/2606.23114 False False 2606.23148 Bayesian modelling of herd-level infection dynamics in cattle: Local spread as the primary driver of Salmonella Dublin persistence on Öland 2026-06-22 q-bio.PE q-bio.PE https://arxiv.org/abs/2606.23148 False False 2606.23245 Predator-associated cues promote host riding, and coupling to mobile hosts improves survival in an epizoic limpet 2026-06-22 q-bio.QM q-bio.QM https://arxiv.org/abs/2606.23245 False False 2606.23253 Reduced-Alphabet QUBO/Ising Formulation for Constraint-Driven Cyclic Peptide Sequence Design 2026-06-22 physics.chem-ph;q-bio.BM q-bio.BM https://arxiv.org/abs/2606.23253 False False 2606.23325 The adaptive nature of confirmation bias 2026-06-22 physics.quant-ph;q-bio.NC q-bio.NC https://arxiv.org/abs/2606.23325 False False 2606.23470 From Lab to Landscape: Assessing the Impact of Pesticides on Pollinator Populations Based on Laboratory Data by Combining ALMaSS and BufferGUTS 2026-06-22 q-bio.PE q-bio.PE https://arxiv.org/abs/2606.23470 False False 2606.23561 Electrochemical DNA Hairpin Sensors for Differentiating Small Molecule Intercalation from Minor Groove Binding 2026-06-22 physics.bio-ph;q-bio.BM q-bio.BM https://arxiv.org/abs/2606.23561 False False 2606.23871 Federated Survival Analysis in Healthcare: A Multi-Model Evaluation on Cross-Institutional Heterogeneous Breast Cancer Data 2026-06-22 cs.LG;q-bio.QM;stat.ME;stat.ML q-bio.QM https://arxiv.org/abs/2606.23871 False False 2606.23874 Identifying structural design principles shaping the computational abilities of recurrent neural networks 2026-06-22 cs.NE;q-bio.NC q-bio.NC https://arxiv.org/abs/2606.23874 False False 2606.23946 Mutant Fixation for a Stochastic Evolutionary Model in Fragmented Populations 2026-06-22 q-bio.PE q-bio.PE https://arxiv.org/abs/2606.23946 False False 2606.23957 Learning the Koopman Operator using Attention Free Transformers 2026-06-22 cs.LG;cs.SY;eess.SY;q-bio.MN q-bio.MN https://arxiv.org/abs/2606.23957 False False 2606.23964 3D Masked Autoencoders are Robust Learners of Volumetric and Multimodal Cellular Representations for Microscopy 2026-06-22 cs.CV;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.23964 False False 2606.23871 Federated Survival Analysis in Healthcare: A Multi-Model Evaluation on Cross-Institutional Heterogeneous Breast Cancer Data 2026-06-22 cs.LG;q-bio.QM;stat.ME;stat.ML q-bio.QM https://arxiv.org/abs/2606.23871 False False 2606.23874 Identifying structural design principles shaping the computational abilities of recurrent neural networks 2026-06-22 cs.NE;q-bio.NC q-bio.NC https://arxiv.org/abs/2606.23874 False False 2606.23946 Mutant Fixation for a Stochastic Evolutionary Model in Fragmented Populations 2026-06-22 q-bio.PE q-bio.PE https://arxiv.org/abs/2606.23946 False False 2606.23957 Learning the Koopman Operator using Attention Free Transformers 2026-06-22 cs.LG;cs.SY;eess.SY;q-bio.MN q-bio.MN https://arxiv.org/abs/2606.23957 False False 2606.23964 3D Masked Autoencoders are Robust Learners of Volumetric and Multimodal Cellular Representations for Microscopy 2026-06-22 cs.CV;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.23964 False False 2606.24938 Privacy-preserving federated tensor decomposition of single-cell immune data: recovering multicellular programs across institutions 2026-06-22 cs.AI;q-bio.GN q-bio.GN https://arxiv.org/abs/2606.24938 False False 2606.24940 Stable-Shift: Biologically Structured Prediction of Transcriptional Responses to Unseen Gene Perturbations 2026-06-22 cs.AI;cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2606.24940 False False 2606.24938 Privacy-preserving federated tensor decomposition of single-cell immune data: recovering multicellular programs across institutions 2026-06-22 cs.AI;q-bio.GN q-bio.GN https://arxiv.org/abs/2606.24938 False False 2606.24940 Stable-Shift: Biologically Structured Prediction of Transcriptional Responses to Unseen Gene Perturbations 2026-06-22 cs.AI;cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2606.24940 False False 2606.23470 From Lab to Landscape: Assessing the Impact of Pesticides on Pollinator Populations Based on Laboratory Data by Combining ALMaSS and BufferGUTS 2026-06-22 q-bio.PE q-bio.PE https://arxiv.org/abs/2606.23470 False False 2606.23470 From Lab to Landscape: Assessing the Impact of Pesticides on Pollinator Populations Based on Laboratory Data by Combining ALMaSS and BufferGUTS 2026-06-22 q-bio.PE q-bio.PE https://arxiv.org/abs/2606.23470 False False 2606.23964 3D Masked Autoencoders are Robust Learners of Volumetric and Multimodal Cellular Representations for Microscopy 2026-06-22 cs.CV;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.23964 False False 2606.23964 3D Masked Autoencoders are Robust Learners of Volumetric and Multimodal Cellular Representations for Microscopy 2026-06-22 cs.CV;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.23964 False False 2606.22279 Inferring and Predicting Clade-Level Relative Transmission Fitness in Seasonal Influenza A Using Differential Population Growth Rate and Deep Learning 2026-06-21 q-bio.PE q-bio.PE https://arxiv.org/abs/2606.22279 False False 2606.22281 Glass-based physical models for tissue mechanics 2026-06-21 physics.bio-ph;physics.soft;q-bio.TO q-bio.TO https://arxiv.org/abs/2606.22281 0.7702 0.7751 True 6 5.4 False 2606.22440 Data-driven geometric phase in biological locomotion 2026-06-21 physics.AO;physics.bio-ph;physics.data-an;physics.soft;q-bio.CB q-bio.CB https://arxiv.org/abs/2606.22440 False False 2606.22448 Kinetics of template-directed multistate copolymerization 2026-06-21 physics.stat-mech;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.22448 False False 2606.22452 Kinetics of multistate DNA polymerases 2026-06-21 physics.stat-mech;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.22452 False False 2606.22561 quaint: An R Package for detecting introgression across a phylogeny using discordant gene tree topologies 2026-06-21 q-bio.PE;q-bio.QM q-bio.PE https://arxiv.org/abs/2606.22561 False False 2606.22582 Upstream reciprocity versus downstream reciprocity: Catalyzing cooperation 2026-06-21 physics.soc-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2606.22582 False False 2606.22695 SPIDER -- Stitched Power-spectra for Inferring Directed information flow from incomplete and asynchronous Experimental Recordings 2026-06-21 q-bio.NC;stat.ME q-bio.NC https://arxiv.org/abs/2606.22695 False False 2606.22279 Inferring and Predicting Clade-Level Relative Transmission Fitness in Seasonal Influenza A Using Differential Population Growth Rate and Deep Learning 2026-06-21 q-bio.PE q-bio.PE https://arxiv.org/abs/2606.22279 False False 2606.22281 Glass-based physical models for tissue mechanics 2026-06-21 physics.bio-ph;physics.soft;q-bio.TO q-bio.TO https://arxiv.org/abs/2606.22281 0.7702 0.7751 True 6 5.4 False 2606.22440 Data-driven geometric phase in biological locomotion 2026-06-21 physics.AO;physics.bio-ph;physics.data-an;physics.soft;q-bio.CB q-bio.CB https://arxiv.org/abs/2606.22440 False False 2606.22448 Kinetics of template-directed multistate copolymerization 2026-06-21 physics.stat-mech;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.22448 False False 2606.22452 Kinetics of multistate DNA polymerases 2026-06-21 physics.stat-mech;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.22452 False False 2606.22561 quaint: An R Package for detecting introgression across a phylogeny using discordant gene tree topologies 2026-06-21 q-bio.PE;q-bio.QM q-bio.PE https://arxiv.org/abs/2606.22561 False False 2606.22582 Upstream reciprocity versus downstream reciprocity: Catalyzing cooperation 2026-06-21 physics.soc-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2606.22582 False False 2606.22695 SPIDER -- Stitched Power-spectra for Inferring Directed information flow from incomplete and asynchronous Experimental Recordings 2026-06-21 q-bio.NC;stat.ME q-bio.NC https://arxiv.org/abs/2606.22695 False False 2606.23744 Performance and Interpretability of Convolutional, Transformer, and Hybrid Deep Learning Models in Colorectal Histology Classification 2026-06-21 cs.CV;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.23744 False False 2606.23745 JEDEL: Zero-Shot DNA-Encoded Library Design for Early-Stage Drug Discovery 2026-06-21 cs.AI;cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2606.23745 False False 2606.23744 Performance and Interpretability of Convolutional, Transformer, and Hybrid Deep Learning Models in Colorectal Histology Classification 2026-06-21 cs.CV;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.23744 False False 2606.23745 JEDEL: Zero-Shot DNA-Encoded Library Design for Early-Stage Drug Discovery 2026-06-21 cs.AI;cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2606.23745 False False 2606.30668 Emergent Culture in Minimal LLM Systems 2026-06-21 cs.AI;cs.CL;cs.MA;cs.NE;physics.AO;q-bio.PE q-bio.PE https://arxiv.org/abs/2606.30668 False False 2606.30668 Emergent Culture in Minimal LLM Systems 2026-06-21 cs.AI;cs.CL;cs.MA;cs.NE;physics.AO;q-bio.PE q-bio.PE https://arxiv.org/abs/2606.30668 False False 2606.22695 SPIDER -- Stitched Power-spectra for Inferring Directed information flow from incomplete and asynchronous Experimental Recordings 2026-06-21 q-bio.NC;stat.ME q-bio.NC https://arxiv.org/abs/2606.22695 False False 2606.22695 SPIDER -- Stitched Power-spectra for Inferring Directed information flow from incomplete and asynchronous Experimental Recordings 2026-06-21 q-bio.NC;stat.ME q-bio.NC https://arxiv.org/abs/2606.22695 False False 2606.21818 Dynamic Computerized Tumbling-E Testing for Temporal Reliability of Human Sequential Perceptual Decisions 2026-06-20 q-bio.NC q-bio.NC https://arxiv.org/abs/2606.21818 False False 2606.21940 DevoTG: Temporal Graph Neural Networks for Modeling C. elegans Developmental Connectomics 2026-06-20 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2606.21940 False False 2606.21987 Fabrication Of Bilayer Nanofibers From Poly Xylitol Dodecanedioic Acid, Poly Caprolactone, Gelatin Biological Macromolecules And Surface Modification Via Spin Coating Of Capsules For Skin Wound Treatment 2026-06-20 q-bio.TO q-bio.TO https://arxiv.org/abs/2606.21987 False False 2606.22001 Evolutionary Entropy Shapes Reproductive Lifespan in Age-Structured Populations 2026-06-20 math.DS;q-bio.PE q-bio.PE https://arxiv.org/abs/2606.22001 False False 2606.22138 BioMatrix: Towards a Comprehensive Biological Foundation Model Spanning the Modality Matrix of Sequences, Structures, and Language 2026-06-20 cs.AI;cs.CL;cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2606.22138 False False 2606.21818 Dynamic Computerized Tumbling-E Testing for Temporal Reliability of Human Sequential Perceptual Decisions 2026-06-20 q-bio.NC q-bio.NC https://arxiv.org/abs/2606.21818 False False 2606.21940 DevoTG: Temporal Graph Neural Networks for Modeling C. elegans Developmental Connectomics 2026-06-20 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2606.21940 False False 2606.21987 Fabrication Of Bilayer Nanofibers From Poly Xylitol Dodecanedioic Acid, Poly Caprolactone, Gelatin Biological Macromolecules And Surface Modification Via Spin Coating Of Capsules For Skin Wound Treatment 2026-06-20 q-bio.TO q-bio.TO https://arxiv.org/abs/2606.21987 False False 2606.22001 Evolutionary Entropy Shapes Reproductive Lifespan in Age-Structured Populations 2026-06-20 math.DS;q-bio.PE q-bio.PE https://arxiv.org/abs/2606.22001 False False 2606.22138 BioMatrix: Towards a Comprehensive Biological Foundation Model Spanning the Modality Matrix of Sequences, Structures, and Language 2026-06-20 cs.AI;cs.CL;cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2606.22138 False False 2606.21174 HERO: Hypothesis-Driven Evidence Retrieval from Omics for Multi-Task Breast Cancer Analysis 2026-06-19 cs.CV;q-bio.GN q-bio.GN https://arxiv.org/abs/2606.21174 False False 2606.21314 Dynamic dark-field FFOCT and dynamic reflection differential phase contrast for label-free functional imaging at reflective biomaterial interfaces 2026-06-19 physics.optics;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.21314 False False 2606.21351 Surveying the adaptive landscapes of 10,000 antibodies 2026-06-19 q-bio.PE q-bio.PE https://arxiv.org/abs/2606.21351 False False 2606.21432 Soliton-like Waves in a Two-Dimensional Recurrent Spiking Neural Network with Weighted Spike-Timing-Dependent Plasticity 2026-06-19 cs.NE;q-bio.NC q-bio.NC https://arxiv.org/abs/2606.21432 0.7792 0.7667 True 6 6.9 False 2606.21481 Mechanistic mathematical model of the in vitro infection dynamics of Bunyamwera and Batai viruses including MOI-dependent shortening of the eclipse phase 2026-06-19 q-bio.QM q-bio.QM https://arxiv.org/abs/2606.21481 False False 2606.21508 Adaptive conduction delays and phase locking in spiking Haken Lighthouse networks 2026-06-19 q-bio.NC q-bio.NC https://arxiv.org/abs/2606.21508 False False 2606.21608 CurvSegFlow: Time-Conditioned Flow Matching for Robust Segmentation of Curvilinear Structures in Noisy Biomedical Images 2026-06-19 cs.CV;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.21608 False False 2606.21681 Heavy-Tailed Dispersal Kernels from Stopped Subdiffusive Fractional Brownian Motion 2026-06-19 physics.stat-mech;q-bio.PE;stat.AP q-bio.PE https://arxiv.org/abs/2606.21681 False False 2606.21703 Delay coordinates synchronization and induces abrupt transition in excitable networks 2026-06-19 math.DS;q-bio.NC q-bio.NC https://arxiv.org/abs/2606.21703 False False 2606.21785 Mostly-monocular responses and other visual functions in a multiscale network model of Macaque V1 2026-06-19 q-bio.NC q-bio.NC https://arxiv.org/abs/2606.21785 False False 2606.21174 HERO: Hypothesis-Driven Evidence Retrieval from Omics for Multi-Task Breast Cancer Analysis 2026-06-19 cs.CV;q-bio.GN q-bio.GN https://arxiv.org/abs/2606.21174 False False 2606.21314 Dynamic dark-field FFOCT and dynamic reflection differential phase contrast for label-free functional imaging at reflective biomaterial interfaces 2026-06-19 physics.optics;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.21314 False False 2606.21351 Surveying the adaptive landscapes of 10,000 antibodies 2026-06-19 q-bio.PE q-bio.PE https://arxiv.org/abs/2606.21351 False False 2606.21432 Soliton-like Waves in a Two-Dimensional Recurrent Spiking Neural Network with Weighted Spike-Timing-Dependent Plasticity 2026-06-19 cs.NE;q-bio.NC q-bio.NC https://arxiv.org/abs/2606.21432 0.7792 0.7667 True 6 6.9 False 2606.21481 Mechanistic mathematical model of the in vitro infection dynamics of Bunyamwera and Batai viruses including MOI-dependent shortening of the eclipse phase 2026-06-19 q-bio.QM q-bio.QM https://arxiv.org/abs/2606.21481 False False 2606.21508 Adaptive conduction delays and phase locking in spiking Haken Lighthouse networks 2026-06-19 q-bio.NC q-bio.NC https://arxiv.org/abs/2606.21508 False False 2606.21608 CurvSegFlow: Time-Conditioned Flow Matching for Robust Segmentation of Curvilinear Structures in Noisy Biomedical Images 2026-06-19 cs.CV;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.21608 False False 2606.21681 Heavy-Tailed Dispersal Kernels from Stopped Subdiffusive Fractional Brownian Motion 2026-06-19 physics.stat-mech;q-bio.PE;stat.AP q-bio.PE https://arxiv.org/abs/2606.21681 False False 2606.21703 Delay coordinates synchronization and induces abrupt transition in excitable networks 2026-06-19 math.DS;q-bio.NC q-bio.NC https://arxiv.org/abs/2606.21703 False False 2606.21785 Mostly-monocular responses and other visual functions in a multiscale network model of Macaque V1 2026-06-19 q-bio.NC q-bio.NC https://arxiv.org/abs/2606.21785 False False 2606.21785 Mostly-monocular responses and other visual functions in a multiscale network model of Macaque V1 2026-06-19 q-bio.NC q-bio.NC https://arxiv.org/abs/2606.21785 False False 2607.16225 Overcoming the BCI Calibration Bottleneck: A Clinically-Grounded Architecture using Riemannian Alignment and Stochastic Weight Averaging 2026-06-19 cs.LG;eess.SP;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.16225 False False 2607.16225 Overcoming the BCI Calibration Bottleneck: A Clinically-Grounded Architecture using Riemannian Alignment and Stochastic Weight Averaging 2026-06-19 cs.LG;eess.SP;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.16225 False False 2606.19739 Robust probabilistic measurement of structural-functional module consistency in infant brain development 2026-06-18 q-bio.NC q-bio.NC https://arxiv.org/abs/2606.19739 False False 2606.19762 Oscillations and Spatial Patterns in Large-Scale Stochastic Gene Regulatory Networks 2026-06-18 q-bio.MN q-bio.MN https://arxiv.org/abs/2606.19762 False False 2606.20096 Quadratic Forms for Measuring Geometric Trees in 3-dimensional Space 2026-06-18 cs.CG;q-bio.NC q-bio.NC https://arxiv.org/abs/2606.20096 False False 2606.20164 MedRLM: Recursive Multimodal Health Intelligence for Long-Context Clinical Reasoning, Sensor-Guided Screening, Evidence-Grounded Decision Support, and Community-to-Tertiary Referral Optimization 2026-06-18 cs.AI;cs.CL;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.20164 False False 2606.20223 DeepForestVisionV2: Ecology-Driven Taxonomy Expansion for Camera-Trap Monitoring in African Tropical Forests 2026-06-18 cs.CV;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.20223 False False 2606.20315 bioETH-Beacon: A Confidential On-Chain Genomic Beacon with Encrypted Counts, Filters, and Bounded Noise over a Fully Homomorphic EVM 2026-06-18 cs.CR;q-bio.GN q-bio.GN https://arxiv.org/abs/2606.20315 False False 2606.20345 Synchronization modes in bipartite oscillator networks 2026-06-18 physics.AO;q-bio.NC q-bio.NC https://arxiv.org/abs/2606.20345 False False 2606.20489 West Nile virus outbreak in Italy modelled with the quantum Game of Life 2026-06-18 physics.CG;physics.bio-ph;q-bio.PE;stat.AP q-bio.PE https://arxiv.org/abs/2606.20489 False False 2606.19739 Robust probabilistic measurement of structural-functional module consistency in infant brain development 2026-06-18 q-bio.NC q-bio.NC https://arxiv.org/abs/2606.19739 False False 2606.19762 Oscillations and Spatial Patterns in Large-Scale Stochastic Gene Regulatory Networks 2026-06-18 q-bio.MN q-bio.MN https://arxiv.org/abs/2606.19762 False False 2606.20096 Quadratic Forms for Measuring Geometric Trees in 3-dimensional Space 2026-06-18 cs.CG;q-bio.NC q-bio.NC https://arxiv.org/abs/2606.20096 False False 2606.20164 MedRLM: Recursive Multimodal Health Intelligence for Long-Context Clinical Reasoning, Sensor-Guided Screening, Evidence-Grounded Decision Support, and Community-to-Tertiary Referral Optimization 2026-06-18 cs.AI;cs.CL;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.20164 False False 2606.20223 DeepForestVisionV2: Ecology-Driven Taxonomy Expansion for Camera-Trap Monitoring in African Tropical Forests 2026-06-18 cs.CV;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.20223 False False 2606.20315 bioETH-Beacon: A Confidential On-Chain Genomic Beacon with Encrypted Counts, Filters, and Bounded Noise over a Fully Homomorphic EVM 2026-06-18 cs.CR;q-bio.GN q-bio.GN https://arxiv.org/abs/2606.20315 False False 2606.20345 Synchronization modes in bipartite oscillator networks 2026-06-18 physics.AO;q-bio.NC q-bio.NC https://arxiv.org/abs/2606.20345 False False 2606.20489 West Nile virus outbreak in Italy modelled with the quantum Game of Life 2026-06-18 physics.CG;physics.bio-ph;q-bio.PE;stat.AP q-bio.PE https://arxiv.org/abs/2606.20489 False False 2606.20765 Dataset-Aware Cold-Start Active Learning for Annotation-Efficient 3D Medical Image Segmentation 2026-06-18 cs.LG;eess.IV;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.20765 False False 2606.20844 Relational Gaze Transitions During Encoding Predict Episodic Recall of Naturalistic Scenes 2026-06-18 q-bio.NC q-bio.NC https://arxiv.org/abs/2606.20844 False False 2606.20906 MMGNN: Multi-level, multi-color graph neural networks for molecular property prediction 2026-06-18 cs.AI;cs.LG;q-bio.MN q-bio.MN https://arxiv.org/abs/2606.20906 False False 2606.20765 Dataset-Aware Cold-Start Active Learning for Annotation-Efficient 3D Medical Image Segmentation 2026-06-18 cs.LG;eess.IV;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.20765 False False 2606.20844 Relational Gaze Transitions During Encoding Predict Episodic Recall of Naturalistic Scenes 2026-06-18 q-bio.NC q-bio.NC https://arxiv.org/abs/2606.20844 False False 2606.20906 MMGNN: Multi-level, multi-color graph neural networks for molecular property prediction 2026-06-18 cs.AI;cs.LG;q-bio.MN q-bio.MN https://arxiv.org/abs/2606.20906 False False 2606.20345 Synchronization modes in bipartite oscillator networks 2026-06-18 physics.AO;q-bio.NC q-bio.NC https://arxiv.org/abs/2606.20345 False False 2606.20345 Synchronization modes in bipartite oscillator networks 2026-06-18 physics.AO;q-bio.NC q-bio.NC https://arxiv.org/abs/2606.20345 False False 2606.20345 Synchronization modes in bipartite oscillator networks 2026-06-18 physics.AO;q-bio.NC q-bio.NC https://arxiv.org/abs/2606.20345 False False 2606.20345 Synchronization modes in bipartite oscillator networks 2026-06-18 physics.AO;q-bio.NC q-bio.NC https://arxiv.org/abs/2606.20345 False False 2606.20345 Synchronization modes in bipartite oscillator networks 2026-06-18 physics.AO;q-bio.NC q-bio.NC https://arxiv.org/abs/2606.20345 False False 2606.20345 Synchronization modes in bipartite oscillator networks 2026-06-18 physics.AO;q-bio.NC q-bio.NC https://arxiv.org/abs/2606.20345 False False 2606.20345 Synchronization modes in bipartite oscillator networks 2026-06-18 physics.AO;q-bio.NC q-bio.NC https://arxiv.org/abs/2606.20345 False False 2606.18575 Adaptive COVID-19 Trajectory Forecasting Using MAB-Inspired Ensemble Weighting 2026-06-17 q-bio.QM q-bio.QM https://arxiv.org/abs/2606.18575 False False 2606.18640 MetaboNet-Bench: A Multi-modal Benchmark for Glucose Forecasting in Type 1 Diabetes 2026-06-17 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.18640 False False 2606.18660 Effects of spatial environmental noise on evolution of cooperation 2026-06-17 physics.soc-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2606.18660 False False 2606.18667 Can neurons speak? Semantic narration of vision at single-cell resolution 2026-06-17 q-bio.NC;q-bio.QM q-bio.NC https://arxiv.org/abs/2606.18667 False False 2606.18672 scGTN: Deep Siamese Graph Transformer Network for Single-cell RNA Sequencing Clustering 2026-06-17 cs.AI;cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2606.18672 False False 2606.18703 Contextualizing Biological Language Models across Modalities via Logit-Space Contrastive Alignment 2026-06-17 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.18703 False False 2606.19081 Retrieval-Based Brain Decoding by Alignment, not Complexity 2026-06-17 cs.HC;q-bio.NC q-bio.NC https://arxiv.org/abs/2606.19081 False False 2606.19280 CollaboratoR: A scalable workflow for collaborative data entry and management 2026-06-17 q-bio.QM q-bio.QM https://arxiv.org/abs/2606.19280 False False 2606.18575 Adaptive COVID-19 Trajectory Forecasting Using MAB-Inspired Ensemble Weighting 2026-06-17 q-bio.QM q-bio.QM https://arxiv.org/abs/2606.18575 False False 2606.18640 MetaboNet-Bench: A Multi-modal Benchmark for Glucose Forecasting in Type 1 Diabetes 2026-06-17 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.18640 False False 2606.18660 Effects of spatial environmental noise on evolution of cooperation 2026-06-17 physics.soc-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2606.18660 False False 2606.18667 Can neurons speak? Semantic narration of vision at single-cell resolution 2026-06-17 q-bio.NC;q-bio.QM q-bio.NC https://arxiv.org/abs/2606.18667 False False 2606.18672 scGTN: Deep Siamese Graph Transformer Network for Single-cell RNA Sequencing Clustering 2026-06-17 cs.AI;cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2606.18672 False False 2606.18703 Contextualizing Biological Language Models across Modalities via Logit-Space Contrastive Alignment 2026-06-17 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.18703 False False 2606.19081 Retrieval-Based Brain Decoding by Alignment, not Complexity 2026-06-17 cs.HC;q-bio.NC q-bio.NC https://arxiv.org/abs/2606.19081 False False 2606.19280 CollaboratoR: A scalable workflow for collaborative data entry and management 2026-06-17 q-bio.QM q-bio.QM https://arxiv.org/abs/2606.19280 False False 2606.19396 BioHarness: Substrate-Aware Evidence Assembly for Biomedical Question Answering across Literature, Knowledge Bases, and Biological Atlases 2026-06-17 q-bio.QM q-bio.QM https://arxiv.org/abs/2606.19396 False False 2606.19405 Multi-type branching inference on contact trees with application to COVID-19 2026-06-17 math.DS;q-bio.PE;q-bio.QM q-bio.PE https://arxiv.org/abs/2606.19405 False False 2606.19396 BioHarness: Substrate-Aware Evidence Assembly for Biomedical Question Answering across Literature, Knowledge Bases, and Biological Atlases 2026-06-17 q-bio.QM q-bio.QM https://arxiv.org/abs/2606.19396 False False 2606.19405 Multi-type branching inference on contact trees with application to COVID-19 2026-06-17 math.DS;q-bio.PE;q-bio.QM q-bio.PE https://arxiv.org/abs/2606.19405 False False 2606.20733 Dissecting emerging slow rhythms in delay-coupled neural oscillators 2026-06-17 math.DS;physics.CD;q-bio.NC;q-bio.QM q-bio.NC https://arxiv.org/abs/2606.20733 False False 2606.19405 Multi-type branching inference on contact trees with application to COVID-19 2026-06-17 math.DS;q-bio.PE;q-bio.QM q-bio.PE https://arxiv.org/abs/2606.19405 False False 2606.20733 Dissecting emerging slow rhythms in delay-coupled neural oscillators 2026-06-17 math.DS;physics.CD;q-bio.NC;q-bio.QM q-bio.NC https://arxiv.org/abs/2606.20733 False False 2606.19405 Multi-type branching inference on contact trees with application to COVID-19 2026-06-17 math.DS;q-bio.PE;q-bio.QM q-bio.PE https://arxiv.org/abs/2606.19405 False False 2606.18640 MetaboNet-Bench: A Multi-modal Benchmark for Glucose Forecasting in Type 1 Diabetes 2026-06-17 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.18640 False False 2606.18640 MetaboNet-Bench: A Multi-modal Benchmark for Glucose Forecasting in Type 1 Diabetes 2026-06-17 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.18640 False False 2606.17420 Feynman Kac Reweighted Schrödinger Bridge Matching for Surface-Based Tau PET Harmonization 2026-06-16 cs.AI;eess.IV;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.17420 False False 2606.17456 Embodiment Shapes Rolling Behavior in a Multimodal Infant Model 2026-06-16 cs.RO;q-bio.NC q-bio.NC https://arxiv.org/abs/2606.17456 False False 2606.17457 Aging induced structural alterations in SR-Mitochondria interaction in skeletal muscle: Emerging insights 2026-06-16 q-bio.SC q-bio.SC https://arxiv.org/abs/2606.17457 False False 2606.17586 Aggregation as a Double-Edged Sword: Fear, Allee Effects, and Finite-Time Collapse 2026-06-16 math.DS;q-bio.PE q-bio.PE https://arxiv.org/abs/2606.17586 False False 2606.17668 ASTEROID: A Spatiotemporal Information Transformer for Forecasting Multi-Step Time Series of Molecular Dynamics 2026-06-16 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.17668 False False 2606.17736 Ten Years of the Stochastic Resonance Model of Tinnitus: From Phantom Perception to Adaptive Sensory Optimization 2026-06-16 q-bio.NC q-bio.NC https://arxiv.org/abs/2606.17736 False False 2606.17742 BrainWorld: A Structural-Prior-Conditioned Generative Model for Whole-Brain 4D fMRI Dynamics 2026-06-16 cs.CV;q-bio.NC q-bio.NC https://arxiv.org/abs/2606.17742 False False 2606.17745 Separating wiring-specific from statistical control of dynamics in a complete connectome 2026-06-16 q-bio.NC q-bio.NC https://arxiv.org/abs/2606.17745 False False 2606.17891 A nonlinear theory for chemotactic fronts of mixed populations 2026-06-16 math.AP;physics.AO;physics.bio-ph;q-bio.CB q-bio.CB https://arxiv.org/abs/2606.17891 False False 2606.18058 Multiscale reconstruction of protein conformations from cryo-EM images 2026-06-16 eess.IV;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.18058 False False 2606.18179 PyPeakRankR: Reproducible Peak-Level Feature Extraction for Regulatory Element Ranking 2026-06-16 q-bio.GN q-bio.GN https://arxiv.org/abs/2606.18179 False False 2606.17420 Feynman Kac Reweighted Schrödinger Bridge Matching for Surface-Based Tau PET Harmonization 2026-06-16 cs.AI;eess.IV;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.17420 False False 2606.17456 Embodiment Shapes Rolling Behavior in a Multimodal Infant Model 2026-06-16 cs.RO;q-bio.NC q-bio.NC https://arxiv.org/abs/2606.17456 False False 2606.17457 Aging induced structural alterations in SR-Mitochondria interaction in skeletal muscle: Emerging insights 2026-06-16 q-bio.SC q-bio.SC https://arxiv.org/abs/2606.17457 False False 2606.17586 Aggregation as a Double-Edged Sword: Fear, Allee Effects, and Finite-Time Collapse 2026-06-16 math.DS;q-bio.PE q-bio.PE https://arxiv.org/abs/2606.17586 False False 2606.17668 ASTEROID: A Spatiotemporal Information Transformer for Forecasting Multi-Step Time Series of Molecular Dynamics 2026-06-16 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.17668 False False 2606.17736 Ten Years of the Stochastic Resonance Model of Tinnitus: From Phantom Perception to Adaptive Sensory Optimization 2026-06-16 q-bio.NC q-bio.NC https://arxiv.org/abs/2606.17736 False False 2606.17742 BrainWorld: A Structural-Prior-Conditioned Generative Model for Whole-Brain 4D fMRI Dynamics 2026-06-16 cs.CV;q-bio.NC q-bio.NC https://arxiv.org/abs/2606.17742 False False 2606.17745 Separating wiring-specific from statistical control of dynamics in a complete connectome 2026-06-16 q-bio.NC q-bio.NC https://arxiv.org/abs/2606.17745 False False 2606.17891 A nonlinear theory for chemotactic fronts of mixed populations 2026-06-16 math.AP;physics.AO;physics.bio-ph;q-bio.CB q-bio.CB https://arxiv.org/abs/2606.17891 False False 2606.18058 Multiscale reconstruction of protein conformations from cryo-EM images 2026-06-16 eess.IV;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.18058 False False 2606.18179 PyPeakRankR: Reproducible Peak-Level Feature Extraction for Regulatory Element Ranking 2026-06-16 q-bio.GN q-bio.GN https://arxiv.org/abs/2606.18179 False False 2606.18390 MOLAR: Learning Multimodal Molecular Representations from Noisy Labels 2026-06-16 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.18390 False False 2606.18420 Measurement noise limits the advantage of nonlinear models over linear models in biomedical prediction 2026-06-16 cs.LG;q-bio.QM;stat.ML q-bio.QM https://arxiv.org/abs/2606.18420 False False 2606.18495 Bayesian Sampling of Structural Ensembles: The Role of Ensemble-Counting Measures 2026-06-16 physics.bio-ph;physics.chem-ph;physics.comp-ph;q-bio.BM q-bio.BM https://arxiv.org/abs/2606.18495 False False 2606.18523 DART: A design-aware microfluidic chip paradigm for real-time live-cell image analysis 2026-06-16 cs.CV;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.18523 False False 2606.18390 MOLAR: Learning Multimodal Molecular Representations from Noisy Labels 2026-06-16 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.18390 False False 2606.18420 Measurement noise limits the advantage of nonlinear models over linear models in biomedical prediction 2026-06-16 cs.LG;q-bio.QM;stat.ML q-bio.QM https://arxiv.org/abs/2606.18420 False False 2606.18495 Bayesian Sampling of Structural Ensembles: The Role of Ensemble-Counting Measures 2026-06-16 physics.bio-ph;physics.chem-ph;physics.comp-ph;q-bio.BM q-bio.BM https://arxiv.org/abs/2606.18495 False False 2606.18523 DART: A design-aware microfluidic chip paradigm for real-time live-cell image analysis 2026-06-16 cs.CV;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.18523 False False 2606.17745 A frozen rate operator from the complete larval connectome: degree and weight govern the gross response, exact wiring governs input routing and mushroom-body modes 2026-06-16 q-bio.NC q-bio.NC https://arxiv.org/abs/2606.17745 False False 2606.17745 A frozen rate operator from the complete larval connectome: degree and weight govern the gross response, exact wiring governs input routing and mushroom-body modes 2026-06-16 q-bio.NC q-bio.NC https://arxiv.org/abs/2606.17745 False False 2606.17420 Feynman Kac Reweighted Schrödinger Bridge Matching for Surface-Based Tau PET Harmonization 2026-06-16 cs.AI;eess.IV;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.17420 False False 2606.17420 Feynman Kac Reweighted Schrödinger Bridge Matching for Surface-Based Tau PET Harmonization 2026-06-16 cs.AI;eess.IV;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.17420 False False 2607.19372 Beyond Confidence in AI-Assisted Colonoscopy: A Spatial, Temporal and Quality-Aware Audit Framework for Endoscopic AI Review 2026-06-16 eess.IV;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.19372 False False 2607.19372 endoExplain: A reproducible protocol for auditing score-localisation discordance in colonoscopy image classifiers 2026-06-16 eess.IV;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.19372 False False 2607.19372 endoExplain: A reproducible protocol for auditing score-localisation discordance in colonoscopy image classifiers 2026-06-16 eess.IV;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.19372 False False 2606.16294 Sex-based Network-Specific Differences in Connectomes: A Krakencoder-Based Analysis 2026-06-15 cs.CV;q-bio.NC q-bio.NC https://arxiv.org/abs/2606.16294 False False 2606.16305 Extended Kalman Filter-Based State Estimation for a Nine-Compartment Nonlinear Epidemic Model -- Convergence Analysis and In-Silico Benchmark Calibrated on the COVID-19 Third Wave in Italy 2026-06-15 cs.SY;eess.SY;math.OC;q-bio.PE q-bio.PE https://arxiv.org/abs/2606.16305 False False 2606.16517 How Post-Training Shapes Biological Reasoning Models 2026-06-15 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.16517 False False 2606.16540 MultiMolecule: a modular ecosystem for biomolecular sequence-model workflows 2026-06-15 cs.LG;q-bio.BM;q-bio.GN;q-bio.QM q-bio.BM https://arxiv.org/abs/2606.16540 False False 2606.16590 Infant Spontaneous Movement Noise Improves Exploration in Deep RL 2026-06-15 cs.AI;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2606.16590 False False 2606.16614 Oscillating concentrations suppress condensate coarsening 2026-06-15 physics.bio-ph;physics.soft;q-bio.SC q-bio.SC https://arxiv.org/abs/2606.16614 False False 2606.16693 Learning Hybrid Biophysical Neuron Models with Neural ODEs 2026-06-15 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2606.16693 False False 2606.16694 Adaptive inference and function vectors in deep transformers 2026-06-15 cs.AI;cs.LG;physics.app-ph;q-bio.NC q-bio.NC https://arxiv.org/abs/2606.16694 False False 2606.16726 Too Few or Too Many? Sample Size Estimation for Differential Abundance Studies 2026-06-15 q-bio.QM;stat.AP q-bio.QM https://arxiv.org/abs/2606.16726 False False 2606.16803 Cell Division Changes Fate Decisions in a Genetic Toggle Switch 2026-06-15 q-bio.MN;q-bio.SC q-bio.MN https://arxiv.org/abs/2606.16803 False False 2606.16950 Latent space mapping of interpretable structural coordinates from stochastic single-molecule signals 2026-06-15 cs.LG;physics.bio-ph;physics.chem-ph;physics.data-an;physics.ins-det;q-bio.BM q-bio.BM https://arxiv.org/abs/2606.16950 False False 2606.16294 Sex-based Network-Specific Differences in Connectomes: A Krakencoder-Based Analysis 2026-06-15 cs.CV;q-bio.NC q-bio.NC https://arxiv.org/abs/2606.16294 False False 2606.16305 Extended Kalman Filter-Based State Estimation for a Nine-Compartment Nonlinear Epidemic Model -- Convergence Analysis and In-Silico Benchmark Calibrated on the COVID-19 Third Wave in Italy 2026-06-15 cs.SY;eess.SY;math.OC;q-bio.PE q-bio.PE https://arxiv.org/abs/2606.16305 False False 2606.16517 How Post-Training Shapes Biological Reasoning Models 2026-06-15 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.16517 False False 2606.16540 MultiMolecule: a modular ecosystem for biomolecular sequence-model workflows 2026-06-15 cs.LG;q-bio.BM;q-bio.GN;q-bio.QM q-bio.BM https://arxiv.org/abs/2606.16540 False False 2606.16614 Oscillating concentrations suppress condensate coarsening 2026-06-15 physics.bio-ph;physics.soft;q-bio.SC q-bio.SC https://arxiv.org/abs/2606.16614 False False 2606.16693 Learning Hybrid Biophysical Neuron Models with Neural ODEs 2026-06-15 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2606.16693 False False 2606.16694 Adaptive inference and function vectors in deep transformers 2026-06-15 cs.AI;cs.LG;physics.app-ph;q-bio.NC q-bio.NC https://arxiv.org/abs/2606.16694 False False 2606.16726 Too Few or Too Many? Sample Size Estimation for Differential Abundance Studies 2026-06-15 q-bio.QM;stat.AP q-bio.QM https://arxiv.org/abs/2606.16726 False False 2606.16803 Cell Division Changes Fate Decisions in a Genetic Toggle Switch 2026-06-15 q-bio.MN;q-bio.SC q-bio.MN https://arxiv.org/abs/2606.16803 False False 2606.16950 Latent space mapping of interpretable structural coordinates from stochastic single-molecule signals 2026-06-15 cs.LG;physics.bio-ph;physics.chem-ph;physics.data-an;physics.ins-det;q-bio.BM q-bio.BM https://arxiv.org/abs/2606.16950 False False 2606.16590 Infant Spontaneous Movement Noise Improves Exploration in Deep RL 2026-06-15 cs.AI;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2606.16590 False False 2606.17115 Probing, Fusion, and Trustworthiness: A Systematic Evaluation of Foundation Model Representations for Multimodal Cancer Analysis 2026-06-15 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.17115 False False 2606.17125 Tipping the Balance: Allee Thresholds, Saddle-Node Bifurcations, and Optimal Sterile-Male Release Strategies for Anopheles Mosquitoes 2026-06-15 math.DS;math.OC;q-bio.PE q-bio.PE https://arxiv.org/abs/2606.17125 False False 2606.17127 Agentic Discovery of Non-Canonical Antimicrobial Peptides with AMPGAN v3 2026-06-15 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.17127 False False 2606.17327 Energy-efficient codon optimization on thermodynamic hardware 2026-06-15 cs.AR;cs.ET;cs.NE;q-bio.BM q-bio.BM https://arxiv.org/abs/2606.17327 False False 2606.17366 A Persistent Homology Signature of Knotting 2026-06-15 math.AT;math.GT;q-bio.BM q-bio.BM https://arxiv.org/abs/2606.17366 False False 2606.16590 Infant Spontaneous Movement Noise Improves Exploration in Deep RL 2026-06-15 cs.AI;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2606.16590 False False 2606.17115 Probing, Fusion, and Trustworthiness: A Systematic Evaluation of Foundation Model Representations for Multimodal Cancer Analysis 2026-06-15 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.17115 False False 2606.17125 Tipping the Balance: Allee Thresholds, Saddle-Node Bifurcations, and Optimal Sterile-Male Release Strategies for Anopheles Mosquitoes 2026-06-15 math.DS;math.OC;q-bio.PE q-bio.PE https://arxiv.org/abs/2606.17125 False False 2606.17127 Agentic Discovery of Non-Canonical Antimicrobial Peptides with AMPGAN v3 2026-06-15 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.17127 False False 2606.17327 Energy-efficient codon optimization on thermodynamic hardware 2026-06-15 cs.AR;cs.ET;cs.NE;q-bio.BM q-bio.BM https://arxiv.org/abs/2606.17327 False False 2606.17366 A Persistent Homology Signature of Knotting 2026-06-15 math.AT;math.GT;q-bio.BM q-bio.BM https://arxiv.org/abs/2606.17366 False False 2606.18295 Archetypal Microbiome Profiles as Indicators of Nitrous Oxide Emission States in Activated Sludge 2026-06-15 q-bio.QM q-bio.QM https://arxiv.org/abs/2606.18295 False False 2606.18295 Archetypal Microbiome Profiles as Indicators of Nitrous Oxide Emission States in Activated Sludge 2026-06-15 q-bio.QM q-bio.QM https://arxiv.org/abs/2606.18295 False False 2606.16803 Cell Division Changes Fate Decisions in a Genetic Toggle Switch 2026-06-15 q-bio.MN;q-bio.SC q-bio.MN https://arxiv.org/abs/2606.16803 False False 2606.16803 Cell Division Changes Fate Decisions in a Genetic Toggle Switch 2026-06-15 q-bio.MN;q-bio.SC q-bio.MN https://arxiv.org/abs/2606.16803 False False 2606.16517 How Post-Training Shapes Biological Reasoning Models 2026-06-15 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.16517 False False 2606.16517 How Post-Training Shapes Biological Reasoning Models 2026-06-15 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.16517 False False 2606.18295 Archetypal Microbiome Profiles as Indicators of Nitrous Oxide Emission States in Activated Sludge 2026-06-15 q-bio.QM q-bio.QM https://arxiv.org/abs/2606.18295 False False 2606.18295 Archetypal Microbiome Profiles as Indicators of Nitrous Oxide Emission States in Activated Sludge 2026-06-15 q-bio.QM q-bio.QM https://arxiv.org/abs/2606.18295 False False 2607.06569 Towards a Pseudo-Labeling Workflow for Celltype-Classification from Explanted Brain Slice Recordings 2026-06-15 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.06569 False False 2607.06569 Towards a Pseudo-Labeling Workflow for Celltype-Classification from Explanted Brain Slice Recordings 2026-06-15 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.06569 False False 2607.22615 Masked Autoencoders Learn Perception-Relevant Representations from Resting State Neural Data 2026-06-15 cs.AI;cs.LG;cs.NE;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.22615 False False 2607.22615 Masked Autoencoders Learn Perception-Relevant Representations from Resting State Neural Data 2026-06-15 cs.AI;cs.LG;cs.NE;q-bio.NC q-bio.NC https://arxiv.org/abs/2607.22615 False False 2606.15530 Self-propelled evolution on regenerating landscapes 2026-06-14 q-bio.PE q-bio.PE https://arxiv.org/abs/2606.15530 False False 2606.15905 What is Life? 2026-06-14 q-bio.MN q-bio.MN https://arxiv.org/abs/2606.15905 False False 2606.15989 Task-guided cross-subject latent alignment: a multi-encoder-decoder VAE 2026-06-14 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2606.15989 False False 2606.16041 EEGDash: An open-source platform for machine learning on public neurophysiological data 2026-06-14 q-bio.NC q-bio.NC https://arxiv.org/abs/2606.16041 False False 2606.16044 Circuit Tracing in Autoregressive Protein Language Models 2026-06-14 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.16044 False False 2606.15530 Self-propelled evolution on regenerating landscapes 2026-06-14 q-bio.PE q-bio.PE https://arxiv.org/abs/2606.15530 False False 2606.15905 What is Life? 2026-06-14 q-bio.MN q-bio.MN https://arxiv.org/abs/2606.15905 False False 2606.15989 Task-guided cross-subject latent alignment: a multi-encoder-decoder VAE 2026-06-14 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2606.15989 False False 2606.16041 EEGDash: An open-source platform for machine learning on public neurophysiological data 2026-06-14 q-bio.NC q-bio.NC https://arxiv.org/abs/2606.16041 False False 2606.16044 Circuit Tracing in Autoregressive Protein Language Models 2026-06-14 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.16044 False False 2606.15192 OpTI-Mouse: Optimization for Targeted Temporal Interference Stimulation in the Mouse Brain 2026-06-13 q-bio.NC q-bio.NC https://arxiv.org/abs/2606.15192 False False 2606.15348 Intrinsic Computational Functionalism and Simulated Consciousness 2026-06-13 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2606.15348 False False 2606.15357 Fast genomic read alignment with minibwa 2026-06-13 q-bio.GN q-bio.GN https://arxiv.org/abs/2606.15357 False False 2606.15397 On the Equivalence of Instantaneous and Mechanistic Reproduction Numbers 2026-06-13 q-bio.PE;stat.AP q-bio.PE https://arxiv.org/abs/2606.15397 False False 2606.15422 Pepti-Agent: An AI Agent for Peptide Design and Optimization 2026-06-13 cs.CL;q-bio.BM q-bio.BM https://arxiv.org/abs/2606.15422 False False 2606.15496 How recombination rates affect escape from low-fitness states 2026-06-13 q-bio.PE q-bio.PE https://arxiv.org/abs/2606.15496 False False 2606.15499 Assembly Spaces: Formal Definitions and Fast Methods for Approximating Assembly Indices 2026-06-13 cs.FL;math.MP;physics.math-ph;q-bio.BM q-bio.BM https://arxiv.org/abs/2606.15499 False False 2606.15192 OpTI-Mouse: Optimization for Targeted Temporal Interference Stimulation in the Mouse Brain 2026-06-13 q-bio.NC q-bio.NC https://arxiv.org/abs/2606.15192 False False 2606.15348 Intrinsic Computational Functionalism and Simulated Consciousness 2026-06-13 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2606.15348 False False 2606.15357 Fast genomic read alignment with minibwa 2026-06-13 q-bio.GN q-bio.GN https://arxiv.org/abs/2606.15357 False False 2606.15397 On the Equivalence of Instantaneous and Mechanistic Reproduction Numbers 2026-06-13 q-bio.PE;stat.AP q-bio.PE https://arxiv.org/abs/2606.15397 False False 2606.15422 Pepti-Agent: An AI Agent for Peptide Design and Optimization 2026-06-13 cs.CL;q-bio.BM q-bio.BM https://arxiv.org/abs/2606.15422 False False 2606.15496 How recombination rates affect escape from low-fitness states 2026-06-13 q-bio.PE q-bio.PE https://arxiv.org/abs/2606.15496 False False 2606.15499 Assembly Spaces: Formal Definitions and Fast Methods for Approximating Assembly Indices 2026-06-13 cs.FL;math.MP;physics.math-ph;q-bio.BM q-bio.BM https://arxiv.org/abs/2606.15499 False False 2607.08781 Reward Transport: Property Control in Flow Matching via Noise-Space Alignment 2026-06-13 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.08781 False False 2607.08781 Reward Transport: Property Control in Flow Matching via Noise-Space Alignment 2026-06-13 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.08781 False False 2606.14111 Temperature transferable Machine Learned Coarse Grained model for proteins 2026-06-12 physics.bio-ph;q-bio.BM;stat.ML q-bio.BM https://arxiv.org/abs/2606.14111 False False 2606.14159 Curvature-Guided Geometric Representation for Protein-Ligand Binding Affinity Prediction 2026-06-12 cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2606.14159 False False 2606.14217 Curvature-Informed Potential Energy Surface for Protein-Ligand Binding Affinity Prediction 2026-06-12 cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2606.14217 False False 2606.14449 Measurement-limited learning of conformational heterogeneity in cryo-electron microscopy 2026-06-12 physics.bio-ph;q-bio.BM;q-bio.QM q-bio.BM https://arxiv.org/abs/2606.14449 False False 2606.14464 Note on the Maximum Number of Trees Displayed by a Tree-Child Network 2026-06-12 cs.DM;math.CO;q-bio.PE q-bio.PE https://arxiv.org/abs/2606.14464 False False 2606.14603 Towards In Silico Cancer Therapy Design: An Agent-Based Approach for GPU-Accelerated Molecular Pathway Simulation 2026-06-12 cs.CE;q-bio.MN;q-bio.QM q-bio.MN https://arxiv.org/abs/2606.14603 False False 2606.14614 Decoding Semantic Categories from Picture-Naming EEG 2026-06-12 eess.SP;q-bio.NC q-bio.NC https://arxiv.org/abs/2606.14614 False False 2606.14649 Prospective Coding and Path Integration Emerge as Equilibrium Solutions of Self-Organizing Neural Networks with Firing-Rate Adaptation 2026-06-12 physics.AO;physics.dis-nn;q-bio.NC q-bio.NC https://arxiv.org/abs/2606.14649 False False 2606.14692 Implications of hierarchical Markov models of behavior: on irreversibility, predictability, and dimensionality 2026-06-12 physics.bio-ph;q-bio.NC;q-bio.QM q-bio.NC https://arxiv.org/abs/2606.14692 False False 2606.14111 Temperature transferable Machine Learned Coarse Grained model for proteins 2026-06-12 physics.bio-ph;q-bio.BM;stat.ML q-bio.BM https://arxiv.org/abs/2606.14111 False False 2606.14159 Curvature-Guided Geometric Representation for Protein-Ligand Binding Affinity Prediction 2026-06-12 cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2606.14159 False False 2606.14217 Curvature-Informed Potential Energy Surface for Protein-Ligand Binding Affinity Prediction 2026-06-12 cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2606.14217 False False 2606.14449 Measurement-limited learning of conformational heterogeneity in cryo-electron microscopy 2026-06-12 physics.bio-ph;q-bio.BM;q-bio.QM q-bio.BM https://arxiv.org/abs/2606.14449 False False 2606.14464 Note on the Maximum Number of Trees Displayed by a Tree-Child Network 2026-06-12 cs.DM;math.CO;q-bio.PE q-bio.PE https://arxiv.org/abs/2606.14464 False False 2606.14603 Towards In Silico Cancer Therapy Design: An Agent-Based Approach for GPU-Accelerated Molecular Pathway Simulation 2026-06-12 cs.CE;q-bio.MN;q-bio.QM q-bio.MN https://arxiv.org/abs/2606.14603 False False 2606.14614 Decoding Semantic Categories from Picture-Naming EEG 2026-06-12 eess.SP;q-bio.NC q-bio.NC https://arxiv.org/abs/2606.14614 False False 2606.14649 Prospective Coding and Path Integration Emerge as Equilibrium Solutions of Self-Organizing Neural Networks with Firing-Rate Adaptation 2026-06-12 physics.AO;physics.dis-nn;q-bio.NC q-bio.NC https://arxiv.org/abs/2606.14649 False False 2606.14692 Implications of hierarchical Markov models of behavior: on irreversibility, predictability, and dimensionality 2026-06-12 physics.bio-ph;q-bio.NC;q-bio.QM q-bio.NC https://arxiv.org/abs/2606.14692 False False 2606.14823 Human genetic evidence is associated with drug approval across therapeutic areas: an observational analysis of 26,278 target-disease pairs with temporal validation and feature ablation 2026-06-12 cs.AI;cs.CL;q-bio.GN q-bio.GN https://arxiv.org/abs/2606.14823 False False 2606.14835 The Essential Role Of Ribosomal Feedback In Bacterial Cell Growth And Metabolic Load -- A Systems Biology Approach For Unveiling Shared Resources Regulation Within Synthetic Genetic Circuits 2026-06-12 q-bio.QM q-bio.QM https://arxiv.org/abs/2606.14835 False False 2606.14925 Boolean models coarsely sample continuous dynamics of regulatory networks 2026-06-12 math.DS;q-bio.MN q-bio.MN https://arxiv.org/abs/2606.14925 False False 2606.14975 Harnessing cortical geometry, wiring, and function as inductive biases for recurrent neural networks 2026-06-12 cs.AI;cs.LG;cs.NE;physics.data-an;q-bio.NC q-bio.NC https://arxiv.org/abs/2606.14975 False False 2606.15012 A Kuramoto-von Mises Time Series Model for Probabilistic Modeling of Coupled Oscillators 2026-06-12 q-bio.QM;stat.ME q-bio.QM https://arxiv.org/abs/2606.15012 False False 2606.14823 Human genetic evidence is associated with drug approval across therapeutic areas: an observational analysis of 26,278 target-disease pairs with temporal validation and feature ablation 2026-06-12 cs.AI;cs.CL;q-bio.GN q-bio.GN https://arxiv.org/abs/2606.14823 False False 2606.14835 The Essential Role Of Ribosomal Feedback In Bacterial Cell Growth And Metabolic Load -- A Systems Biology Approach For Unveiling Shared Resources Regulation Within Synthetic Genetic Circuits 2026-06-12 q-bio.QM q-bio.QM https://arxiv.org/abs/2606.14835 False False 2606.14925 Boolean models coarsely sample continuous dynamics of regulatory networks 2026-06-12 math.DS;q-bio.MN q-bio.MN https://arxiv.org/abs/2606.14925 False False 2606.14975 Harnessing cortical geometry, wiring, and function as inductive biases for recurrent neural networks 2026-06-12 cs.AI;cs.LG;cs.NE;physics.data-an;q-bio.NC q-bio.NC https://arxiv.org/abs/2606.14975 False False 2606.15012 A Kuramoto-von Mises Time Series Model for Probabilistic Modeling of Coupled Oscillators 2026-06-12 q-bio.QM;stat.ME q-bio.QM https://arxiv.org/abs/2606.15012 False False 2606.14510 PepALD: Macrocyclic Peptide Generation via Autoregressive Latent Diffusion 2026-06-12 cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2606.14510 False False 2606.14510 PepALD: Macrocyclic Peptide Generation via Autoregressive Latent Diffusion 2026-06-12 cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2606.14510 False False 2606.14649 Prospective Coding and Path Integration Emerge as Equilibrium Solutions of Self-Organizing Neural Networks with Firing-Rate Adaptation 2026-06-12 physics.AO;physics.dis-nn;q-bio.NC q-bio.NC https://arxiv.org/abs/2606.14649 False False 2606.14649 Prospective Coding and Path Integration Emerge as Equilibrium Solutions of Self-Organizing Neural Networks with Firing-Rate Adaptation 2026-06-12 physics.AO;physics.dis-nn;q-bio.NC q-bio.NC https://arxiv.org/abs/2606.14649 False False 2606.12772 EasyNano: rapid epitope-targeted nanobody CDR design via differentiable distogram optimization with ESMFold2 2026-06-11 q-bio.QM q-bio.QM https://arxiv.org/abs/2606.12772 False False 2606.12836 Interpretable model-free inference of parametric variation across time-series data through large-scale feature extraction 2026-06-11 physics.data-an;q-bio.QM;stat.ME q-bio.QM https://arxiv.org/abs/2606.12836 False False 2606.12838 OCOO-T : A Simple and Scalable Virtual Cell Model for Transcriptional Perturbation Response Prediction 2026-06-11 cs.AI;cs.LG;q-bio.GN;q-bio.QM q-bio.GN https://arxiv.org/abs/2606.12838 False False 2606.12854 Small LLMs for Biomedical Claim Verification: Cost-Effective Fine-Tuning, Structural Dataset Shortcuts, and Cross-Domain Generalization 2026-06-11 cs.CL;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.12854 False False 2606.13017 Deep Sleep Classification via EEG Signal Criticality: A Passive BCI Approach for Sleep-Improvement Neurofeedback 2026-06-11 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2606.13017 False False 2606.13047 Irregular curvature at focal adhesions modulates Piezo1 activity and low frequency ultrasound induced apoptosis in cancer cells 2026-06-11 q-bio.BM;q-bio.CB q-bio.BM https://arxiv.org/abs/2606.13047 False False 2606.13132 Including the Cost of Irreducible Uncertainty in the Policy Compression Framework 2026-06-11 q-bio.NC q-bio.NC https://arxiv.org/abs/2606.13132 False False 2606.13260 Extracting Governing Equations from Latent Dynamics via Multi-View Contrastive Learning 2026-06-11 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2606.13260 False False 2606.13386 Mathematical Modeling of HDV RNA, HBV DNA, and HBsAg Dynamics during Lonafarnib-Based Therapy: Insights from the LOWR HDV-1 Study 2026-06-11 physics.soc-ph;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.13386 False False 2606.13475 A likelihood-based framework for simultaneously learning both noise and growth dynamics using biologically-informed neural networks 2026-06-11 q-bio.PE;q-bio.QM q-bio.PE https://arxiv.org/abs/2606.13475 False False 2606.13556 Is It You or Your Environment? A Bayesian Inference Framework for Genomically-Anchored Personalized Physiological Interpretation 2026-06-11 cs.AI;cs.HC;q-bio.BM;q-bio.GN;q-bio.MN q-bio.BM https://arxiv.org/abs/2606.13556 False False 2606.13620 Balancing label resolution and computational cost in dynamical models of lipid metabolism 2026-06-11 q-bio.QM q-bio.QM https://arxiv.org/abs/2606.13620 False False 2606.13678 A model of local and global reciprocity 2026-06-11 physics.soc-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2606.13678 False False 2606.12772 EasyNano: rapid epitope-targeted nanobody CDR design via differentiable distogram optimization with ESMFold2 2026-06-11 q-bio.QM q-bio.QM https://arxiv.org/abs/2606.12772 False False 2606.12836 Interpretable model-free inference of parametric variation across time-series data through large-scale feature extraction 2026-06-11 physics.data-an;q-bio.QM;stat.ME q-bio.QM https://arxiv.org/abs/2606.12836 False False 2606.12838 OCOO-T : A Simple and Scalable Virtual Cell Model for Transcriptional Perturbation Response Prediction 2026-06-11 cs.AI;cs.LG;q-bio.GN;q-bio.QM q-bio.GN https://arxiv.org/abs/2606.12838 False False 2606.12854 Small LLMs for Biomedical Claim Verification: Cost-Effective Fine-Tuning, Structural Dataset Shortcuts, and Cross-Domain Generalization 2026-06-11 cs.CL;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.12854 False False 2606.13017 Deep Sleep Classification via EEG Signal Criticality: A Passive BCI Approach for Sleep-Improvement Neurofeedback 2026-06-11 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2606.13017 False False 2606.13047 Irregular curvature at focal adhesions modulates Piezo1 activity and low frequency ultrasound induced apoptosis in cancer cells 2026-06-11 q-bio.BM;q-bio.CB q-bio.BM https://arxiv.org/abs/2606.13047 False False 2606.13132 Including the Cost of Irreducible Uncertainty in the Policy Compression Framework 2026-06-11 q-bio.NC q-bio.NC https://arxiv.org/abs/2606.13132 False False 2606.13260 Extracting Governing Equations from Latent Dynamics via Multi-View Contrastive Learning 2026-06-11 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2606.13260 False False 2606.13386 Mathematical Modeling of HDV RNA, HBV DNA, and HBsAg Dynamics during Lonafarnib-Based Therapy: Insights from the LOWR HDV-1 Study 2026-06-11 physics.soc-ph;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.13386 False False 2606.13475 A likelihood-based framework for simultaneously learning both noise and growth dynamics using biologically-informed neural networks 2026-06-11 q-bio.PE;q-bio.QM q-bio.PE https://arxiv.org/abs/2606.13475 False False 2606.13556 Is It You or Your Environment? A Bayesian Inference Framework for Genomically-Anchored Personalized Physiological Interpretation 2026-06-11 cs.AI;cs.HC;q-bio.BM;q-bio.GN;q-bio.MN q-bio.BM https://arxiv.org/abs/2606.13556 False False 2606.13620 Balancing label resolution and computational cost in dynamical models of lipid metabolism 2026-06-11 q-bio.QM q-bio.QM https://arxiv.org/abs/2606.13620 False False 2606.13678 A model of local and global reciprocity 2026-06-11 physics.soc-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2606.13678 False False 2606.13556 Is It You or Your Environment? A Bayesian Inference Framework for Genomically-Anchored Personalized Physiological Interpretation 2026-06-11 cs.AI;cs.HC;q-bio.BM;q-bio.GN;q-bio.MN q-bio.BM https://arxiv.org/abs/2606.13556 False False 2606.13801 Neural Variability Enhances Artificial Network Robustness 2026-06-11 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2606.13801 False False 2606.13890 Mean First Passage Time for Persistent Random Walks in Annular Search Domains 2026-06-11 physics.stat-mech;q-bio.CB q-bio.CB https://arxiv.org/abs/2606.13890 False False 2606.13921 An analytical framework to unify ecological and engineering resilience near critical transitions 2026-06-11 q-bio.PE q-bio.PE https://arxiv.org/abs/2606.13921 0.7561 0.8174 True 6 7.2 False 2606.13556 Is It You or Your Environment? A Bayesian Inference Framework for Genomically-Anchored Personalized Physiological Interpretation 2026-06-11 cs.AI;cs.HC;q-bio.BM;q-bio.GN;q-bio.MN q-bio.BM https://arxiv.org/abs/2606.13556 False False 2606.13801 Neural Variability Enhances Artificial Network Robustness 2026-06-11 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2606.13801 False False 2606.13890 Mean First Passage Time for Persistent Random Walks in Annular Search Domains 2026-06-11 physics.stat-mech;q-bio.CB q-bio.CB https://arxiv.org/abs/2606.13890 False False 2606.13921 An analytical framework to unify ecological and engineering resilience near critical transitions 2026-06-11 q-bio.PE q-bio.PE https://arxiv.org/abs/2606.13921 0.7561 0.8174 True 6 7.2 False 2606.13678 A model of local and global reciprocity 2026-06-11 physics.soc-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2606.13678 False False 2606.14797 Hierarchical Autocatalytic Systems as a Bridge between Maximum Entropy Production and Bayesian Posterior Contraction: A Numerical Study with Stochastic-Thermodynamic Bounds 2026-06-11 physics.bio-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2606.14797 False False 2606.13678 A model of local and global reciprocity 2026-06-11 physics.soc-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2606.13678 False False 2606.14797 Hierarchical Autocatalytic Systems as a Bridge between Maximum Entropy Production and Bayesian Posterior Contraction: A Numerical Study with Stochastic-Thermodynamic Bounds 2026-06-11 physics.bio-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2606.14797 False False 2606.13132 Including the Cost of Irreducible Uncertainty in the Policy Compression Framework 2026-06-11 q-bio.NC q-bio.NC https://arxiv.org/abs/2606.13132 False False 2606.13132 Including the Cost of Irreducible Uncertainty in the Policy Compression Framework 2026-06-11 q-bio.NC q-bio.NC https://arxiv.org/abs/2606.13132 False False 2606.11555 End-to-End Machine Learning for Depressive State Classification via EEG and fNIRS 2026-06-10 cs.AI;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2606.11555 False False 2606.11598 Large language models selectively converge with human-shared neural semantic representations 2026-06-10 q-bio.NC q-bio.NC https://arxiv.org/abs/2606.11598 False False 2606.11646 Tree-Structured Orthonormal Decomposition of the Aitchison Simplex 2026-06-10 cs.LG;q-bio.QM;stat.ML q-bio.QM https://arxiv.org/abs/2606.11646 False False 2606.11651 DeepRHP: A Hybrid Variational Autoencoder for Designing Random Heteropolymers as Protein Mimics 2026-06-10 cs.LG;q-bio.QM;stat.AP q-bio.QM https://arxiv.org/abs/2606.11651 False False 2606.11775 Magnitude-Based Features for Multispecies Spatial Data 2026-06-10 math.MG;q-bio.QM;stat.ML q-bio.QM https://arxiv.org/abs/2606.11775 False False 2606.11833 Flow Matching with In-Context Priors for Out-of-Distribution Brain Dynamics 2026-06-10 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2606.11833 False False 2606.11868 MemNovo: Look Back at the Spectrum for Balanced De Novo Peptide Sequencing from Mass Spectrometry 2026-06-10 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.11868 False False 2606.11876 Seeing Below the Limit of Detection: A Censored-Poisson Bayesian Latent-Growth Change-Point Detector (the Span Detector) for Serial ctDNA in HR+/HER2- Metastatic Breast Cancer 2026-06-10 cs.LG;q-bio.QM;stat.ME q-bio.QM https://arxiv.org/abs/2606.11876 False False 2606.11893 Beyond representational alignment with brain-guided language models for robust reasoning 2026-06-10 cs.AI;cs.CL;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2606.11893 False False 2606.12209 Interpretable enzyme function prediction via sparse autoencoder features of ESMC across the microbial protein universe 2026-06-10 q-bio.QM q-bio.QM https://arxiv.org/abs/2606.12209 False False 2606.12219 m6A-FORM: A Foundation Model for Decoding N6-methyladenosine Biology 2026-06-10 q-bio.GN;q-bio.MN q-bio.GN https://arxiv.org/abs/2606.12219 False False 2606.12564 SCAR dynamics of adolescent substance use: peer influence, dropout, and bifurcation structure in a school-based model 2026-06-10 math.DS;physics.soc-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2606.12564 False False 2606.12573 Implementation of Linear Regression and Linear Interpolation using Reaction Networks 2026-06-10 math.DS;q-bio.MN q-bio.MN https://arxiv.org/abs/2606.12573 False False 2606.12597 A structural causal framework for interventions on evolutionary accumulation models 2026-06-10 q-bio.PE;q-bio.QM q-bio.PE https://arxiv.org/abs/2606.12597 False False 2606.12600 Multifractal human signals at the edge of life reveal a heart-brain anti-correlation 2026-06-10 physics.AO;q-bio.NC q-bio.NC https://arxiv.org/abs/2606.12600 False False 2606.12609 Viral Proteins Reveal Geometry of Protein Language Models 2026-06-10 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.12609 False False 2606.12639 The Metric Picks the Winner: Evaluation Choice Flips Model Rankings for Drug-Response Prediction in Unseen Chemistry 2026-06-10 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.12639 False False 2606.12651 Physics-Aware Auxiliary Losses Improve Out-of-Distribution Generalization of a GNN Synthesizability Filter 2026-06-10 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.12651 False False 2606.12658 Physics-Informed Neural Networks for Chemotherapy Pharmacokinetics: Benchmarking the Clinical Estimator and Exposing Parameter Identifiability 2026-06-10 cs.LG;q-bio.QM;stat.ML q-bio.QM https://arxiv.org/abs/2606.12658 False False 2606.12684 Phase model analysis of the effect of M-current on neural synchrony in hippocampal networks 2026-06-10 math.DS;q-bio.NC q-bio.NC https://arxiv.org/abs/2606.12684 False False 2606.12712 Predictions for and lack of maximal information transmission in the neuromuscular junction 2026-06-10 q-bio.MN q-bio.MN https://arxiv.org/abs/2606.12712 False False 2606.12564 SCAR dynamics of adolescent substance use: peer influence, dropout, and bifurcation structure in a school-based model 2026-06-10 math.DS;physics.soc-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2606.12564 False False 2606.12573 Implementation of Linear Regression and Linear Interpolation using Reaction Networks 2026-06-10 math.DS;q-bio.MN q-bio.MN https://arxiv.org/abs/2606.12573 False False 2606.12597 A structural causal framework for interventions on evolutionary accumulation models 2026-06-10 q-bio.PE;q-bio.QM q-bio.PE https://arxiv.org/abs/2606.12597 False False 2606.12600 Multifractal human signals at the edge of life reveal a heart-brain anti-correlation 2026-06-10 physics.AO;q-bio.NC q-bio.NC https://arxiv.org/abs/2606.12600 False False 2606.12609 Viral Proteins Reveal Geometry of Protein Language Models 2026-06-10 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.12609 False False 2606.12639 The Metric Picks the Winner: Evaluation Choice Flips Model Rankings for Drug-Response Prediction in Unseen Chemistry 2026-06-10 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.12639 False False 2606.12658 Physics-Informed Neural Networks for Chemotherapy Pharmacokinetics: Benchmarking the Clinical Estimator and Exposing Parameter Identifiability 2026-06-10 cs.LG;q-bio.QM;stat.ML q-bio.QM https://arxiv.org/abs/2606.12658 False False 2606.12684 Phase model analysis of the effect of M-current on neural synchrony in hippocampal networks 2026-06-10 math.DS;q-bio.NC q-bio.NC https://arxiv.org/abs/2606.12684 False False 2606.12712 Predictions for and lack of maximal information transmission in the neuromuscular junction 2026-06-10 q-bio.MN q-bio.MN https://arxiv.org/abs/2606.12712 False False 2606.12651 Physics-Aware Auxiliary Losses Improve Out-of-Distribution Generalization of a GNN Synthesizability Filter 2026-06-10 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.12651 False False 2606.12651 Physics-Aware Auxiliary Losses Improve Out-of-Distribution Generalization of a GNN Synthesizability Filter 2026-06-10 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.12651 False False 2606.13713 CisTransCell: Single-Cell Perturbation Prediction via Gene Function, Regulatory Control, and Cellular Context 2026-06-10 cs.AI;q-bio.GN q-bio.GN https://arxiv.org/abs/2606.13713 False False 2606.13713 CisTransCell: Single-Cell Perturbation Prediction via Gene Function, Regulatory Control, and Cellular Context 2026-06-10 cs.AI;q-bio.GN q-bio.GN https://arxiv.org/abs/2606.13713 False False 2606.12219 m6A-FORM: An m6A-focused Foundation Model for Decoding m6A Regulatory Function 2026-06-10 q-bio.GN;q-bio.MN q-bio.GN https://arxiv.org/abs/2606.12219 False False 2606.12219 m6A-FORM: An m6A-focused Foundation Model for Decoding m6A Regulatory Function 2026-06-10 q-bio.GN;q-bio.MN q-bio.GN https://arxiv.org/abs/2606.12219 False False 2606.12597 A structural causal framework for interventions on evolutionary accumulation models 2026-06-10 q-bio.PE;q-bio.QM q-bio.PE https://arxiv.org/abs/2606.12597 False False 2606.12597 A structural causal framework for interventions on evolutionary accumulation models 2026-06-10 q-bio.PE;q-bio.QM q-bio.PE https://arxiv.org/abs/2606.12597 False False 2606.11555 End-to-End Machine Learning for Depressive State Classification via EEG and fNIRS 2026-06-10 cs.AI;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2606.11555 False False 2606.11555 End-to-End Machine Learning for Depressive State Classification via EEG and fNIRS 2026-06-10 cs.AI;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2606.11555 False False 2606.11868 MemNovo: Look Back at the Spectrum for Balanced De Novo Peptide Sequencing from Mass Spectrometry 2026-06-10 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.11868 False False 2606.11868 MemNovo: Look Back at the Spectrum for Balanced De Novo Peptide Sequencing from Mass Spectrometry 2026-06-10 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.11868 False False 2606.10355 Mean-field models for morphogenetic processes in physiological contexts 2026-06-09 physics.PS;q-bio.CB q-bio.CB https://arxiv.org/abs/2606.10355 False False 2606.10407 Time-frequency localization of bird calls in dense soundscapes 2026-06-09 cs.CV;cs.SD;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.10407 False False 2606.10410 A Comprehensive Inference-Time Augmentation Framework in Physiological Signals: Application to PPG-Based AF Detection 2026-06-09 cs.LG;eess.SP;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.10410 False False 2606.10543 Flexible Flows for Biological Sequence Design 2026-06-09 cs.AI;cs.ET;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.10543 False False 2606.10605 Modeling pest dynamics in trap cropping to improve yield: the effects of attraction, retention, and land allocation 2026-06-09 q-bio.PE q-bio.PE https://arxiv.org/abs/2606.10605 False False 2606.10809 Chaos and stability in the marine trophic network: the importance of interactions over complexity 2026-06-09 q-bio.PE q-bio.PE https://arxiv.org/abs/2606.10809 False False 2606.10873 Spatial Model Selection and Uncertainty Quantification: Comparing Continuous and Discrete Wound Healing Models 2026-06-09 q-bio.QM q-bio.QM https://arxiv.org/abs/2606.10873 False False 2606.10878 Spontaneous polarization for protrusion-driven cell crawling 2026-06-09 physics.bio-ph;q-bio.CB q-bio.CB https://arxiv.org/abs/2606.10878 False False 2606.10889 Sleep EEG Signal Criticality as a Non-Invasive Predictor of Cognitive Decline in Dementia 2026-06-09 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2606.10889 False False 2606.10891 Bilinear gating of motor primitives: a principle linking dendritic computation to rapid goal-directed adaptation 2026-06-09 q-bio.NC q-bio.NC https://arxiv.org/abs/2606.10891 False False 2606.10955 A kinetic model of shear-induced rupture of short dsDNA 2026-06-09 physics.soft;q-bio.BM;q-bio.QM q-bio.BM https://arxiv.org/abs/2606.10955 False False 2606.11057 Flexible Kernels for Protein Property Prediction 2026-06-09 cs.LG;q-bio.BM;stat.ML q-bio.BM https://arxiv.org/abs/2606.11057 False False 2606.11066 GRAFT: Gain-Recalibrated Adapters for Transformer-Based Neural Population Activity Modeling 2026-06-09 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2606.11066 False False 2606.11091 QUIET: Quantifying Underutilized Influential Edges for Targeted Synchronization 2026-06-09 cs.SY;eess.SY;q-bio.NC q-bio.NC https://arxiv.org/abs/2606.11091 False False 2606.11144 OncoTraj: a public benchmark for longitudinal resistance prediction in EGFR-mutant non-small-cell lung cancer on osimertinib 2026-06-09 cs.LG;q-bio.GN;q-bio.QM;stat.AP q-bio.GN https://arxiv.org/abs/2606.11144 False False 2606.11259 Stabilizing Role of Uninformed Participants in Collective Decision Making 2026-06-09 cs.SI;math.DS;physics.AO;physics.stat-mech;q-bio.PE q-bio.PE https://arxiv.org/abs/2606.11259 False False 2606.11264 OmniBioTwin: A System-of-Twinned-Systems Framework for Health Digital Twins 2026-06-09 cs.AI;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.11264 False False 2606.11276 A mathematical framework for centromere-aware evaluation of human genome assemblies 2026-06-09 q-bio.GN q-bio.GN https://arxiv.org/abs/2606.11276 False False 2606.11382 GLACIER: A Multimodal Student-Teacher Foundation Model for Molecular Property Prediction 2026-06-09 cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2606.11382 False False 2606.11415 Spatially Masked Regression Reveals Local and Distributed Predictability in Electrophysiological Recordings 2026-06-09 cs.LG;physics.data-an;q-bio.NC;q-bio.QM q-bio.NC https://arxiv.org/abs/2606.11415 False False 2606.11426 Sharpness characterizes Hill functions 2026-06-09 math.CA;math.OC;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.11426 False False 2606.11486 Elucidating the Size of Chemical Space with Assembly Theory 2026-06-09 physics.chem-ph;q-bio.MN q-bio.MN https://arxiv.org/abs/2606.11486 False False 2606.11500 FlexiBrain: Resolution-Agnostic Voxel-Level Encoding for Native fMRI 2026-06-09 cs.CE;cs.IT;cs.LG;eess.IV;math.IT;q-bio.NC q-bio.NC https://arxiv.org/abs/2606.11500 False False 2606.11508 Probabilistic Contrastive Pretraining for Multi-task ADME Property Prediction 2026-06-09 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.11508 False False 2606.11510 Continuous biome representations from Earth observation embeddings 2026-06-09 q-bio.PE;q-bio.QM;stat.ML q-bio.PE https://arxiv.org/abs/2606.11510 False False 2606.12465 A systematic review of COVID-19 epidemic models with endogenous human behaviour. What's next? 2026-06-09 physics.soc-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2606.12465 False False 2606.12465 A systematic review of COVID-19 epidemic models with endogenous human behaviour. What's next? 2026-06-09 physics.soc-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2606.12465 False False 2606.10410 A Comprehensive Inference-Time Augmentation Framework in Physiological Signals: Application to PPG-Based AF Detection 2026-06-09 cs.LG;eess.SP;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.10410 False False 2606.10410 A Comprehensive Inference-Time Augmentation Framework in Physiological Signals: Application to PPG-Based AF Detection 2026-06-09 cs.LG;eess.SP;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.10410 False False 2606.10889 Sleep EEG Signal Criticality as a Non-Invasive Predictor of Cognitive Decline in Dementia 2026-06-09 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2606.10889 False False 2606.10889 Sleep EEG Signal Criticality as a Non-Invasive Predictor of Cognitive Decline in Dementia 2026-06-09 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2606.10889 False False 2606.08897 A multi-agent system for spine MRI report generation from multi-sequence imaging 2026-06-08 cs.AI;cs.CV;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.08897 False False 2606.08973 A systematic investigation of molecular encoding methods for drug property predictions across neural network and Transformer encoder-based model 2026-06-08 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.08973 False False 2606.09040 Natural Selection in the Wake of Catastrophe 2026-06-08 physics.bio-ph;physics.stat-mech;q-bio.PE q-bio.PE https://arxiv.org/abs/2606.09040 False False 2606.09494 Percolation and clustering in ecological communities: A dynamical theory 2026-06-08 physics.dis-nn;q-bio.PE q-bio.PE https://arxiv.org/abs/2606.09494 False False 2606.09558 Integrating gene regulatory priors into Transformer attention with scTransformer for interpretable scRNA-seq analysis 2026-06-08 cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2606.09558 False False 2606.09672 Correlation Is Not Enough: Embedding Human Metadata for Individual Causal Discovery 2026-06-08 cs.AI;cs.CL;cs.LG;cs.PF;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.09672 False False 2606.09770 Discovering Functionally Selective Brain Regions with a Deep Topographic Multimodal Model 2026-06-08 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2606.09770 False False 2606.09952 Adjusted trajectory of medication exposure taking into account the periodicity of dispensations and the number of dispensed packs and comparative analysis on EFEMERIS database 2026-06-08 physics.med-ph;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.09952 False False 2606.10080 VFUSE: Virulent Feature Understanding with Sparse autoEncoders 2026-06-08 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.10080 False False 2606.10107 Maximum Matching Accuracy: An Instance Segmentation Evaluation Metric Utilizing Globally Optimal Matching 2026-06-08 cs.CV;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.10107 False False 2606.10222 Multifractal Signatures of Ageing and Dementia Development: A Multifractal Space-Filling Curve Analysis 2026-06-08 physics.dis-nn;q-bio.NC;q-bio.QM q-bio.NC https://arxiv.org/abs/2606.10222 False False 2606.10238 Hyperbolic Neural Population Geometry Benefits Computation 2026-06-08 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2606.10238 False False 2606.09770 Discovering Functionally Selective Brain Regions with a Deep Topographic Multimodal Model 2026-06-08 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2606.09770 False False 2606.09770 Discovering Functionally Selective Brain Regions with a Deep Topographic Multimodal Model 2026-06-08 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2606.09770 False False 2606.08391 Cruise Ship-Associated Andes Virus Cluster aboard MV Hondius, 2026: A Stochastic Scenario Analysis 2026-06-07 q-bio.PE;q-bio.QM q-bio.PE https://arxiv.org/abs/2606.08391 False False 2606.08409 Matrix representations and distance metrics for unlabeled ranked phylogenetic networks 2026-06-07 q-bio.PE;stat.ME q-bio.PE https://arxiv.org/abs/2606.08409 False False 2606.08475 Parameter uncertainty in dynamical models: a practical identifiability index 2026-06-07 q-bio.QM;stat.ME q-bio.QM https://arxiv.org/abs/2606.08475 False False 2606.08647 Protein Dynamics Beyond Structure Prediction 2026-06-07 physics.mes-hall;physics.soft;q-bio.BM q-bio.BM https://arxiv.org/abs/2606.08647 0.7404 0.8121 True 5 5.45 False 2606.08720 This is how the Neocortex Learns 2026-06-07 q-bio.NC q-bio.NC https://arxiv.org/abs/2606.08720 False False 2606.08805 Predictable Mean-Field Chaos in Random Recurrent Networks 2026-06-07 physics.dis-nn;q-bio.NC q-bio.NC https://arxiv.org/abs/2606.08805 False False 2606.08825 When Three-Dimensional Conformer Ensembles Improve Molecular Property Prediction Beyond Two-Dimensional Fingerprints: A Systematic Study 2026-06-07 physics.chem-ph;q-bio.MN q-bio.MN https://arxiv.org/abs/2606.08825 False False 2606.08493 Querying Counterfactuals on Tissue Graphs with Supervised Disentanglement 2026-06-07 cs.LG;q-bio.GN;stat.ML q-bio.GN https://arxiv.org/abs/2606.08493 False False 2606.07949 Feasibility to detect rapid change and disappearance of seagrass: Lessons from nearly 80 years of vegetation change in the Ako, Seto Inland Sea, Japan 2026-06-06 cs.CV;eess.IV;q-bio.PE q-bio.PE https://arxiv.org/abs/2606.07949 False False 2606.08138 DNA Replication under Thermal, Chemical, and Genotoxic Stress 2026-06-06 physics.app-ph;physics.bio-ph;q-bio.SC q-bio.SC https://arxiv.org/abs/2606.08138 False False 2606.08147 Biological Reasoning-Informed Regression for Interpretable Regulatory DNA Activity Prediction 2026-06-06 cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2606.08147 False False 2606.08191 Frequency-Domain Latent Attention Gating for Cross-Domain Token Aggregation 2026-06-06 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.08191 False False 2606.08202 Vector Space of Cycles 2026-06-06 cs.LG;physics.data-an;q-bio.NC;stat.ML q-bio.NC https://arxiv.org/abs/2606.08202 False False 2606.08366 MetaboliSim: a Python implementation of the Mader model for dynamic and steady-state simulation of muscular energy metabolism 2026-06-06 cs.MS;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.08366 False False 2606.09906 An information-geometric framework for mapping maximum potential biodiversity 2026-06-06 q-bio.PE;stat.ME q-bio.PE https://arxiv.org/abs/2606.09906 False False 2606.12456 Network-Based Multi-Layer Model Using Machine Learning for Optimal Vaccine Prioritization in Heterogeneous Populations 2026-06-06 physics.soc-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2606.12456 False False 2606.12456 Network-Based Multi-Layer Model Using Machine Learning for Optimal Vaccine Prioritization in Heterogeneous Populations 2026-06-06 physics.soc-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2606.12456 False False 2606.08202 Vector Space of Cycles 2026-06-06 cs.LG;physics.data-an;q-bio.NC;stat.ML q-bio.NC https://arxiv.org/abs/2606.08202 False False 2606.08202 Vector Space of Cycles 2026-06-06 cs.LG;physics.data-an;q-bio.NC;stat.ML q-bio.NC https://arxiv.org/abs/2606.08202 False False 2606.06811 Dependencies and Dataflow in Seed-Filter-Extend Pipelines 2026-06-05 cs.PF;q-bio.GN q-bio.GN https://arxiv.org/abs/2606.06811 False False 2606.06834 The Dark Regulome: Disentangling Predictability from Regulation in Genomic Foundation Models 2026-06-05 cs.CL;q-bio.GN q-bio.GN https://arxiv.org/abs/2606.06834 False False 2606.06889 From Genomes to Algorithms: Neural Network Applications for Palimpsest Detection in Medieval Manuscripts 2026-06-05 q-bio.GN q-bio.GN https://arxiv.org/abs/2606.06889 False False 2606.07181 RETROSPECT: RETROsynthesis via Sequential Prediction, and Chemically Transformed-ranking 2026-06-05 cs.AI;cs.LG;q-bio.MN q-bio.MN https://arxiv.org/abs/2606.07181 False False 2606.07258 CaliPPer: quantifying, predicting and improving AI model performance for binding prediction 2026-06-05 cs.CE;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.07258 False False 2606.07301 Structure-guided taxonomic placement of divergent RNA viruses with ViraClass 2026-06-05 q-bio.QM q-bio.QM https://arxiv.org/abs/2606.07301 False False 2606.07336 Fixed point compositionality via low-rank gluing rules in inhibition-dominated threshold-linear networks 2026-06-05 q-bio.NC q-bio.NC https://arxiv.org/abs/2606.07336 False False 2606.07372 Nullclines, Subnullclines and the Asymptotic and Transient Attractors in Eco-Evolutionary Dynamics 2026-06-05 math.DS;q-bio.PE q-bio.PE https://arxiv.org/abs/2606.07372 False False 2606.07413 A Nine-Compartment Nonlinear Epidemic Model with Spline-Based Identification of Time-Varying Transmission and Vaccination Dynamics: Application to the COVID-19 Third Wave in Italy 2026-06-05 math.OC;q-bio.PE q-bio.PE https://arxiv.org/abs/2606.07413 False False 2606.06811 Dependencies and Dataflow in Seed-Filter-Extend Pipelines 2026-06-05 cs.PF;q-bio.GN q-bio.GN https://arxiv.org/abs/2606.06811 False False 2606.06834 The Dark Regulome: Disentangling Predictability from Regulation in Genomic Foundation Models 2026-06-05 cs.CL;q-bio.GN q-bio.GN https://arxiv.org/abs/2606.06834 False False 2606.06889 From Genomes to Algorithms: Neural Network Applications for Palimpsest Detection in Medieval Manuscripts 2026-06-05 q-bio.GN q-bio.GN https://arxiv.org/abs/2606.06889 False False 2606.07181 RETROSPECT: RETROsynthesis via Sequential Prediction, and Chemically Transformed-ranking 2026-06-05 cs.AI;cs.LG;q-bio.MN q-bio.MN https://arxiv.org/abs/2606.07181 False False 2606.06811 Dependencies and Dataflow in Seed-Filter-Extend Pipelines 2026-06-05 cs.PF;q-bio.GN q-bio.GN https://arxiv.org/abs/2606.06811 False False 2606.06834 The Dark Regulome: Disentangling Predictability from Regulation in Genomic Foundation Models 2026-06-05 cs.CL;q-bio.GN q-bio.GN https://arxiv.org/abs/2606.06834 False False 2606.06889 From Genomes to Algorithms: Neural Network Applications for Palimpsest Detection in Medieval Manuscripts 2026-06-05 q-bio.GN q-bio.GN https://arxiv.org/abs/2606.06889 False False 2606.07181 RETROSPECT: RETROsynthesis via Sequential Prediction, and Chemically Transformed-ranking 2026-06-05 cs.AI;cs.LG;q-bio.MN q-bio.MN https://arxiv.org/abs/2606.07181 False False 2606.07258 CaliPPer: quantifying, predicting and improving AI model performance for binding prediction 2026-06-05 cs.CE;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.07258 False False 2606.07301 Structure-guided taxonomic placement of divergent RNA viruses with ViraClass 2026-06-05 q-bio.QM q-bio.QM https://arxiv.org/abs/2606.07301 False False 2606.07336 Fixed point compositionality via low-rank gluing rules in inhibition-dominated threshold-linear networks 2026-06-05 q-bio.NC q-bio.NC https://arxiv.org/abs/2606.07336 False False 2606.07372 Nullclines, Subnullclines and the Asymptotic and Transient Attractors in Eco-Evolutionary Dynamics 2026-06-05 math.DS;q-bio.PE q-bio.PE https://arxiv.org/abs/2606.07372 False False 2606.07413 A Nine-Compartment Nonlinear Epidemic Model with Spline-Based Identification of Time-Varying Transmission and Vaccination Dynamics: Application to the COVID-19 Third Wave in Italy 2026-06-05 math.OC;q-bio.PE q-bio.PE https://arxiv.org/abs/2606.07413 False False 2606.07798 Reconstructing and forecasting disease trajectories of patients with Alzheimer's disease using routine data in resource-constrained settings 2026-06-05 cs.AI;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2606.07798 False False 2606.09898 TRAPS: Therapeutic Response Analysis via Pathway-informed Stratification 2026-06-05 cs.LG;cs.MA;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.09898 False False 2606.11245 Position: Hippocampal Explicit Memory Is the Cornerstone for AGI 2026-06-05 cs.AI;cs.NE;q-bio.NC q-bio.NC https://arxiv.org/abs/2606.11245 False False 2606.06834 The Dark Regulome: Disentangling Predictability from Regulation in Genomic Foundation Models 2026-06-05 cs.CL;q-bio.GN q-bio.GN https://arxiv.org/abs/2606.06834 False False 2606.06834 The Dark Regulome: Disentangling Predictability from Regulation in Genomic Foundation Models 2026-06-05 cs.CL;q-bio.GN q-bio.GN https://arxiv.org/abs/2606.06834 False False 2606.18277 Multi-network comparison of between-farm contacts for infectious disease surveillance in swine production 2026-06-05 physics.soc-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2606.18277 False False 2606.18277 Multi-network comparison of between-farm contacts for infectious disease surveillance in swine production 2026-06-05 physics.soc-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2606.18277 False False 2606.09898 TRAPS: Treatment-Assignment Prediction via Pathway-informed Stratification 2026-06-05 cs.LG;cs.MA;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.09898 False False 2606.05541 Methods for Inferring Interaction Potentials from Cross-Linking Mass Spectrometry Data 2026-06-04 physics.chem-ph;physics.soft;q-bio.BM q-bio.BM https://arxiv.org/abs/2606.05541 False False 2606.05870 Cross-scale spatially-aware generative modeling of transcriptomic programs underlying neurodegenerative brain organization 2026-06-04 cs.LG;q-bio.NC;q-bio.QM q-bio.NC https://arxiv.org/abs/2606.05870 False False 2606.05918 Federated SPARQL querying for genomic variant functional annotation 2026-06-04 q-bio.QM q-bio.QM https://arxiv.org/abs/2606.05918 False False 2606.05980 On the Promises and Limits of Multi-omics Integration for Deconvolution: The HADACA3 Benchmark 2026-06-04 q-bio.QM q-bio.QM https://arxiv.org/abs/2606.05980 False False 2606.06117 $p$-adic Bi-Filtrations for Topological Machine Learning on Genomic Sequences 2026-06-04 cs.LG;math.AT;q-bio.GN;q-bio.QM q-bio.GN https://arxiv.org/abs/2606.06117 False False 2606.06290 Early psychosis shows deviations in scaling behaviour within a critical regime 2026-06-04 physics.stat-mech;q-bio.NC q-bio.NC https://arxiv.org/abs/2606.06290 False False 2606.06345 Boosting Brain-to-Image Decoding with TRIBE v2 Data Augmentation 2026-06-04 cs.AI;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2606.06345 False False 2606.06424 Intrinsic Computational Functionalism: From Observer-Relative Maps to Observer-Independent Structures 2026-06-04 q-bio.NC q-bio.NC https://arxiv.org/abs/2606.06424 False False 2606.06434 rsx: A high-performance streaming toolkit for RAD-seq sex determination 2026-06-04 cs.PF;q-bio.GN q-bio.GN https://arxiv.org/abs/2606.06434 False False 2606.05541 Methods for Inferring Interaction Potentials from Cross-Linking Mass Spectrometry Data 2026-06-04 physics.chem-ph;physics.soft;q-bio.BM q-bio.BM https://arxiv.org/abs/2606.05541 False False 2606.05870 Cross-scale spatially-aware generative modeling of transcriptomic programs underlying neurodegenerative brain organization 2026-06-04 cs.LG;q-bio.NC;q-bio.QM q-bio.NC https://arxiv.org/abs/2606.05870 False False 2606.05918 Federated SPARQL querying for genomic variant functional annotation 2026-06-04 q-bio.QM q-bio.QM https://arxiv.org/abs/2606.05918 False False 2606.05980 On the Promises and Limits of Multi-omics Integration for Deconvolution: The HADACA3 Benchmark 2026-06-04 q-bio.QM q-bio.QM https://arxiv.org/abs/2606.05980 False False 2606.06117 $p$-adic Bi-Filtrations for Topological Machine Learning on Genomic Sequences 2026-06-04 cs.LG;math.AT;q-bio.GN;q-bio.QM q-bio.GN https://arxiv.org/abs/2606.06117 False False 2606.06290 Early psychosis shows deviations in scaling behaviour within a critical regime 2026-06-04 physics.stat-mech;q-bio.NC q-bio.NC https://arxiv.org/abs/2606.06290 False False 2606.06345 Boosting Brain-to-Image Decoding with TRIBE v2 Data Augmentation 2026-06-04 cs.AI;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2606.06345 False False 2606.06424 Intrinsic Computational Functionalism: From Observer-Relative Maps to Observer-Independent Structures 2026-06-04 q-bio.NC q-bio.NC https://arxiv.org/abs/2606.06424 False False 2606.06434 rsx: A high-performance streaming toolkit for RAD-seq sex determination 2026-06-04 cs.PF;q-bio.GN q-bio.GN https://arxiv.org/abs/2606.06434 False False 2606.06562 Iterative AI-guided optimisation of selective triple-drug combinations for breast cancer 2026-06-04 q-bio.QM q-bio.QM https://arxiv.org/abs/2606.06562 False False 2606.06647 The Identity Trap in EEG Foundation Models: A Diagnostic Audit 2026-06-04 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2606.06647 False False 2606.06717 ShallowBench: Benchmarking Generative Drug Design Models on Shallow-Pocket Targets 2026-06-04 cs.AI;cs.LG;q-bio.BM;q-bio.QM q-bio.BM https://arxiv.org/abs/2606.06717 False False 2606.06749 Deterministic access to global viral sequence data enables robust agentic scientific discovery 2026-06-04 q-bio.QM q-bio.QM https://arxiv.org/abs/2606.06749 False False 2606.06562 Iterative AI-guided optimisation of selective triple-drug combinations for breast cancer 2026-06-04 q-bio.QM q-bio.QM https://arxiv.org/abs/2606.06562 False False 2606.06647 The Identity Trap in EEG Foundation Models: A Diagnostic Audit 2026-06-04 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2606.06647 False False 2606.06717 ShallowBench: Benchmarking Generative Drug Design Models on Shallow-Pocket Targets 2026-06-04 cs.AI;cs.LG;q-bio.BM;q-bio.QM q-bio.BM https://arxiv.org/abs/2606.06717 False False 2606.06749 Deterministic access to global viral sequence data enables robust agentic scientific discovery 2026-06-04 q-bio.QM q-bio.QM https://arxiv.org/abs/2606.06749 False False 2606.06562 Iterative AI-guided optimisation of selective triple-drug combinations for breast cancer 2026-06-04 q-bio.QM q-bio.QM https://arxiv.org/abs/2606.06562 False False 2606.06647 The Identity Trap in EEG Foundation Models: A Diagnostic Audit 2026-06-04 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2606.06647 False False 2606.06717 ShallowBench: Benchmarking Generative Drug Design Models on Shallow-Pocket Targets 2026-06-04 cs.AI;cs.LG;q-bio.BM;q-bio.QM q-bio.BM https://arxiv.org/abs/2606.06717 False False 2606.06749 Deterministic access to global viral sequence data enables robust agentic scientific discovery 2026-06-04 q-bio.QM q-bio.QM https://arxiv.org/abs/2606.06749 False False 2606.07674 Simultaneous hyperkinetic movement disorders phenotyping: a cross-cohort pediatric transfer study using routine videos, markerless pose estimation and a tabular foundation model 2026-06-04 cs.CV;q-bio.NC q-bio.NC https://arxiv.org/abs/2606.07674 False False 2606.07676 Single-Cell Cross-Modal Transfer by Adversarial Fine-Tuning of Foundation Models 2026-06-04 cs.AI;q-bio.GN q-bio.GN https://arxiv.org/abs/2606.07676 False False 2606.06434 rsx: A high-performance streaming toolkit for RAD-seq sex determination 2026-06-04 cs.PF;q-bio.GN q-bio.GN https://arxiv.org/abs/2606.06434 False False 2606.06434 rsx: A high-performance streaming toolkit for RAD-seq sex determination 2026-06-04 cs.PF;q-bio.GN q-bio.GN https://arxiv.org/abs/2606.06434 False False 2606.04426 Discrete signaling mediates chaotic regularization in recurrent neural networks 2026-06-03 physics.dis-nn;q-bio.NC q-bio.NC https://arxiv.org/abs/2606.04426 False False 2606.04525 GENEB: Why Genomic Models Are Hard to Compare 2026-06-03 cs.CL;cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2606.04525 False False 2606.04551 Quasi-birth-and-death processes evolving within trees: Applications to comparative phylogenetics 2026-06-03 math.PR;q-bio.PE q-bio.PE https://arxiv.org/abs/2606.04551 False False 2606.04552 LDARNet: DNA Adaptive Representation Network with Learnable Tokenization for Genomic Modeling 2026-06-03 cs.CL;q-bio.GN q-bio.GN https://arxiv.org/abs/2606.04552 False False 2606.04566 AF_Cache: Efficient Pipeline for Running AlphaFold for High-Throughput Protein-Protein Interaction Prediction 2026-06-03 q-bio.BM q-bio.BM https://arxiv.org/abs/2606.04566 False False 2606.04994 New Benchmarking Shows Limited Generalization Power of TCR Antigenic Epitope Prediction Models 2026-06-03 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.04994 False False 2606.04426 Discrete signaling mediates chaotic regularization in recurrent neural networks 2026-06-03 physics.dis-nn;q-bio.NC q-bio.NC https://arxiv.org/abs/2606.04426 False False 2606.04525 GENEB: Why Genomic Models Are Hard to Compare 2026-06-03 cs.CL;cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2606.04525 False False 2606.04551 Quasi-birth-and-death processes evolving within trees: Applications to comparative phylogenetics 2026-06-03 math.PR;q-bio.PE q-bio.PE https://arxiv.org/abs/2606.04551 False False 2606.04552 LDARNet: DNA Adaptive Representation Network with Learnable Tokenization for Genomic Modeling 2026-06-03 cs.CL;q-bio.GN q-bio.GN https://arxiv.org/abs/2606.04552 False False 2606.04566 AF_Cache: Efficient Pipeline for Running AlphaFold for High-Throughput Protein-Protein Interaction Prediction 2026-06-03 q-bio.BM q-bio.BM https://arxiv.org/abs/2606.04566 False False 2606.04994 New Benchmarking Shows Limited Generalization Power of TCR Antigenic Epitope Prediction Models 2026-06-03 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.04994 False False 2606.05327 Multimarginal flow matching with optimal transport potentials 2026-06-03 cs.LG;q-bio.QM;stat.ML q-bio.QM https://arxiv.org/abs/2606.05327 False False 2606.05351 Tricriticality and chaos in a generalized Allee-logistic map 2026-06-03 physics.CD;physics.comp-ph;physics.soc-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2606.05351 False False 2606.05474 AlloGen: Conformation-Selective Binder Generation with Differential State Scoring 2026-06-03 cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2606.05474 False False 2606.05327 Multimarginal flow matching with optimal transport potentials 2026-06-03 cs.LG;q-bio.QM;stat.ML q-bio.QM https://arxiv.org/abs/2606.05327 False False 2606.05351 Tricriticality and chaos in a generalized Allee-logistic map 2026-06-03 physics.CD;physics.comp-ph;physics.soc-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2606.05351 False False 2606.05474 AlloGen: Conformation-Selective Binder Generation with Differential State Scoring 2026-06-03 cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2606.05474 False False 2606.04525 GENEB: Why Genomic Models Are Hard to Compare 2026-06-03 cs.CL;cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2606.04525 False False 2606.06537 DSU-Net: An Attention-Enhanced Dense Skip U-Net for Breast Lesion Segmentation in Mammographic Images 2026-06-03 cs.CV;eess.IV;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.06537 False False 2606.04525 GENEB: Why Genomic Models Are Hard to Compare 2026-06-03 cs.CL;cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2606.04525 False False 2606.06537 DSU-Net: An Attention-Enhanced Dense Skip U-Net for Breast Lesion Segmentation in Mammographic Images 2026-06-03 cs.CV;eess.IV;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.06537 False False 2606.06537 DSU-Net: An Attention-Enhanced Dense Skip U-Net for Breast Lesion Segmentation in Mammographic Images 2026-06-03 cs.CV;eess.IV;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.06537 False False 2606.04525 GENEB: Why Genomic Models Are Hard to Compare 2026-06-03 cs.CL;cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2606.04525 False False 2606.04525 GENEB: Why Genomic Models Are Hard to Compare 2026-06-03 cs.CL;cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2606.04525 False False 2606.14742 Do Large Language Models Have Emotions? 2026-06-03 cs.AI;cs.HC;q-bio.NC q-bio.NC https://arxiv.org/abs/2606.14742 False False 2606.14742 Do Large Language Models Have Emotions? 2026-06-03 cs.AI;cs.HC;q-bio.NC q-bio.NC https://arxiv.org/abs/2606.14742 False False 2606.17062 RadSEM: A Finding-by-Finding Metric for Clinical Consistency in Radiology Reports 2026-06-03 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.17062 False False 2606.17062 RadSEM: A Finding-by-Finding Metric for Clinical Consistency in Radiology Reports 2026-06-03 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.17062 False False 2606.04525 GENEB: Why Genomic Models Are Hard to Compare 2026-06-03 cs.CL;cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2606.04525 False False 2606.04552 LDARNet: DNA Adaptive Representation Network with Learnable Tokenization for Genomic Modeling 2026-06-03 cs.CL;q-bio.GN q-bio.GN https://arxiv.org/abs/2606.04552 False False 2606.04525 GENEB: Why Genomic Models Are Hard to Compare 2026-06-03 cs.CL;cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2606.04525 False False 2606.04552 LDARNet: DNA Adaptive Representation Network with Learnable Tokenization for Genomic Modeling 2026-06-03 cs.CL;q-bio.GN q-bio.GN https://arxiv.org/abs/2606.04552 False False 2606.03007 Computing the final epidemic size distributions of a multi-type Galton--Watson process 2026-06-02 q-bio.PE;stat.AP q-bio.PE https://arxiv.org/abs/2606.03007 False False 2606.03071 Evolution of cooperation in two-level Prisoner's Dilemma 2026-06-02 physics.AO;q-bio.PE q-bio.PE https://arxiv.org/abs/2606.03071 False False 2606.03118 Learning to See via Epiretinal Implant Stimulation in silico with Model-Based Deep Reinforcement Learning 2026-06-02 cs.CV;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2606.03118 False False 2606.03384 Evolution as a Process of Causal Inference 2026-06-02 math.ST;q-bio.PE;stat.TH q-bio.PE https://arxiv.org/abs/2606.03384 False False 2606.03471 A formal definition and meta-model for a machine theory of mind 2026-06-02 cs.AI;cs.MA;q-bio.NC q-bio.NC https://arxiv.org/abs/2606.03471 False False 2606.03481 Short-Term Synaptic Plasticity Stabilizes Goal-Conditioned Dynamics in a PFC-Inspired Reservoir Model for Multistep Goal-Directed Action Planning 2026-06-02 cs.NE;q-bio.NC q-bio.NC https://arxiv.org/abs/2606.03481 False False 2606.03669 Bistability of cellular traction on strain-stiffening substrates 2026-06-02 physics.bio-ph;physics.soft;q-bio.CB q-bio.CB https://arxiv.org/abs/2606.03669 False False 2606.03700 Who Is in Mind Matters: Attachment Representations in Early Childhood Synchronize Child-Adult Interacting Brains 2026-06-02 q-bio.NC q-bio.NC https://arxiv.org/abs/2606.03700 False False 2606.03976 Formalizing the Binding Problem 2026-06-02 cs.AI;cs.CV;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2606.03976 False False 2606.04066 SC-TauPath: A Structural Connectivity Attribution Framework for Mapping Tau Propagation Pathways in Alzheimer's Disease 2026-06-02 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2606.04066 False False 2606.04154 EpiFormer: Learning Antigen-Antibody Interactions for Epitope Prediction via Geometric Deep Learning 2026-06-02 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.04154 False False 2606.04234 An Octahedral Fibrous Constitutive Model for Heart Valve Mechanics and Function 2026-06-02 q-bio.TO q-bio.TO https://arxiv.org/abs/2606.04234 False False 2606.04066 SC-TauPath: A Structural Connectivity Attribution Framework for Mapping Tau Propagation Pathways in Alzheimer's Disease 2026-06-02 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2606.04066 False False 2606.04154 EpiFormer: Learning Antigen-Antibody Interactions for Epitope Prediction via Geometric Deep Learning 2026-06-02 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.04154 False False 2606.04234 An Octahedral Fibrous Constitutive Model for Heart Valve Mechanics and Function 2026-06-02 q-bio.TO q-bio.TO https://arxiv.org/abs/2606.04234 False False 2606.05225 The Language of Elution: Autoregressive Prediction of the Next Feature in Untargeted LC-HRMS Lipidomics 2026-06-02 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.05225 False False 2606.05227 Quantifying the biophysical properties of stomatocytes in health and disease 2026-06-02 cs.LG;math.MP;physics.math-ph;q-bio.BM;q-bio.CB q-bio.BM https://arxiv.org/abs/2606.05227 False False 2606.05225 The Language of Elution: Autoregressive Prediction of the Next Feature in Untargeted LC-HRMS Lipidomics 2026-06-02 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.05225 False False 2606.05227 Quantifying the biophysical properties of stomatocytes in health and disease 2026-06-02 cs.LG;math.MP;physics.math-ph;q-bio.BM;q-bio.CB q-bio.BM https://arxiv.org/abs/2606.05227 False False 2606.06516 Probabilistic learning to perform pre-onset individualised prediction of disease severity: application to Veno Occlusive Disease 2026-06-02 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.06516 False False 2606.06516 Probabilistic learning to perform pre-onset individualised prediction of disease severity: application to Veno Occlusive Disease 2026-06-02 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.06516 False False 2606.06516 Probabilistic learning to perform pre-onset individualised prediction of disease severity: application to Veno Occlusive Disease 2026-06-02 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.06516 False False 2606.14734 BRIDGE: Biological Evidence Refinement and Heterogeneous Dynamic Gating for Gene Regulatory Networks 2026-06-02 cs.AI;cs.LG;q-bio.MN q-bio.MN https://arxiv.org/abs/2606.14734 False False 2606.14737 Learning Topological Representations for Molecular Dynamics 2026-06-02 cs.LG;q-bio.BM;stat.ML q-bio.BM https://arxiv.org/abs/2606.14737 False False 2606.14734 BRIDGE: Biological Evidence Refinement and Heterogeneous Dynamic Gating for Gene Regulatory Networks 2026-06-02 cs.AI;cs.LG;q-bio.MN q-bio.MN https://arxiv.org/abs/2606.14734 False False 2606.14737 Learning Topological Representations for Molecular Dynamics 2026-06-02 cs.LG;q-bio.BM;stat.ML q-bio.BM https://arxiv.org/abs/2606.14737 False False 2606.04066 SC-TauPath: A Structural Connectivity Attribution Framework for Mapping Tau Propagation Pathways in Alzheimer's Disease 2026-06-02 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2606.04066 False False 2606.04066 SC-TauPath: A Structural Connectivity Attribution Framework for Mapping Tau Propagation Pathways in Alzheimer's Disease 2026-06-02 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2606.04066 False False 2606.01611 Peptide Structure Prediction Using Counter-Diabatic Quantum Approximate Optimization Algorithm (CD-QAOA) 2026-06-01 q-bio.BM q-bio.BM https://arxiv.org/abs/2606.01611 False False 2606.01628 Demystifying Multimodal Biomolecular Co-design With Intrinsic Geodesic Coupling 2026-06-01 cs.AI;q-bio.BM q-bio.BM https://arxiv.org/abs/2606.01628 False False 2606.01642 An agent-based model of outer membrane biogenesis in Gram-negative bacteria 2026-06-01 q-bio.SC q-bio.SC https://arxiv.org/abs/2606.01642 False False 2606.01661 Feature leakage and the identifiability of direct-dependency entropy models of neural activity 2026-06-01 q-bio.NC;q-bio.QM;stat.ME q-bio.NC https://arxiv.org/abs/2606.01661 False False 2606.01816 Site4Drug: Predicting Drug-Binding Target Sites with an AI Agent 2026-06-01 cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2606.01816 False False 2606.01841 The Neuromorphic Supremacy 2026-06-01 q-bio.NC q-bio.NC https://arxiv.org/abs/2606.01841 False False 2606.02099 Unveiling the shared grey matter signature between Alzheimer's and Parkinson's Disease 2026-06-01 q-bio.NC q-bio.NC https://arxiv.org/abs/2606.02099 False False 2606.02121 What biology can, and cannot, tell us about conscious AI 2026-06-01 q-bio.NC q-bio.NC https://arxiv.org/abs/2606.02121 False False 2606.02305 Mapping Whisper Representations to Human ECoG Responses with Interpretable Time-Resolved Neural Encoding 2026-06-01 cs.HC;q-bio.NC q-bio.NC https://arxiv.org/abs/2606.02305 False False 2606.02385 How Optimality Structures Sparse Dictionaries: A Theory for Understanding SAE Representations 2026-06-01 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2606.02385 False False 2606.02386 AgentPLM: Agentic Protein Language Models with Reasoning-Augmented Decoding for Protein Sequence Design 2026-06-01 cs.AI;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.02386 False False 2606.02392 Topology as Logic: Structural Role Geometry Across Formal, Software, Biological, and Prebiotic Systems 2026-06-01 cs.LO;cs.SI;q-bio.NC q-bio.NC https://arxiv.org/abs/2606.02392 False False 2606.02408 Structure-Informed Multiple Sequence Alignment: A Formal Model and Hardness Results 2026-06-01 cs.CC;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.02408 False False 2606.02462 APLSuite: An Integrated Suite for CD4+ T Cell Epitope Prediction via Antigen Processing Likelihood 2026-06-01 q-bio.BM q-bio.BM https://arxiv.org/abs/2606.02462 False False 2606.01611 Peptide Structure Prediction Using Counter-Diabatic Quantum Approximate Optimization Algorithm (CD-QAOA) 2026-06-01 q-bio.BM q-bio.BM https://arxiv.org/abs/2606.01611 False False 2606.01628 Demystifying Multimodal Biomolecular Co-design With Intrinsic Geodesic Coupling 2026-06-01 cs.AI;q-bio.BM q-bio.BM https://arxiv.org/abs/2606.01628 False False 2606.01642 An agent-based model of outer membrane biogenesis in Gram-negative bacteria 2026-06-01 q-bio.SC q-bio.SC https://arxiv.org/abs/2606.01642 False False 2606.01661 Feature leakage and the identifiability of direct-dependency entropy models of neural activity 2026-06-01 q-bio.NC;q-bio.QM;stat.ME q-bio.NC https://arxiv.org/abs/2606.01661 False False 2606.01816 Site4Drug: Predicting Drug-Binding Target Sites with an AI Agent 2026-06-01 cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2606.01816 False False 2606.01841 The Neuromorphic Supremacy 2026-06-01 q-bio.NC q-bio.NC https://arxiv.org/abs/2606.01841 False False 2606.02099 Unveiling the shared grey matter signature between Alzheimer's and Parkinson's Disease 2026-06-01 q-bio.NC q-bio.NC https://arxiv.org/abs/2606.02099 False False 2606.02121 What biology can, and cannot, tell us about conscious AI 2026-06-01 q-bio.NC q-bio.NC https://arxiv.org/abs/2606.02121 False False 2606.02305 Mapping Whisper Representations to Human ECoG Responses with Interpretable Time-Resolved Neural Encoding 2026-06-01 cs.HC;q-bio.NC q-bio.NC https://arxiv.org/abs/2606.02305 False False 2606.02385 How Optimality Structures Sparse Dictionaries: A Theory for Understanding SAE Representations 2026-06-01 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2606.02385 False False 2606.02386 AgentPLM: Agentic Protein Language Models with Reasoning-Augmented Decoding for Protein Sequence Design 2026-06-01 cs.AI;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.02386 False False 2606.02392 Topology as Logic: Structural Role Geometry Across Formal, Software, Biological, and Prebiotic Systems 2026-06-01 cs.LO;cs.SI;q-bio.NC q-bio.NC https://arxiv.org/abs/2606.02392 False False 2606.02408 Structure-Informed Multiple Sequence Alignment: A Formal Model and Hardness Results 2026-06-01 cs.CC;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.02408 False False 2606.02462 APLSuite: An Integrated Suite for CD4+ T Cell Epitope Prediction via Antigen Processing Likelihood 2026-06-01 q-bio.BM q-bio.BM https://arxiv.org/abs/2606.02462 False False 2606.02840 Self-Regulation through Communication in Evolved Neural Agents 2026-06-01 cs.MA;cs.NE;physics.AO;q-bio.PE q-bio.PE https://arxiv.org/abs/2606.02840 False False 2606.02867 The Epi-LLM Framework: probing LLM behavioral priors through epidemiological agent-based models 2026-06-01 cs.AI;cs.MA;q-bio.PE q-bio.PE https://arxiv.org/abs/2606.02867 False False 2606.02937 BEAST3D: Animal behavioral analysis and neural encoding from multi-view video via Gaussian splatting 2026-06-01 cs.CV;q-bio.NC q-bio.NC https://arxiv.org/abs/2606.02937 False False 2606.04020 SpliceBind: Isoform-Aware Prediction of Binding Pocket Druggability 2026-06-01 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.04020 False False 2606.04021 Structure-Aware Prediction of PROTAC-Mediated Protein Degradability via Graph Neural Networks 2026-06-01 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.04021 False False 2606.04020 SpliceBind: Isoform-Aware Prediction of Binding Pocket Druggability 2026-06-01 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.04020 False False 2606.04021 Structure-Aware Prediction of PROTAC-Mediated Protein Degradability via Graph Neural Networks 2026-06-01 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.04021 False False 2606.02462 APLSuite: An Integrated Suite for CD4+ T Cell Epitope Prediction via Antigen Processing Likelihood 2026-06-01 q-bio.BM q-bio.BM https://arxiv.org/abs/2606.02462 False False 2606.02462 APLSuite: An Integrated Suite for CD4+ T Cell Epitope Prediction via Antigen Processing Likelihood 2026-06-01 q-bio.BM q-bio.BM https://arxiv.org/abs/2606.02462 False False 2606.02386 AgentPLM: Agentic Protein Language Models with Reasoning-Augmented Decoding for Protein Sequence Design 2026-06-01 cs.AI;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.02386 False False 2606.02867 The Epi-LLM Framework: probing LLM behavioral priors through epidemiological agent-based models 2026-06-01 cs.AI;cs.MA;q-bio.PE q-bio.PE https://arxiv.org/abs/2606.02867 False False 2606.00955 CryoProt: A Protein Pretraining Framework with Cross-Box Interactions on Cryo-EM Density Maps 2026-05-31 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.00955 False False 2606.01193 Modulation-Reaction Networks 2026-05-31 cs.LO;q-bio.MN;q-bio.QM q-bio.MN https://arxiv.org/abs/2606.01193 False False 2606.01227 DAGGER: Gradient-Free Construction of Transiently Amplifying Networks under Hard Connectivity Constraints 2026-05-31 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2606.01227 False False 2606.01264 A 1000-hour EEG-EMG-audio dataset of Japanese speech production 2026-05-31 cs.HC;cs.SD;eess.AS;eess.SP;q-bio.NC q-bio.NC https://arxiv.org/abs/2606.01264 False False 2606.01329 Conditioned free-energy density of proteins using unbalanced solutions to constraint satisfaction problems 2026-05-31 cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2606.01329 False False 2606.01357 Hypergraphs from multivariate connectivity: caCoh-based EEG/MEG representation 2026-05-31 physics.data-an;q-bio.NC;q-bio.QM q-bio.NC https://arxiv.org/abs/2606.01357 False False 2606.00955 CryoProt: A Protein Pretraining Framework with Cross-Box Interactions on Cryo-EM Density Maps 2026-05-31 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.00955 False False 2606.01193 Modulation-Reaction Networks 2026-05-31 cs.LO;q-bio.MN;q-bio.QM q-bio.MN https://arxiv.org/abs/2606.01193 False False 2606.01227 DAGGER: Gradient-Free Construction of Transiently Amplifying Networks under Hard Connectivity Constraints 2026-05-31 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2606.01227 False False 2606.01264 A 1000-hour EEG-EMG-audio dataset of Japanese speech production 2026-05-31 cs.HC;cs.SD;eess.AS;eess.SP;q-bio.NC q-bio.NC https://arxiv.org/abs/2606.01264 False False 2606.01329 Conditioned free-energy density of proteins using unbalanced solutions to constraint satisfaction problems 2026-05-31 cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2606.01329 False False 2606.01357 Hypergraphs from multivariate connectivity: caCoh-based EEG/MEG representation 2026-05-31 physics.data-an;q-bio.NC;q-bio.QM q-bio.NC https://arxiv.org/abs/2606.01357 False False 2606.02650 Using Machine Learning to Enhance Hyperparameter Optimization in Pandemic Modeling: Case study of COVID-19 Dynamics in Ghana 2026-05-31 q-bio.QM q-bio.QM https://arxiv.org/abs/2606.02650 False False 2606.01357 Hypergraphs from multivariate connectivity: caCOH-based EEG/MEG representation 2026-05-31 physics.data-an;q-bio.NC;q-bio.QM q-bio.NC https://arxiv.org/abs/2606.01357 False False 2606.01357 Hypergraphs from multivariate connectivity: caCOH-based EEG/MEG representation 2026-05-31 physics.data-an;q-bio.NC;q-bio.QM q-bio.NC https://arxiv.org/abs/2606.01357 False False 2606.00483 Annotation-Informed Block-Sparse Bayesian Modeling for cis-Expression Prediction 2026-05-30 cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2606.00483 False False 2606.00555 Probe Before You Edit: Probing-Guided Molecular Optimization for LLM Agents in Structure-Based Drug Design 2026-05-30 cs.AI;q-bio.BM q-bio.BM https://arxiv.org/abs/2606.00555 False False 2606.00568 On the Recoverability of Causal Relations from Bulk Gene Expression Data 2026-05-30 cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2606.00568 False False 2606.00667 Cortex and subcortex play distinct roles over learning when cortical memory is limited 2026-05-30 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2606.00667 False False 2606.00483 Annotation-Informed Block-Sparse Bayesian Modeling for cis-Expression Prediction 2026-05-30 cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2606.00483 False False 2606.00568 On the Recoverability of Causal Relations from Bulk Gene Expression Data 2026-05-30 cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2606.00568 False False 2606.00667 Cortex and subcortex play distinct roles over learning when cortical memory is limited 2026-05-30 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2606.00667 False False 2606.02629 Enhancing Protein-Protein Interaction Prediction with Hierarchical Motif-based Multimodal Protein Embedding 2026-05-30 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.02629 False False 2606.00555 Probe Before You Edit: Probing-Guided Molecular Optimization for LLM Agents in Structure-Based Drug Design 2026-05-30 cs.AI;q-bio.BM q-bio.BM https://arxiv.org/abs/2606.00555 False False 2606.04011 Towards an Ideometrics-Based Understanding of Consciousness, Time, Space and Dreams 2026-05-30 q-bio.NC q-bio.NC https://arxiv.org/abs/2606.04011 False False 2606.04011 Towards an Ideometrics-Based Understanding of Consciousness, Time, Space and Dreams 2026-05-30 q-bio.NC q-bio.NC https://arxiv.org/abs/2606.04011 False False 2606.00568 On the Recoverability of Causal Relations from Bulk Gene Expression Data 2026-05-30 cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2606.00568 False False 2606.12449 A quantum-like benchmark for context-sensitive associative memory with adaptive plasticity 2026-05-30 q-bio.NC q-bio.NC https://arxiv.org/abs/2606.12449 False False 2606.12449 A quantum-like benchmark for context-sensitive associative memory with adaptive plasticity 2026-05-30 q-bio.NC q-bio.NC https://arxiv.org/abs/2606.12449 False False 2605.30831 The Geometry of Activity Cliffs: Representation Dependence and Multi-Scale Characterization of Activity Landscapes 2026-05-29 cs.LG;physics.chem-ph;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.30831 False False 2605.30864 What makes an action sequence enjoyable to watch? 2026-05-29 cs.HC;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.30864 False False 2605.30882 Extended predictive coding framework as variational free-energy minimisation under exponential-family assumption 2026-05-29 q-bio.NC q-bio.NC https://arxiv.org/abs/2605.30882 False False 2605.30950 Coordination without communication: beyond optimisation and geometric Brownian motion 2026-05-29 physics.soc-ph;q-bio.PE;stat.AP q-bio.PE https://arxiv.org/abs/2605.30950 False False 2605.30963 AMix-2: Establishing Protein as a Native Modality in Large Language Models 2026-05-29 cs.AI;q-bio.BM q-bio.BM https://arxiv.org/abs/2605.30963 False False 2605.30974 Morphological routes to extinction: A mechanistic assessment of habitat loss 2026-05-29 q-bio.PE q-bio.PE https://arxiv.org/abs/2605.30974 False False 2605.31015 Analysis of a two patch model for disease vector-animal dynamics with non-linear anthropization-driven migration 2026-05-29 q-bio.PE q-bio.PE https://arxiv.org/abs/2605.31015 False False 2605.31071 Tree Containment Parameterized by Scanwidth 2026-05-29 cs.CC;cs.DS;q-bio.PE q-bio.PE https://arxiv.org/abs/2605.31071 False False 2605.31236 SwitchCraft: A Programmatic Framework for Designing State-Switching Proteins 2026-05-29 q-bio.BM q-bio.BM https://arxiv.org/abs/2605.31236 False False 2605.31274 Derivation, Analysis and Simulation of a Spatio-Temporal Epidemiology Model with Memory 2026-05-29 math.AP;q-bio.PE q-bio.PE https://arxiv.org/abs/2605.31274 False False 2605.31296 mRNAutilus: Multi-Objective-Guided Discrete Generation of mRNA with Optimized Therapeutic Properties 2026-05-29 cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2605.31296 False False 2605.31305 Consensus-level substitution rates are distinct from the virion-level rate 2026-05-29 q-bio.PE;stat.ME q-bio.PE https://arxiv.org/abs/2605.31305 False False 2605.31473 The Metastable Mind: Neural Underpinnings of Naturalistic Cognition Through the Synthesis of Event Segmentation and Metastable Neural States 2026-05-29 q-bio.NC q-bio.NC https://arxiv.org/abs/2605.31473 False False 2605.31498 Scalable Inference-Time Annealing with Surrogate Likelihood Estimators 2026-05-29 cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2605.31498 False False 2605.31522 Chem-PerturBridge: a harmonized compendium of small molecule perturbation transcriptomic effects 2026-05-29 cs.LG;q-bio.GN;q-bio.QM q-bio.GN https://arxiv.org/abs/2605.31522 False False 2605.31539 Automated Prediction of Postoperative Pancreatic Fistula Using Preoperative Computed Tomography 2026-05-29 cs.CV;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.31539 False False 2605.30831 The Geometry of Activity Cliffs: Representation Dependence and Multi-Scale Characterization of Activity Landscapes 2026-05-29 cs.LG;physics.chem-ph;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.30831 False False 2605.30864 What makes an action sequence enjoyable to watch? 2026-05-29 cs.HC;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.30864 False False 2605.30882 Extended predictive coding framework as variational free-energy minimisation under exponential-family assumption 2026-05-29 q-bio.NC q-bio.NC https://arxiv.org/abs/2605.30882 False False 2605.30950 Coordination without communication: beyond optimisation and geometric Brownian motion 2026-05-29 physics.soc-ph;q-bio.PE;stat.AP q-bio.PE https://arxiv.org/abs/2605.30950 False False 2605.30963 AMix-2: Establishing Protein as a Native Modality in Large Language Models 2026-05-29 cs.AI;q-bio.BM q-bio.BM https://arxiv.org/abs/2605.30963 False False 2605.30974 Morphological routes to extinction: A mechanistic assessment of habitat loss 2026-05-29 q-bio.PE q-bio.PE https://arxiv.org/abs/2605.30974 False False 2605.31071 Tree Containment Parameterized by Scanwidth 2026-05-29 cs.CC;cs.DS;q-bio.PE q-bio.PE https://arxiv.org/abs/2605.31071 False False 2605.31236 SwitchCraft: A Programmatic Framework for Designing State-Switching Proteins 2026-05-29 q-bio.BM q-bio.BM https://arxiv.org/abs/2605.31236 False False 2605.31274 Derivation, Analysis and Simulation of a Spatio-Temporal Epidemiology Model with Memory 2026-05-29 math.AP;q-bio.PE q-bio.PE https://arxiv.org/abs/2605.31274 False False 2605.31296 mRNAutilus: Multi-Objective-Guided Discrete Generation of mRNA with Optimized Therapeutic Properties 2026-05-29 cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2605.31296 False False 2605.31305 Consensus-level substitution rates are distinct from the virion-level rate 2026-05-29 q-bio.PE;stat.ME q-bio.PE https://arxiv.org/abs/2605.31305 False False 2605.31473 The Metastable Mind: Neural Underpinnings of Naturalistic Cognition Through the Synthesis of Event Segmentation and Metastable Neural States 2026-05-29 q-bio.NC q-bio.NC https://arxiv.org/abs/2605.31473 False False 2605.31522 Chem-PerturBridge: a harmonized compendium of small molecule perturbation transcriptomic effects 2026-05-29 cs.LG;q-bio.GN;q-bio.QM q-bio.GN https://arxiv.org/abs/2605.31522 False False 2605.31539 Automated Prediction of Postoperative Pancreatic Fistula Using Preoperative Computed Tomography 2026-05-29 cs.CV;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.31539 False False 2606.00192 Mechanics of Pandemics 2026-05-29 q-bio.PE q-bio.PE https://arxiv.org/abs/2606.00192 False False 2606.00196 Evolution of cooperation in the multiplex 2026-05-29 physics.soc-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2606.00196 False False 2606.00226 Consciousness, AI, and the Limits of Scientific Explanation 2026-05-29 q-bio.NC q-bio.NC https://arxiv.org/abs/2606.00226 False False 2606.00243 Dynamics and Representation Structure of Local Approximations to Gradient-Based Learning in Linear Recurrent Neural Networks 2026-05-29 cs.NE;q-bio.NC;stat.ML q-bio.NC https://arxiv.org/abs/2606.00243 False False 2606.00286 Localization of Active Particles on Random Arrays of Parallel Filaments 2026-05-29 physics.bio-ph;physics.dis-nn;physics.stat-mech;q-bio.SC q-bio.SC https://arxiv.org/abs/2606.00286 False False 2606.00326 On the synaptic matrix eigenvalues of sparsely connected neural networks 2026-05-29 physics.dis-nn;q-bio.NC q-bio.NC https://arxiv.org/abs/2606.00326 False False 2606.00373 Sequential chaotic oscillations in excitatory-inhibitory threshold-linear networks 2026-05-29 q-bio.NC q-bio.NC https://arxiv.org/abs/2606.00373 False False 2605.31015 Analysis of a two patch model for disease vector-animal dynamics with non-linear anthropization-driven migration 2026-05-29 q-bio.PE q-bio.PE https://arxiv.org/abs/2605.31015 False False 2605.31498 Scalable Inference-Time Annealing with Surrogate Likelihood Estimators 2026-05-29 cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2605.31498 False False 2606.00192 Mechanics of Pandemics 2026-05-29 q-bio.PE q-bio.PE https://arxiv.org/abs/2606.00192 False False 2606.00196 Evolution of cooperation in the multiplex 2026-05-29 physics.soc-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2606.00196 False False 2606.00226 Consciousness, AI, and the Limits of Scientific Explanation 2026-05-29 q-bio.NC q-bio.NC https://arxiv.org/abs/2606.00226 False False 2606.00243 Dynamics and Representation Structure of Local Approximations to Gradient-Based Learning in Linear Recurrent Neural Networks 2026-05-29 cs.NE;q-bio.NC;stat.ML q-bio.NC https://arxiv.org/abs/2606.00243 False False 2606.00286 Localization of Active Particles on Random Arrays of Parallel Filaments 2026-05-29 physics.bio-ph;physics.dis-nn;physics.stat-mech;q-bio.SC q-bio.SC https://arxiv.org/abs/2606.00286 False False 2606.00326 On the synaptic matrix eigenvalues of sparsely connected neural networks 2026-05-29 physics.dis-nn;q-bio.NC q-bio.NC https://arxiv.org/abs/2606.00326 False False 2606.00373 Sequential chaotic oscillations in excitatory-inhibitory threshold-linear networks 2026-05-29 q-bio.NC q-bio.NC https://arxiv.org/abs/2606.00373 False False 2605.31015 Analysis of a two patch model for disease vector-animal dynamics with non-linear anthropization-driven migration 2026-05-29 q-bio.PE q-bio.PE https://arxiv.org/abs/2605.31015 False False 2605.31498 Scalable Inference-Time Annealing with Surrogate Likelihood Estimators 2026-05-29 cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2605.31498 False False 2606.02624 TadA-Bench: A Million-Variant Benchmark for Future-Round Discovery Toward Agentic Protein Engineering 2026-05-29 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.02624 False False 2606.02625 DXA-Derived Skeletal Phenotypes and Hip Fracture Risk: A Backdoor-Adjusted Causal Analysis 2026-05-29 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.02625 False False 2606.04010 The Variance Brain Foundation Models Forgot: Third-Order Statistics Predict Cognition Where Billion-Parameter Models Fail 2026-05-29 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2606.04010 False False 2606.04010 The Variance Brain Foundation Models Forgot: Third-Order Statistics Predict Cognition Where Billion-Parameter Models Fail 2026-05-29 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2606.04010 False False 2605.31071 Tree Containment Parameterized by Scanwidth 2026-05-29 cs.CC;cs.DS;q-bio.PE q-bio.PE https://arxiv.org/abs/2605.31071 False False 2605.31071 Tree Containment Parameterized by Scanwidth 2026-05-29 cs.CC;cs.DS;q-bio.PE q-bio.PE https://arxiv.org/abs/2605.31071 False False 2606.07607 Position: Genomic Model Research Must Move Beyond Anecdotal Evaluation of Interpretability Methods 2026-05-29 cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2606.07607 False False 2605.31015 Analysis of a two patch model for disease vector-animal dynamics with non-linear anthropization-driven migration 2026-05-29 q-bio.PE q-bio.PE https://arxiv.org/abs/2605.31015 False False 2606.00196 Evolution of cooperation in the multiplex 2026-05-29 physics.soc-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2606.00196 False False 2605.31498 Scalable Inference-Time Annealing with Surrogate Likelihood Estimators 2026-05-29 cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2605.31498 False False 2606.00196 Evolution of cooperation in the multiplex 2026-05-29 physics.soc-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2606.00196 False False 2606.00196 Evolution of cooperation in the multiplex 2026-05-29 physics.soc-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2606.00196 False False 2606.00226 Consciousness, AI, and the Limits of Scientific Explanation 2026-05-29 q-bio.NC q-bio.NC https://arxiv.org/abs/2606.00226 False False 2606.00226 Consciousness, AI, and the Limits of Scientific Explanation 2026-05-29 q-bio.NC q-bio.NC https://arxiv.org/abs/2606.00226 False False 2605.30882 Extended predictive coding framework as variational free-energy minimisation under exponential-family assumption 2026-05-29 q-bio.NC q-bio.NC https://arxiv.org/abs/2605.30882 False False 2605.30882 Extended predictive coding framework as variational free-energy minimisation under exponential-family assumption 2026-05-29 q-bio.NC q-bio.NC https://arxiv.org/abs/2605.30882 False False 2606.00226 Consciousness, AI, and the Limits of Scientific Explanation 2026-05-29 q-bio.NC q-bio.NC https://arxiv.org/abs/2606.00226 False False 2606.00226 Consciousness, AI, and the Limits of Scientific Explanation 2026-05-29 q-bio.NC q-bio.NC https://arxiv.org/abs/2606.00226 False False 2605.29228 Traditional machine learning vs. deep learning from dynamic graph representations of proteins' 3D folds in the task of protein structure classification 2026-05-28 cs.LG;q-bio.MN q-bio.MN https://arxiv.org/abs/2605.29228 False False 2605.29329 Mixing Vector Model for Copolymer Inference via Mixed Integer Linear Programming 2026-05-28 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.29329 False False 2605.29355 Neural-Behavioral Representation of Natural Whole-body Movement in Monkeys 2026-05-28 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.29355 False False 2605.29529 Common Noise-Induced Group-Level Synchronization Between Uncoupled Groups of Oscillators 2026-05-28 physics.AO;physics.stat-mech;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.29529 False False 2605.29587 FPLIER: Federated Pathway-Level Information Extractor 2026-05-28 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.29587 False False 2605.29588 Brain-IT-VQA: From Brain Signals to Answers 2026-05-28 cs.AI;cs.CV;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.29588 False False 2605.29677 Embodied Virtual Reality Feedback Reshapes Neural Representations to Support Continuous Three-Dimensional Motor Imagery Decoding 2026-05-28 cs.HC;eess.SP;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.29677 False False 2605.29703 Subcortical Shape Variations and Their Associations with Cognition Across the 8th Decade of Life. A Study in the Lothian Birth Cohort 1936 2026-05-28 cs.CV;q-bio.NC;q-bio.TO q-bio.NC https://arxiv.org/abs/2605.29703 False False 2605.29736 Phylogenetic dynamics of MRCA ages and empirical moments of a Brownian trait 2026-05-28 math.PR;q-bio.PE q-bio.PE https://arxiv.org/abs/2605.29736 False False 2605.29907 Stochastic network epidemic model and particle filter: General framework and application to influenza in Japan 2026-05-28 q-bio.QM q-bio.QM https://arxiv.org/abs/2605.29907 False False 2605.29958 Lattice Brownian bees with cooperative reproduction: steady states, collapse, and spreading 2026-05-28 math.PR;physics.PS;physics.stat-mech;q-bio.PE q-bio.PE https://arxiv.org/abs/2605.29958 False False 2605.30109 Training Ecosystems: A Computational Approach to Uncovering Learning Behavior in Unconventional Contexts 2026-05-28 q-bio.PE;q-bio.QM q-bio.PE https://arxiv.org/abs/2605.30109 False False 2605.30275 Digitally enriching a screening population for pancreatic cancer using routine blood-based measures and clinical histories 2026-05-28 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.30275 False False 2605.29228 Traditional machine learning vs. deep learning from dynamic graph representations of proteins' 3D folds in the task of protein structure classification 2026-05-28 cs.LG;q-bio.MN q-bio.MN https://arxiv.org/abs/2605.29228 False False 2605.29329 Mixing Vector Model for Copolymer Inference via Mixed Integer Linear Programming 2026-05-28 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.29329 False False 2605.29355 Neural-Behavioral Representation of Natural Whole-body Movement in Monkeys 2026-05-28 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.29355 False False 2605.29529 Common Noise-Induced Group-Level Synchronization Between Uncoupled Groups of Oscillators 2026-05-28 physics.AO;physics.stat-mech;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.29529 False False 2605.29587 FPLIER: Federated Pathway-Level Information Extractor 2026-05-28 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.29587 False False 2605.29588 Brain-IT-VQA: From Brain Signals to Answers 2026-05-28 cs.AI;cs.CV;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.29588 False False 2605.29677 Embodied Virtual Reality Feedback Reshapes Neural Representations to Support Continuous Three-Dimensional Motor Imagery Decoding 2026-05-28 cs.HC;eess.SP;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.29677 False False 2605.29703 Subcortical Shape Variations and Their Associations with Cognition Across the 8th Decade of Life. A Study in the Lothian Birth Cohort 1936 2026-05-28 cs.CV;q-bio.NC;q-bio.TO q-bio.NC https://arxiv.org/abs/2605.29703 False False 2605.29736 Phylogenetic dynamics of MRCA ages and empirical moments of a Brownian trait 2026-05-28 math.PR;q-bio.PE q-bio.PE https://arxiv.org/abs/2605.29736 False False 2605.29907 Stochastic network epidemic model and particle filter: General framework and application to influenza in Japan 2026-05-28 q-bio.QM q-bio.QM https://arxiv.org/abs/2605.29907 False False 2605.29958 Lattice Brownian bees with cooperative reproduction: steady states, collapse, and spreading 2026-05-28 math.PR;physics.PS;physics.stat-mech;q-bio.PE q-bio.PE https://arxiv.org/abs/2605.29958 False False 2605.30109 Training Ecosystems: A Computational Approach to Uncovering Learning Behavior in Unconventional Contexts 2026-05-28 q-bio.PE;q-bio.QM q-bio.PE https://arxiv.org/abs/2605.30109 False False 2605.30275 Digitally enriching a screening population for pancreatic cancer using routine blood-based measures and clinical histories 2026-05-28 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.30275 False False 2605.30382 On the Connection Between Differential Population Growth Rate and Epidemic Reproduction Numbers 2026-05-28 q-bio.PE;q-bio.QM q-bio.PE https://arxiv.org/abs/2605.30382 False False 2605.30399 A Novel Computer Vision Approach for Assessing Fish Responses to Intrusive Objects in Aquaculture 2026-05-28 cs.LG;eess.IV;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.30399 False False 2605.30463 Meta-analysis of scRNA-seq data for choroidal endothelial cells in dry Age-related Macular Degeneration 2026-05-28 q-bio.GN q-bio.GN https://arxiv.org/abs/2605.30463 False False 2605.30518 Gaussian Mixture Model-Based Focused Refinement for Enhanced Flexible Structure Determination in CryoEM and CryoET 2026-05-28 q-bio.QM q-bio.QM https://arxiv.org/abs/2605.30518 False False 2605.30522 Private Noise and Public Error in Collective Information Acquisition 2026-05-28 cs.SI;physics.soc-ph;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.30522 False False 2605.30552 High-Fidelity 3D Simulator for Synthetic fNIRS Data Generation 2026-05-28 q-bio.NC q-bio.NC https://arxiv.org/abs/2605.30552 False False 2605.30556 Supervised Training Rapidly Degrades Early Visual Cortex Alignment Across Biologically Plausible Learning Rules 2026-05-28 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.30556 False False 2605.30566 Participation Costs Narrow Democratic Cooperation 2026-05-28 econ.TH;physics.soc-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2605.30566 False False 2605.30591 Obesity and Sociodemographic Factors in Luminal Breast Cancer 2026-05-28 q-bio.QM q-bio.QM https://arxiv.org/abs/2605.30591 False False 2605.30635 CellBRIDGE: Learning Cellular Trajectories via Interaction-Aware Alignment 2026-05-28 cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2605.30635 False False 2605.30662 Spatio-temporal stochastic graph-based learning for infectious disease forecasting 2026-05-28 cs.LG;q-bio.PE q-bio.PE https://arxiv.org/abs/2605.30662 False False 2605.30382 On the Connection Between Differential Population Growth Rate and Epidemic Reproduction Numbers 2026-05-28 q-bio.PE;q-bio.QM q-bio.PE https://arxiv.org/abs/2605.30382 False False 2605.30399 A Novel Computer Vision Approach for Assessing Fish Responses to Intrusive Objects in Aquaculture 2026-05-28 cs.LG;eess.IV;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.30399 False False 2605.30463 Meta-analysis of scRNA-seq data for choroidal endothelial cells in dry Age-related Macular Degeneration 2026-05-28 q-bio.GN q-bio.GN https://arxiv.org/abs/2605.30463 False False 2605.30518 Gaussian Mixture Model-Based Focused Refinement for Enhanced Flexible Structure Determination in CryoEM and CryoET 2026-05-28 q-bio.QM q-bio.QM https://arxiv.org/abs/2605.30518 False False 2605.30522 Private Noise and Public Error in Collective Information Acquisition 2026-05-28 cs.SI;physics.soc-ph;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.30522 False False 2605.30552 High-Fidelity 3D Simulator for Synthetic fNIRS Data Generation 2026-05-28 q-bio.NC q-bio.NC https://arxiv.org/abs/2605.30552 False False 2605.30556 Supervised Training Rapidly Degrades Early Visual Cortex Alignment Across Biologically Plausible Learning Rules 2026-05-28 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.30556 False False 2605.30566 Participation Costs Narrow Democratic Cooperation 2026-05-28 econ.TH;physics.soc-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2605.30566 False False 2605.30591 Obesity and Sociodemographic Factors in Luminal Breast Cancer 2026-05-28 q-bio.QM q-bio.QM https://arxiv.org/abs/2605.30591 False False 2605.30635 CellBRIDGE: Learning Cellular Trajectories via Interaction-Aware Alignment 2026-05-28 cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2605.30635 False False 2605.30662 Spatio-temporal stochastic graph-based learning for infectious disease forecasting 2026-05-28 cs.LG;q-bio.PE q-bio.PE https://arxiv.org/abs/2605.30662 False False 2605.29355 Neural-Behavioral Representation of Natural Whole-body Movement in Monkeys 2026-05-28 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.29355 False False 2605.29588 Brain-IT-VQA: From Brain Signals to Answers 2026-05-28 cs.AI;cs.CV;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.29588 False False 2605.29228 Traditional machine learning vs. deep learning from dynamic graph representations of proteins' 3D folds in the task of protein structure classification 2026-05-28 cs.LG;q-bio.MN q-bio.MN https://arxiv.org/abs/2605.29228 False False 2605.29228 Traditional machine learning vs. deep learning from dynamic graph representations of proteins' 3D folds in the task of protein structure classification 2026-05-28 cs.LG;q-bio.MN q-bio.MN https://arxiv.org/abs/2605.29228 False False 2605.27861 From Detection to Mechanism: Cross-Attention Graph Neural Networks Enable Drug-Drug Interaction Type Prediction An Ablation Study with Acetylsalicylic Acid Validation 2026-05-27 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.27861 False False 2605.27928 Experimental Collapse in Virophysics: Protocol-Resolved Observation, Inference, and Plaque-Assay Blindness 2026-05-27 physics.bio-ph;q-bio.BM q-bio.BM https://arxiv.org/abs/2605.27928 False False 2605.27929 Exploratory Experience Shapes the Geometry of Predictive Representations 2026-05-27 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.27929 False False 2605.27986 An Evolutionary Approach for Designing Stable and Highly Expressible Low-Immunogenicity Therapeutic mRNA Sequences 2026-05-27 cs.CL;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.27986 False False 2605.28200 Geometry-First Generative Spatial Single-Cell Reconstruction 2026-05-27 cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2605.28200 False False 2605.28210 The Illusion of Opting in AI-Mediated Consequential Decisions 2026-05-27 cs.AI;cs.CY;cs.HC;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.28210 False False 2605.28545 PhyloFrame: A DataFrame-based Library for Fast, Flexible Phylogenetic Computation 2026-05-27 q-bio.PE q-bio.PE https://arxiv.org/abs/2605.28545 False False 2605.28651 Determinants of Phase-Separation Propensities, Material States, and Material Properties of Biomolecular Condensates 2026-05-27 physics.bio-ph;physics.soft;q-bio.MN q-bio.MN https://arxiv.org/abs/2605.28651 False False 2605.28652 Widespread quasi-steady state assumption in biological interaction modeling mischaracterizes system transitions 2026-05-27 physics.CD;q-bio.PE;q-bio.QM;q-bio.SC q-bio.PE https://arxiv.org/abs/2605.28652 False False 2605.28693 Misalignment Between Backpropagation and the Hierarchy of Brain Responses to Images 2026-05-27 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.28693 False False 2605.28739 BIRDNet: Mining and Encoding Boolean Implication Knowledge Graphs as Interpretable Deep Neural Networks 2026-05-27 cs.AI;cs.LG;cs.NE;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.28739 False False 2605.28818 VLMs May Not Globally Enhance Human Alignment over LLMs During Natural Reading 2026-05-27 cs.CL;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.28818 False False 2605.27861 From Detection to Mechanism: Cross-Attention Graph Neural Networks Enable Drug-Drug Interaction Type Prediction An Ablation Study with Acetylsalicylic Acid Validation 2026-05-27 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.27861 False False 2605.27929 Exploratory Experience Shapes the Geometry of Predictive Representations 2026-05-27 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.27929 False False 2605.27986 An Evolutionary Approach for Designing Stable and Highly Expressible Low-Immunogenicity Therapeutic mRNA Sequences 2026-05-27 cs.CL;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.27986 False False 2605.28200 Geometry-First Generative Spatial Single-Cell Reconstruction 2026-05-27 cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2605.28200 False False 2605.28210 The Illusion of Opting in AI-Mediated Consequential Decisions 2026-05-27 cs.AI;cs.CY;cs.HC;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.28210 False False 2605.28545 PhyloFrame: A DataFrame-based Library for Fast, Flexible Phylogenetic Computation 2026-05-27 q-bio.PE q-bio.PE https://arxiv.org/abs/2605.28545 False False 2605.28651 Determinants of Phase-Separation Propensities, Material States, and Material Properties of Biomolecular Condensates 2026-05-27 physics.bio-ph;physics.soft;q-bio.MN q-bio.MN https://arxiv.org/abs/2605.28651 False False 2605.28652 Widespread quasi-steady state assumption in biological interaction modeling mischaracterizes system transitions 2026-05-27 physics.CD;q-bio.PE;q-bio.QM;q-bio.SC q-bio.PE https://arxiv.org/abs/2605.28652 False False 2605.28693 Misalignment Between Backpropagation and the Hierarchy of Brain Responses to Images 2026-05-27 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.28693 False False 2605.28739 BIRDNet: Mining and Encoding Boolean Implication Knowledge Graphs as Interpretable Deep Neural Networks 2026-05-27 cs.AI;cs.LG;cs.NE;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.28739 False False 2605.28818 VLMs May Not Globally Enhance Human Alignment over LLMs During Natural Reading 2026-05-27 cs.CL;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.28818 False False 2605.28886 Computational Modeling of Antibody-Antigen Complexes: PLM-Based and MSA-Based Approaches 2026-05-27 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.28886 False False 2605.27928 Experimental Collapse in Virophysics: Protocol-Resolved Observation, Inference, and Plaque-Assay Blindness 2026-05-27 physics.bio-ph;q-bio.BM q-bio.BM https://arxiv.org/abs/2605.27928 False False 2605.28976 On a phenotype-structured Shigesada--Kawasaki--Teramoto model: Turing instability and pattern selection under fast phenotype switching 2026-05-27 q-bio.PE q-bio.PE https://arxiv.org/abs/2605.28976 False False 2605.29158 PROTOCOL: Late Interaction Retrieval for Protein Homolog Search 2026-05-27 cs.IR;cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2605.29158 False False 2605.27928 Experimental Collapse in Virophysics: Protocol-Resolved Observation, Inference, and Plaque-Assay Blindness 2026-05-27 physics.bio-ph;q-bio.BM q-bio.BM https://arxiv.org/abs/2605.27928 False False 2605.28886 Computational Modeling of Antibody-Antigen Complexes: PLM-Based and MSA-Based Approaches 2026-05-27 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.28886 False False 2605.28976 On a phenotype-structured Shigesada--Kawasaki--Teramoto model: Turing instability and pattern selection under fast phenotype switching 2026-05-27 q-bio.PE q-bio.PE https://arxiv.org/abs/2605.28976 False False 2605.29158 PROTOCOL: Late Interaction Retrieval for Protein Homolog Search 2026-05-27 cs.IR;cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2605.29158 False False 2605.28210 The Illusion of Opting in AI-Mediated Consequential Decisions 2026-05-27 cs.AI;cs.CY;cs.HC;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.28210 False False 2605.28210 The Illusion of Opting in AI-Mediated Consequential Decisions 2026-05-27 cs.AI;cs.CY;cs.HC;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.28210 False False 2605.28818 Do VLMs Align Better with Humans than LLMs during Natural Reading? 2026-05-27 cs.CL;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.28818 False False 2605.28818 Do VLMs Align Better with Humans than LLMs during Natural Reading? 2026-05-27 cs.CL;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.28818 False False 2605.26411 Fixation location in structured populations 2026-05-26 q-bio.PE q-bio.PE https://arxiv.org/abs/2605.26411 False False 2605.26551 Random neural networks match observed dimensionality of neural population recordings and motivate stronger experimental tests 2026-05-26 physics.bio-ph;physics.dis-nn;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.26551 False False 2605.26690 Self-Improvement Imitation with Biologically Guided Search for Protein Design Under Oracle Budgets 2026-05-26 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.26690 False False 2605.26852 Recognizing Level-k-Based Phylogenetic Networks is NP-Complete 2026-05-26 cs.DM;q-bio.PE q-bio.PE https://arxiv.org/abs/2605.26852 False False 2605.26856 The Sensation Modulating Network:Haltability as the architectural ground for object-directed phenomenology 2026-05-26 cs.AI;cs.RO;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.26856 False False 2605.26904 SpCAST: Decoding spatial transcriptomics at single-cell resolution with fast and interpretable analysis 2026-05-26 q-bio.CB q-bio.CB https://arxiv.org/abs/2605.26904 False False 2605.26921 Revealing the core dimensions underlying representations in brains, behavior and AI 2026-05-26 cs.CV;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.26921 False False 2605.26973 Signal-to-Noise Ratio and Sample Size Govern Representational Alignment in Neural Networks 2026-05-26 cs.LG;cs.NE;physics.dis-nn;q-bio.NC;stat.ML q-bio.NC https://arxiv.org/abs/2605.26973 False False 2605.26998 Probabilistic Recurrent Intention Switching Model 2026-05-26 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.26998 False False 2605.27100 Logistic dynamics of small populations with demographic stochasticity 2026-05-26 q-bio.PE q-bio.PE https://arxiv.org/abs/2605.27100 False False 2605.27189 Beyond Binary: Speech Representations Across the Cognitive Score Hierarchy 2026-05-26 cs.CL;cs.LG;cs.SD;eess.AS;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.27189 False False 2605.26411 Fixation location in structured populations 2026-05-26 q-bio.PE q-bio.PE https://arxiv.org/abs/2605.26411 False False 2605.26551 Random neural networks match observed dimensionality of neural population recordings and motivate stronger experimental tests 2026-05-26 physics.bio-ph;physics.dis-nn;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.26551 False False 2605.26690 Self-Improvement Imitation with Biologically Guided Search for Protein Design Under Oracle Budgets 2026-05-26 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.26690 False False 2605.26852 Recognizing Level-k-Based Phylogenetic Networks is NP-Complete 2026-05-26 cs.DM;q-bio.PE q-bio.PE https://arxiv.org/abs/2605.26852 False False 2605.26856 The Sensation Modulating Network:Haltability as the architectural ground for object-directed phenomenology 2026-05-26 cs.AI;cs.RO;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.26856 False False 2605.26904 SpCAST: Decoding spatial transcriptomics at single-cell resolution with fast and interpretable analysis 2026-05-26 q-bio.CB q-bio.CB https://arxiv.org/abs/2605.26904 False False 2605.26921 Revealing the core dimensions underlying representations in brains, behavior and AI 2026-05-26 cs.CV;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.26921 False False 2605.26973 Signal-to-Noise Ratio and Sample Size Govern Representational Alignment in Neural Networks 2026-05-26 cs.LG;cs.NE;physics.dis-nn;q-bio.NC;stat.ML q-bio.NC https://arxiv.org/abs/2605.26973 False False 2605.26998 Probabilistic Recurrent Intention Switching Model 2026-05-26 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.26998 False False 2605.27100 Logistic dynamics of small populations with demographic stochasticity 2026-05-26 q-bio.PE q-bio.PE https://arxiv.org/abs/2605.27100 False False 2605.27189 Beyond Binary: Speech Representations Across the Cognitive Score Hierarchy 2026-05-26 cs.CL;cs.LG;cs.SD;eess.AS;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.27189 False False 2605.27573 Cycle Based Computational Pipeline for Extracting Instantaneous Whisking Frequency 2026-05-26 q-bio.QM q-bio.QM https://arxiv.org/abs/2605.27573 False False 2605.27580 You Are in Control of Your State: Why Human Outcomes Are Controllable Through Causal State Intervention 2026-05-26 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.27580 False False 2605.27677 ESL-PSC Toolkit: a graphical software environment for linking shared genetic changes to convergent phenotypes 2026-05-26 q-bio.PE q-bio.PE https://arxiv.org/abs/2605.27677 False False 2605.26910 EEG-FM-Audit: A Systematic Evaluation and Analysis Pipeline for EEG Foundation Models 2026-05-26 cs.AI;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.26910 False False 2605.27573 Cycle Based Computational Pipeline for Extracting Instantaneous Whisking Frequency 2026-05-26 q-bio.QM q-bio.QM https://arxiv.org/abs/2605.27573 False False 2605.27677 ESL-PSC Toolkit: a graphical software environment for linking shared genetic changes to convergent phenotypes 2026-05-26 q-bio.PE q-bio.PE https://arxiv.org/abs/2605.27677 False False 2605.26910 EEG-FM-Audit: A Systematic Evaluation and Analysis Pipeline for EEG Foundation Models 2026-05-26 cs.AI;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.26910 False False 2605.27580 You Are in Control of Your State: Why Human Outcomes Are Controllable Through Causal State Intervention 2026-05-26 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.27580 False False 2605.27580 You Are in Control of Your State: Why Human Outcomes Are Controllable Through Causal State Intervention 2026-05-26 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.27580 False False 2606.04004 Oxygenation and spatial heterogeneity shape radiotherapy protocol ranking through phenotypic adaptation 2026-05-26 q-bio.PE;q-bio.TO q-bio.PE https://arxiv.org/abs/2606.04004 False False 2606.04004 Oxygenation and spatial heterogeneity shape radiotherapy protocol ranking through phenotypic adaptation 2026-05-26 q-bio.PE;q-bio.TO q-bio.PE https://arxiv.org/abs/2606.04004 False False 2605.26411 Fixation location in structured populations 2026-05-26 q-bio.PE q-bio.PE https://arxiv.org/abs/2605.26411 False False 2605.26921 Similarity-based matrix factorization for revealing interpretable dimensions in representational data 2026-05-26 cs.CV;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.26921 False False 2605.26921 Similarity-based representation factorization for revealing interpretable dimensions in representational data 2026-05-26 cs.CV;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.26921 False False 2605.26921 Similarity-based representation factorization for revealing interpretable dimensions in representational data 2026-05-26 cs.CV;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.26921 False False 2605.26411 Fixation location in structured populations 2026-05-26 q-bio.PE q-bio.PE https://arxiv.org/abs/2605.26411 False False 2606.04004 Oxygenation and spatial heterogeneity shape radiotherapy protocol ranking through phenotypic adaptation 2026-05-26 q-bio.PE;q-bio.TO q-bio.PE https://arxiv.org/abs/2606.04004 False False 2605.26411 Fixation location in structured populations 2026-05-26 q-bio.PE q-bio.PE https://arxiv.org/abs/2605.26411 False False 2606.04004 Oxygenation and spatial heterogeneity shape radiotherapy protocol ranking through phenotypic adaptation 2026-05-26 q-bio.PE;q-bio.TO q-bio.PE https://arxiv.org/abs/2606.04004 False False 2605.26856 The Sensation Modulating Network:Haltability as the architectural ground for object-directed phenomenology 2026-05-26 cs.AI;cs.RO;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.26856 False False 2605.26856 The Sensation Modulating Network:Haltability as the architectural ground for object-directed phenomenology 2026-05-26 cs.AI;cs.RO;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.26856 False False 2605.25388 ViroBench: Benchmarking Nucleotide Foundation Models on Viral Genomics Tasks 2026-05-25 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.25388 False False 2605.25465 AI-Driven SERS for Non-invasive and Label-Free Extracellular Vesicle Detection Across Cellular Origins in Tears and Sweat 2026-05-25 physics.data-an;physics.mes-hall;physics.optics;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.25465 False False 2605.25523 Bridging two theoretical frameworks of autocatalysis: RAF sets and stoichiometric autocatalysis 2026-05-25 q-bio.MN q-bio.MN https://arxiv.org/abs/2605.25523 False False 2605.25607 Balancing structure and randomness: maximum entropy networks for context-dependent computations 2026-05-25 physics.stat-mech;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.25607 False False 2605.25875 The impact of behavioral homophily and conformity on epidemic spreading in networks with large groups 2026-05-25 physics.app-ph;physics.soc-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2605.25875 False False 2605.25388 ViroBench: Benchmarking Nucleotide Foundation Models on Viral Genomics Tasks 2026-05-25 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.25388 False False 2605.25465 AI-Driven SERS for Non-invasive and Label-Free Extracellular Vesicle Detection Across Cellular Origins in Tears and Sweat 2026-05-25 physics.data-an;physics.mes-hall;physics.optics;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.25465 False False 2605.25523 Bridging two theoretical frameworks of autocatalysis: RAF sets and stoichiometric autocatalysis 2026-05-25 q-bio.MN q-bio.MN https://arxiv.org/abs/2605.25523 False False 2605.25607 Balancing structure and randomness: maximum entropy networks for context-dependent computations 2026-05-25 physics.stat-mech;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.25607 False False 2605.25875 The impact of behavioral homophily and conformity on epidemic spreading in networks with large groups 2026-05-25 physics.app-ph;physics.soc-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2605.25875 False False 2605.26183 What Molecular Structure Cannot Tell Us: A Taxonomy of Explainability Gaps in GNN-Based Drug Toxicity Prediction 2026-05-25 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.26183 False False 2605.26192 Co-folding model guided by structural proteomics 2026-05-25 cs.AI;cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2605.26192 False False 2605.26183 What Molecular Structure Cannot Tell Us: A Taxonomy of Explainability Gaps in GNN-Based Drug Toxicity Prediction 2026-05-25 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.26183 False False 2605.26192 Co-folding model guided by structural proteomics 2026-05-25 cs.AI;cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2605.26192 False False 2605.26183 What Molecular Structure Cannot Tell Us: A Taxonomy of Explainability Gaps in GNN-Based Drug Toxicity Prediction 2026-05-25 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.26183 False False 2605.26183 What Molecular Structure Cannot Tell Us: A Taxonomy of Explainability Gaps in GNN-Based Drug Toxicity Prediction 2026-05-25 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.26183 False False 2606.06509 Which Anatomy Matters Under Limited Labels? A Data-Efficient Anatomy-Aware Benchmark for Cardiac Pathology Prediction 2026-05-25 cs.AI;cs.LG;eess.IV;q-bio.TO q-bio.TO https://arxiv.org/abs/2606.06509 False False 2606.06509 Which Anatomy Matters Under Limited Labels? A Data-Efficient Anatomy-Aware Benchmark for Cardiac Pathology Prediction 2026-05-25 cs.AI;cs.LG;eess.IV;q-bio.TO q-bio.TO https://arxiv.org/abs/2606.06509 False False 2606.06509 Which Anatomy Matters Under Limited Labels? A Data-Efficient Anatomy-Aware Benchmark for Cardiac Pathology Prediction 2026-05-25 cs.AI;cs.LG;eess.IV;q-bio.TO q-bio.TO https://arxiv.org/abs/2606.06509 False False 2606.07562 The Montparnasse Algorithm for RNA Design 2026-05-25 cs.AI;q-bio.BM q-bio.BM https://arxiv.org/abs/2606.07562 False False 2606.07567 SurfDesign: Effective Protein Design on Molecular Surfaces 2026-05-25 cs.AI;cs.CE;q-bio.BM q-bio.BM https://arxiv.org/abs/2606.07567 False False 2605.25607 Balancing structure and randomness: maximum entropy networks for context-dependent computations 2026-05-25 physics.stat-mech;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.25607 False False 2605.25607 Balancing structure and randomness: maximum entropy networks for context-dependent computations 2026-05-25 physics.stat-mech;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.25607 False False 2605.24913 Explainable Multi-Task Retinal Imaging Reveals Microvascular Signals for Systemic Risk Stratification in Type 2 Diabetes: A Pilot Study 2026-05-24 cs.AI;eess.IV;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.24913 False False 2605.24999 Interpretation, Learning, and Empathy as One Constraint: A Residual-Adequacy Architecture with Accountable Abstention 2026-05-24 cs.AI;cs.MA;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.24999 False False 2605.25050 Multimodality Stacking with Blockwise missing values and application to the PIONeeR biomarkers study for prediction of resistance to immunotherapy 2026-05-24 cs.LG;q-bio.QM;stat.AP;stat.ML q-bio.QM https://arxiv.org/abs/2605.25050 False False 2605.25079 Trans-dimensional Bayesian model averaging for $^{13}$C-based metabolic flux analysis: Evidence-based flux inference under structural model uncertainty 2026-05-24 q-bio.QM q-bio.QM https://arxiv.org/abs/2605.25079 False False 2605.25155 Automated multi-dataset INST $^{13}$C metabolic flux analysis at microliter scale reveals robust fluxes but variable metabolite pools in $Corynebacterium~glutamicum$ 2026-05-24 q-bio.QM q-bio.QM https://arxiv.org/abs/2605.25155 False False 2605.25174 Growing a Neural Network in Breadth, Depth, and Time 2026-05-24 cs.LG;cs.NE;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.25174 False False 2605.25214 A Quantum-Analogue Formalism for Modeling Supraliminal Information Processing 2026-05-24 q-bio.NC q-bio.NC https://arxiv.org/abs/2605.25214 False False 2605.25224 Multi-Objective Optimisation with Oscillatory Dynamics in Spontaneous and Decision Spiking Neural Networks 2026-05-24 q-bio.NC q-bio.NC https://arxiv.org/abs/2605.25224 False False 2605.25242 C3P: Contrastive promoter-protein pretraining yields representations capturing bacterial gene regulation 2026-05-24 q-bio.GN q-bio.GN https://arxiv.org/abs/2605.25242 False False 2605.25278 Exact Variance and Fano Factor for Arbitrary Level Crossings in Stationary Gaussian Processes 2026-05-24 eess.SP;math.PR;physics.stat-mech;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.25278 False False 2605.25295 Accelerated Simulation Algorithms for Extreme First-Passage Problems with General Emission Profiles 2026-05-24 math.PR;physics.stat-mech;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.25295 False False 2605.24913 Explainable Multi-Task Retinal Imaging Reveals Microvascular Signals for Systemic Risk Stratification in Type 2 Diabetes: A Pilot Study 2026-05-24 cs.AI;eess.IV;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.24913 False False 2605.24999 Interpretation, Learning, and Empathy as One Constraint: A Residual-Adequacy Architecture with Accountable Abstention 2026-05-24 cs.AI;cs.MA;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.24999 False False 2605.25050 Multimodality Stacking with Blockwise missing values and application to the PIONeeR biomarkers study for prediction of resistance to immunotherapy 2026-05-24 cs.LG;q-bio.QM;stat.AP;stat.ML q-bio.QM https://arxiv.org/abs/2605.25050 False False 2605.25079 Trans-dimensional Bayesian model averaging for $^{13}$C-based metabolic flux analysis: Evidence-based flux inference under structural model uncertainty 2026-05-24 q-bio.QM q-bio.QM https://arxiv.org/abs/2605.25079 False False 2605.25155 Automated multi-dataset INST $^{13}$C metabolic flux analysis at microliter scale reveals robust fluxes but variable metabolite pools in $Corynebacterium~glutamicum$ 2026-05-24 q-bio.QM q-bio.QM https://arxiv.org/abs/2605.25155 False False 2605.25174 Growing a Neural Network in Breadth, Depth, and Time 2026-05-24 cs.LG;cs.NE;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.25174 False False 2605.25214 A Quantum-Analogue Formalism for Modeling Supraliminal Information Processing 2026-05-24 q-bio.NC q-bio.NC https://arxiv.org/abs/2605.25214 False False 2605.25224 Multi-Objective Optimisation with Oscillatory Dynamics in Spontaneous and Decision Spiking Neural Networks 2026-05-24 q-bio.NC q-bio.NC https://arxiv.org/abs/2605.25224 False False 2605.25242 C3P: Contrastive promoter-protein pretraining yields representations capturing bacterial gene regulation 2026-05-24 q-bio.GN q-bio.GN https://arxiv.org/abs/2605.25242 False False 2605.25278 Exact Variance and Fano Factor for Arbitrary Level Crossings in Stationary Gaussian Processes 2026-05-24 eess.SP;math.PR;physics.stat-mech;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.25278 False False 2605.25295 Accelerated Simulation Algorithms for Extreme First-Passage Problems with General Emission Profiles 2026-05-24 math.PR;physics.stat-mech;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.25295 False False 2605.25079 Trans-dimensional Bayesian model averaging for $^{13}$C-based metabolic flux analysis: Evidence-based flux inference under structural model uncertainty 2026-05-24 q-bio.QM;stat.AP;stat.CO;stat.ME q-bio.QM https://arxiv.org/abs/2605.25079 False False 2605.25079 Trans-dimensional Bayesian model averaging for $^{13}$C-based metabolic flux analysis: Evidence-based flux inference under structural model uncertainty 2026-05-24 q-bio.QM;stat.AP;stat.CO;stat.ME q-bio.QM https://arxiv.org/abs/2605.25079 False False 2605.25050 Multimodality Stacking with Blockwise missing values and application to the PIONeeR biomarkers study for prediction of resistance to immunotherapy 2026-05-24 cs.LG;q-bio.QM;stat.AP;stat.ML q-bio.QM https://arxiv.org/abs/2605.25050 False False 2605.25050 Multimodality Stacking with Blockwise missing values and application to the PIONeeR biomarkers study for prediction of resistance to immunotherapy 2026-05-24 cs.LG;q-bio.QM;stat.AP;stat.ML q-bio.QM https://arxiv.org/abs/2605.25050 False False 2605.24370 GEESE: Genotype-aware End-to-End Spatio-temporal Embedding for Behavioral Phenotyping 2026-05-23 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.24370 False False 2605.24489 TIGER: Text-Informed Generalized Enzyme-Reaction Retrieval 2026-05-23 cs.AI;q-bio.BM q-bio.BM https://arxiv.org/abs/2605.24489 False False 2605.24520 AnnotateMissense: a genome-wide annotation and benchmarking framework for missense pathogenicity prediction 2026-05-23 cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2605.24520 False False 2605.24523 MindAlign: Bridging EEG, Vision, and Language for Zero-Shot Visual Decoding 2026-05-23 cs.CL;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.24523 False False 2605.24524 What Are We Actually Decoding? Source Attribution for Non-Invasive Brain-to-Language Retrieval 2026-05-23 cs.CL;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.24524 False False 2605.24585 Word Class Representations Spontaneously Emerge from Successor Representations Trained on Natural Language 2026-05-23 cs.CL;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.24585 False False 2605.24706 MetaboKG: An Analysis-centric Knowledge Graph Framework for Untargeted Metabolomics 2026-05-23 cs.DB;q-bio.BM;q-bio.MN q-bio.BM https://arxiv.org/abs/2605.24706 False False 2605.24370 GEESE: Genotype-aware End-to-End Spatio-temporal Embedding for Behavioral Phenotyping 2026-05-23 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.24370 False False 2605.24489 TIGER: Text-Informed Generalized Enzyme-Reaction Retrieval 2026-05-23 cs.AI;q-bio.BM q-bio.BM https://arxiv.org/abs/2605.24489 False False 2605.24520 AnnotateMissense: a genome-wide annotation and benchmarking framework for missense pathogenicity prediction 2026-05-23 cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2605.24520 False False 2605.24523 MindAlign: Bridging EEG, Vision, and Language for Zero-Shot Visual Decoding 2026-05-23 cs.CL;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.24523 False False 2605.24524 What Are We Actually Decoding? Source Attribution for Non-Invasive Brain-to-Language Retrieval 2026-05-23 cs.CL;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.24524 False False 2605.24585 Word Class Representations Spontaneously Emerge from Successor Representations Trained on Natural Language 2026-05-23 cs.CL;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.24585 False False 2605.24706 MetaboKG: An Analysis-centric Knowledge Graph Framework for Untargeted Metabolomics 2026-05-23 cs.DB;q-bio.BM;q-bio.MN q-bio.BM https://arxiv.org/abs/2605.24706 False False 2606.05206 Ontology-constrained multi-LLM scoring of hypothesis support in the predictive processing literature 2026-05-23 cs.AI;q-bio.NC;stat.AP q-bio.NC https://arxiv.org/abs/2606.05206 False False 2606.05206 Ontology-constrained multi-LLM scoring of hypothesis support in the predictive processing literature 2026-05-23 cs.AI;q-bio.NC;stat.AP q-bio.NC https://arxiv.org/abs/2606.05206 False False 2605.24370 GEESE: Genotype-aware End-to-End Spatio-temporal Embedding for Behavioral Phenotyping 2026-05-23 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.24370 False False 2605.24370 GEESE: Genotype-aware End-to-End Spatio-temporal Embedding for Behavioral Phenotyping 2026-05-23 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.24370 False False 2605.23111 Contextual Role Modulates Object Representational Geometry in the Human Brain 2026-05-22 q-bio.NC q-bio.NC https://arxiv.org/abs/2605.23111 False False 2605.23122 Beyond Neural Activity Prediction: Probing Latent Representations in Mouse V1 Digital Twins 2026-05-22 q-bio.NC q-bio.NC https://arxiv.org/abs/2605.23122 False False 2605.23126 Asymptotic Counting of Binary Phylogenetic Networks 2026-05-22 q-bio.PE q-bio.PE https://arxiv.org/abs/2605.23126 False False 2605.23161 Abstract relational structures in models of biology 2026-05-22 q-bio.QM q-bio.QM https://arxiv.org/abs/2605.23161 False False 2605.23164 Tread lightly interpreting group differences in genetic risk 2026-05-22 q-bio.PE q-bio.PE https://arxiv.org/abs/2605.23164 False False 2605.23169 PRAXIS: Case-distilled and code-verified AI agents for biological research 2026-05-22 q-bio.QM q-bio.QM https://arxiv.org/abs/2605.23169 False False 2605.23521 Population-Specific Genetic and Non-Genetic Influences on Sleep Traits and Health Outcomes 2026-05-22 q-bio.GN q-bio.GN https://arxiv.org/abs/2605.23521 False False 2605.23669 Geometric Origin of Exact Mean-Field Reductions: M{ö}bius Symmetry and the Lorentzian Ansatz 2026-05-22 physics.bio-ph;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.23669 False False 2605.23745 On the Design of an Analog-Dyadic Converter CRN 2026-05-22 q-bio.QM q-bio.QM https://arxiv.org/abs/2605.23745 False False 2605.23877 Particle Image Velocimetry of 3D printed vascular fluidic phantom devices 2026-05-22 physics.flu-dyn;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.23877 False False 2605.23111 Contextual Role Modulates Object Representational Geometry in the Human Brain 2026-05-22 q-bio.NC q-bio.NC https://arxiv.org/abs/2605.23111 False False 2605.23122 Beyond Neural Activity Prediction: Probing Latent Representations in Mouse V1 Digital Twins 2026-05-22 q-bio.NC q-bio.NC https://arxiv.org/abs/2605.23122 False False 2605.23126 Asymptotic Counting of Binary Phylogenetic Networks 2026-05-22 q-bio.PE q-bio.PE https://arxiv.org/abs/2605.23126 False False 2605.23161 Abstract relational structures in models of biology 2026-05-22 q-bio.QM q-bio.QM https://arxiv.org/abs/2605.23161 False False 2605.23164 Tread lightly interpreting group differences in genetic risk 2026-05-22 q-bio.PE q-bio.PE https://arxiv.org/abs/2605.23164 False False 2605.23169 PRAXIS: Case-distilled and code-verified AI agents for biological research 2026-05-22 q-bio.QM q-bio.QM https://arxiv.org/abs/2605.23169 False False 2605.23521 Population-Specific Genetic and Non-Genetic Influences on Sleep Traits and Health Outcomes 2026-05-22 q-bio.GN q-bio.GN https://arxiv.org/abs/2605.23521 False False 2605.23669 Geometric Origin of Exact Mean-Field Reductions: M{ö}bius Symmetry and the Lorentzian Ansatz 2026-05-22 physics.bio-ph;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.23669 False False 2605.23745 On the Design of an Analog-Dyadic Converter CRN 2026-05-22 q-bio.QM q-bio.QM https://arxiv.org/abs/2605.23745 False False 2605.23877 Particle Image Velocimetry of 3D printed vascular fluidic phantom devices 2026-05-22 physics.flu-dyn;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.23877 False False 2605.24135 Using timescale as a state coordinate reveals the metastable geometry of behavior 2026-05-22 q-bio.QM q-bio.QM https://arxiv.org/abs/2605.24135 False False 2605.24170 Learning dynamical systems with biochemically informed neural ordinary differential equations 2026-05-22 cs.LG;math.DS;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.24170 False False 2605.24179 7 Tesla Quantitative MRI and Machine Learning for Exploratory Motor Subtype Stratification and Diagnosis in Parkinson's Disease 2026-05-22 eess.IV;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.24179 False False 2605.24135 Using timescale as a state coordinate reveals the metastable geometry of behavior 2026-05-22 q-bio.QM q-bio.QM https://arxiv.org/abs/2605.24135 False False 2605.24170 Learning dynamical systems with biochemically informed neural ordinary differential equations 2026-05-22 cs.LG;math.DS;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.24170 False False 2605.24179 7 Tesla Quantitative MRI and Machine Learning for Exploratory Motor Subtype Stratification and Diagnosis in Parkinson's Disease 2026-05-22 eess.IV;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.24179 False False 2605.23111 Contextual Role Modulates Object Representational Geometry in the Human Brain 2026-05-22 q-bio.NC q-bio.NC https://arxiv.org/abs/2605.23111 False False 2605.23111 Contextual Role Modulates Object Representational Geometry in the Human Brain 2026-05-22 q-bio.NC q-bio.NC https://arxiv.org/abs/2605.23111 False False 2605.23122 Beyond Neural Activity Prediction: Probing Latent Representations in Mouse V1 Digital Twins 2026-05-22 q-bio.NC q-bio.NC https://arxiv.org/abs/2605.23122 False False 2605.23122 Beyond Neural Activity Prediction: Probing Latent Representations in Mouse V1 Digital Twins 2026-05-22 q-bio.NC q-bio.NC https://arxiv.org/abs/2605.23122 False False 2606.05196 Uniform sampling of canalizing Boolean functions reveals hidden biases in Boolean network analysis 2026-05-22 math.CO;q-bio.MN q-bio.MN https://arxiv.org/abs/2606.05196 False False 2606.05198 An accurate nucleic acid-small molecule docking framework via geometric deep learning with large-scale pretraining 2026-05-22 cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2606.05198 False False 2605.23111 Contextual Role Modulates Object Representational Geometry in the Human Brain 2026-05-22 q-bio.NC q-bio.NC https://arxiv.org/abs/2605.23111 False False 2606.05196 Uniform sampling of canalizing Boolean functions reveals hidden biases in Boolean network analysis 2026-05-22 math.CO;q-bio.MN q-bio.MN https://arxiv.org/abs/2606.05196 False False 2606.05198 An accurate nucleic acid-small molecule docking framework via geometric deep learning with large-scale pretraining 2026-05-22 cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2606.05198 False False 2605.23111 Contextual Role Modulates Object Representational Geometry in the Human Brain 2026-05-22 q-bio.NC q-bio.NC https://arxiv.org/abs/2605.23111 False False 2605.23169 PRAXIS: Case-distilled and code-verified AI agents for biological research 2026-05-22 q-bio.QM q-bio.QM https://arxiv.org/abs/2605.23169 False False 2605.23111 Contextual Role Modulates Object Representational Geometry in the Human Brain 2026-05-22 q-bio.NC q-bio.NC https://arxiv.org/abs/2605.23111 False False 2605.23111 Contextual Role Modulates Object Representational Geometry in the Human Brain 2026-05-22 q-bio.NC q-bio.NC https://arxiv.org/abs/2605.23111 False False 2605.23126 Asymptotic Counting of Binary Phylogenetic Networks 2026-05-22 q-bio.PE q-bio.PE https://arxiv.org/abs/2605.23126 False False 2605.23126 Asymptotic Counting of Binary Phylogenetic Networks 2026-05-22 q-bio.PE q-bio.PE https://arxiv.org/abs/2605.23126 False False 2606.05196 Correcting hidden sampling biases in null models of canalizing Boolean networks 2026-05-22 math.CO;q-bio.MN q-bio.MN https://arxiv.org/abs/2606.05196 False False 2605.21859 PhylaFlow: Hybrid Flow Matching in Billera-Holmes-Vogtmann Tree Space for Phylogenetic Inference 2026-05-21 cs.LG;q-bio.PE;q-bio.QM q-bio.PE https://arxiv.org/abs/2605.21859 False False 2605.21945 A Characterization of Level-k Realizability for Clustering Systems 2026-05-21 q-bio.MN q-bio.MN https://arxiv.org/abs/2605.21945 False False 2605.22009 SDFStent: Real-time interactive virtual stenting via SDF deformation fields 2026-05-21 cs.CE;physics.med-ph;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.22009 False False 2605.22075 Can Breath Biomarkers Causally Influence Blood Glucose? Investigating VOC-Mediated Modulation in Diabetes 2026-05-21 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.22075 False False 2605.22133 Atom-level Protein Representation Learning Improves Protein Structure Prediction 2026-05-21 cs.AI;q-bio.BM q-bio.BM https://arxiv.org/abs/2605.22133 False False 2605.22352 Spatiotemporal dynamics and ecological risk factors of highly pathogenic avian influenza A(H5N1) in Canadian wildlife: A One Health surveillance analysis 2026-05-21 math.ST;q-bio.PE;stat.AP;stat.CO;stat.ME;stat.TH q-bio.PE https://arxiv.org/abs/2605.22352 False False 2605.22401 Cross-Species RSA Reveals Conserved Early Visual Alignment but Divergent Higher-Area Rankings Across Human fMRI and Macaque Electrophysiology 2026-05-21 cs.LG;cs.NE;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.22401 False False 2605.22523 Learning sequence timing and control of replay speed in networks of spiking neurons 2026-05-21 q-bio.NC q-bio.NC https://arxiv.org/abs/2605.22523 False False 2605.22588 Changes in behaviour when adherers to an intervention experience a different epidemic than non-adherers 2026-05-21 q-bio.PE q-bio.PE https://arxiv.org/abs/2605.22588 False False 2605.22598 Efficient coding under constraint drives neural systems towards criticality and sloppiness 2026-05-21 q-bio.NC q-bio.NC https://arxiv.org/abs/2605.22598 False False 2605.22665 Fitness Inference in Presence of Migrations between Coupled Evolving Populations 2026-05-21 q-bio.PE q-bio.PE https://arxiv.org/abs/2605.22665 False False 2605.22755 Assessing global drivers of forest transpiration using clustered machine learning models 2026-05-21 q-bio.QM q-bio.QM https://arxiv.org/abs/2605.22755 False False 2605.21859 PhylaFlow: Hybrid Flow Matching in Billera-Holmes-Vogtmann Tree Space for Phylogenetic Inference 2026-05-21 cs.LG;q-bio.PE;q-bio.QM q-bio.PE https://arxiv.org/abs/2605.21859 False False 2605.21945 A Characterization of Level-k Realizability for Clustering Systems 2026-05-21 q-bio.MN q-bio.MN https://arxiv.org/abs/2605.21945 False False 2605.22009 SDFStent: Real-time interactive virtual stenting via SDF deformation fields 2026-05-21 cs.CE;physics.med-ph;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.22009 False False 2605.22075 Can Breath Biomarkers Causally Influence Blood Glucose? Investigating VOC-Mediated Modulation in Diabetes 2026-05-21 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.22075 False False 2605.22133 Atom-level Protein Representation Learning Improves Protein Structure Prediction 2026-05-21 cs.AI;q-bio.BM q-bio.BM https://arxiv.org/abs/2605.22133 False False 2605.22352 Spatiotemporal dynamics and ecological risk factors of highly pathogenic avian influenza A(H5N1) in Canadian wildlife: A One Health surveillance analysis 2026-05-21 math.ST;q-bio.PE;stat.AP;stat.CO;stat.ME;stat.TH q-bio.PE https://arxiv.org/abs/2605.22352 False False 2605.22401 Cross-Species RSA Reveals Conserved Early Visual Alignment but Divergent Higher-Area Rankings Across Human fMRI and Macaque Electrophysiology 2026-05-21 cs.LG;cs.NE;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.22401 False False 2605.22523 Learning sequence timing and control of replay speed in networks of spiking neurons 2026-05-21 q-bio.NC q-bio.NC https://arxiv.org/abs/2605.22523 False False 2605.22588 Changes in behaviour when adherers to an intervention experience a different epidemic than non-adherers 2026-05-21 q-bio.PE q-bio.PE https://arxiv.org/abs/2605.22588 False False 2605.22598 Efficient coding under constraint drives neural systems towards criticality and sloppiness 2026-05-21 q-bio.NC q-bio.NC https://arxiv.org/abs/2605.22598 False False 2605.22665 Fitness Inference in Presence of Migrations between Coupled Evolving Populations 2026-05-21 q-bio.PE q-bio.PE https://arxiv.org/abs/2605.22665 False False 2605.22755 Assessing global drivers of forest transpiration using clustered machine learning models 2026-05-21 q-bio.QM q-bio.QM https://arxiv.org/abs/2605.22755 False False 2605.22133 Atom-level Protein Representation Learning Improves Protein Structure Prediction 2026-05-21 cs.AI;q-bio.BM q-bio.BM https://arxiv.org/abs/2605.22133 False False 2605.22899 ROI Extraction in Thermographic Breast Images Using Genetic Algorithms 2026-05-21 eess.IV;q-bio.TO q-bio.TO https://arxiv.org/abs/2605.22899 False False 2605.22954 FederatedRSF : Federated Random Survival Forests for Partially Overlapping Medical Data 2026-05-21 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.22954 False False 2605.22962 GazeBehavior Annotation Toolkit (GBAT): AI-powered toolkit for automatic annotation of egocentric eye-tracking and video data of child-caregiver interaction 2026-05-21 cs.CE;cs.CV;cs.HC;cs.SE;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.22962 False False 2605.22968 Uncertainty-aware classification and triage of structural heart disease using electrocardiography and echocardiography metrics 2026-05-21 cs.LG;q-bio.QM;stat.ML q-bio.QM https://arxiv.org/abs/2605.22968 False False 2605.22988 Active Sensing Subserves Task-Level Control 2026-05-21 cs.LG;cs.RO;cs.SY;eess.SY;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.22988 False False 2605.23012 Integrating Cognitive Load and Embodied Cognition Theories Through Representations as Multi-Scale Attractors 2026-05-21 q-bio.NC q-bio.NC https://arxiv.org/abs/2605.23012 False False 2605.23032 Brain-LLM Alignment Tracks Training Data, Not Typology 2026-05-21 cs.AI;cs.CL;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.23032 False False 2605.23035 Sparse Autoencoders Map Brain-LLM Alignment onto Cortical Semantic Topography 2026-05-21 cs.AI;cs.CL;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.23035 False False 2605.22133 Atom-level Protein Representation Learning Improves Protein Structure Prediction 2026-05-21 cs.AI;q-bio.BM q-bio.BM https://arxiv.org/abs/2605.22133 False False 2605.22899 ROI Extraction in Thermographic Breast Images Using Genetic Algorithms 2026-05-21 eess.IV;q-bio.TO q-bio.TO https://arxiv.org/abs/2605.22899 False False 2605.22954 FederatedRSF : Federated Random Survival Forests for Partially Overlapping Medical Data 2026-05-21 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.22954 False False 2605.22962 GazeBehavior Annotation Toolkit (GBAT): AI-powered toolkit for automatic annotation of egocentric eye-tracking and video data of child-caregiver interaction 2026-05-21 cs.CE;cs.CV;cs.HC;cs.SE;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.22962 False False 2605.22968 Uncertainty-aware classification and triage of structural heart disease using electrocardiography and echocardiography metrics 2026-05-21 cs.LG;q-bio.QM;stat.ML q-bio.QM https://arxiv.org/abs/2605.22968 False False 2605.22988 Active Sensing Subserves Task-Level Control 2026-05-21 cs.LG;cs.RO;cs.SY;eess.SY;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.22988 False False 2605.23012 Integrating Cognitive Load and Embodied Cognition Theories Through Representations as Multi-Scale Attractors 2026-05-21 q-bio.NC q-bio.NC https://arxiv.org/abs/2605.23012 False False 2605.23032 Brain-LLM Alignment Tracks Training Data, Not Typology 2026-05-21 cs.AI;cs.CL;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.23032 False False 2605.23035 Sparse Autoencoders Map Brain-LLM Alignment onto Cortical Semantic Topography 2026-05-21 cs.AI;cs.CL;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.23035 False False 2605.24034 WTKO-CNN: Deep Learning Reveals Sequence Motifs Distinguishing Wild-Type and Knockout ATAC-seq Peaks 2026-05-21 cs.AI;q-bio.GN q-bio.GN https://arxiv.org/abs/2605.24034 False False 2605.24034 WTKO-CNN: Deep Learning Reveals Sequence Motifs Distinguishing Wild-Type and Knockout ATAC-seq Peaks 2026-05-21 cs.AI;q-bio.GN q-bio.GN https://arxiv.org/abs/2605.24034 False False 2605.22133 Atom-level Protein Representation Learning Improves Protein Structure Prediction 2026-05-21 cs.AI;q-bio.BM q-bio.BM https://arxiv.org/abs/2605.22133 False False 2605.22133 Atom-level Protein Representation Learning Improves Protein Structure Prediction 2026-05-21 cs.AI;q-bio.BM q-bio.BM https://arxiv.org/abs/2605.22133 False False 2605.28862 Molecular Lead Optimization via Agentic Tool Planning 2026-05-21 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.28862 False False 2605.28862 Molecular Lead Optimization via Agentic Tool Planning 2026-05-21 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.28862 False False 2606.02591 The vulnerable male brain: Men's spatial abilities are condition-dependent, sexually selected traits 2026-05-21 q-bio.NC;q-bio.PE q-bio.NC https://arxiv.org/abs/2606.02591 False False 2605.22598 Efficient coding under constraint drives neural systems towards criticality and sloppiness 2026-05-21 q-bio.NC q-bio.NC https://arxiv.org/abs/2605.22598 False False 2605.22598 Efficient coding under constraint drives neural systems towards criticality and sloppiness 2026-05-21 q-bio.NC q-bio.NC https://arxiv.org/abs/2605.22598 False False 2605.21945 Minimum Network Level Forced by Hardwired Cluster Data 2026-05-21 q-bio.MN q-bio.MN https://arxiv.org/abs/2605.21945 False False 2605.21945 Minimum Network Level Forced by Hardwired Cluster Data 2026-05-21 q-bio.MN q-bio.MN https://arxiv.org/abs/2605.21945 False False 2605.20692 Inferring infectiousness: a joint model of the within-host viral kinetics of SARS-CoV-2 2026-05-20 q-bio.PE;q-bio.QM;stat.AP;stat.ME q-bio.PE https://arxiv.org/abs/2605.20692 False False 2605.20747 Multi-Modal Machine Learning for Population- and Subject-Specific lncRNA-Type 2 Diabetes Association Analysis 2026-05-20 q-bio.GN q-bio.GN https://arxiv.org/abs/2605.20747 False False 2605.20885 Training distribution determines the ceiling of drug-blind cancer sensitivity prediction 2026-05-20 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.20885 False False 2605.20989 Modeling Temporal scRNA-seq Data with Latent Gaussian Process and Optimal Transport 2026-05-20 cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2605.20989 False False 2605.21129 How hate spreads online and why it returns: Re-entrant phases driven by collective behavior 2026-05-20 econ.GN;physics.AO;physics.soc-ph;q-bio.PE;q-fin.EC q-bio.PE https://arxiv.org/abs/2605.21129 False False 2605.21324 Stimulus symmetries can confound representational similarity analyses 2026-05-20 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.21324 False False 2605.21356 A simple model of co-emergence of grid and place fields 2026-05-20 q-bio.NC q-bio.NC https://arxiv.org/abs/2605.21356 False False 2605.21420 HiRes: Inspectable Precedent Memory for Reaction Condition Recommendation 2026-05-20 cs.AI;cs.LG;q-bio.MN q-bio.MN https://arxiv.org/abs/2605.21420 False False 2605.21454 ProtoPathway: Biologically Structured Prototype-Pathway Fusion for Multimodal Cancer Survival Prediction 2026-05-20 cs.CV;q-bio.QM;q-bio.TO q-bio.QM https://arxiv.org/abs/2605.21454 False False 2605.20692 Inferring infectiousness: a joint model of the within-host viral kinetics of SARS-CoV-2 2026-05-20 q-bio.PE;q-bio.QM;stat.AP;stat.ME q-bio.PE https://arxiv.org/abs/2605.20692 False False 2605.20885 Training distribution determines the ceiling of drug-blind cancer sensitivity prediction 2026-05-20 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.20885 False False 2605.20989 Modeling Temporal scRNA-seq Data with Latent Gaussian Process and Optimal Transport 2026-05-20 cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2605.20989 False False 2605.21129 How hate spreads online and why it returns: Re-entrant phases driven by collective behavior 2026-05-20 econ.GN;physics.AO;physics.soc-ph;q-bio.PE;q-fin.EC q-bio.PE https://arxiv.org/abs/2605.21129 False False 2605.21324 Stimulus symmetries can confound representational similarity analyses 2026-05-20 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.21324 False False 2605.21356 A simple model of co-emergence of grid and place fields 2026-05-20 q-bio.NC q-bio.NC https://arxiv.org/abs/2605.21356 False False 2605.21420 HiRes: Inspectable Precedent Memory for Reaction Condition Recommendation 2026-05-20 cs.AI;cs.LG;q-bio.MN q-bio.MN https://arxiv.org/abs/2605.21420 False False 2605.21454 ProtoPathway: Biologically Structured Prototype-Pathway Fusion for Multimodal Cancer Survival Prediction 2026-05-20 cs.CV;q-bio.QM;q-bio.TO q-bio.QM https://arxiv.org/abs/2605.21454 False False 2605.21617 $\textit{BlockFormer}$ : Transformer-based inference from interaction maps 2026-05-20 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.21617 False False 2605.21634 bioETH-PRS: Confidential Polygenic Risk Scoring without a Trusted Evaluator via Fully Homomorphic Encryption on a Programmable Blockchain 2026-05-20 q-bio.GN q-bio.GN https://arxiv.org/abs/2605.21634 False False 2605.21725 Regularizing and Normalizing DAGs and Phylogenetic Networks 2026-05-20 math.CO;q-bio.PE q-bio.PE https://arxiv.org/abs/2605.21725 False False 2605.20747 Multi-Modal Machine Learning for Population- and Subject-Specific lncRNA-Type 2 Diabetes Association Analysis 2026-05-20 cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2605.20747 False False 2605.21787 Drivers of Transient Dynamics and Persistence in Dengue: Insights from Sensitivity and Stochastic Modeling 2026-05-20 q-bio.PE q-bio.PE https://arxiv.org/abs/2605.21787 False False 2605.20747 Multi-Modal Machine Learning for Population- and Subject-Specific lncRNA-Type 2 Diabetes Association Analysis 2026-05-20 cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2605.20747 False False 2605.21617 $\textit{BlockFormer}$ : Transformer-based inference from interaction maps 2026-05-20 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.21617 False False 2605.21634 bioETH-PRS: Confidential Polygenic Risk Scoring without a Trusted Evaluator via Fully Homomorphic Encryption on a Programmable Blockchain 2026-05-20 q-bio.GN q-bio.GN https://arxiv.org/abs/2605.21634 False False 2605.21725 Regularizing and Normalizing DAGs and Phylogenetic Networks 2026-05-20 math.CO;q-bio.PE q-bio.PE https://arxiv.org/abs/2605.21725 False False 2605.21787 Drivers of Transient Dynamics and Persistence in Dengue: Insights from Sensitivity and Stochastic Modeling 2026-05-20 q-bio.PE q-bio.PE https://arxiv.org/abs/2605.21787 False False 2605.20747 Multi-Modal Machine Learning for Population- and Subject-Specific lncRNA-Type 2 Diabetes Association Analysis 2026-05-20 cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2605.20747 False False 2605.20747 Multi-Modal Machine Learning for Population- and Subject-Specific lncRNA-Type 2 Diabetes Association Analysis 2026-05-20 cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2605.20747 False False 2605.21617 $\textit{BlockFormer}$ : Transformer-based inference from interaction maps 2026-05-20 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.21617 False False 2605.21617 $\textit{BlockFormer}$ : Transformer-based inference from interaction maps 2026-05-20 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.21617 False False 2605.19252 Elemental Stoichiometry as an Ecological Biosignature with Applications to Life Detection 2026-05-19 physics.EP;q-bio.BM;q-bio.MN q-bio.BM https://arxiv.org/abs/2605.19252 False False 2605.19333 Deep-time consistency in proteome elemental composition across cellular and viral life 2026-05-19 q-bio.BM;q-bio.PE q-bio.BM https://arxiv.org/abs/2605.19333 False False 2605.19352 Brain alignment of reasoning and action representations from vision-language and action models during naturalistic gameplay 2026-05-19 cs.AI;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.19352 False False 2605.19579 TACK: A statistical evaluation of degradation activity on a novel TArgeting Chimeras Knowledge dataset 2026-05-19 q-bio.QM q-bio.QM https://arxiv.org/abs/2605.19579 False False 2605.19646 BCI-sift: An automated feature selection toolbox for Brain Computer Interface applications 2026-05-19 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.19646 False False 2605.19677 Agentic Discovery of Cryomicroneedle Formulations 2026-05-19 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.19677 False False 2605.19789 Charting an embryological path to cancer cure: A discussion of disease hallmarks 2026-05-19 q-bio.TO q-bio.TO https://arxiv.org/abs/2605.19789 False False 2605.19816 Performance of low vision individuals when selecting a target with head-pointing in virtual reality 2026-05-19 q-bio.NC q-bio.NC https://arxiv.org/abs/2605.19816 False False 2605.19902 Hierarchical Contrastive Learning for Multi-Domain Protein-Ligand Binding 2026-05-19 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.19902 False False 2605.19962 Computing the Arc-Deletion Distance to Orchard Networks is NP-hard 2026-05-19 cs.DM;q-bio.PE q-bio.PE https://arxiv.org/abs/2605.19962 False False 2605.20103 Face morphometric profiles of groups as early markers for certain diseases? 2026-05-19 q-bio.PE q-bio.PE https://arxiv.org/abs/2605.20103 False False 2605.20127 Beyond Prediction Accuracy: Target-Space Recovery Profiles for Evaluating Model-Brain Alignment 2026-05-19 cs.AI;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.20127 False False 2605.19252 Elemental Stoichiometry as an Ecological Biosignature with Applications to Life Detection 2026-05-19 physics.EP;q-bio.BM;q-bio.MN q-bio.BM https://arxiv.org/abs/2605.19252 False False 2605.19333 Deep-time consistency in proteome elemental composition across cellular and viral life 2026-05-19 q-bio.BM;q-bio.PE q-bio.BM https://arxiv.org/abs/2605.19333 False False 2605.19352 Brain alignment of reasoning and action representations from vision-language and action models during naturalistic gameplay 2026-05-19 cs.AI;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.19352 False False 2605.19579 TACK: A statistical evaluation of degradation activity on a novel TArgeting Chimeras Knowledge dataset 2026-05-19 q-bio.QM q-bio.QM https://arxiv.org/abs/2605.19579 False False 2605.19646 BCI-sift: An automated feature selection toolbox for Brain Computer Interface applications 2026-05-19 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.19646 False False 2605.19677 Agentic Discovery of Cryomicroneedle Formulations 2026-05-19 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.19677 False False 2605.19789 Charting an embryological path to cancer cure: A discussion of disease hallmarks 2026-05-19 q-bio.TO q-bio.TO https://arxiv.org/abs/2605.19789 False False 2605.19816 Performance of low vision individuals when selecting a target with head-pointing in virtual reality 2026-05-19 q-bio.NC q-bio.NC https://arxiv.org/abs/2605.19816 False False 2605.19902 Hierarchical Contrastive Learning for Multi-Domain Protein-Ligand Binding 2026-05-19 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.19902 False False 2605.19962 Computing the Arc-Deletion Distance to Orchard Networks is NP-hard 2026-05-19 cs.DM;q-bio.PE q-bio.PE https://arxiv.org/abs/2605.19962 False False 2605.20103 Face morphometric profiles of groups as early markers for certain diseases? 2026-05-19 q-bio.PE q-bio.PE https://arxiv.org/abs/2605.20103 False False 2605.20127 Beyond Prediction Accuracy: Target-Space Recovery Profiles for Evaluating Model-Brain Alignment 2026-05-19 cs.AI;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.20127 False False 2605.20454 Sparse Contextual Coupling Reshapes Diffusion Geometry in Multilayer Hypergraphs 2026-05-19 cs.SI;physics.soc-ph;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.20454 False False 2605.20496 Platonic Representations in the Human Brain: Unsupervised Recovery of Universal Geometry 2026-05-19 cs.CV;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.20496 False False 2605.20523 Machine-Learning-Enhanced Non-Invasive Testing for MASLD Fibrosis: Shallow-Deep Neural Networks Versus FIB-4, Tabular Foundation Models, and Large Language Models 2026-05-19 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.20523 False False 2605.20454 Sparse Contextual Coupling Reshapes Diffusion Geometry in Multilayer Hypergraphs 2026-05-19 cs.SI;physics.soc-ph;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.20454 False False 2605.20496 Platonic Representations in the Human Brain: Unsupervised Recovery of Universal Geometry 2026-05-19 cs.CV;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.20496 False False 2605.20523 Machine-Learning-Enhanced Non-Invasive Testing for MASLD Fibrosis: Shallow-Deep Neural Networks Versus FIB-4, Tabular Foundation Models, and Large Language Models 2026-05-19 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.20523 False False 2605.21522 Protein Thoughts: Interpretable Reasoning with Tree of Thoughts and Embedding-Space Flow Matching for Protein-Protein Interaction Discovery 2026-05-19 cs.AI;cs.CE;cs.LG;q-bio.QM;stat.ML q-bio.QM https://arxiv.org/abs/2605.21522 False False 2605.21522 Protein Thoughts: Interpretable Reasoning with Tree of Thoughts and Embedding-Space Flow Matching for Protein-Protein Interaction Discovery 2026-05-19 cs.AI;cs.CE;cs.LG;q-bio.QM;stat.ML q-bio.QM https://arxiv.org/abs/2605.21522 False False 2605.30372 Evolutionary Algorithm for Reservoir Learning and Yielding 2026-05-19 cs.AI;cs.LG;cs.NE;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.30372 False False 2605.30372 Evolutionary Algorithm for Reservoir Learning and Yielding 2026-05-19 cs.AI;cs.LG;cs.NE;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.30372 False False 2605.19579 TACK: A Statistical Evaluation of Degradation Activity on a Novel TArgeting Chimeras Knowledge Dataset 2026-05-19 q-bio.QM q-bio.QM https://arxiv.org/abs/2605.19579 False False 2605.17781 Universal interface fluctuations in absorbing-state phase transitions 2026-05-18 physics.CG;physics.stat-mech;q-bio.PE q-bio.PE https://arxiv.org/abs/2605.17781 False False 2605.17899 DCFold: Efficient Protein Structure Generation with Single Forward Pass 2026-05-18 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.17899 False False 2605.17975 M-SDT: A modelling framework for dengue transmission, forecasting, and intervention strategies in Ahmedabad Municipal Corporation 2026-05-18 q-bio.PE q-bio.PE https://arxiv.org/abs/2605.17975 False False 2605.18118 Functional Whole-Brain Models: A New Framework for Unifying Brain Structure and Cognitive Function 2026-05-18 q-bio.NC q-bio.NC https://arxiv.org/abs/2605.18118 False False 2605.18251 Subject-Specific Analysis of Self-Initiated Attention Shifts from EEG with Controlled Internal and External Attention Conditions 2026-05-18 cs.LG;eess.SP;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.18251 False False 2605.18552 Protein Fold Classification at Scale: Benchmarking and Pretraining 2026-05-18 cs.LG;q-bio.BM;q-bio.QM q-bio.BM https://arxiv.org/abs/2605.18552 False False 2605.18557 Self-supervised local learning rules learn the hidden hierarchical structure of high-dimensional data 2026-05-18 cs.LG;cs.NE;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.18557 False False 2605.18571 Incorporating vaccine effects into epidemiological models: common pitfalls and solutions 2026-05-18 q-bio.PE;q-bio.QM q-bio.PE https://arxiv.org/abs/2605.18571 False False 2605.18587 PACE: Geometry-Aware Bridge Transport for Single-Cell Trajectory Inference 2026-05-18 cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2605.18587 False False 2605.18588 OSSMM: An Open-Source Sleep Monitor and Modulator 2026-05-18 q-bio.QM;stat.ME q-bio.QM https://arxiv.org/abs/2605.18588 False False 2605.18685 Multi-objective Bayesian inference in an agent-based model of zebrafish patterns via topological data analysis 2026-05-18 q-bio.QM q-bio.QM https://arxiv.org/abs/2605.18685 False False 2605.18701 Learning Normal Representations for Blood Biomarkers 2026-05-18 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.18701 False False 2605.17781 Universal interface fluctuations in absorbing-state phase transitions 2026-05-18 physics.CG;physics.stat-mech;q-bio.PE q-bio.PE https://arxiv.org/abs/2605.17781 False False 2605.17899 DCFold: Efficient Protein Structure Generation with Single Forward Pass 2026-05-18 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.17899 False False 2605.17975 M-SDT: A modelling framework for dengue transmission, forecasting, and intervention strategies in Ahmedabad Municipal Corporation 2026-05-18 q-bio.PE q-bio.PE https://arxiv.org/abs/2605.17975 False False 2605.18118 Functional Whole-Brain Models: A New Framework for Unifying Brain Structure and Cognitive Function 2026-05-18 q-bio.NC q-bio.NC https://arxiv.org/abs/2605.18118 False False 2605.18251 Subject-Specific Analysis of Self-Initiated Attention Shifts from EEG with Controlled Internal and External Attention Conditions 2026-05-18 cs.LG;eess.SP;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.18251 False False 2605.18552 Protein Fold Classification at Scale: Benchmarking and Pretraining 2026-05-18 cs.LG;q-bio.BM;q-bio.QM q-bio.BM https://arxiv.org/abs/2605.18552 False False 2605.18557 Self-supervised local learning rules learn the hidden hierarchical structure of high-dimensional data 2026-05-18 cs.LG;cs.NE;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.18557 False False 2605.18571 Incorporating vaccine effects into epidemiological models: common pitfalls and solutions 2026-05-18 q-bio.PE;q-bio.QM q-bio.PE https://arxiv.org/abs/2605.18571 False False 2605.18587 PACE: Geometry-Aware Bridge Transport for Single-Cell Trajectory Inference 2026-05-18 cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2605.18587 False False 2605.18588 OSSMM: An Open-Source Sleep Monitor and Modulator 2026-05-18 q-bio.QM;stat.ME q-bio.QM https://arxiv.org/abs/2605.18588 False False 2605.18685 Multi-objective Bayesian inference in an agent-based model of zebrafish patterns via topological data analysis 2026-05-18 q-bio.QM q-bio.QM https://arxiv.org/abs/2605.18685 False False 2605.18701 Learning Normal Representations for Blood Biomarkers 2026-05-18 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.18701 False False 2605.18923 From Division to Decision: Leveraging Temporal Cell-Stage Segmentation for Embryo Transferability Prediction 2026-05-18 cs.CV;cs.LG;eess.IV;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.18923 False False 2605.19048 Conserved Kinematic Representations enable Zero-Shot Decoding in Handwriting BCIs 2026-05-18 q-bio.NC q-bio.NC https://arxiv.org/abs/2605.19048 False False 2605.19050 Generative Pseudo-Force Fields for Molecular Generation 2026-05-18 cs.LG;physics.chem-ph;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.19050 False False 2605.19070 Computational Auditory Periphery Models: the Return of the Rodent 2026-05-18 q-bio.NC q-bio.NC https://arxiv.org/abs/2605.19070 False False 2605.19071 Informational blueprints reveal condition-dependent gene regulatory architectures 2026-05-18 physics.stat-mech;q-bio.GN;q-bio.MN;q-bio.QM q-bio.GN https://arxiv.org/abs/2605.19071 False False 2605.19171 A putative model of the gut-muscle axis in aged livestock 2026-05-18 q-bio.TO q-bio.TO https://arxiv.org/abs/2605.19171 False False 2605.18616 Toward an Origin of Human Randomness: Interaction-Driven Enhancement in the Rock-Paper-Scissors Game 2026-05-18 cs.GT;physics.soc-ph;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.18616 False False 2605.18616 Toward an Origin of Human Randomness: Interaction-Driven Enhancement in the Rock-Paper-Scissors Game 2026-05-18 cs.GT;physics.soc-ph;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.18616 False False 2605.18923 From Division to Decision: Leveraging Temporal Cell-Stage Segmentation for Embryo Transferability Prediction 2026-05-18 cs.CV;cs.LG;eess.IV;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.18923 False False 2605.19048 Conserved Kinematic Representations enable Zero-Shot Decoding in Handwriting BCIs 2026-05-18 q-bio.NC q-bio.NC https://arxiv.org/abs/2605.19048 False False 2605.19050 Generative Pseudo-Force Fields for Molecular Generation 2026-05-18 cs.LG;physics.chem-ph;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.19050 False False 2605.19071 Informational blueprints reveal condition-dependent gene regulatory architectures 2026-05-18 physics.stat-mech;q-bio.GN;q-bio.MN;q-bio.QM q-bio.GN https://arxiv.org/abs/2605.19071 False False 2605.19171 A putative model of the gut-muscle axis in aged livestock 2026-05-18 q-bio.TO q-bio.TO https://arxiv.org/abs/2605.19171 False False 2605.19070 Computational Auditory Periphery Models: the Return of the Rodent 2026-05-18 q-bio.NC q-bio.NC https://arxiv.org/abs/2605.19070 False False 2605.19171 A putative model of the gut-muscle axis in aged livestock 2026-05-18 q-bio.TO q-bio.TO https://arxiv.org/abs/2605.19171 False False 2605.19070 Computational Auditory Periphery Models: the Return of the Rodent 2026-05-18 q-bio.NC q-bio.NC https://arxiv.org/abs/2605.19070 False False 2605.22853 Topological Signal Processing: An Application-Oriented Tutorial 2026-05-18 cs.LG;eess.SP;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.22853 False False 2605.22853 Topological Signal Processing: An Application-Oriented Tutorial 2026-05-18 cs.LG;eess.SP;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.22853 False False 2605.18587 PACE: Geometry-Aware Bridge Transport for Single-Cell Trajectory Inference 2026-05-18 cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2605.18587 False False 2605.18587 PACE: Geometry-Aware Bridge Transport for Single-Cell Trajectory Inference 2026-05-18 cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2605.18587 False False 2605.30368 Reinterpreting Safety Thresholds as Neuron Spiking Thresholds 2026-05-18 cs.AI;cs.NE;cs.RO;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.30368 False False 2605.30368 Reinterpreting Safety Thresholds as Neuron Spiking Thresholds 2026-05-18 cs.AI;cs.NE;cs.RO;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.30368 False False 2605.17208 Modeling tumor cell heterogeneity and plasticity in adaptive therapy 2026-05-17 q-bio.PE q-bio.PE https://arxiv.org/abs/2605.17208 False False 2605.17220 Skewed weak and Pareto-tailed strong interactions accompany community diversity and complexity 2026-05-17 physics.AO;physics.bio-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2605.17220 False False 2605.17313 Dose-limited interventions in an epidemiological model 2026-05-17 q-bio.PE q-bio.PE https://arxiv.org/abs/2605.17313 False False 2605.17399 Von Economo neurons enable reliable social skill acquisition in recurrent spiking neural networks: a computational account with clinical predictions 2026-05-17 cs.NE;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.17399 False False 2605.17559 Controlling False Discovery in Arbitrarily Structured Hypothesis Spaces via Reproducing Kernels 2026-05-17 cs.AI;q-bio.QM;stat.ME;stat.ML q-bio.QM https://arxiv.org/abs/2605.17559 False False 2605.17208 Modeling tumor cell heterogeneity and plasticity in adaptive therapy 2026-05-17 q-bio.PE q-bio.PE https://arxiv.org/abs/2605.17208 False False 2605.17220 Skewed weak and Pareto-tailed strong interactions accompany community diversity and complexity 2026-05-17 physics.AO;physics.bio-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2605.17220 False False 2605.17313 Dose-limited interventions in an epidemiological model 2026-05-17 q-bio.PE q-bio.PE https://arxiv.org/abs/2605.17313 False False 2605.17399 Von Economo neurons enable reliable social skill acquisition in recurrent spiking neural networks: a computational account with clinical predictions 2026-05-17 cs.NE;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.17399 False False 2605.17559 Controlling False Discovery in Arbitrarily Structured Hypothesis Spaces via Reproducing Kernels 2026-05-17 cs.AI;q-bio.QM;stat.ME;stat.ML q-bio.QM https://arxiv.org/abs/2605.17559 False False 2605.16724 Discovering interpretable low-dimensional dynamics using maximum entropy 2026-05-16 q-bio.QM q-bio.QM https://arxiv.org/abs/2605.16724 False False 2605.16739 EmoMind: Decoding Affective Captions from Human Brain fMRI 2026-05-16 cs.AI;cs.CL;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.16739 False False 2605.16753 Viability Space Decomposition: A geometric partition of survival outcomes in single- and multi-agent systems 2026-05-16 math.DS;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.16753 False False 2605.16761 A Mathematical Characterization of Neural Activation Induced by Temporal Interference Stimulation 2026-05-16 math.DS;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.16761 False False 2605.16781 Control Laws in Aging and Longevity 2026-05-16 q-bio.MN;q-bio.PE q-bio.MN https://arxiv.org/abs/2605.16781 False False 2605.16860 PhysioSeq2Seq: A Hybrid Physiological Digital Twin and Sequence-to-Sequence LSTM for Long-Horizon Glucose Forecasting in Type 1 Diabetes 2026-05-16 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.16860 False False 2605.16938 Effort as Ceiling, Not Dial: Reasoning Budget Does Not Modulate Cognitive Cost Alignment Between Humans and Large Reasoning Models 2026-05-16 cs.AI;cs.CL;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.16938 False False 2605.17129 Within-host immunology to age-of-infection epidemiology via a virtual cohort 2026-05-16 q-bio.PE;q-bio.QM q-bio.PE https://arxiv.org/abs/2605.17129 False False 2605.17186 Solving linear-rate ODE hierarchies (like master equations) using closures and operator splitting 2026-05-16 cs.NA;math.DS;math.NA;math.PR;q-bio.QM;stat.CO q-bio.QM https://arxiv.org/abs/2605.17186 False False 2605.17198 MIRAGE: Robust multi-modal architectures translate fMRI-to-image models from vision to mental imagery 2026-05-16 cs.CV;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.17198 False False 2605.17199 Geometric Phase Transition Enables Extreme Hippocampal Memory Capacity 2026-05-16 physics.bio-ph;physics.dis-nn;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.17199 False False 2605.16724 Discovering interpretable low-dimensional dynamics using maximum entropy 2026-05-16 q-bio.QM q-bio.QM https://arxiv.org/abs/2605.16724 False False 2605.16739 EmoMind: Decoding Affective Captions from Human Brain fMRI 2026-05-16 cs.AI;cs.CL;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.16739 False False 2605.16753 Viability Space Decomposition: A geometric partition of survival outcomes in single- and multi-agent systems 2026-05-16 math.DS;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.16753 False False 2605.16761 A Mathematical Characterization of Neural Activation Induced by Temporal Interference Stimulation 2026-05-16 math.DS;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.16761 False False 2605.16781 Control Laws in Aging and Longevity 2026-05-16 q-bio.MN;q-bio.PE q-bio.MN https://arxiv.org/abs/2605.16781 False False 2605.16860 PhysioSeq2Seq: A Hybrid Physiological Digital Twin and Sequence-to-Sequence LSTM for Long-Horizon Glucose Forecasting in Type 1 Diabetes 2026-05-16 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.16860 False False 2605.16938 Effort as Ceiling, Not Dial: Reasoning Budget Does Not Modulate Cognitive Cost Alignment Between Humans and Large Reasoning Models 2026-05-16 cs.AI;cs.CL;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.16938 False False 2605.17129 Within-host immunology to age-of-infection epidemiology via a virtual cohort 2026-05-16 q-bio.PE;q-bio.QM q-bio.PE https://arxiv.org/abs/2605.17129 False False 2605.17186 Solving linear-rate ODE hierarchies (like master equations) using closures and operator splitting 2026-05-16 cs.NA;math.DS;math.NA;math.PR;q-bio.QM;stat.CO q-bio.QM https://arxiv.org/abs/2605.17186 False False 2605.17198 MIRAGE: Robust multi-modal architectures translate fMRI-to-image models from vision to mental imagery 2026-05-16 cs.CV;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.17198 False False 2605.17199 Geometric Phase Transition Enables Extreme Hippocampal Memory Capacity 2026-05-16 physics.bio-ph;physics.dis-nn;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.17199 False False 2605.18880 A Multi-Dimensional Clustering Approach for Identifying Inborn Errors of Immunity 2026-05-16 cs.CV;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.18880 False False 2605.18880 A Multi-Dimensional Clustering Approach for Identifying Inborn Errors of Immunity 2026-05-16 cs.CV;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.18880 False False 2605.28854 Large language models reorganize representational geometry during in-context learning 2026-05-16 cs.CL;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.28854 False False 2605.28854 Large language models reorganize representational geometry during in-context learning 2026-05-16 cs.CL;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.28854 False False 2605.16781 Control Laws in Aging and Longevity 2026-05-16 q-bio.MN;q-bio.PE q-bio.MN https://arxiv.org/abs/2605.16781 False False 2605.16781 Control Laws in Aging and Longevity 2026-05-16 q-bio.MN;q-bio.PE q-bio.MN https://arxiv.org/abs/2605.16781 False False 2605.16739 EmoMind: Decoding Affective Captions from Human Brain fMRI 2026-05-16 cs.AI;cs.CL;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.16739 False False 2605.16739 EmoMind: Decoding Affective Captions from Human Brain fMRI 2026-05-16 cs.AI;cs.CL;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.16739 False False 2605.16781 Control Laws in Aging and Longevity: A Control Theory of Aging for Gerotherapeutic Drug Discovery 2026-05-16 q-bio.MN;q-bio.PE q-bio.MN https://arxiv.org/abs/2605.16781 False False 2605.16781 Control Laws in Aging and Longevity: A Control Theory of Aging for Gerotherapeutic Drug Discovery 2026-05-16 q-bio.MN;q-bio.PE q-bio.MN https://arxiv.org/abs/2605.16781 False False 2605.17186 Operator splitting for exploiting linear-rate closure in solving infinite ODE hierarchies 2026-05-16 cs.NA;math.DS;math.NA;math.PR;q-bio.QM;stat.CO q-bio.QM https://arxiv.org/abs/2605.17186 False False 2605.17186 Operator splitting for exploiting linear-rate closure in solving infinite ODE hierarchies 2026-05-16 cs.NA;math.DS;math.NA;math.PR;q-bio.QM;stat.CO q-bio.QM https://arxiv.org/abs/2605.17186 False False 2605.17129 Within-host immunology to age-of-infection epidemiology via a virtual cohort 2026-05-16 q-bio.PE;q-bio.QM q-bio.PE https://arxiv.org/abs/2605.17129 False False 2605.17129 Within-host immunology to age-of-infection epidemiology via a virtual cohort 2026-05-16 q-bio.PE;q-bio.QM q-bio.PE https://arxiv.org/abs/2605.17129 False False 2605.28854 Large language models reorganize representational geometry during in-context learning 2026-05-16 cs.CL;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.28854 False False 2605.15680 Few-Shot Large Language Models for Actionable Triage Categorization of Online Patient Inquiries 2026-05-15 cs.CL;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.15680 False False 2605.15801 Beyond Flickering: Introducing Code-Modulated Motion Visual Evoked Potentials for Brain-Computer Interfacing 2026-05-15 q-bio.NC q-bio.NC https://arxiv.org/abs/2605.15801 False False 2605.15839 How nature discovers rare Turing islands: exploration by common limit cycles 2026-05-15 math.DS;physics.bio-ph;q-bio.CB;q-bio.PE;q-bio.QM q-bio.CB https://arxiv.org/abs/2605.15839 False False 2605.15862 From Observed Viability to Internal Predictive Approximation: A Single-Subject Latent-Space Analysis of Gait Dynamics Under Occlusal Constraint 2026-05-15 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.15862 False False 2605.15912 Actin cross-linking organizes basal body patterning through anomalous diffusion transitions 2026-05-15 physics.bio-ph;physics.soft;q-bio.SC q-bio.SC https://arxiv.org/abs/2605.15912 False False 2605.15918 The Impact of Heatwaves on Population Health: A Large Language Model-Enhanced Agent-Based Simulation 2026-05-15 q-bio.QM q-bio.QM https://arxiv.org/abs/2605.15918 False False 2605.16049 Conditions for spatial instabilities and pattern formation from monomial steady state parameterizations 2026-05-15 math.AP;math.DS;q-bio.MN q-bio.MN https://arxiv.org/abs/2605.16049 False False 2605.16104 StateXDiff: Cell State-Contextualized Multimodal Diffusion for Single-Cell Perturbation Prediction 2026-05-15 q-bio.GN;q-bio.QM q-bio.GN https://arxiv.org/abs/2605.16104 False False 2605.16108 Estimating Association Between Paired Outcomes in Clustered Data with Informative Subgroup Size 2026-05-15 q-bio.QM;stat.AP;stat.ME q-bio.QM https://arxiv.org/abs/2605.16108 False False 2605.16146 The Complex Brain Hypothesis: Resolving the Entropy-Content Conundrum in Minimal Phenomenal Experience 2026-05-15 q-bio.NC q-bio.NC https://arxiv.org/abs/2605.16146 False False 2605.15680 Few-Shot Large Language Models for Actionable Triage Categorization of Online Patient Inquiries 2026-05-15 cs.CL;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.15680 False False 2605.15801 Beyond Flickering: Introducing Code-Modulated Motion Visual Evoked Potentials for Brain-Computer Interfacing 2026-05-15 q-bio.NC q-bio.NC https://arxiv.org/abs/2605.15801 False False 2605.15839 How nature discovers rare Turing islands: exploration by common limit cycles 2026-05-15 math.DS;physics.bio-ph;q-bio.CB;q-bio.PE;q-bio.QM q-bio.CB https://arxiv.org/abs/2605.15839 False False 2605.15862 From Observed Viability to Internal Predictive Approximation: A Single-Subject Latent-Space Analysis of Gait Dynamics Under Occlusal Constraint 2026-05-15 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.15862 False False 2605.15912 Actin cross-linking organizes basal body patterning through anomalous diffusion transitions 2026-05-15 physics.bio-ph;physics.soft;q-bio.SC q-bio.SC https://arxiv.org/abs/2605.15912 False False 2605.15918 The Impact of Heatwaves on Population Health: A Large Language Model-Enhanced Agent-Based Simulation 2026-05-15 q-bio.QM q-bio.QM https://arxiv.org/abs/2605.15918 False False 2605.16049 Conditions for spatial instabilities and pattern formation from monomial steady state parameterizations 2026-05-15 math.AP;math.DS;q-bio.MN q-bio.MN https://arxiv.org/abs/2605.16049 False False 2605.16104 StateXDiff: Cell State-Contextualized Multimodal Diffusion for Single-Cell Perturbation Prediction 2026-05-15 q-bio.GN;q-bio.QM q-bio.GN https://arxiv.org/abs/2605.16104 False False 2605.16108 Estimating Association Between Paired Outcomes in Clustered Data with Informative Subgroup Size 2026-05-15 q-bio.QM;stat.AP;stat.ME q-bio.QM https://arxiv.org/abs/2605.16108 False False 2605.16146 The Complex Brain Hypothesis: Resolving the Entropy-Content Conundrum in Minimal Phenomenal Experience 2026-05-15 q-bio.NC q-bio.NC https://arxiv.org/abs/2605.16146 False False 2605.16468 Mechanistically Interpretable Neural Encoding Reveals Fine-Grained Functional Selectivity in Human Visual Cortex 2026-05-15 cs.AI;cs.CL;cs.CV;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.16468 False False 2605.16480 MoleCode unlocks structural intelligence in large language models 2026-05-15 cs.AI;q-bio.BM q-bio.BM https://arxiv.org/abs/2605.16480 False False 2605.16693 Branching under First-Passage Resetting 2026-05-15 math.PR;physics.bio-ph;physics.stat-mech;q-bio.PE q-bio.PE https://arxiv.org/abs/2605.16693 False False 2605.16468 Mechanistically Interpretable Neural Encoding Reveals Fine-Grained Functional Selectivity in Human Visual Cortex 2026-05-15 cs.AI;cs.CL;cs.CV;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.16468 False False 2605.16480 MoleCode unlocks structural intelligence in large language models 2026-05-15 cs.AI;q-bio.BM q-bio.BM https://arxiv.org/abs/2605.16480 False False 2605.16693 Branching under First-Passage Resetting 2026-05-15 math.PR;physics.bio-ph;physics.stat-mech;q-bio.PE q-bio.PE https://arxiv.org/abs/2605.16693 False False 2605.16108 Estimating Association Between Paired Outcomes in Clustered Data with Informative Subgroup Size 2026-05-15 q-bio.QM;stat.AP;stat.ME q-bio.QM https://arxiv.org/abs/2605.16108 False False 2605.16108 Estimating Association Between Paired Outcomes in Clustered Data with Informative Subgroup Size 2026-05-15 q-bio.QM;stat.AP;stat.ME q-bio.QM https://arxiv.org/abs/2605.16108 False False 2605.27413 Ligand-Conditioned Discrete Diffusion for Protein Sequence-Structure Co-Design 2026-05-15 cs.AI;q-bio.BM q-bio.BM https://arxiv.org/abs/2605.27413 False False 2605.27413 Ligand-Conditioned Discrete Diffusion for Protein Sequence-Structure Co-Design 2026-05-15 cs.AI;q-bio.BM q-bio.BM https://arxiv.org/abs/2605.27413 False False 2605.15862 From Observed Viability to Internal Predictive Approximation: A Single-Subject Latent-Space Analysis of Gait Dynamics Under Occlusal Constraint 2026-05-15 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.15862 False False 2605.15862 From Observed Viability to Internal Predictive Approximation: A Single-Subject Latent-Space Analysis of Gait Dynamics Under Occlusal Constraint 2026-05-15 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.15862 False False 2605.14215 GenCircuit-RL: Reinforcement Learning from Hierarchical Verification for Genetic Circuit Design 2026-05-14 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.14215 False False 2605.14319 Approximate Macroscopic Dynamics of Spiking Neural Networks Based on Solutions to the Transport Equation 2026-05-14 math.DS;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.14319 False False 2605.14388 Multiple mechanisms of rhythm switching in recurrent neural networks with adaptive time constants 2026-05-14 q-bio.NC q-bio.NC https://arxiv.org/abs/2605.14388 False False 2605.14496 Detection of residual native state entropy changes upon mutation in Fyn SH3 2026-05-14 q-bio.BM q-bio.BM https://arxiv.org/abs/2605.14496 False False 2605.14562 Autonomous Reshaping of Expression Landscapes by DNA Methylation 2026-05-14 physics.soft;q-bio.MN q-bio.MN https://arxiv.org/abs/2605.14562 False False 2605.14680 Are cortical microcircuits optimized for information flux? -- A simulation-based reverse engineering study 2026-05-14 q-bio.NC q-bio.NC https://arxiv.org/abs/2605.14680 False False 2605.14812 MetaGEM: Bottom-Up Reconstruction of Genome-Scale Metabolic Networks via Deep Enzyme-Metabolite Anchoring 2026-05-14 q-bio.QM q-bio.QM https://arxiv.org/abs/2605.14812 False False 2605.14867 REALM: Retrospective Encoder Alignment for LFP Modeling 2026-05-14 cs.AI;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.14867 False False 2605.14998 Learning Developmental Scaffoldings to Guide Self-Organisation 2026-05-14 cs.AI;cs.SY;eess.SY;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.14998 False False 2605.14215 GenCircuit-RL: Reinforcement Learning from Hierarchical Verification for Genetic Circuit Design 2026-05-14 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.14215 False False 2605.14319 Approximate Macroscopic Dynamics of Spiking Neural Networks Based on Solutions to the Transport Equation 2026-05-14 math.DS;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.14319 False False 2605.14388 Multiple mechanisms of rhythm switching in recurrent neural networks with adaptive time constants 2026-05-14 q-bio.NC q-bio.NC https://arxiv.org/abs/2605.14388 False False 2605.14496 Detection of residual native state entropy changes upon mutation in Fyn SH3 2026-05-14 q-bio.BM q-bio.BM https://arxiv.org/abs/2605.14496 False False 2605.14562 Autonomous Reshaping of Expression Landscapes by DNA Methylation 2026-05-14 physics.soft;q-bio.MN q-bio.MN https://arxiv.org/abs/2605.14562 False False 2605.14680 Are cortical microcircuits optimized for information flux? -- A simulation-based reverse engineering study 2026-05-14 q-bio.NC q-bio.NC https://arxiv.org/abs/2605.14680 False False 2605.14812 MetaGEM: Bottom-Up Reconstruction of Genome-Scale Metabolic Networks via Deep Enzyme-Metabolite Anchoring 2026-05-14 q-bio.QM q-bio.QM https://arxiv.org/abs/2605.14812 False False 2605.14867 REALM: Retrospective Encoder Alignment for LFP Modeling 2026-05-14 cs.AI;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.14867 False False 2605.14998 Learning Developmental Scaffoldings to Guide Self-Organisation 2026-05-14 cs.AI;cs.SY;eess.SY;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.14998 False False 2605.14496 Detection of residual native state entropy changes upon mutation in Fyn SH3 2026-05-14 q-bio.BM q-bio.BM https://arxiv.org/abs/2605.14496 False False 2605.14998 Learning Developmental Scaffoldings to Guide Self-Organisation 2026-05-14 cs.AI;cs.SY;eess.SY;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.14998 False False 2605.15243 Reading the Cell, Designing the Cure: Perturbation-Conditioned Molecular Diffusion for Function-Oriented Drug Design 2026-05-14 cs.AI;cs.LG;q-bio.BM;q-bio.MN;q-bio.QM q-bio.BM https://arxiv.org/abs/2605.15243 False False 2605.15353 PACER: Acyclic Causal Discovery from Large-Scale Interventional Data 2026-05-14 cs.AI;cs.LG;q-bio.MN;q-bio.QM q-bio.MN https://arxiv.org/abs/2605.15353 False False 2605.15364 A geometry-dependent, force balance-driven model of Staphylococcus epidermidis biofilm cell cluster detachment 2026-05-14 math.GM;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.15364 False False 2605.14496 Detection of residual native state entropy changes upon mutation in Fyn SH3 2026-05-14 q-bio.BM q-bio.BM https://arxiv.org/abs/2605.14496 False False 2605.14998 Learning Developmental Scaffoldings to Guide Self-Organisation 2026-05-14 cs.AI;cs.SY;eess.SY;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.14998 False False 2605.15243 Reading the Cell, Designing the Cure: Perturbation-Conditioned Molecular Diffusion for Function-Oriented Drug Design 2026-05-14 cs.AI;cs.LG;q-bio.BM;q-bio.MN;q-bio.QM q-bio.BM https://arxiv.org/abs/2605.15243 False False 2605.15353 PACER: Acyclic Causal Discovery from Large-Scale Interventional Data 2026-05-14 cs.AI;cs.LG;q-bio.MN;q-bio.QM q-bio.MN https://arxiv.org/abs/2605.15353 False False 2605.15364 A geometry-dependent, force balance-driven model of Staphylococcus epidermidis biofilm cell cluster detachment 2026-05-14 math.GM;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.15364 False False 2605.15401 Noise Tradeoffs, Stationary Information Flow, and Structural Balance in Unit-Birth Networks 2026-05-14 math.PR;q-bio.MN;q-bio.PE q-bio.MN https://arxiv.org/abs/2605.15401 False False 2605.15401 Noise Tradeoffs, Stationary Information Flow, and Structural Balance in Unit-Birth Networks 2026-05-14 math.PR;q-bio.MN;q-bio.PE q-bio.MN https://arxiv.org/abs/2605.15401 False False 2605.14998 Learning Developmental Scaffoldings to Guide Self-Organisation 2026-05-14 cs.AI;cs.SY;eess.SY;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.14998 False False 2605.14998 Learning Developmental Scaffoldings to Guide Self-Organisation 2026-05-14 cs.AI;cs.SY;eess.SY;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.14998 False False 2605.14998 Learning Developmental Scaffoldings to Guide Self-Organisation 2026-05-14 cs.AI;cs.SY;eess.SY;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.14998 False False 2605.14998 Learning Developmental Scaffoldings to Guide Self-Organisation 2026-05-14 cs.AI;cs.SY;eess.SY;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.14998 False False 2605.12852 Multitask Multimodal Fusion with Tabular Foundation Models for Peak and Durability Prediction of Pertussis Booster Response 2026-05-13 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.12852 False False 2605.12992 SpikeProphecy: A Large-Scale Benchmark for Autoregressive Neural Population Forecasting 2026-05-13 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.12992 False False 2605.12999 Implicit Behavioral Decoding from Next-Step Spike Forecasts at Population Scale 2026-05-13 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.12999 False False 2605.13009 Conditioning as a route to stereotyped behavior in growing populations 2026-05-13 physics.bio-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2605.13009 False False 2605.13070 3D mechano-geometric multicellular model of apical stem cell-driven plant morphogenesis 2026-05-13 physics.bio-ph;q-bio.CB;q-bio.TO q-bio.CB https://arxiv.org/abs/2605.13070 False False 2605.13234 A hyperbolic cell cycle law for early embryonic developmental timing 2026-05-13 physics.bio-ph;physics.stat-mech;q-bio.TO q-bio.TO https://arxiv.org/abs/2605.13234 False False 2605.13262 Chem-GMNet: A Sphere-Native Geometric Transformer for Molecular Property Prediction 2026-05-13 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.13262 False False 2605.13315 Embodied Neurocomputation: A Framework for Interfacing Biological Neural Cultures with Scaled Task-Driven Validation 2026-05-13 cs.ET;cs.LG;cs.NE;cs.SY;eess.SY;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.13315 False False 2605.13364 Predicting Endocrine Disruptors: A Deep Learning QSAR Model for Estrogen Receptor Activity 2026-05-13 q-bio.BM q-bio.BM https://arxiv.org/abs/2605.13364 False False 2605.13504 Structural identifiability of partially-observed stochastic processes: from single-particle trajectories to total particle density data 2026-05-13 math.AP;math.DS;math.PR;q-bio.QM;stat.ME q-bio.QM https://arxiv.org/abs/2605.13504 0.7559 0.8126 True False 2605.13535 Shared quasispecies architecture in experimental and natural RNA virus populations 2026-05-13 q-bio.PE q-bio.PE https://arxiv.org/abs/2605.13535 False False 2605.13675 Characterizing Universal Object Representations Across Vision Models 2026-05-13 cs.CV;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.13675 False False 2605.13750 The Co-evolution of Costly Signaling and Cooperation in Social Dilemmas 2026-05-13 cs.GT;physics.soc-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2605.13750 False False 2605.13789 ENSEMBITS: an alphabet of protein conformational ensembles 2026-05-13 cs.AI;cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2605.13789 False False 2605.12852 Multitask Multimodal Fusion with Tabular Foundation Models for Peak and Durability Prediction of Pertussis Booster Response 2026-05-13 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.12852 False False 2605.12992 SpikeProphecy: A Large-Scale Benchmark for Autoregressive Neural Population Forecasting 2026-05-13 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.12992 False False 2605.12999 Implicit Behavioral Decoding from Next-Step Spike Forecasts at Population Scale 2026-05-13 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.12999 False False 2605.13009 Conditioning as a route to stereotyped behavior in growing populations 2026-05-13 physics.bio-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2605.13009 False False 2605.13070 3D mechano-geometric multicellular model of apical stem cell-driven plant morphogenesis 2026-05-13 physics.bio-ph;q-bio.CB;q-bio.TO q-bio.CB https://arxiv.org/abs/2605.13070 False False 2605.13234 A hyperbolic cell cycle law for early embryonic developmental timing 2026-05-13 physics.bio-ph;physics.stat-mech;q-bio.TO q-bio.TO https://arxiv.org/abs/2605.13234 False False 2605.13262 Chem-GMNet: A Sphere-Native Geometric Transformer for Molecular Property Prediction 2026-05-13 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.13262 False False 2605.13315 Embodied Neurocomputation: A Framework for Interfacing Biological Neural Cultures with Scaled Task-Driven Validation 2026-05-13 cs.ET;cs.LG;cs.NE;cs.SY;eess.SY;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.13315 False False 2605.13364 Predicting Endocrine Disruptors: A Deep Learning QSAR Model for Estrogen Receptor Activity 2026-05-13 q-bio.BM q-bio.BM https://arxiv.org/abs/2605.13364 False False 2605.13504 Structural identifiability of partially-observed stochastic processes: from single-particle trajectories to total particle density data 2026-05-13 math.AP;math.DS;math.PR;q-bio.QM;stat.ME q-bio.QM https://arxiv.org/abs/2605.13504 0.7559 0.8126 True False 2605.13535 Shared quasispecies architecture in experimental and natural RNA virus populations 2026-05-13 q-bio.PE q-bio.PE https://arxiv.org/abs/2605.13535 False False 2605.13675 Characterizing Universal Object Representations Across Vision Models 2026-05-13 cs.CV;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.13675 False False 2605.13750 The Co-evolution of Costly Signaling and Cooperation in Social Dilemmas 2026-05-13 cs.GT;physics.soc-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2605.13750 False False 2605.13904 Feature Visualization Recovers Known Cortical Selectivity from TRIBE v2 2026-05-13 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.13904 False False 2605.13927 Kin-ematic Exclusion in Active Matter: Modelling Mutual Inhibition in \textit{Pseudomonas aeruginosa} Sibling Colonies 2026-05-13 physics.bio-ph;q-bio.CB q-bio.CB https://arxiv.org/abs/2605.13927 False False 2605.14025 Do Language Models Align with Brains? Prediction Scores Are Not Enough 2026-05-13 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.14025 False False 2605.13789 ENSEMBITS: an alphabet of protein conformational ensembles 2026-05-13 cs.AI;cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2605.13789 False False 2605.13789 ENSEMBITS: an alphabet of protein conformational ensembles 2026-05-13 cs.AI;cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2605.13789 False False 2605.13904 Feature Visualization Recovers Known Cortical Selectivity from TRIBE v2 2026-05-13 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.13904 False False 2605.13927 Kin-ematic Exclusion in Active Matter: Modelling Mutual Inhibition in \textit{Pseudomonas aeruginosa} Sibling Colonies 2026-05-13 physics.bio-ph;q-bio.CB q-bio.CB https://arxiv.org/abs/2605.13927 False False 2605.14025 Do Language Models Align with Brains? Prediction Scores Are Not Enough 2026-05-13 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.14025 False False 2605.15225 Do Biological Structural Guarantees Earn Their Complexity? 2026-05-13 cs.AI;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.15225 False False 2605.15225 Do Biological Structural Guarantees Earn Their Complexity? 2026-05-13 cs.AI;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.15225 False False 2605.18834 The fitness landscape of social norms in social dilemmas 2026-05-13 cs.GT;cs.MA;cs.SI;q-bio.PE q-bio.PE https://arxiv.org/abs/2605.18834 False False 2605.18834 The fitness landscape of social norms in social dilemmas 2026-05-13 cs.GT;cs.MA;cs.SI;q-bio.PE q-bio.PE https://arxiv.org/abs/2605.18834 False False 2605.23967 Sensing Intelligence as a Trainable Metamaterial Property 2026-05-13 cs.AI;physics.app-ph;physics.mtrl-sci;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.23967 False False 2605.23981 Metacognition Should Be the Scientific Framework for Bounded and Effective Self-Governance in Generative AI 2026-05-13 cs.AI;cs.CY;cs.HC;cs.SY;eess.SY;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.23981 False False 2605.23967 Sensing Intelligence as a Trainable Metamaterial Property 2026-05-13 cs.AI;physics.app-ph;physics.mtrl-sci;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.23967 False False 2605.23981 Metacognition Should Be the Scientific Framework for Bounded and Effective Self-Governance in Generative AI 2026-05-13 cs.AI;cs.CY;cs.HC;cs.SY;eess.SY;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.23981 False False 2605.23967 Sensing Intelligence as a Trainable Metamaterial Property 2026-05-13 cs.AI;physics.app-ph;physics.mtrl-sci;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.23967 False False 2605.23967 Sensing Intelligence as a Trainable Metamaterial Property 2026-05-13 cs.AI;physics.app-ph;physics.mtrl-sci;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.23967 False False 2605.13504 Structural identifiability of partially-observed stochastic processes: from single-particle trajectories to total particle density data 2026-05-13 math.AP;math.DS;math.PR;q-bio.QM;stat.ME q-bio.QM https://arxiv.org/abs/2605.13504 0.7559 0.8126 True False 2605.13504 Structural identifiability of partially-observed stochastic processes: from single-particle trajectories to total particle density data 2026-05-13 math.AP;math.DS;math.PR;q-bio.QM;stat.ME q-bio.QM https://arxiv.org/abs/2605.13504 0.7559 0.8126 True False 2605.11368 LPDP: Inference-Time Reward Control for Variable-Length DNA Generation with Edit Flows 2026-05-12 cs.AI;cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2605.11368 False False 2605.11389 Bistability, Absolute Concentration Robustness, and Hysteresis in Dual-Site Futile Cycles with Bifunctional Enzymes 2026-05-12 math.DS;q-bio.MN q-bio.MN https://arxiv.org/abs/2605.11389 False False 2605.11450 Scalable vertex guided filtrations identify structurally relevant genes in cancer networks 2026-05-12 q-bio.MN q-bio.MN https://arxiv.org/abs/2605.11450 False False 2605.11598 EpiCastBench: Datasets and Benchmarks for Multivariate Epidemic Forecasting 2026-05-12 cs.AI;cs.DB;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.11598 False False 2605.11648 NORI: Fast probabilistic inference for ambiguous observation-entity mappings 2026-05-12 q-bio.QM q-bio.QM https://arxiv.org/abs/2605.11648 False False 2605.11675 Accounting for Missed Events in the Bayesian Modeling of IP3R Multimodal Gating 2026-05-12 q-bio.NC;q-bio.QM q-bio.NC https://arxiv.org/abs/2605.11675 False False 2605.11718 Self-organized MT Direction Maps Emerge from Spatiotemporal Contrastive Optimization 2026-05-12 cs.AI;cs.NE;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.11718 False False 2605.11764 Decomposing the Generalization Gap in PROTAC Activity Prediction: Variance Attribution and the Inter-Laboratory Ceiling 2026-05-12 cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2605.11764 False False 2605.12286 Set-Aggregated Genome Embeddings for Microbiome Abundance Prediction 2026-05-12 cs.AI;q-bio.GN q-bio.GN https://arxiv.org/abs/2605.12286 False False 2605.12404 Empirical scaling laws in balanced networks with conductance-based synapses 2026-05-12 q-bio.NC q-bio.NC https://arxiv.org/abs/2605.12404 False False 2605.12485 Letting the neural code speak: Automated characterization of monkey visual neurons through human language 2026-05-12 q-bio.NC;q-bio.QM q-bio.NC https://arxiv.org/abs/2605.12485 False False 2605.11368 LPDP: Inference-Time Reward Control for Variable-Length DNA Generation with Edit Flows 2026-05-12 cs.AI;cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2605.11368 False False 2605.11389 Bistability, Absolute Concentration Robustness, and Hysteresis in Dual-Site Futile Cycles with Bifunctional Enzymes 2026-05-12 math.DS;q-bio.MN q-bio.MN https://arxiv.org/abs/2605.11389 False False 2605.11450 Scalable vertex guided filtrations identify structurally relevant genes in cancer networks 2026-05-12 q-bio.MN q-bio.MN https://arxiv.org/abs/2605.11450 False False 2605.11598 EpiCastBench: Datasets and Benchmarks for Multivariate Epidemic Forecasting 2026-05-12 cs.AI;cs.DB;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.11598 False False 2605.11648 NORI: Fast probabilistic inference for ambiguous observation-entity mappings 2026-05-12 q-bio.QM q-bio.QM https://arxiv.org/abs/2605.11648 False False 2605.11675 Accounting for Missed Events in the Bayesian Modeling of IP3R Multimodal Gating 2026-05-12 q-bio.NC;q-bio.QM q-bio.NC https://arxiv.org/abs/2605.11675 False False 2605.11718 Self-organized MT Direction Maps Emerge from Spatiotemporal Contrastive Optimization 2026-05-12 cs.AI;cs.NE;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.11718 False False 2605.11764 Decomposing the Generalization Gap in PROTAC Activity Prediction: Variance Attribution and the Inter-Laboratory Ceiling 2026-05-12 cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2605.11764 False False 2605.12286 Set-Aggregated Genome Embeddings for Microbiome Abundance Prediction 2026-05-12 cs.AI;q-bio.GN q-bio.GN https://arxiv.org/abs/2605.12286 False False 2605.12404 Empirical scaling laws in balanced networks with conductance-based synapses 2026-05-12 q-bio.NC q-bio.NC https://arxiv.org/abs/2605.12404 False False 2605.12485 Letting the neural code speak: Automated characterization of monkey visual neurons through human language 2026-05-12 q-bio.NC;q-bio.QM q-bio.NC https://arxiv.org/abs/2605.12485 False False 2605.12619 Human face perception reflects inverse-generative and naturalistic discriminative objectives 2026-05-12 cs.CV;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.12619 False False 2605.12662 scShapeBench: Discovering geometry from high dimensional scRNAseq data 2026-05-12 cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2605.12662 False False 2605.12706 A Resampling-Based Framework for Network Structure Learning in High-Dimensional Data 2026-05-12 cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2605.12706 False False 2605.12732 Predictive Coding Light+: learning to predict visual sequences with spike timing-dependent plasticity and synaptic delays 2026-05-12 q-bio.NC q-bio.NC https://arxiv.org/abs/2605.12732 False False 2605.12763 State-Space NTK Collapse Near Bifurcations 2026-05-12 cs.LG;math.DS;math.OC;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.12763 False False 2605.12773 The interplay of network structure and correlated infectious traits in epidemic models 2026-05-12 physics.soc-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2605.12773 False False 2605.12784 ToolMol: Evolutionary Agentic Framework for Multi-objective Drug Discovery 2026-05-12 cs.LG;cs.NE;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.12784 False False 2605.12823 Hessian Matching for Machine-Learned Coarse-Grained Molecular Dynamics 2026-05-12 cs.LG;physics.chem-ph;physics.comp-ph;q-bio.BM q-bio.BM https://arxiv.org/abs/2605.12823 False False 2605.12619 Human face perception reflects inverse-generative and naturalistic discriminative objectives 2026-05-12 cs.CV;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.12619 False False 2605.12662 scShapeBench: Discovering geometry from high dimensional scRNAseq data 2026-05-12 cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2605.12662 False False 2605.12706 A Resampling-Based Framework for Network Structure Learning in High-Dimensional Data 2026-05-12 cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2605.12706 False False 2605.12732 Predictive Coding Light+: learning to predict visual sequences with spike timing-dependent plasticity and synaptic delays 2026-05-12 q-bio.NC q-bio.NC https://arxiv.org/abs/2605.12732 False False 2605.12763 State-Space NTK Collapse Near Bifurcations 2026-05-12 cs.LG;math.DS;math.OC;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.12763 False False 2605.12773 The interplay of network structure and correlated infectious traits in epidemic models 2026-05-12 physics.soc-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2605.12773 False False 2605.12823 Hessian Matching for Machine-Learned Coarse-Grained Molecular Dynamics 2026-05-12 cs.LG;physics.chem-ph;physics.comp-ph;q-bio.BM q-bio.BM https://arxiv.org/abs/2605.12823 False False 2605.13893 From Organization to Viability: A Multi-Level Analysis of Gait Dynamics Under Occlusal Constraint 2026-05-12 q-bio.NC;q-bio.OT q-bio.NC https://arxiv.org/abs/2605.13893 False False 2605.13894 Phylogenetic Tree Inference with Tropical Axial Attention 2026-05-12 cs.LG;q-bio.PE q-bio.PE https://arxiv.org/abs/2605.13894 False False 2605.13897 Attention-Based Multimodal Survival Prediction with Cross-Modal Bilinear Fusion 2026-05-12 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.13897 False False 2605.13899 Frequency-Space Mechanics: A Sequence and Coordinate-Free Representation for Protein Function Prediction 2026-05-12 q-bio.BM;q-bio.QM q-bio.BM https://arxiv.org/abs/2605.13899 False False 2605.13902 A senescent-immune reserve niche model for incomplete lobular involution in the aging breast 2026-05-12 q-bio.TO q-bio.TO https://arxiv.org/abs/2605.13902 False False 2605.12784 ToolMol: Evolutionary Agentic Framework for Multi-objective Drug Discovery 2026-05-12 cs.LG;cs.NE;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.12784 False False 2605.12784 ToolMol: Evolutionary Agentic Framework for Multi-objective Drug Discovery 2026-05-12 cs.LG;cs.NE;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.12784 False False 2605.13893 From Organization to Viability: A Multi-Level Analysis of Gait Dynamics Under Occlusal Constraint 2026-05-12 q-bio.NC;q-bio.OT q-bio.NC https://arxiv.org/abs/2605.13893 False False 2605.13894 Phylogenetic Tree Inference with Tropical Axial Attention 2026-05-12 cs.LG;q-bio.PE q-bio.PE https://arxiv.org/abs/2605.13894 False False 2605.13897 Attention-Based Multimodal Survival Prediction with Cross-Modal Bilinear Fusion 2026-05-12 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.13897 False False 2605.13899 Frequency-Space Mechanics: A Sequence and Coordinate-Free Representation for Protein Function Prediction 2026-05-12 q-bio.BM;q-bio.QM q-bio.BM https://arxiv.org/abs/2605.13899 False False 2605.13902 A senescent-immune reserve niche model for incomplete lobular involution in the aging breast 2026-05-12 q-bio.TO q-bio.TO https://arxiv.org/abs/2605.13902 False False 2605.11885 From Clever Hans to Scientific Discovery: Interpreting EEG Foundational Transformers with LRP 2026-05-12 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.11885 False False 2605.11885 From Clever Hans to Scientific Discovery: Interpreting EEG Foundational Transformers with LRP 2026-05-12 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.11885 False False 2605.16392 Bridging the Modality Bottleneck in Pathology MIL through Virtual Molecular Staining 2026-05-12 cs.CV;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.16392 False False 2605.12485 Letting the neural code speak: Automated characterization of monkey visual neurons through human language 2026-05-12 q-bio.NC;q-bio.QM q-bio.NC https://arxiv.org/abs/2605.12485 False False 2605.16392 Bridging the Modality Bottleneck in Pathology MIL through Virtual Molecular Staining 2026-05-12 cs.CV;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.16392 False False 2605.12485 Letting the neural code speak: Automated characterization of monkey visual neurons through human language 2026-05-12 q-bio.NC;q-bio.QM q-bio.NC https://arxiv.org/abs/2605.12485 False False 2605.18831 Towards Discovery of Polymers for Insulin Delivery via Physics-Grounded Agentic Workflows 2026-05-12 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.18831 False False 2605.18831 Towards Discovery of Polymers for Insulin Delivery via Physics-Grounded Agentic Workflows 2026-05-12 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.18831 False False 2605.23960 Learning Protein Structure-Function Relationships through Knowledge-guided Representation Decomposition 2026-05-12 cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2605.23960 False False 2605.23961 Multimodal Alignment and Preference Optimization for Zero-Shot Conditional RNA Generation 2026-05-12 cs.AI;cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2605.23961 False False 2605.23960 Learning Protein Structure-Function Relationships through Knowledge-guided Representation Decomposition 2026-05-12 cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2605.23960 False False 2605.23961 Multimodal Alignment and Preference Optimization for Zero-Shot Conditional RNA Generation 2026-05-12 cs.AI;cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2605.23961 False False 2605.13893 From Organization to Viability: A Multi-Level Analysis of Gait Dynamics Under Occlusal Constraint 2026-05-12 q-bio.NC;q-bio.OT q-bio.NC https://arxiv.org/abs/2605.13893 False False 2605.13893 From Organization to Viability: A Multi-Level Analysis of Gait Dynamics Under Occlusal Constraint 2026-05-12 q-bio.NC;q-bio.OT q-bio.NC https://arxiv.org/abs/2605.13893 False False 2605.13893 From Organization to Viability: A Multi-Level Analysis of Gait Dynamics Under Occlusal Constraint 2026-05-12 q-bio.NC;q-bio.OT q-bio.NC https://arxiv.org/abs/2605.13893 False False 2605.13893 From Organization to Viability: A Multi-Level Analysis of Gait Dynamics Under Occlusal Constraint 2026-05-12 q-bio.NC;q-bio.OT q-bio.NC https://arxiv.org/abs/2605.13893 False False 2605.13894 Phylogenetic Tree Inference with Tropical Axial Attention 2026-05-12 cs.LG;q-bio.PE q-bio.PE https://arxiv.org/abs/2605.13894 False False 2605.13894 Phylogenetic Tree Inference with Tropical Axial Attention 2026-05-12 cs.LG;q-bio.PE q-bio.PE https://arxiv.org/abs/2605.13894 False False 2605.09964 Learning the Interaction Prior for Protein-Protein Interaction Prediction: A Model-Agnostic Approach 2026-05-11 cs.AI;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.09964 False False 2605.09981 Yeti: A compact protein structure tokenizer for reconstruction and multi-modal generation 2026-05-11 cs.AI;q-bio.BM q-bio.BM https://arxiv.org/abs/2605.09981 False False 2605.10178 Joint sparse coding and temporal dynamics support context reconfiguration 2026-05-11 cs.LG;cs.NE;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.10178 False False 2605.10310 Positive Alignment: Artificial Intelligence for Human Flourishing 2026-05-11 cs.AI;cs.CY;cs.HC;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.10310 False False 2605.10356 Cortico-cerebellar modularity as an architectural inductive bias for efficient temporal learning 2026-05-11 q-bio.NC q-bio.NC https://arxiv.org/abs/2605.10356 False False 2605.10420 Travelling waves of invasion in microbial communities with phenotypic switching 2026-05-11 physics.bio-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2605.10420 False False 2605.10617 Logarithmic scaling of selective sweep curves: from tents to houses 2026-05-11 math.PR;q-bio.PE q-bio.PE https://arxiv.org/abs/2605.10617 False False 2605.10644 Susceptible-Infected-Susceptible Model with Mitigation on Scale-Free Networks 2026-05-11 physics.stat-mech;q-bio.PE q-bio.PE https://arxiv.org/abs/2605.10644 False False 2605.10818 On periodic distributed representations using Fourier embeddings 2026-05-11 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.10818 False False 2605.10840 Clin-JEPA: A Multi-Phase Co-Training Framework for Joint-Embedding Predictive Pretraining on EHR Patient Trajectories 2026-05-11 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.10840 False False 2605.10876 AssayBench: An Assay-Level Virtual Cell Benchmark for LLMs and Agents 2026-05-11 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.10876 False False 2605.09981 Yeti: A compact protein structure tokenizer for reconstruction and multi-modal generation 2026-05-11 cs.AI;q-bio.BM q-bio.BM https://arxiv.org/abs/2605.09981 False False 2605.10178 Joint sparse coding and temporal dynamics support context reconfiguration 2026-05-11 cs.LG;cs.NE;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.10178 False False 2605.10310 Positive Alignment: Artificial Intelligence for Human Flourishing 2026-05-11 cs.AI;cs.CY;cs.HC;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.10310 False False 2605.10356 Cortico-cerebellar modularity as an architectural inductive bias for efficient temporal learning 2026-05-11 q-bio.NC q-bio.NC https://arxiv.org/abs/2605.10356 False False 2605.10420 Travelling waves of invasion in microbial communities with phenotypic switching 2026-05-11 physics.bio-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2605.10420 False False 2605.10617 Logarithmic scaling of selective sweep curves: from tents to houses 2026-05-11 math.PR;q-bio.PE q-bio.PE https://arxiv.org/abs/2605.10617 False False 2605.10644 Susceptible-Infected-Susceptible Model with Mitigation on Scale-Free Networks 2026-05-11 physics.stat-mech;q-bio.PE q-bio.PE https://arxiv.org/abs/2605.10644 False False 2605.10876 AssayBench: An Assay-Level Virtual Cell Benchmark for LLMs and Agents 2026-05-11 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.10876 False False 2605.11189 Deep Learning for Protein Complex Prediction and Design 2026-05-11 cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2605.11189 False False 2605.11197 The Same Problem by Different Names: Unifying Regression Dilution and Regression to the Mean 2026-05-11 physics.data-an;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.11197 False False 2605.11221 Beyond Manual Curation: Augmenting Targeted Protein Degradation Databases via Agentic Literature Extraction Workflows 2026-05-11 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.11221 False False 2605.11258 Unlocking LLM Creativity in Science through Analogical Reasoning 2026-05-11 cs.AI;cs.CL;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.11258 False False 2605.09964 Learning the Interaction Prior for Protein-Protein Interaction Prediction: A Model-Agnostic Approach 2026-05-11 cs.AI;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.09964 False False 2605.10840 Clin-JEPA: A Multi-Phase Co-Training Framework for Joint-Embedding Predictive Pretraining on EHR Patient Trajectories 2026-05-11 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.10840 False False 2605.10818 On periodic distributed representations using Fourier embeddings 2026-05-11 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.10818 False False 2605.09964 Learning the Interaction Prior for Protein-Protein Interaction Prediction: A Model-Agnostic Approach 2026-05-11 cs.AI;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.09964 False False 2605.10840 Clin-JEPA: A Multi-Phase Co-Training Framework for Joint-Embedding Predictive Pretraining on EHR Patient Trajectories 2026-05-11 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.10840 False False 2605.11189 Deep Learning for Protein Complex Prediction and Design 2026-05-11 cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2605.11189 False False 2605.11197 The Same Problem by Different Names: Unifying Regression Dilution and Regression to the Mean 2026-05-11 physics.data-an;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.11197 False False 2605.11221 Beyond Manual Curation: Augmenting Targeted Protein Degradation Databases via Agentic Literature Extraction Workflows 2026-05-11 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.11221 False False 2605.11258 Unlocking LLM Creativity in Science through Analogical Reasoning 2026-05-11 cs.AI;cs.CL;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.11258 False False 2605.10818 On periodic distributed representations using Fourier embeddings 2026-05-11 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.10818 False False 2605.13883 A general classification of the replication dynamics with a unique fixed point in the interior of simplex $S_N$ 2026-05-11 cs.GT;cs.MA;q-bio.PE q-bio.PE https://arxiv.org/abs/2605.13883 False False 2605.13884 Consciousness as Uncommon Self-Knowledge: A Synergistic Information Framework 2026-05-11 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.13884 False False 2605.10310 Positive Alignment: Artificial Intelligence for Human Flourishing 2026-05-11 cs.AI;cs.CY;cs.HC;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.10310 False False 2605.10310 Positive Alignment: Artificial Intelligence for Human Flourishing 2026-05-11 cs.AI;cs.CY;cs.HC;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.10310 False False 2605.13884 Consciousness as Uncommon Self-Knowledge: A Synergistic Information Framework 2026-05-11 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.13884 False False 2605.13883 A general classification of the replication dynamics with a unique fixed point in the interior of simplex $S_N$ 2026-05-11 cs.GT;cs.MA;q-bio.PE q-bio.PE https://arxiv.org/abs/2605.13883 False False 2605.13883 A general classification of the replication dynamics with a unique fixed point in the interior of simplex $S_N$ 2026-05-11 cs.GT;cs.MA;q-bio.PE q-bio.PE https://arxiv.org/abs/2605.13883 False False 2605.11197 The Same Problem by Different Names: Unifying Regression Dilution and Regression to the Mean 2026-05-11 physics.data-an;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.11197 False False 2605.11197 The Same Problem by Different Names: Unifying Regression Dilution and Regression to the Mean 2026-05-11 physics.data-an;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.11197 False False 2605.10840 Clin-JEPA: A Multi-Phase Co-Training Framework for Joint-Embedding Predictive Pretraining on EHR Patient Trajectories 2026-05-11 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.10840 False False 2605.10840 Clin-JEPA: A Multi-Phase Co-Training Framework for Joint-Embedding Predictive Pretraining on EHR Patient Trajectories 2026-05-11 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.10840 False False 2605.10310 Positive Alignment: Artificial Intelligence for Human Flourishing 2026-05-11 cs.AI;cs.CY;cs.HC;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.10310 False False 2605.10310 Positive Alignment: Artificial Intelligence for Human Flourishing 2026-05-11 cs.AI;cs.CY;cs.HC;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.10310 False False 2605.10840 Clin-JEPA: A Multi-Phase Co-Training Framework for Joint-Embedding Predictive Pretraining on EHR Patient Trajectories 2026-05-11 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.10840 False False 2605.10840 Clin-JEPA: A Multi-Phase Co-Training Framework for Joint-Embedding Predictive Pretraining on EHR Patient Trajectories 2026-05-11 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.10840 False False 2605.09243 How Much is Brain Data Worth for Machine Learning? 2026-05-10 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.09243 False False 2605.09255 Dual Fear Mechanisms Shaping Stochastic Population Dynamics under the Allee Effect 2026-05-10 physics.stat-mech;q-bio.PE q-bio.PE https://arxiv.org/abs/2605.09255 False False 2605.09384 LiteMedCoT-VL: Parameter-Efficient Adaptation for Medical Visual Question Answering 2026-05-10 cs.AI;cs.CV;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.09384 False False 2605.09409 Predictive and feedback signals differently shape the formation of group-level and individualized language representations 2026-05-10 q-bio.NC q-bio.NC https://arxiv.org/abs/2605.09409 False False 2605.09506 Accelerating Bayesian Phylogenetic Inference via Delayed Acceptance Sequential Monte Carlo with Random Forest Surrogates 2026-05-10 q-bio.QM;stat.CO;stat.ME q-bio.QM https://arxiv.org/abs/2605.09506 False False 2605.09597 Interactively visualizing biological multilayer networks using MiRA 2026-05-10 cs.SI;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.09597 False False 2605.09704 Coexistence of trapped and flow-transported nuclei enables fast pigeon post communication across multinucleated cell 2026-05-10 physics.bio-ph;q-bio.CB q-bio.CB https://arxiv.org/abs/2605.09704 False False 2605.09770 Encoding and Decoding Temporal Signals with Spiking Bandpass Wavelets 2026-05-10 cs.NE;eess.SP;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.09770 False False 2605.09810 TD3B: Transition-Directed Discrete Diffusion for Allosteric Binder Generation 2026-05-10 cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2605.09810 False False 2605.09243 How Much is Brain Data Worth for Machine Learning? 2026-05-10 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.09243 False False 2605.09255 Dual Fear Mechanisms Shaping Stochastic Population Dynamics under the Allee Effect 2026-05-10 physics.stat-mech;q-bio.PE q-bio.PE https://arxiv.org/abs/2605.09255 False False 2605.09384 LiteMedCoT-VL: Parameter-Efficient Adaptation for Medical Visual Question Answering 2026-05-10 cs.AI;cs.CV;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.09384 False False 2605.09409 Predictive and feedback signals differently shape the formation of group-level and individualized language representations 2026-05-10 q-bio.NC q-bio.NC https://arxiv.org/abs/2605.09409 False False 2605.09506 Accelerating Bayesian Phylogenetic Inference via Delayed Acceptance Sequential Monte Carlo with Random Forest Surrogates 2026-05-10 q-bio.QM;stat.CO;stat.ME q-bio.QM https://arxiv.org/abs/2605.09506 False False 2605.09597 Interactively visualizing biological multilayer networks using MiRA 2026-05-10 cs.SI;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.09597 False False 2605.09704 Coexistence of trapped and flow-transported nuclei enables fast pigeon post communication across multinucleated cell 2026-05-10 physics.bio-ph;q-bio.CB q-bio.CB https://arxiv.org/abs/2605.09704 False False 2605.09770 Encoding and Decoding Temporal Signals with Spiking Bandpass Wavelets 2026-05-10 cs.NE;eess.SP;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.09770 False False 2605.09810 TD3B: Transition-Directed Discrete Diffusion for Allosteric Binder Generation 2026-05-10 cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2605.09810 False False 2605.11022 SCOPE: Siamese Contrastive Operon Pair Embeddings for Functional Sequence Representation and Classification 2026-05-10 cs.AI;cs.ET;cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2605.11022 False False 2605.11022 SCOPE: Siamese Contrastive Operon Pair Embeddings for Functional Sequence Representation and Classification 2026-05-10 cs.AI;cs.ET;cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2605.11022 False False 2605.09597 Interactively visualizing biological multilayer networks using MiRA 2026-05-10 cs.SI;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.09597 False False 2605.09597 Interactively visualizing biological multilayer networks using MiRA 2026-05-10 cs.SI;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.09597 False False 2605.22838 Detecting and Correcting Sample-by-Sample Scale Distortion in RNA Sequencing Data 2026-05-10 math.OC;q-bio.GN;stat.AP q-bio.GN https://arxiv.org/abs/2605.22838 False False 2605.22838 Detecting and Correcting Sample-by-Sample Scale Distortion in RNA Sequencing Data 2026-05-10 math.OC;q-bio.GN;stat.AP q-bio.GN https://arxiv.org/abs/2605.22838 False False 2605.23952 Machine Psychometrics: A Mathematical Psychology of Artificial Intelligence 2026-05-10 cs.AI;cs.CL;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.23952 False False 2605.23952 Machine Psychometrics: A Mathematical Psychology of Artificial Intelligence 2026-05-10 cs.AI;cs.CL;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.23952 False False 2605.08648 FLUX: Geometry-Aware Longitudinal Flow Matching with Mixture of Experts 2026-05-09 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.08648 False False 2605.08659 Pushing Biomolecular Utility-Diversity Frontiers with Supergroup Relative Policy Optimization 2026-05-09 cs.CE;q-bio.BM q-bio.BM https://arxiv.org/abs/2605.08659 False False 2605.08711 Automated Optical Density Normalization for Myelin Quantification: Cross-Modal Validation with 7T Ex Vivo MRI 2026-05-09 physics.med-ph;q-bio.NC;q-bio.QM q-bio.NC https://arxiv.org/abs/2605.08711 False False 2605.08815 MicroFuse: Protein-to-Genome Expert Fusion for Microbial Operon Reasoning 2026-05-09 cs.LG;q-bio.BM;q-bio.GN;q-bio.QM q-bio.BM https://arxiv.org/abs/2605.08815 False False 2605.08953 A putative, computationally stable structure of homotrimeric BP180/collagen XVII 2026-05-09 physics.bio-ph;physics.comp-ph;q-bio.BM;q-bio.QM q-bio.BM https://arxiv.org/abs/2605.08953 False False 2605.08967 Condensation Transition in Entropy-Constrained Probability Spaces 2026-05-09 math.MP;physics.math-ph;physics.stat-mech;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.08967 False False 2605.09152 Meow-Omni 1: A Multimodal Large Language Model for Feline Ethology 2026-05-09 cs.CL;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.09152 False False 2605.08648 FLUX: Geometry-Aware Longitudinal Flow Matching with Mixture of Experts 2026-05-09 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.08648 False False 2605.08659 Pushing Biomolecular Utility-Diversity Frontiers with Supergroup Relative Policy Optimization 2026-05-09 cs.CE;q-bio.BM q-bio.BM https://arxiv.org/abs/2605.08659 False False 2605.08711 Automated Optical Density Normalization for Myelin Quantification: Cross-Modal Validation with 7T Ex Vivo MRI 2026-05-09 physics.med-ph;q-bio.NC;q-bio.QM q-bio.NC https://arxiv.org/abs/2605.08711 False False 2605.08815 MicroFuse: Protein-to-Genome Expert Fusion for Microbial Operon Reasoning 2026-05-09 cs.LG;q-bio.BM;q-bio.GN;q-bio.QM q-bio.BM https://arxiv.org/abs/2605.08815 False False 2605.08953 A putative, computationally stable structure of homotrimeric BP180/collagen XVII 2026-05-09 physics.bio-ph;physics.comp-ph;q-bio.BM;q-bio.QM q-bio.BM https://arxiv.org/abs/2605.08953 False False 2605.08967 Condensation Transition in Entropy-Constrained Probability Spaces 2026-05-09 math.MP;physics.math-ph;physics.stat-mech;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.08967 False False 2605.09152 Meow-Omni 1: A Multimodal Large Language Model for Feline Ethology 2026-05-09 cs.CL;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.09152 False False 2605.10978 VibeProteinBench: An Evaluation Benchmark for Language-interfaced Vibe Protein Design 2026-05-09 q-bio.QM q-bio.QM https://arxiv.org/abs/2605.10978 False False 2605.10985 Structural Interpretations of Protein Language Model Representations via Differentiable Graph Partitioning 2026-05-09 cs.AI;cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2605.10985 False False 2605.10994 Internally triggered retrospective learning in neural networks 2026-05-09 q-bio.NC;q-bio.OT q-bio.NC https://arxiv.org/abs/2605.10994 False False 2605.10985 Structural Interpretations of Protein Language Model Representations via Differentiable Graph Partitioning 2026-05-09 cs.AI;cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2605.10985 False False 2605.10994 Internally triggered retrospective learning in neural networks 2026-05-09 q-bio.NC;q-bio.OT q-bio.NC https://arxiv.org/abs/2605.10994 False False 2605.10978 VibeProteinBench: An Evaluation Benchmark for Language-interfaced Vibe Protein Design 2026-05-09 q-bio.QM q-bio.QM https://arxiv.org/abs/2605.10978 False False 2605.12543 Why the Unfinished Keeps Returning: Canxianization and the Dynamics of Conscious Priority 2026-05-09 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.12543 False False 2605.10978 VibeProteinBench: An Evaluation Benchmark for Language-interfaced Vibe Protein Design 2026-05-09 q-bio.QM q-bio.QM https://arxiv.org/abs/2605.10978 False False 2605.12543 Why the Unfinished Keeps Returning: Canxianization and the Dynamics of Conscious Priority 2026-05-09 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.12543 False False 2605.08659 Pushing Biomolecular Utility-Diversity Frontiers with Supergroup Relative Policy Optimization 2026-05-09 cs.CE;q-bio.BM q-bio.BM https://arxiv.org/abs/2605.08659 False False 2605.10978 VibeProteinBench: An Evaluation Benchmark for Language-interfaced Vibe Protein Design 2026-05-09 q-bio.QM q-bio.QM https://arxiv.org/abs/2605.10978 False False 2605.10978 VibeProteinBench: An Evaluation Benchmark for Language-interfaced Vibe Protein Design 2026-05-09 q-bio.QM q-bio.QM https://arxiv.org/abs/2605.10978 False False 2605.08659 Pushing Biomolecular Utility-Diversity Frontiers with Supergroup Relative Policy Optimization 2026-05-09 cs.CE;q-bio.BM q-bio.BM https://arxiv.org/abs/2605.08659 False False 2605.08659 Pushing Biomolecular Utility-Diversity Frontiers with Supergroup Relative Policy Optimization 2026-05-09 cs.CE;q-bio.BM q-bio.BM https://arxiv.org/abs/2605.08659 False False 2605.21506 Canonical Functionalism: Defining Functional Structure without Observer-Relative Semantic Maps 2026-05-09 cs.NE;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.21506 False False 2605.21506 Canonical Functionalism: Defining Functional Structure without Observer-Relative Semantic Maps 2026-05-09 cs.NE;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.21506 False False 2605.07433 Inference of Qualitative Models from Steady-State Data via Weighted MaxSMT 2026-05-08 cs.LG;cs.LO;q-bio.MN q-bio.MN https://arxiv.org/abs/2605.07433 False False 2605.07439 CA-DEL: An Open Multi-Target, Multi-Modal Benchmark for Learning from DNA-Encoded Library Screens 2026-05-08 q-bio.BM q-bio.BM https://arxiv.org/abs/2605.07439 False False 2605.07498 Modeling the Impact of Exposed Cases in a Hantavirus Outbreak on a Cruise Ship 2026-05-08 cs.CY;q-bio.PE q-bio.PE https://arxiv.org/abs/2605.07498 False False 2605.07554 ProteinJEPA: Latent prediction complements protein language models 2026-05-08 cs.AI;cs.LG;q-bio.BM;stat.ML q-bio.BM https://arxiv.org/abs/2605.07554 False False 2605.07608 GoForth: Language Models for RNA Design under Structure, Sequence, and Coding Constraints 2026-05-08 q-bio.BM;q-bio.QM q-bio.BM https://arxiv.org/abs/2605.07608 False False 2605.07614 Predictive-Switching Control of Stochastic Gene Regulatory Networks: A Contractive PIDE Framework 2026-05-08 math.DS;q-bio.MN q-bio.MN https://arxiv.org/abs/2605.07614 False False 2605.07746 Flow Matching for Count Data 2026-05-08 cs.LG;q-bio.QM;stat.ML q-bio.QM https://arxiv.org/abs/2605.07746 False False 2605.07838 PPI-Net connects molecular protein interactions to functional processes in disease 2026-05-08 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.07838 False False 2605.08014 Dynamical mechanisms of flexible phase-locking in cortical theta oscillators 2026-05-08 math.DS;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.08014 False False 2605.08019 Reason to Play: Behavioral and Brain Alignment Between Frontier LRMs and Human Game Learners 2026-05-08 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.08019 False False 2605.07433 Inference of Qualitative Models from Steady-State Data via Weighted MaxSMT 2026-05-08 cs.LG;cs.LO;q-bio.MN q-bio.MN https://arxiv.org/abs/2605.07433 False False 2605.07439 CA-DEL: An Open Multi-Target, Multi-Modal Benchmark for Learning from DNA-Encoded Library Screens 2026-05-08 q-bio.BM q-bio.BM https://arxiv.org/abs/2605.07439 False False 2605.07498 Modeling the Impact of Exposed Cases in a Hantavirus Outbreak on a Cruise Ship 2026-05-08 cs.CY;q-bio.PE q-bio.PE https://arxiv.org/abs/2605.07498 False False 2605.07554 ProteinJEPA: Latent prediction complements protein language models 2026-05-08 cs.AI;cs.LG;q-bio.BM;stat.ML q-bio.BM https://arxiv.org/abs/2605.07554 False False 2605.07608 GoForth: Language Models for RNA Design under Structure, Sequence, and Coding Constraints 2026-05-08 q-bio.BM;q-bio.QM q-bio.BM https://arxiv.org/abs/2605.07608 False False 2605.07614 Predictive-Switching Control of Stochastic Gene Regulatory Networks: A Contractive PIDE Framework 2026-05-08 math.DS;q-bio.MN q-bio.MN https://arxiv.org/abs/2605.07614 False False 2605.07746 Flow Matching for Count Data 2026-05-08 cs.LG;q-bio.QM;stat.ML q-bio.QM https://arxiv.org/abs/2605.07746 False False 2605.07838 PPI-Net connects molecular protein interactions to functional processes in disease 2026-05-08 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.07838 False False 2605.08014 Dynamical mechanisms of flexible phase-locking in cortical theta oscillators 2026-05-08 math.DS;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.08014 False False 2605.08019 Reason to Play: Behavioral and Brain Alignment Between Frontier LRMs and Human Game Learners 2026-05-08 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.08019 False False 2605.08345 Quantitative ergodicity for gene regulatory networks with transcriptional bursting 2026-05-08 math.PR;q-bio.MN q-bio.MN https://arxiv.org/abs/2605.08345 False False 2605.08458 Neurally-plausible radial basis kernels using distributed Fourier embeddings 2026-05-08 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.08458 False False 2605.08495 NeuralBench: A Unifying Framework to Benchmark NeuroAI Models 2026-05-08 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.08495 False False 2605.08497 MeTime: An R package for reproducible longitudinal metabolomics data analysis 2026-05-08 cs.MS;q-bio.BM;q-bio.QM q-bio.BM https://arxiv.org/abs/2605.08497 False False 2605.08566 MicroDiffuse3D: A Foundation Model for 3D Microscopy Imaging Restoration 2026-05-08 cs.CV;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.08566 False False 2605.08345 Quantitative ergodicity for gene regulatory networks with transcriptional bursting 2026-05-08 math.PR;q-bio.MN q-bio.MN https://arxiv.org/abs/2605.08345 False False 2605.08458 Neurally-plausible radial basis kernels using distributed Fourier embeddings 2026-05-08 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.08458 False False 2605.08495 NeuralBench: A Unifying Framework to Benchmark NeuroAI Models 2026-05-08 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.08495 False False 2605.08497 MeTime: An R package for reproducible longitudinal metabolomics data analysis 2026-05-08 cs.MS;q-bio.BM;q-bio.QM q-bio.BM https://arxiv.org/abs/2605.08497 False False 2605.08566 MicroDiffuse3D: A Foundation Model for 3D Microscopy Imaging Restoration 2026-05-08 cs.CV;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.08566 False False 2605.07433 Inference of Qualitative Models from Steady-State Data via Weighted MaxSMT 2026-05-08 cs.LG;cs.LO;q-bio.MN q-bio.MN https://arxiv.org/abs/2605.07433 False False 2605.07433 Inference of Qualitative Models from Steady-State Data via Weighted MaxSMT 2026-05-08 cs.LG;cs.LO;q-bio.MN q-bio.MN https://arxiv.org/abs/2605.07433 False False 2605.16356 Microdroplets Fail to Retain Exhaled Volatile Biomarkers within a Single Breath 2026-05-08 physics.med-ph;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.16356 False False 2605.16356 Microdroplets Fail to Retain Exhaled Volatile Biomarkers within a Single Breath 2026-05-08 physics.med-ph;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.16356 False False 2605.21502 Graph neural network explanations reveal a topological signature of disease-associated hubs in biological networks 2026-05-08 cs.AI;cs.LG;q-bio.MN q-bio.MN https://arxiv.org/abs/2605.21502 False False 2605.21502 Graph neural network explanations reveal a topological signature of disease-associated hubs in biological networks 2026-05-08 cs.AI;cs.LG;q-bio.MN q-bio.MN https://arxiv.org/abs/2605.21502 False False 2607.18249 MechAInistic: An LLM-guided Multi-Agent System for Reasoning over Genome-Scale Constraint-Based Metabolic Models 2026-05-08 cs.AI;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.18249 False False 2607.18249 MechAInistic: An LLM-guided Multi-Agent System for Reasoning over Genome-Scale Constraint-Based Metabolic Models 2026-05-08 cs.AI;q-bio.QM q-bio.QM https://arxiv.org/abs/2607.18249 False False 2605.05706 Resolving the bias-precision paradox with stochastic causal representation learning for personalized medicine 2026-05-07 cs.AI;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.05706 False False 2605.05778 Planar morphometry via functional shape data analysis and quasi-conformal mappings 2026-05-07 cs.CG;cs.NA;math.NA;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.05778 False False 2605.05829 MP2D: Constrained Monte Carlo Tree-Guided Diffusion for Multi-Objective Protein Sequence Design 2026-05-07 q-bio.BM q-bio.BM https://arxiv.org/abs/2605.05829 False False 2605.05907 Decoding Alignment without Encoding Alignment: A critique of similarity analysis in neuroscience 2026-05-07 q-bio.NC q-bio.NC https://arxiv.org/abs/2605.05907 False False 2605.05966 Towards a unified framework for multiple stable states in ecological systems 2026-05-07 q-bio.PE q-bio.PE https://arxiv.org/abs/2605.05966 False False 2605.05985 BioResearcher: Scenario-Guided Multi-Agent for Translational Medicine 2026-05-07 cs.AI;cs.MA;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.05985 False False 2605.06226 A Versatile AI Agent for Rare Disease Diagnosis and Risk Gene Prioritization 2026-05-07 cs.AI;q-bio.GN q-bio.GN https://arxiv.org/abs/2605.06226 False False 2605.06243 A $μ$-distance for semidirected orchard phylogenetic networks 2026-05-07 math.CO;q-bio.PE q-bio.PE https://arxiv.org/abs/2605.06243 False False 2605.06301 Higher-order interactions in ecology can be hidden in plain sight 2026-05-07 physics.soc-ph;physics.stat-mech;q-bio.PE q-bio.PE https://arxiv.org/abs/2605.06301 False False 2605.06304 A multi-scale information geometry reveals the structure of mutual information in neural populations 2026-05-07 q-bio.NC q-bio.NC https://arxiv.org/abs/2605.06304 0.7578 0.7538 True 8 8.15 True 2605.06420 Beyond Object-Level Alignment: Do Brains and DNNs Preserve the Same Transformations? 2026-05-07 q-bio.NC q-bio.NC https://arxiv.org/abs/2605.06420 False False 2605.06456 Activation in Vesicle-Mediated Signaling Shaped by Batch Arrival Statistics 2026-05-07 physics.stat-mech;q-bio.MN;q-bio.SC q-bio.MN https://arxiv.org/abs/2605.06456 False False 2605.06562 Feature Dimensionality Outweighs Model Complexity in Breast Cancer Subtype Classification Using TCGA-BRCA Gene Expression Data 2026-05-07 cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2605.06562 False False 2605.06598 Mathematical Modeling of Early Embryonic Cell Cycles of Drosophila melanogaster 2026-05-07 q-bio.CB;q-bio.QM q-bio.CB https://arxiv.org/abs/2605.06598 False False 2605.05706 Resolving the bias-precision paradox with stochastic causal representation learning for personalized medicine 2026-05-07 cs.AI;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.05706 False False 2605.05778 Planar morphometry via functional shape data analysis and quasi-conformal mappings 2026-05-07 cs.CG;cs.NA;math.NA;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.05778 False False 2605.05829 MP2D: Constrained Monte Carlo Tree-Guided Diffusion for Multi-Objective Protein Sequence Design 2026-05-07 q-bio.BM q-bio.BM https://arxiv.org/abs/2605.05829 False False 2605.05907 Decoding Alignment without Encoding Alignment: A critique of similarity analysis in neuroscience 2026-05-07 q-bio.NC q-bio.NC https://arxiv.org/abs/2605.05907 False False 2605.05966 Towards a unified framework for multiple stable states in ecological systems 2026-05-07 q-bio.PE q-bio.PE https://arxiv.org/abs/2605.05966 False False 2605.05985 BioResearcher: Scenario-Guided Multi-Agent for Translational Medicine 2026-05-07 cs.AI;cs.MA;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.05985 False False 2605.06226 A Versatile AI Agent for Rare Disease Diagnosis and Risk Gene Prioritization 2026-05-07 cs.AI;q-bio.GN q-bio.GN https://arxiv.org/abs/2605.06226 False False 2605.06243 A $μ$-distance for semidirected orchard phylogenetic networks 2026-05-07 math.CO;q-bio.PE q-bio.PE https://arxiv.org/abs/2605.06243 False False 2605.06301 Higher-order interactions in ecology can be hidden in plain sight 2026-05-07 physics.soc-ph;physics.stat-mech;q-bio.PE q-bio.PE https://arxiv.org/abs/2605.06301 False False 2605.06304 A multi-scale information geometry reveals the structure of mutual information in neural populations 2026-05-07 q-bio.NC q-bio.NC https://arxiv.org/abs/2605.06304 0.7578 0.7538 True 8 8.15 True 2605.06420 Beyond Object-Level Alignment: Do Brains and DNNs Preserve the Same Transformations? 2026-05-07 q-bio.NC q-bio.NC https://arxiv.org/abs/2605.06420 False False 2605.06456 Activation in Vesicle-Mediated Signaling Shaped by Batch Arrival Statistics 2026-05-07 physics.stat-mech;q-bio.MN;q-bio.SC q-bio.MN https://arxiv.org/abs/2605.06456 False False 2605.06562 Feature Dimensionality Outweighs Model Complexity in Breast Cancer Subtype Classification Using TCGA-BRCA Gene Expression Data 2026-05-07 cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2605.06562 False False 2605.06598 Mathematical Modeling of Early Embryonic Cell Cycles of Drosophila melanogaster 2026-05-07 q-bio.CB;q-bio.QM q-bio.CB https://arxiv.org/abs/2605.06598 False False 2605.06728 OmicsLM: A Multimodal Large Language Model for Multi-Sample Omics Reasoning 2026-05-07 cs.AI;q-bio.CB;q-bio.GN q-bio.CB https://arxiv.org/abs/2605.06728 False False 2605.06762 A Linear-Transformer Hybrid for SNP-Based Genotype-to-Phenotype Prediction in Grapevine 2026-05-07 cs.AI;q-bio.GN q-bio.GN https://arxiv.org/abs/2605.06762 False False 2605.06879 Better Protein Function Prediction by Modeling Survivorship Bias 2026-05-07 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.06879 False False 2605.06995 Partitioning Neural Co-Variability 2026-05-07 q-bio.NC;q-bio.QM q-bio.NC https://arxiv.org/abs/2605.06995 False False 2605.07007 Essential Role of Extrinsic Noise in Models of E. coli Division Control 2026-05-07 physics.bio-ph;q-bio.CB;q-bio.PE q-bio.CB https://arxiv.org/abs/2605.07007 False False 2605.07026 Learning Cross-Atlas Consistent Brain Disorder Representations via Disentangled Multi-Atlas Functional Connectivity Learning 2026-05-07 cs.AI;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.07026 False False 2605.07028 Quo nomine vis vocari? A random-copying model explains the temporal sequence of papal names 2026-05-07 physics.soc-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2605.07028 False False 2605.06728 OmicsLM: A Multimodal Large Language Model for Multi-Sample Omics Reasoning 2026-05-07 cs.AI;q-bio.CB;q-bio.GN q-bio.CB https://arxiv.org/abs/2605.06728 False False 2605.06762 A Linear-Transformer Hybrid for SNP-Based Genotype-to-Phenotype Prediction in Grapevine 2026-05-07 cs.AI;q-bio.GN q-bio.GN https://arxiv.org/abs/2605.06762 False False 2605.06879 Better Protein Function Prediction by Modeling Survivorship Bias 2026-05-07 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.06879 False False 2605.06995 Partitioning Neural Co-Variability 2026-05-07 q-bio.NC;q-bio.QM q-bio.NC https://arxiv.org/abs/2605.06995 False False 2605.07007 Essential Role of Extrinsic Noise in Models of E. coli Division Control 2026-05-07 physics.bio-ph;q-bio.CB;q-bio.PE q-bio.CB https://arxiv.org/abs/2605.07007 False False 2605.07026 Learning Cross-Atlas Consistent Brain Disorder Representations via Disentangled Multi-Atlas Functional Connectivity Learning 2026-05-07 cs.AI;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.07026 False False 2605.07028 Quo nomine vis vocari? A random-copying model explains the temporal sequence of papal names 2026-05-07 physics.soc-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2605.07028 False False 2605.08242 An Explainable Unsupervised-to-Supervised Machine Learning Framework for Dietary Pattern Discovery Using UK National Dietary Survey Data 2026-05-07 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.08242 False False 2605.06226 A Versatile AI Agent for Rare Disease Diagnosis and Risk Gene Prioritization 2026-05-07 cs.AI;q-bio.GN q-bio.GN https://arxiv.org/abs/2605.06226 False False 2605.08242 An Explainable Unsupervised-to-Supervised Machine Learning Framework for Dietary Pattern Discovery Using UK National Dietary Survey Data 2026-05-07 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.08242 False False 2605.06226 A Versatile AI Agent for Rare Disease Diagnosis and Risk Gene Prioritization 2026-05-07 cs.AI;q-bio.GN q-bio.GN https://arxiv.org/abs/2605.06226 False False 2605.05778 Planar morphometry via functional shape data analysis and quasi-conformal mappings 2026-05-07 cs.CG;cs.NA;math.NA;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.05778 False False 2605.05778 Planar morphometry via functional shape data analysis and quasi-conformal mappings 2026-05-07 cs.CG;cs.NA;math.NA;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.05778 False False 2605.18789 Features have life history. And we should care 2026-05-07 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.18789 False False 2605.18789 Features have life history. And we should care 2026-05-07 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.18789 False False 2605.06456 Activation in Vesicle-Mediated Signaling Shaped by Batch Arrival Statistics 2026-05-07 physics.stat-mech;q-bio.MN;q-bio.SC q-bio.MN https://arxiv.org/abs/2605.06456 False False 2605.06456 Activation in Vesicle-Mediated Signaling Shaped by Batch Arrival Statistics 2026-05-07 physics.stat-mech;q-bio.MN;q-bio.SC q-bio.MN https://arxiv.org/abs/2605.06456 False False 2605.04372 A Zero-Inflated Beta Mixture Model for Marginal Mediation Analysis with Compositional Microbiome Mediators 2026-05-06 q-bio.QM;stat.AP;stat.ME q-bio.QM https://arxiv.org/abs/2605.04372 False False 2605.04443 Dissociating spatial frequency reliance from adversarial robustness advantages in neurally guided deep convolutional neural networks 2026-05-06 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.04443 False False 2605.04482 Loop Extrusion Reversal by Condensin Motor is Mediated by Catch Bonds 2026-05-06 physics.bio-ph;physics.soft;q-bio.BM q-bio.BM https://arxiv.org/abs/2605.04482 False False 2605.04498 Algorithmic bottlenecks in evolution: Genetic code, symbolic language, and the Great Filter hypothesis 2026-05-06 q-bio.PE q-bio.PE https://arxiv.org/abs/2605.04498 False False 2605.04636 A Generalized Framework of Antisymmetric Polyspectral Indices for Identifying High-Order Neural Interactions 2026-05-06 q-bio.NC;stat.ME q-bio.NC https://arxiv.org/abs/2605.04636 False False 2605.04762 TCRTransBench: A Comprehensive Benchmark for Bidirectional TCR-Peptide Sequence Generation 2026-05-06 q-bio.CB q-bio.CB https://arxiv.org/abs/2605.04762 False False 2605.04807 A process-based dynamic occupancy model to study range dynamics under non-equilibrium conditions 2026-05-06 q-bio.PE q-bio.PE https://arxiv.org/abs/2605.04807 False False 2605.04882 FairEnc: A Fair Vision-Language Model with Fair Vision and Text Encoders for Glaucoma Detection 2026-05-06 cs.AI;cs.CV;cs.LG;eess.IV;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.04882 False False 2605.04908 Curated AI beats frontier LLMs at pharma asset discovery 2026-05-06 cs.AI;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.04908 False False 2605.04930 When Does Gene Regulatory Network Inference Break? A Controlled Diagnostic Study of Causal and Correlational Methods on Single-Cell Data 2026-05-06 cs.AI;cs.LG;q-bio.GN;q-bio.QM;stat.ML q-bio.GN https://arxiv.org/abs/2605.04930 False False 2605.05091 Think-Aloud Reshapes Automated Cognitive Model Discovery Beyond Behavior 2026-05-06 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.05091 False False 2605.04372 A Zero-Inflated Beta Mixture Model for Marginal Mediation Analysis with Compositional Microbiome Mediators 2026-05-06 q-bio.QM;stat.AP;stat.ME q-bio.QM https://arxiv.org/abs/2605.04372 False False 2605.04443 Dissociating spatial frequency reliance from adversarial robustness advantages in neurally guided deep convolutional neural networks 2026-05-06 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.04443 False False 2605.04482 Loop Extrusion Reversal by Condensin Motor is Mediated by Catch Bonds 2026-05-06 physics.bio-ph;physics.soft;q-bio.BM q-bio.BM https://arxiv.org/abs/2605.04482 False False 2605.04498 Algorithmic bottlenecks in evolution: Genetic code, symbolic language, and the Great Filter hypothesis 2026-05-06 q-bio.PE q-bio.PE https://arxiv.org/abs/2605.04498 False False 2605.04636 A Generalized Framework of Antisymmetric Polyspectral Indices for Identifying High-Order Neural Interactions 2026-05-06 q-bio.NC;stat.ME q-bio.NC https://arxiv.org/abs/2605.04636 False False 2605.04762 TCRTransBench: A Comprehensive Benchmark for Bidirectional TCR-Peptide Sequence Generation 2026-05-06 q-bio.CB q-bio.CB https://arxiv.org/abs/2605.04762 False False 2605.04807 A process-based dynamic occupancy model to study range dynamics under non-equilibrium conditions 2026-05-06 q-bio.PE q-bio.PE https://arxiv.org/abs/2605.04807 False False 2605.04882 FairEnc: A Fair Vision-Language Model with Fair Vision and Text Encoders for Glaucoma Detection 2026-05-06 cs.AI;cs.CV;cs.LG;eess.IV;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.04882 False False 2605.04908 Curated AI beats frontier LLMs at pharma asset discovery 2026-05-06 cs.AI;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.04908 False False 2605.04930 When Does Gene Regulatory Network Inference Break? A Controlled Diagnostic Study of Causal and Correlational Methods on Single-Cell Data 2026-05-06 cs.AI;cs.LG;q-bio.GN;q-bio.QM;stat.ML q-bio.GN https://arxiv.org/abs/2605.04930 False False 2605.05091 Think-Aloud Reshapes Automated Cognitive Model Discovery Beyond Behavior 2026-05-06 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.05091 False False 2605.05259 Enhancing Cryo-EM Density Map Segmentation in Phenix for Improved Atomic Model Building 2026-05-06 cs.AI;physics.mtrl-sci;q-bio.BM;q-bio.QM q-bio.BM https://arxiv.org/abs/2605.05259 False False 2605.05284 Direct From Darwin: Deriving Advanced Optimizers From Evolutionary First Principles 2026-05-06 cs.LG;cs.NE;q-bio.PE;q-bio.QM q-bio.PE https://arxiv.org/abs/2605.05284 False False 2605.05385 Chapter 2: Geometry of the Fitness Surface and Trajectory Dynamics of Replicator Systems 2026-05-06 math.DS;q-bio.PE q-bio.PE https://arxiv.org/abs/2605.05385 0.7682 0.7942 True 6 6.9 False 2605.05464 The Origin of Life in the Light of Evolution 2026-05-06 q-bio.PE q-bio.PE https://arxiv.org/abs/2605.05464 False False 2605.05259 Enhancing Cryo-EM Density Map Segmentation in Phenix for Improved Atomic Model Building 2026-05-06 cs.AI;physics.mtrl-sci;q-bio.BM;q-bio.QM q-bio.BM https://arxiv.org/abs/2605.05259 False False 2605.05284 Direct From Darwin: Deriving Advanced Optimizers From Evolutionary First Principles 2026-05-06 cs.LG;cs.NE;q-bio.PE;q-bio.QM q-bio.PE https://arxiv.org/abs/2605.05284 False False 2605.05385 Chapter 2: Geometry of the Fitness Surface and Trajectory Dynamics of Replicator Systems 2026-05-06 math.DS;q-bio.PE q-bio.PE https://arxiv.org/abs/2605.05385 0.7682 0.7942 True 6 6.9 False 2605.05464 The Origin of Life in the Light of Evolution 2026-05-06 q-bio.PE q-bio.PE https://arxiv.org/abs/2605.05464 False False 2605.05464 The Origin of Life in the Light of Evolution 2026-05-06 q-bio.PE q-bio.PE https://arxiv.org/abs/2605.05464 False False 2605.05284 Direct From Darwin: Deriving Advanced Optimizers From Evolutionary First Principles 2026-05-06 cs.LG;cs.NE;q-bio.PE;q-bio.QM q-bio.PE https://arxiv.org/abs/2605.05284 False False 2605.05464 The Origin of Life in the Light of Evolution 2026-05-06 q-bio.PE q-bio.PE https://arxiv.org/abs/2605.05464 False False 2605.05284 Direct From Darwin: Deriving Advanced Optimizers From Evolutionary First Principles 2026-05-06 cs.LG;cs.NE;q-bio.PE;q-bio.QM q-bio.PE https://arxiv.org/abs/2605.05284 False False 2605.05464 The Emergence of Life in the Light of Evolution 2026-05-06 q-bio.PE q-bio.PE https://arxiv.org/abs/2605.05464 False False 2605.05464 The Emergence of Life in the Light of Evolution 2026-05-06 q-bio.PE q-bio.PE https://arxiv.org/abs/2605.05464 False False 2605.03281 Donor-Aware scRNA-seq Benchmarks for IBD Classification 2026-05-05 cs.LG;q-bio.QM;stat.ML q-bio.QM https://arxiv.org/abs/2605.03281 False False 2605.03360 A-CODE: Fully Atomic Protein Co-Design with Unified Multimodal Diffusion 2026-05-05 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.03360 False False 2605.03498 Connecting IBD tracts and runs of homozygosity: A coalescent framework for inferring effective population size 2026-05-05 q-bio.PE q-bio.PE https://arxiv.org/abs/2605.03498 False False 2605.03578 Expanding functional protein sequence space using high entropy generative models 2026-05-05 cs.LG;physics.stat-mech;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.03578 False False 2605.03606 Cusped singularities organize mixed-mode oscillations in mutually inhibitory slow-fast systems 2026-05-05 math.DS;q-bio.NC;q-bio.QM q-bio.NC https://arxiv.org/abs/2605.03606 False False 2605.03632 Robust chemotaxis beyond sensing limits: signal, noise, and strategy 2026-05-05 q-bio.CB;q-bio.SC q-bio.CB https://arxiv.org/abs/2605.03632 False False 2605.03690 Graph Neural Network based Hierarchy-Aware Embeddings of Knowledge Graphs: Applications to Yeast Phenotype Prediction 2026-05-05 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.03690 False False 2605.03707 AgenticPosesRanker: An Agentic AI Framework for Physically Grounded Ranking of Protein-Ligand Docking Poses 2026-05-05 q-bio.BM q-bio.BM https://arxiv.org/abs/2605.03707 False False 2605.03827 Inferring Phylogenetic Networks from Allowed and Forbidden LCA-Constraints 2026-05-05 cs.DM;q-bio.PE q-bio.PE https://arxiv.org/abs/2605.03827 False False 2605.04048 Catastrophe-dispersion models in random and varying environments across generations 2026-05-05 math.PR;q-bio.PE q-bio.PE https://arxiv.org/abs/2605.04048 False False 2605.03281 Donor-Aware scRNA-seq Benchmarks for IBD Classification 2026-05-05 cs.LG;q-bio.QM;stat.ML q-bio.QM https://arxiv.org/abs/2605.03281 False False 2605.03360 A-CODE: Fully Atomic Protein Co-Design with Unified Multimodal Diffusion 2026-05-05 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.03360 False False 2605.03498 Connecting IBD tracts and runs of homozygosity: A coalescent framework for inferring effective population size 2026-05-05 q-bio.PE q-bio.PE https://arxiv.org/abs/2605.03498 False False 2605.03578 Expanding functional protein sequence space using high entropy generative models 2026-05-05 cs.LG;physics.stat-mech;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.03578 False False 2605.03606 Cusped singularities organize mixed-mode oscillations in mutually inhibitory slow-fast systems 2026-05-05 math.DS;q-bio.NC;q-bio.QM q-bio.NC https://arxiv.org/abs/2605.03606 False False 2605.03632 Robust chemotaxis beyond sensing limits: signal, noise, and strategy 2026-05-05 q-bio.CB;q-bio.SC q-bio.CB https://arxiv.org/abs/2605.03632 False False 2605.03690 Graph Neural Network based Hierarchy-Aware Embeddings of Knowledge Graphs: Applications to Yeast Phenotype Prediction 2026-05-05 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.03690 False False 2605.03707 AgenticPosesRanker: An Agentic AI Framework for Physically Grounded Ranking of Protein-Ligand Docking Poses 2026-05-05 q-bio.BM q-bio.BM https://arxiv.org/abs/2605.03707 False False 2605.03827 Inferring Phylogenetic Networks from Allowed and Forbidden LCA-Constraints 2026-05-05 cs.DM;q-bio.PE q-bio.PE https://arxiv.org/abs/2605.03827 False False 2605.04115 Learning reveals invisible structure in low-rank RNNs 2026-05-05 cs.AI;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.04115 False False 2605.04117 From Individual-Based Models to Macroscopic Dynamics of Antimicrobial Resistance 2026-05-05 q-bio.PE q-bio.PE https://arxiv.org/abs/2605.04117 False False 2605.04118 ProtDBench: A Unified Benchmark of Protein Binder Design and Evaluation 2026-05-05 cs.AI;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.04118 False False 2605.04119 Tree-Conditioned Edit Flows for Ancestral Sequence Reconstruction 2026-05-05 cs.LG;q-bio.PE;q-bio.QM q-bio.PE https://arxiv.org/abs/2605.04119 False False 2605.04200 Neural Manifolds as Crystallized Embeddings: A Synthesis of the Free Energy Principle, Generalized Synchronization, and Hebbian Plasticity 2026-05-05 q-bio.NC q-bio.NC https://arxiv.org/abs/2605.04200 False False 2605.04265 Benchmarking open-source tools for in silico antiviral drug discovery 2026-05-05 q-bio.BM;q-bio.QM q-bio.BM https://arxiv.org/abs/2605.04265 False False 2605.04326 A foundation model of vision, audition, and language for in-silico neuroscience 2026-05-05 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.04326 False False 2605.04339 Genotype specificity and spatial arrangement govern the direction and magnitude of selection in variable environments 2026-05-05 physics.bio-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2605.04339 False False 2605.04048 Catastrophe-dispersion models in random and varying environments across generations 2026-05-05 math.PR;q-bio.PE q-bio.PE https://arxiv.org/abs/2605.04048 False False 2605.04115 Learning reveals invisible structure in low-rank RNNs 2026-05-05 cs.AI;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.04115 False False 2605.04117 From Individual-Based Models to Macroscopic Dynamics of Antimicrobial Resistance 2026-05-05 q-bio.PE q-bio.PE https://arxiv.org/abs/2605.04117 False False 2605.04118 ProtDBench: A Unified Benchmark of Protein Binder Design and Evaluation 2026-05-05 cs.AI;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.04118 False False 2605.04119 Tree-Conditioned Edit Flows for Ancestral Sequence Reconstruction 2026-05-05 cs.LG;q-bio.PE;q-bio.QM q-bio.PE https://arxiv.org/abs/2605.04119 False False 2605.04200 Neural Manifolds as Crystallized Embeddings: A Synthesis of the Free Energy Principle, Generalized Synchronization, and Hebbian Plasticity 2026-05-05 q-bio.NC q-bio.NC https://arxiv.org/abs/2605.04200 False False 2605.04265 Benchmarking open-source tools for in silico antiviral drug discovery 2026-05-05 q-bio.BM;q-bio.QM q-bio.BM https://arxiv.org/abs/2605.04265 False False 2605.04326 A foundation model of vision, audition, and language for in-silico neuroscience 2026-05-05 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.04326 False False 2605.04339 Genotype specificity and spatial arrangement govern the direction and magnitude of selection in variable environments 2026-05-05 physics.bio-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2605.04339 False False 2605.04048 Catastrophe-dispersion models in random and varying environments across generations 2026-05-05 math.PR;q-bio.PE q-bio.PE https://arxiv.org/abs/2605.04048 False False 2605.05254 Modularity Emerges from Action-Functional Constraints in Marine Metabolic Networks: A Biology-Scale Validation of the Network-Weighted Action Principle 2026-05-05 q-bio.MN;q-bio.QM q-bio.MN https://arxiv.org/abs/2605.05254 False False 2605.05254 Modularity Emerges from Action-Functional Constraints in Marine Metabolic Networks: A Biology-Scale Validation of the Network-Weighted Action Principle 2026-05-05 q-bio.MN;q-bio.QM q-bio.MN https://arxiv.org/abs/2605.05254 False False 2605.03827 Inferring Phylogenetic Networks from Required and Forbidden LCA-Constraints 2026-05-05 cs.DM;q-bio.PE q-bio.PE https://arxiv.org/abs/2605.03827 False False 2605.03827 Inferring Phylogenetic Networks from Required and Forbidden LCA-Constraints 2026-05-05 cs.DM;q-bio.PE q-bio.PE https://arxiv.org/abs/2605.03827 False False 2605.16326 A Machine Learning Framework for EEG-Based Prediction of Treatment Efficacy in Chronic Neck Pain 2026-05-05 cs.AI;cs.LG;eess.SP;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.16326 False False 2605.16331 Retrieval and competition: how a protein foundation model starts a protein 2026-05-05 cs.AI;q-bio.BM q-bio.BM https://arxiv.org/abs/2605.16331 False False 2605.16326 A Machine Learning Framework for EEG-Based Prediction of Treatment Efficacy in Chronic Neck Pain 2026-05-05 cs.AI;cs.LG;eess.SP;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.16326 False False 2605.16331 Retrieval and competition: how a protein foundation model starts a protein 2026-05-05 cs.AI;q-bio.BM q-bio.BM https://arxiv.org/abs/2605.16331 False False 2605.03690 Graph Neural Network based Hierarchy-Aware Embeddings of Knowledge Graphs: Applications to Yeast Phenotype Prediction 2026-05-05 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.03690 False False 2605.03690 Graph Neural Network based Hierarchy-Aware Embeddings of Knowledge Graphs: Applications to Yeast Phenotype Prediction 2026-05-05 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.03690 False False 2605.04118 ProtDBench: A Unified Benchmark of Protein Binder Design and Evaluation 2026-05-05 cs.AI;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.04118 False False 2605.04118 ProtDBench: A Unified Benchmark of Protein Binder Design and Evaluation 2026-05-05 cs.AI;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.04118 False False 2605.04200 Neural Manifolds as Crystallized Embeddings: A Synthesis of the Free Energy Principle, Generalized Synchronization, and Hebbian Plasticity 2026-05-05 q-bio.NC q-bio.NC https://arxiv.org/abs/2605.04200 False False 2605.04200 Neural Manifolds as Crystallized Embeddings: A Synthesis of the Free Energy Principle, Generalized Synchronization, and Hebbian Plasticity 2026-05-05 q-bio.NC q-bio.NC https://arxiv.org/abs/2605.04200 False False 2605.16331 Retrieval and competition: how a protein foundation model starts a protein 2026-05-05 cs.AI;q-bio.BM q-bio.BM https://arxiv.org/abs/2605.16331 False False 2605.16331 Retrieval and competition: how a protein foundation model starts a protein 2026-05-05 cs.AI;q-bio.BM q-bio.BM https://arxiv.org/abs/2605.16331 False False 2606.05189 Bio-plausible Neuromorphic Disturbance Observer Based on Emulation Theory: Extended Version 2026-05-05 cs.NE;q-bio.NC q-bio.NC https://arxiv.org/abs/2606.05189 False False 2606.05189 Bio-plausible Neuromorphic Disturbance Observer Based on Emulation Theory: Extended Version 2026-05-05 cs.NE;q-bio.NC q-bio.NC https://arxiv.org/abs/2606.05189 False False 2606.05189 Bio-plausible Neuromorphic Disturbance Observer Based on Emulation Theory: Extended Version 2026-05-05 cs.NE;q-bio.NC q-bio.NC https://arxiv.org/abs/2606.05189 False False 2606.05189 Bio-plausible Neuromorphic Disturbance Observer Based on Emulation Theory: Extended Version 2026-05-05 cs.NE;q-bio.NC q-bio.NC https://arxiv.org/abs/2606.05189 False False 2605.03498 From IBD tracts to runs of homozygosity: a unified coalescent framework including selection 2026-05-05 q-bio.PE q-bio.PE https://arxiv.org/abs/2605.03498 False False 2605.03498 From IBD tracts to runs of homozygosity: a unified coalescent framework including selection 2026-05-05 q-bio.PE q-bio.PE https://arxiv.org/abs/2605.03498 False False 2605.03827 Inferring Phylogenetic Networks from Required and Forbidden LCA-Constraints 2026-05-05 cs.DM;q-bio.PE q-bio.PE https://arxiv.org/abs/2605.03827 False False 2605.03827 Inferring Phylogenetic Networks from Required and Forbidden LCA-Constraints 2026-05-05 cs.DM;q-bio.PE q-bio.PE https://arxiv.org/abs/2605.03827 False False 2605.02142 ORBIT: Learning Gene Program Co-Activation Structure for Cell-Type-Stratified Pathway Rewiring Analysis in Single-Cell Transcriptomics 2026-05-04 q-bio.GN q-bio.GN https://arxiv.org/abs/2605.02142 False False 2605.02248 Statistics of a multi-factor function from its Fourier transform 2026-05-04 cs.DM;eess.SP;math.ST;q-bio.GN;q-fin.ST;stat.TH q-bio.GN https://arxiv.org/abs/2605.02248 False False 2605.02365 Modeling sequential cognitive states via population level cortical dynamics 2026-05-04 math.DS;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.02365 False False 2605.02499 Genealogical structures under interactive neutral reproduction: factorial moment duality via a Frankenstein process 2026-05-04 math.PR;q-bio.PE q-bio.PE https://arxiv.org/abs/2605.02499 False False 2605.02675 Online Generalised Predictive Coding 2026-05-04 cs.LG;q-bio.NC;stat.ML q-bio.NC https://arxiv.org/abs/2605.02675 False False 2605.02745 Bolek: A Multimodal Language Model for Molecular Reasoning 2026-05-04 cs.AI;cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2605.02745 False False 2605.02852 Inferring Active Neural Circuits Using Diffusion Scores 2026-05-04 q-bio.NC q-bio.NC https://arxiv.org/abs/2605.02852 False False 2605.02142 ORBIT: Learning Gene Program Co-Activation Structure for Cell-Type-Stratified Pathway Rewiring Analysis in Single-Cell Transcriptomics 2026-05-04 q-bio.GN q-bio.GN https://arxiv.org/abs/2605.02142 False False 2605.02365 Modeling sequential cognitive states via population level cortical dynamics 2026-05-04 math.DS;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.02365 False False 2605.02248 Statistics of a multi-factor function from its Fourier transform 2026-05-04 cs.DM;eess.SP;math.ST;q-bio.GN;q-fin.ST;stat.TH q-bio.GN https://arxiv.org/abs/2605.02248 False False 2605.02499 Genealogical structures under interactive neutral reproduction: factorial moment duality via a Frankenstein process 2026-05-04 math.PR;q-bio.PE q-bio.PE https://arxiv.org/abs/2605.02499 False False 2605.02675 Online Generalised Predictive Coding 2026-05-04 cs.LG;q-bio.NC;stat.ML q-bio.NC https://arxiv.org/abs/2605.02675 False False 2605.02745 Bolek: A Multimodal Language Model for Molecular Reasoning 2026-05-04 cs.AI;cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2605.02745 False False 2605.02852 Inferring Active Neural Circuits Using Diffusion Scores 2026-05-04 q-bio.NC q-bio.NC https://arxiv.org/abs/2605.02852 False False 2605.03046 Epistatic strength, modularity, and locus heterogeneity shape the number of local optima in fitness landscapes 2026-05-04 physics.dis-nn;q-bio.PE q-bio.PE https://arxiv.org/abs/2605.03046 False False 2605.03053 Approaching human parity in the quality of automated organoid image segmentation 2026-05-04 cs.CV;physics.soft;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.03053 False False 2605.03061 Dynamic Vine Copulas: Detecting and Quantifying Time-Varying Higher-Order Interactions 2026-05-04 cs.LG;q-bio.QM;stat.ME;stat.ML q-bio.QM https://arxiv.org/abs/2605.03061 False False 2605.03146 A temperature-driven diffusion model of Usutu virus spread in Germany with spillover into neighbouring countries 2026-05-04 q-bio.PE q-bio.PE https://arxiv.org/abs/2605.03146 False False 2605.03169 NeuralSet: A High-Performing Python Package for Neuro-AI 2026-05-04 q-bio.NC q-bio.NC https://arxiv.org/abs/2605.03169 False False 2605.03219 The Incommensurability Principle in Biological Transport 2026-05-04 physics.bio-ph;q-bio.TO q-bio.TO https://arxiv.org/abs/2605.03219 False False 2605.03046 Epistatic strength, modularity, and locus heterogeneity shape the number of local optima in fitness landscapes 2026-05-04 physics.dis-nn;q-bio.PE q-bio.PE https://arxiv.org/abs/2605.03046 False False 2605.03053 Approaching human parity in the quality of automated organoid image segmentation 2026-05-04 cs.CV;physics.soft;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.03053 False False 2605.03061 Dynamic Vine Copulas: Detecting and Quantifying Time-Varying Higher-Order Interactions 2026-05-04 cs.LG;q-bio.QM;stat.ME;stat.ML q-bio.QM https://arxiv.org/abs/2605.03061 False False 2605.03146 A temperature-driven diffusion model of Usutu virus spread in Germany with spillover into neighbouring countries 2026-05-04 q-bio.PE q-bio.PE https://arxiv.org/abs/2605.03146 False False 2605.03169 NeuralSet: A High-Performing Python Package for Neuro-AI 2026-05-04 q-bio.NC q-bio.NC https://arxiv.org/abs/2605.03169 False False 2605.03219 The Incommensurability Principle in Biological Transport 2026-05-04 physics.bio-ph;q-bio.TO q-bio.TO https://arxiv.org/abs/2605.03219 False False 2605.02248 Statistics of a multi-factor function from its Fourier transform 2026-05-04 cs.DM;eess.SP;math.ST;q-bio.GN;q-fin.ST;stat.TH q-bio.GN https://arxiv.org/abs/2605.02248 False False 2605.03061 Dynamic Vine Copulas: Detecting and Quantifying Time-Varying Higher-Order Interactions 2026-05-04 cs.LG;q-bio.QM;stat.ME;stat.ML q-bio.QM https://arxiv.org/abs/2605.03061 False False 2605.03061 Dynamic Vine Copulas: Detecting and Quantifying Time-Varying Higher-Order Interactions 2026-05-04 cs.LG;q-bio.QM;stat.ME;stat.ML q-bio.QM https://arxiv.org/abs/2605.03061 False False 2605.02248 Statistics of a multi-factor function from its Fourier transform 2026-05-04 cs.DM;eess.SP;math.ST;q-bio.GN;q-fin.ST;stat.TH q-bio.GN https://arxiv.org/abs/2605.02248 False False 2605.03169 NeuralSet: A High-Performing Python Package for Neuro-AI 2026-05-04 q-bio.NC q-bio.NC https://arxiv.org/abs/2605.03169 False False 2605.03169 NeuralSet: A High-Performing Python Package for Neuro-AI 2026-05-04 q-bio.NC q-bio.NC https://arxiv.org/abs/2605.03169 False False 2605.13870 A method for including socio-demographic factors in social contact matrices for compartment-based epidemic models 2026-05-04 physics.soc-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2605.13870 False False 2605.13870 A method for including socio-demographic factors in social contact matrices for compartment-based epidemic models 2026-05-04 physics.soc-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2605.13870 False False 2605.02248 Statistics of a multi-factor function from its Fourier transform 2026-05-04 cs.DM;eess.SP;math.ST;q-bio.GN;q-fin.ST;stat.TH q-bio.GN https://arxiv.org/abs/2605.02248 False False 2605.03219 The Incommensurability Principle in Biological Transport 2026-05-04 physics.bio-ph;q-bio.TO q-bio.TO https://arxiv.org/abs/2605.03219 False False 2605.03219 The Incommensurability Principle in Biological Transport 2026-05-04 physics.bio-ph;q-bio.TO q-bio.TO https://arxiv.org/abs/2605.03219 False False 2605.01656 From Cortical Synchronous Rhythm to Brain Inspired Learning Mechanism: An Oscillatory Spiking Neural Network with Time-Delayed Coordination 2026-05-03 cs.AI;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.01656 False False 2605.01680 Computational foundations of the human world 2026-05-03 cs.SI;cs.SY;eess.SY;q-bio.PE q-bio.PE https://arxiv.org/abs/2605.01680 False False 2605.01681 Benchmarking Single-Pose Docking, Consensus Rescoring, and Supervised ML on the LIT-PCBA Library: A Critical Evaluation of DiffDock, AutoDock-GPU, GNINA, and DiffDock-NMDN 2026-05-03 cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2605.01681 False False 2605.01767 Electroencephalography and Electromyography as a Non-Invasive Biomarker of Neural Regeneration: A Review of Central and Peripheral Nervous System Injury and Regeneration 2026-05-03 eess.SP;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.01767 False False 2605.01770 Emergent population dynamics of random walkers with cooperative reproduction and spatial selection 2026-05-03 math.PR;physics.PS;physics.stat-mech;q-bio.PE q-bio.PE https://arxiv.org/abs/2605.01770 False False 2605.01819 Longitudinal QSM: Enhancing consistency of multiple time point susceptibility maps via simultaneous reconstruction 2026-05-03 q-bio.QM q-bio.QM https://arxiv.org/abs/2605.01819 False False 2605.01656 From Cortical Synchronous Rhythm to Brain Inspired Learning Mechanism: An Oscillatory Spiking Neural Network with Time-Delayed Coordination 2026-05-03 cs.AI;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.01656 False False 2605.01680 Computational foundations of the human world 2026-05-03 cs.SI;cs.SY;eess.SY;q-bio.PE q-bio.PE https://arxiv.org/abs/2605.01680 False False 2605.01767 Electroencephalography and Electromyography as a Non-Invasive Biomarker of Neural Regeneration: A Review of Central and Peripheral Nervous System Injury and Regeneration 2026-05-03 eess.SP;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.01767 False False 2605.01770 Emergent population dynamics of random walkers with cooperative reproduction and spatial selection 2026-05-03 math.PR;physics.PS;physics.stat-mech;q-bio.PE q-bio.PE https://arxiv.org/abs/2605.01770 False False 2605.01819 Longitudinal QSM: Enhancing consistency of multiple time point susceptibility maps via simultaneous reconstruction 2026-05-03 q-bio.QM q-bio.QM https://arxiv.org/abs/2605.01819 False False 2605.02972 Non-Monotone Response Modules and Cascades from the EML Operator for Reduced Models of Biological Dynamics 2026-05-03 math.DS;physics.bio-ph;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.02972 False False 2605.01681 Benchmarking Single-Pose Docking, Consensus Rescoring, and Supervised ML on the LIT-PCBA Library: A Critical Evaluation of DiffDock, AutoDock-GPU, GNINA, and DiffDock-NMDN 2026-05-03 cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2605.01681 False False 2605.01681 Benchmarking Single-Pose Docking, Consensus Rescoring, and Supervised ML on the LIT-PCBA Library: A Critical Evaluation of DiffDock, AutoDock-GPU, GNINA, and DiffDock-NMDN 2026-05-03 cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2605.01681 False False 2605.02972 Non-Monotone Response Modules and Cascades from the EML Operator for Reduced Models of Biological Dynamics 2026-05-03 math.DS;physics.bio-ph;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.02972 False False 2605.12536 Information as Maximum-Caliber Deviation: A bridge between Integrated Information Theory and the Free Energy Principle 2026-05-03 cs.AI;cs.IT;math.IT;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.12536 False False 2605.12536 Information as Maximum-Caliber Deviation: A bridge between Integrated Information Theory and the Free Energy Principle 2026-05-03 cs.AI;cs.IT;math.IT;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.12536 False False 2605.01770 Emergent population dynamics of random walkers with cooperative reproduction and spatial selection 2026-05-03 math.PR;physics.PS;physics.stat-mech;q-bio.PE q-bio.PE https://arxiv.org/abs/2605.01770 False False 2605.01770 Emergent population dynamics of random walkers with cooperative reproduction and spatial selection 2026-05-03 math.PR;physics.PS;physics.stat-mech;q-bio.PE q-bio.PE https://arxiv.org/abs/2605.01770 False False 2605.01770 Emergent population dynamics of random walkers with cooperative reproduction and spatial selection 2026-05-03 math.PR;physics.PS;physics.stat-mech;q-bio.PE q-bio.PE https://arxiv.org/abs/2605.01770 False False 2605.01770 Emergent population dynamics of random walkers with cooperative reproduction and spatial selection 2026-05-03 math.PR;physics.PS;physics.stat-mech;q-bio.PE q-bio.PE https://arxiv.org/abs/2605.01770 False False 2605.01770 Emergent population dynamics of random walkers with cooperative reproduction and spatial selection 2026-05-03 math.PR;physics.PS;physics.stat-mech;q-bio.PE q-bio.PE https://arxiv.org/abs/2605.01770 False False 2605.01770 Emergent population dynamics of random walkers with cooperative reproduction and spatial selection 2026-05-03 math.PR;physics.PS;physics.stat-mech;q-bio.PE q-bio.PE https://arxiv.org/abs/2605.01770 False False 2605.01290 How Light Reshapes the Mind. An Active Inference Framework for the Cognitive and Emotional Effects of Indoor Lighting 2026-05-02 q-bio.QM q-bio.QM https://arxiv.org/abs/2605.01290 False False 2605.01378 PhenotypeToGeneDownloaderR: automated multi-source retrieval and validation of phenotype-associated genes 2026-05-02 q-bio.GN q-bio.GN https://arxiv.org/abs/2605.01378 False False 2605.01430 Measuring Understanding Through Discrete Compositional Knowledge Structures in Hierarchical Automata 2026-05-02 q-bio.NC q-bio.NC https://arxiv.org/abs/2605.01430 False False 2605.01472 Label-Free Microrefractometry of Interfacial Processes Using Fluorescent Smart Coverslips 2026-05-02 physics.optics;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.01472 False False 2605.01290 How Light Reshapes the Mind. An Active Inference Framework for the Cognitive and Emotional Effects of Indoor Lighting 2026-05-02 q-bio.QM q-bio.QM https://arxiv.org/abs/2605.01290 False False 2605.01378 PhenotypeToGeneDownloaderR: automated multi-source retrieval and validation of phenotype-associated genes 2026-05-02 q-bio.GN q-bio.GN https://arxiv.org/abs/2605.01378 False False 2605.01430 Measuring Understanding Through Discrete Compositional Knowledge Structures in Hierarchical Automata 2026-05-02 q-bio.NC q-bio.NC https://arxiv.org/abs/2605.01430 False False 2605.01472 Label-Free Microrefractometry of Interfacial Processes Using Fluorescent Smart Coverslips 2026-05-02 physics.optics;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.01472 False False 2605.02954 EFGPP: Exploratory framework for genotype-phenotype prediction 2026-05-02 cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2605.02954 False False 2605.02956 Equilibrium and Competition in Evolutionary Dynamics 2026-05-02 q-bio.PE q-bio.PE https://arxiv.org/abs/2605.02956 False False 2605.02954 EFGPP: Exploratory framework for genotype-phenotype prediction 2026-05-02 cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2605.02954 False False 2605.02956 Equilibrium and Competition in Evolutionary Dynamics 2026-05-02 q-bio.PE q-bio.PE https://arxiv.org/abs/2605.02956 False False 2605.06692 Breakdown of Adiabatic Scaling and Noise-Induced Functional Synchronization in Deeply Quiescent Excitable Systems 2026-05-02 math.PR;physics.CD;physics.bio-ph;physics.stat-mech;q-bio.MN q-bio.MN https://arxiv.org/abs/2605.06692 False False 2605.06692 Breakdown of Adiabatic Scaling and Noise-Induced Functional Synchronization in Deeply Quiescent Excitable Systems 2026-05-02 math.PR;physics.CD;physics.bio-ph;physics.stat-mech;q-bio.MN q-bio.MN https://arxiv.org/abs/2605.06692 False False 2605.12534 BioSEN: A Bio-acoustic Signal Enhancement Network for Animal Vocalizations 2026-05-02 cs.LG;cs.SD;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.12534 False False 2605.06692 Breakdown of Adiabatic Scaling and Noise-Induced Functional Synchronization in Deeply Quiescent Excitable Systems 2026-05-02 math.PR;physics.CD;physics.bio-ph;physics.stat-mech;q-bio.MN q-bio.MN https://arxiv.org/abs/2605.06692 False False 2605.06692 Breakdown of Adiabatic Scaling and Noise-Induced Functional Synchronization in Deeply Quiescent Excitable Systems 2026-05-02 math.PR;physics.CD;physics.bio-ph;physics.stat-mech;q-bio.MN q-bio.MN https://arxiv.org/abs/2605.06692 False False 2605.12534 BioSEN: A Bio-acoustic Signal Enhancement Network for Animal Vocalizations 2026-05-02 cs.LG;cs.SD;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.12534 False False 2605.12534 BioSEN: A Bio-acoustic Signal Enhancement Network for Animal Vocalizations 2026-05-02 cs.LG;cs.SD;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.12534 False False 2605.01430 Measuring Understanding Through Discrete Compositional Knowledge Structures in Hierarchical Automata 2026-05-02 q-bio.NC q-bio.NC https://arxiv.org/abs/2605.01430 False False 2605.01430 Measuring Understanding Through Discrete Compositional Knowledge Structures in Hierarchical Automata 2026-05-02 q-bio.NC q-bio.NC https://arxiv.org/abs/2605.01430 False False 2605.06692 Breakdown of Adiabatic Scaling and Noise-Induced Functional Synchronization in Deeply Quiescent Excitable Systems 2026-05-02 math.PR;physics.CD;physics.bio-ph;physics.stat-mech;q-bio.MN q-bio.MN https://arxiv.org/abs/2605.06692 False False 2605.12534 BioSEN: A Bio-acoustic Signal Enhancement Network for Animal Vocalizations 2026-05-02 cs.LG;cs.SD;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.12534 False False 2605.12534 BioSEN: A Bio-acoustic Signal Enhancement Network for Animal Vocalizations 2026-05-02 cs.LG;cs.SD;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.12534 False False 2605.00401 SIMON: Saliency-aware Integrative Multi-view Object-centric Neural Decoding 2026-05-01 cs.CV;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.00401 False False 2605.00465 Intrinsic Brain Networks Underlying the Experience and Expression of Subclinical Anxiety 2026-05-01 q-bio.NC q-bio.NC https://arxiv.org/abs/2605.00465 False False 2605.00479 Reduced-Precision Stochastic Simulation for Mathematical Biology 2026-05-01 q-bio.QM q-bio.QM https://arxiv.org/abs/2605.00479 False False 2605.00545 Beyond Continuity: Simulation-free Reconstruction of Discrete Branching Dynamics from Single-cell Snapshots 2026-05-01 cs.AI;cs.LG;math.MP;physics.math-ph;q-bio.GN;q-bio.QM q-bio.GN https://arxiv.org/abs/2605.00545 0.715 0.79 True 8 8.0 True 2605.00730 Reconstruction of glymphatic transport fields from subject-specific imaging data, with particular emphasis on cerebrospinal fluid flow and tracer conservation 2026-05-01 cs.CE;physics.comp-ph;physics.med-ph;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.00730 False False 2605.00746 Functional Connectivity-Guided Band Selection for Motor Imagery Brain-Computer Interfaces 2026-05-01 eess.SP;physics.optics;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.00746 False False 2605.00778 Observable Performance Does Not Fully Reflect System Organization: A Multi-Level Analysis of Gait Dynamics Under Occlusal Constraint 2026-05-01 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.00778 False False 2605.00401 SIMON: Saliency-aware Integrative Multi-view Object-centric Neural Decoding 2026-05-01 cs.CV;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.00401 False False 2605.00465 Intrinsic Brain Networks Underlying the Experience and Expression of Subclinical Anxiety 2026-05-01 q-bio.NC q-bio.NC https://arxiv.org/abs/2605.00465 False False 2605.00479 Reduced-Precision Stochastic Simulation for Mathematical Biology 2026-05-01 q-bio.QM q-bio.QM https://arxiv.org/abs/2605.00479 False False 2605.00545 Beyond Continuity: Simulation-free Reconstruction of Discrete Branching Dynamics from Single-cell Snapshots 2026-05-01 cs.AI;cs.LG;math.MP;physics.math-ph;q-bio.GN;q-bio.QM q-bio.GN https://arxiv.org/abs/2605.00545 0.715 0.79 True 8 8.0 True 2605.00730 Reconstruction of glymphatic transport fields from subject-specific imaging data, with particular emphasis on cerebrospinal fluid flow and tracer conservation 2026-05-01 cs.CE;physics.comp-ph;physics.med-ph;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.00730 False False 2605.00746 Functional Connectivity-Guided Band Selection for Motor Imagery Brain-Computer Interfaces 2026-05-01 eess.SP;physics.optics;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.00746 False False 2605.00778 Observable Performance Does Not Fully Reflect System Organization: A Multi-Level Analysis of Gait Dynamics Under Occlusal Constraint 2026-05-01 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.00778 False False 2605.00948 Co-Generative De Novo Functional Protein Design 2026-05-01 cs.AI;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.00948 False False 2605.00966 Robust volatility updates for Hierarchical Gaussian Filtering 2026-05-01 cs.LG;cs.NE;q-bio.NC;stat.ML q-bio.NC https://arxiv.org/abs/2605.00966 False False 2605.01056 Logistic Gene Regulatory Networks: Prevention of Expression Shutdown, and Numerical Stability Beyond Hill Function 2026-05-01 math.DS;q-bio.MN q-bio.MN https://arxiv.org/abs/2605.01056 False False 2605.01083 Modelling the electrophysiological interactions between human pluripotent cell-derived cardiomyocite grafts and host ventricular tissue 2026-05-01 cs.NA;math.NA;q-bio.TO q-bio.TO https://arxiv.org/abs/2605.01083 False False 2605.01109 Heat-tree: Cross-platform software for interactive and embeddable phylogenetic tree visualization and editing 2026-05-01 q-bio.PE q-bio.PE https://arxiv.org/abs/2605.01109 False False 2605.00948 Co-Generative De Novo Functional Protein Design 2026-05-01 cs.AI;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.00948 False False 2605.00966 Robust volatility updates for Hierarchical Gaussian Filtering 2026-05-01 cs.LG;cs.NE;q-bio.NC;stat.ML q-bio.NC https://arxiv.org/abs/2605.00966 False False 2605.01056 Logistic Gene Regulatory Networks: Prevention of Expression Shutdown, and Numerical Stability Beyond Hill Function 2026-05-01 math.DS;q-bio.MN q-bio.MN https://arxiv.org/abs/2605.01056 False False 2605.01083 Modelling the electrophysiological interactions between human pluripotent cell-derived cardiomyocite grafts and host ventricular tissue 2026-05-01 cs.NA;math.NA;q-bio.TO q-bio.TO https://arxiv.org/abs/2605.01083 False False 2605.01109 Heat-tree: Cross-platform software for interactive and embeddable phylogenetic tree visualization and editing 2026-05-01 q-bio.PE q-bio.PE https://arxiv.org/abs/2605.01109 False False 2605.02936 A Universal Space of Brain Dynamics for Unveiling Cognitive Transitions and Individual Differences 2026-05-01 cs.AI;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.02936 False False 2605.02936 A Universal Space of Brain Dynamics for Unveiling Cognitive Transitions and Individual Differences 2026-05-01 cs.AI;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.02936 False False 2605.01109 Heat-tree: Cross-platform software for interactive and embeddable phylogenetic tree visualization and editing 2026-05-01 q-bio.PE q-bio.PE https://arxiv.org/abs/2605.01109 False False 2605.01109 Heat-tree: Cross-platform software for interactive and embeddable phylogenetic tree visualization and editing 2026-05-01 q-bio.PE q-bio.PE https://arxiv.org/abs/2605.01109 False False 2605.00465 Intrinsic Brain Networks Underlying the Experience and Expression of Subclinical Anxiety 2026-05-01 q-bio.NC q-bio.NC https://arxiv.org/abs/2605.00465 False False 2605.00465 Intrinsic Brain Networks Underlying the Experience and Expression of Subclinical Anxiety 2026-05-01 q-bio.NC q-bio.NC https://arxiv.org/abs/2605.00465 False False 2605.00545 Beyond Continuity: Simulation-free Reconstruction of Discrete Branching Dynamics from Single-cell Snapshots 2026-05-01 cs.AI;cs.LG;math.MP;physics.math-ph;q-bio.GN;q-bio.QM q-bio.GN https://arxiv.org/abs/2605.00545 0.715 0.79 True 8 8.0 True 2605.01056 Numerical Reliability of Logistic Gene Regulatory Network Models: Preventing Expression Shutdown and Robust Integration of Boolean-Derived ODE Systems 2026-05-01 math.DS;q-bio.MN q-bio.MN https://arxiv.org/abs/2605.01056 False False 2605.01056 Numerical Reliability of Logistic Gene Regulatory Network Models: Preventing Expression Shutdown and Robust Integration of Boolean-Derived ODE Systems 2026-05-01 math.DS;q-bio.MN q-bio.MN https://arxiv.org/abs/2605.01056 False False 2605.00778 Observable Performance Does Not Fully Reflect Adaptive System Organization: A Multi-Level Analysis of Gait Dynamics Under Occlusal Constraint 2026-05-01 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.00778 False False 2605.00778 Observable Performance Does Not Fully Reflect Adaptive System Organization: A Multi-Level Analysis of Gait Dynamics Under Occlusal Constraint 2026-05-01 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.00778 False False 2604.27312 Epidemic Extinction in a Continuous SIRS Model with Vaccination 2026-04-30 physics.soc-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2604.27312 0.8349 0.793 True 5 4.25 False 2604.27520 Incorporating the underuse problem in the tragedy of the commons 2026-04-30 q-bio.PE q-bio.PE https://arxiv.org/abs/2604.27520 False False 2604.27583 Simulating Infant First-Person Sensorimotor Experience via Motion Retargeting from Babies to Humanoids 2026-04-30 cs.RO;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.27583 False False 2604.27646 Benchmarking virtual cell models for in-the-wild perturbation response 2026-04-30 q-bio.CB q-bio.CB https://arxiv.org/abs/2604.27646 False False 2604.27726 Universal Nano-Bead Emitter Inks for Programmable Nanometric Fluorescent Architectures 2026-04-30 physics.optics;q-bio.QM q-bio.QM https://arxiv.org/abs/2604.27726 False False 2604.27894 On Agentic Behavioral Modeling 2026-04-30 q-bio.NC q-bio.NC https://arxiv.org/abs/2604.27894 False False 2604.27913 Complex Effects of Salt on Small-Angle X-ray Scattering of BSA Originate From the Interplay of Ions and Hydration Water 2026-04-30 physics.soft;q-bio.BM q-bio.BM https://arxiv.org/abs/2604.27913 False False 2604.28007 Multisensory learning recruits visual neurons into an olfactory memory engram 2026-04-30 q-bio.NC q-bio.NC https://arxiv.org/abs/2604.28007 False False 2604.27312 Epidemic Extinction in a Continuous SIRS Model with Vaccination 2026-04-30 physics.soc-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2604.27312 0.8349 0.793 True 5 4.25 False 2604.27520 Incorporating the underuse problem in the tragedy of the commons 2026-04-30 q-bio.PE q-bio.PE https://arxiv.org/abs/2604.27520 False False 2604.27583 Simulating Infant First-Person Sensorimotor Experience via Motion Retargeting from Babies to Humanoids 2026-04-30 cs.RO;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.27583 False False 2604.27646 Benchmarking virtual cell models for in-the-wild perturbation response 2026-04-30 q-bio.CB q-bio.CB https://arxiv.org/abs/2604.27646 False False 2604.27726 Universal Nano-Bead Emitter Inks for Programmable Nanometric Fluorescent Architectures 2026-04-30 physics.optics;q-bio.QM q-bio.QM https://arxiv.org/abs/2604.27726 False False 2604.27894 On Agentic Behavioral Modeling 2026-04-30 q-bio.NC q-bio.NC https://arxiv.org/abs/2604.27894 False False 2604.27913 Complex Effects of Salt on Small-Angle X-ray Scattering of BSA Originate From the Interplay of Ions and Hydration Water 2026-04-30 physics.soft;q-bio.BM q-bio.BM https://arxiv.org/abs/2604.27913 False False 2604.28007 Multisensory learning recruits visual neurons into an olfactory memory engram 2026-04-30 q-bio.NC q-bio.NC https://arxiv.org/abs/2604.28007 False False 2605.00067 EPITIME: A Computational Framework for Integral Epidemic Models with Structure-Preserving Discretizations 2026-04-30 q-bio.PE;q-bio.QM q-bio.PE https://arxiv.org/abs/2605.00067 False False 2605.00074 CRC-Screen: Certified DNA-Synthesis Hazard Screening Under Taxonomic Shift 2026-04-30 cs.AI;q-bio.GN q-bio.GN https://arxiv.org/abs/2605.00074 False False 2605.00225 From Birdsong to Rumbles: Classifying Elephant Calls with Out-of-Species Embeddings 2026-04-30 cs.LG;cs.SD;eess.AS;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.00225 False False 2605.00272 LNODE: latent dynamics reveal the shared spatiotemporal structure of amyloid-$β$ progression 2026-04-30 q-bio.QM q-bio.QM https://arxiv.org/abs/2605.00272 False False 2605.00067 EPITIME: A Computational Framework for Integral Epidemic Models with Structure-Preserving Discretizations 2026-04-30 q-bio.PE;q-bio.QM q-bio.PE https://arxiv.org/abs/2605.00067 False False 2605.00074 CRC-Screen: Certified DNA-Synthesis Hazard Screening Under Taxonomic Shift 2026-04-30 cs.AI;q-bio.GN q-bio.GN https://arxiv.org/abs/2605.00074 False False 2605.00225 From Birdsong to Rumbles: Classifying Elephant Calls with Out-of-Species Embeddings 2026-04-30 cs.LG;cs.SD;eess.AS;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.00225 False False 2605.00272 LNODE: latent dynamics reveal the shared spatiotemporal structure of amyloid-$β$ progression 2026-04-30 q-bio.QM q-bio.QM https://arxiv.org/abs/2605.00272 False False 2605.00925 Linking spatial biology and clinical histology via Haiku 2026-04-30 cs.CV;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.00925 False False 2605.00930 CellxPert: Inference-Time MCMC Steering of a Multi-Omics Single-Cell Foundation Model for In-Silico Perturbation 2026-04-30 cs.AI;q-bio.GN q-bio.GN https://arxiv.org/abs/2605.00930 False False 2605.00925 Linking spatial biology and clinical histology via Haiku 2026-04-30 cs.CV;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.00925 False False 2605.00930 CellxPert: Inference-Time MCMC Steering of a Multi-Omics Single-Cell Foundation Model for In-Silico Perturbation 2026-04-30 cs.AI;q-bio.GN q-bio.GN https://arxiv.org/abs/2605.00930 False False 2605.02934 Statistical analysis of virion-cell interactions mediated by peptide nanofibrils and peptide amphiphiles using STEM tomography 2026-04-30 physics.bio-ph;physics.mtrl-sci;q-bio.SC;stat.AP q-bio.SC https://arxiv.org/abs/2605.02934 False False 2605.02934 Statistical analysis of virion-cell interactions mediated by peptide nanofibrils and peptide amphiphiles using STEM tomography 2026-04-30 physics.bio-ph;physics.mtrl-sci;q-bio.SC;stat.AP q-bio.SC https://arxiv.org/abs/2605.02934 False False 2605.04097 CTM-AI: A Blueprint for General AI Inspired by a Model of Consciousness 2026-04-30 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.04097 False False 2605.04097 CTM-AI: A Blueprint for General AI Inspired by a Model of Consciousness 2026-04-30 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.04097 False False 2605.00074 CRC-Screen: Certified DNA-Synthesis Hazard Screening Under Taxonomic Shift 2026-04-30 cs.AI;q-bio.GN q-bio.GN https://arxiv.org/abs/2605.00074 False False 2605.00074 CRC-Screen: Certified DNA-Synthesis Hazard Screening Under Taxonomic Shift 2026-04-30 cs.AI;q-bio.GN q-bio.GN https://arxiv.org/abs/2605.00074 False False 2604.27583 Simulating Infant First-Person Sensorimotor Experience via Motion Retargeting from Babies to Humanoids 2026-04-30 cs.RO;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.27583 False False 2604.27583 Simulating Infant First-Person Sensorimotor Experience via Motion Retargeting from Babies to Humanoids 2026-04-30 cs.RO;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.27583 False False 2604.26302 A Thermodynamic Analysis of Enhanced Metastability in Isochoric Supercooled Liquids 2026-04-29 physics.soft;q-bio.QM q-bio.QM https://arxiv.org/abs/2604.26302 False False 2604.26498 Do Larger Models Really Win in Drug Discovery? A Benchmark Assessment of Model Scaling in AI-Driven Molecular Property and Activity Prediction 2026-04-29 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2604.26498 False False 2604.26517 MTCurv: Deep learning for direct microtubule curvature mapping in noisy fluorescence microscopy images 2026-04-29 cs.CV;q-bio.CB q-bio.CB https://arxiv.org/abs/2604.26517 False False 2604.26589 Rare but Resilient: Dispersal diversity buffers species vulnerability 2026-04-29 physics.stat-mech;q-bio.PE q-bio.PE https://arxiv.org/abs/2604.26589 False False 2604.26700 Parsimonious computational inference protocol for Boolean networks: Application to osteogenesis 2026-04-29 q-bio.MN q-bio.MN https://arxiv.org/abs/2604.26700 0.8043 0.8189 True 6 6.9 False 2604.26928 Theory of adhesion-driven self-organisation in growing tissues 2026-04-29 math.AP;physics.bio-ph;q-bio.TO q-bio.TO https://arxiv.org/abs/2604.26928 False False 2604.26939 Degree-dependent and distance-dependent contact rates interpolate between explosive, exponential and polynomial epidemic growth 2026-04-29 cs.SI;math.PR;q-bio.PE q-bio.PE https://arxiv.org/abs/2604.26939 False False 2604.26942 Hyper Input Convex Neural Networks for Shape Constrained Learning and Optimal Transport 2026-04-29 cs.LG;math.ST;q-bio.GN;stat.ME;stat.ML;stat.TH q-bio.GN https://arxiv.org/abs/2604.26942 False False 2604.26302 A Thermodynamic Analysis of Enhanced Metastability in Isochoric Supercooled Liquids 2026-04-29 physics.soft;q-bio.QM q-bio.QM https://arxiv.org/abs/2604.26302 False False 2604.26498 Do Larger Models Really Win in Drug Discovery? A Benchmark Assessment of Model Scaling in AI-Driven Molecular Property and Activity Prediction 2026-04-29 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2604.26498 False False 2604.26517 MTCurv: Deep learning for direct microtubule curvature mapping in noisy fluorescence microscopy images 2026-04-29 cs.CV;q-bio.CB q-bio.CB https://arxiv.org/abs/2604.26517 False False 2604.26589 Rare but Resilient: Dispersal diversity buffers species vulnerability 2026-04-29 physics.stat-mech;q-bio.PE q-bio.PE https://arxiv.org/abs/2604.26589 False False 2604.26700 Parsimonious computational inference protocol for Boolean networks: Application to osteogenesis 2026-04-29 q-bio.MN q-bio.MN https://arxiv.org/abs/2604.26700 0.8043 0.8189 True 6 6.9 False 2604.26928 Theory of adhesion-driven self-organisation in growing tissues 2026-04-29 math.AP;physics.bio-ph;q-bio.TO q-bio.TO https://arxiv.org/abs/2604.26928 False False 2604.26939 Degree-dependent and distance-dependent contact rates interpolate between explosive, exponential and polynomial epidemic growth 2026-04-29 cs.SI;math.PR;q-bio.PE q-bio.PE https://arxiv.org/abs/2604.26939 False False 2604.26942 Hyper Input Convex Neural Networks for Shape Constrained Learning and Optimal Transport 2026-04-29 cs.LG;math.ST;q-bio.GN;stat.ME;stat.ML;stat.TH q-bio.GN https://arxiv.org/abs/2604.26942 False False 2604.27113 Modeling the impact of host diversity on the evolution of vector feeding preferences and implications for disease control 2026-04-29 math.DS;physics.AO;q-bio.PE q-bio.PE https://arxiv.org/abs/2604.27113 False False 2604.27124 Better Models, Faster Training: Sigmoid Attention for single-cell Foundation Models 2026-04-29 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2604.27124 False False 2604.27113 Modeling the impact of host diversity on the evolution of vector feeding preferences and implications for disease control 2026-04-29 math.DS;physics.AO;q-bio.PE q-bio.PE https://arxiv.org/abs/2604.27113 False False 2604.27124 Better Models, Faster Training: Sigmoid Attention for single-cell Foundation Models 2026-04-29 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2604.27124 False False 2605.10947 Interpretable EEG Microstate Discovery via Variational Deep Embedding: A Systematic Architecture Search with Multi-Quadrant Evaluation 2026-04-29 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.10947 False False 2605.10947 Interpretable EEG Microstate Discovery via Variational Deep Embedding: A Systematic Architecture Search with Multi-Quadrant Evaluation 2026-04-29 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.10947 False False 2605.10947 Interpretable EEG Microstate Discovery via Variational Deep Embedding: A Systematic Architecture Search with Multi-Quadrant Evaluation 2026-04-29 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.10947 False False 2605.10947 Interpretable EEG Microstate Discovery via Variational Deep Embedding: A Systematic Architecture Search with Multi-Quadrant Evaluation 2026-04-29 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.10947 False False 2604.26498 Do Larger Models Really Win in Drug Discovery? A Benchmark Assessment of Model Scaling in AI-Driven Molecular Property and Activity Prediction 2026-04-29 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2604.26498 False False 2604.26498 Do Larger Models Really Win in Drug Discovery? A Benchmark Assessment of Model Scaling in AI-Driven Molecular Property and Activity Prediction 2026-04-29 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2604.26498 False False 2604.26498 Do Larger Models Really Win in Drug Discovery? A Benchmark Assessment of Model Scaling in AI-Driven Molecular Property and Activity Prediction 2026-04-29 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2604.26498 False False 2604.27113 Host diversity and adaptive vector feeding preferences shape disease burden in vector-borne diseases 2026-04-29 math.DS;physics.AO;q-bio.PE q-bio.PE https://arxiv.org/abs/2604.27113 False False 2604.27113 Host diversity and adaptive vector feeding preferences shape disease burden in vector-borne diseases 2026-04-29 math.DS;physics.AO;q-bio.PE q-bio.PE https://arxiv.org/abs/2604.27113 False False 2604.26589 Dispersal diversity buffers species vulnerability to local extinction 2026-04-29 physics.stat-mech;q-bio.PE q-bio.PE https://arxiv.org/abs/2604.26589 False False 2604.26589 Dispersal diversity buffers species vulnerability to local extinction 2026-04-29 physics.stat-mech;q-bio.PE q-bio.PE https://arxiv.org/abs/2604.26589 False False 2604.25180 On a Keller-Segel type equation to model Brain Microvascular Endothelial Cells growth's patterns 2026-04-28 math.DS;q-bio.QM q-bio.QM https://arxiv.org/abs/2604.25180 False False 2604.25233 A Combinatorial Optimisation Approach to Multi-factorial Gap-filling in Genome-scale Metabolic Models (GEMs) 2026-04-28 math.OC;q-bio.GN q-bio.GN https://arxiv.org/abs/2604.25233 False False 2604.25244 Learning Structure, Energy, and Dynamics: A Survey of Artificial Intelligence for Protein Dynamics 2026-04-28 cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2604.25244 False False 2604.25371 PhyloSDF: Phylogenetically-Conditioned Neural Generation of 3D Skull Morphology via Residual Flow Matching 2026-04-28 cs.CV;q-bio.QM q-bio.QM https://arxiv.org/abs/2604.25371 False False 2604.25415 One-shot emergency psychiatric triage across 15 frontier AI chatbots 2026-04-28 cs.AI;cs.HC;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.25415 False False 2604.25592 A geometry aware framework enhances noninvasive mapping of whole human brain dynamics 2026-04-28 eess.SP;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.25592 False False 2604.25701 Bayesian Rate Inference for Sequence Motif Dynamics in Systems of Reactive Nucleic Acids 2026-04-28 physics.bio-ph;physics.data-an;q-bio.BM;q-bio.MN;q-bio.PE q-bio.BM https://arxiv.org/abs/2604.25701 False False 2604.25714 A modelling perspective on mosquito infectiousness: time-varying transmission competence in arbovirus vector 2026-04-28 q-bio.PE q-bio.PE https://arxiv.org/abs/2604.25714 False False 2604.25750 From lab to outbreak: experimental mosquito extrinsic incubation period distributions shape dengue epidemic dynamics 2026-04-28 q-bio.PE q-bio.PE https://arxiv.org/abs/2604.25750 False False 2604.25180 On a Keller-Segel type equation to model Brain Microvascular Endothelial Cells growth's patterns 2026-04-28 math.DS;q-bio.QM q-bio.QM https://arxiv.org/abs/2604.25180 False False 2604.25233 A Combinatorial Optimisation Approach to Multi-factorial Gap-filling in Genome-scale Metabolic Models (GEMs) 2026-04-28 math.OC;q-bio.GN q-bio.GN https://arxiv.org/abs/2604.25233 False False 2604.25244 Learning Structure, Energy, and Dynamics: A Survey of Artificial Intelligence for Protein Dynamics 2026-04-28 cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2604.25244 False False 2604.25371 PhyloSDF: Phylogenetically-Conditioned Neural Generation of 3D Skull Morphology via Residual Flow Matching 2026-04-28 cs.CV;q-bio.QM q-bio.QM https://arxiv.org/abs/2604.25371 False False 2604.25415 One-shot emergency psychiatric triage across 15 frontier AI chatbots 2026-04-28 cs.AI;cs.HC;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.25415 False False 2604.25592 A geometry aware framework enhances noninvasive mapping of whole human brain dynamics 2026-04-28 eess.SP;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.25592 False False 2604.25701 Bayesian Rate Inference for Sequence Motif Dynamics in Systems of Reactive Nucleic Acids 2026-04-28 physics.bio-ph;physics.data-an;q-bio.BM;q-bio.MN;q-bio.PE q-bio.BM https://arxiv.org/abs/2604.25701 False False 2604.25750 From lab to outbreak: experimental mosquito extrinsic incubation period distributions shape dengue epidemic dynamics 2026-04-28 q-bio.PE q-bio.PE https://arxiv.org/abs/2604.25750 False False 2604.25986 Robust Clustering Analysis of Genes Related to Age-related Macular Degeneration using RNA-Seq 2026-04-28 q-bio.GN q-bio.GN https://arxiv.org/abs/2604.25986 False False 2604.26060 The Curse of Black Sigatoka: A Backward Bifurcation Perspective 2026-04-28 math.DS;q-bio.PE q-bio.PE https://arxiv.org/abs/2604.26060 False False 2604.26070 Observable Neural ODEs for Identifiable Causal Forecasting in Continuous Time 2026-04-28 cs.LG;math.OC;math.ST;q-bio.QM;stat.TH q-bio.QM https://arxiv.org/abs/2604.26070 False False 2604.26082 How is gene-regulatory evolution affected by cell-to-cell variability? 2026-04-28 q-bio.PE q-bio.PE https://arxiv.org/abs/2604.26082 False False 2604.25714 A modelling perspective on mosquito infectiousness: time-varying transmission competence in arbovirus vector 2026-04-28 q-bio.PE q-bio.PE https://arxiv.org/abs/2604.25714 False False 2604.25714 A modelling perspective on mosquito infectiousness: time-varying transmission competence in arbovirus vector 2026-04-28 q-bio.PE q-bio.PE https://arxiv.org/abs/2604.25714 False False 2604.25986 Robust Clustering Analysis of Genes Related to Age-related Macular Degeneration using RNA-Seq 2026-04-28 q-bio.GN q-bio.GN https://arxiv.org/abs/2604.25986 False False 2604.26060 The Curse of Black Sigatoka: A Backward Bifurcation Perspective 2026-04-28 math.DS;q-bio.PE q-bio.PE https://arxiv.org/abs/2604.26060 False False 2604.26070 Observable Neural ODEs for Identifiable Causal Forecasting in Continuous Time 2026-04-28 cs.LG;math.OC;math.ST;q-bio.QM;stat.TH q-bio.QM https://arxiv.org/abs/2604.26070 False False 2604.26082 How is gene-regulatory evolution affected by cell-to-cell variability? 2026-04-28 q-bio.PE q-bio.PE https://arxiv.org/abs/2604.26082 False False 2604.26975 T-cell repertoire response in individuals with post-acute sequelae of COVID-19 2026-04-28 q-bio.GN q-bio.GN https://arxiv.org/abs/2604.26975 False False 2604.26975 T-cell repertoire response in individuals with post-acute sequelae of COVID-19 2026-04-28 q-bio.GN q-bio.GN https://arxiv.org/abs/2604.26975 False False 2604.25180 On a Keller-Segel type equation to model Brain Microvascular Endothelial Cells growth's patterns 2026-04-28 math.DS;q-bio.QM q-bio.QM https://arxiv.org/abs/2604.25180 False False 2604.25180 On a Keller-Segel type equation to model Brain Microvascular Endothelial Cells growth's patterns 2026-04-28 math.DS;q-bio.QM q-bio.QM https://arxiv.org/abs/2604.25180 False False 2604.26070 Observable Neural ODEs for Identifiable Causal Forecasting in Continuous Time 2026-04-28 cs.LG;math.OC;math.ST;q-bio.QM;stat.TH q-bio.QM https://arxiv.org/abs/2604.26070 False False 2604.26070 Observable Neural ODEs for Identifiable Causal Forecasting in Continuous Time 2026-04-28 cs.LG;math.OC;math.ST;q-bio.QM;stat.TH q-bio.QM https://arxiv.org/abs/2604.26070 False False 2604.25701 Bayesian Rate Inference for Sequence Motif Dynamics in Systems of Reactive Nucleic Acids 2026-04-28 physics.bio-ph;physics.data-an;q-bio.BM;q-bio.MN;q-bio.PE q-bio.BM https://arxiv.org/abs/2604.25701 False False 2604.25371 PhyloSDF: Phylogenetically-Conditioned Neural Generation of 3D Skull Morphology via Residual Flow Matching 2026-04-28 cs.CV;q-bio.QM q-bio.QM https://arxiv.org/abs/2604.25371 False False 2604.25371 PhyloSDF: Phylogenetically-Conditioned Neural Generation of 3D Skull Morphology via Residual Flow Matching 2026-04-28 cs.CV;q-bio.QM q-bio.QM https://arxiv.org/abs/2604.25371 False False 2604.23924 Agentic AI platforms for autonomous training and rule induction of human-human and virus-human protein-protein interactions 2026-04-27 cs.AI;q-bio.BM q-bio.BM https://arxiv.org/abs/2604.23924 False False 2604.23933 Robust and Clinically Reliable EEG Biomarkers: A Cross Population Framework for Generalizable Parkinson's Disease Detection 2026-04-27 cs.LG;eess.SP;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.23933 False False 2604.23984 Polynomial-time completion of phylogenetic tree sets 2026-04-27 cs.CC;q-bio.PE q-bio.PE https://arxiv.org/abs/2604.23984 False False 2604.24141 Solution of a large nonlinear recurrent neural network at fixed connectivity 2026-04-27 physics.dis-nn;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.24141 False False 2604.24201 CMGL: Confidence-guided Multi-omics Graph Learning for Cancer Subtype Classification 2026-04-27 cs.LG;q-bio.GN;q-bio.MN q-bio.GN https://arxiv.org/abs/2604.24201 False False 2604.24321 From Players to Participants: Citizen Science and Video Games to Understand Cognition 2026-04-27 cs.HC;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.24321 False False 2604.24365 Persistent and anti-persistent stride-to-stride fluctuations: an ARFIMA decomposition consistent with closed-loop sensorimotor control 2026-04-27 q-bio.NC;q-bio.QM q-bio.NC https://arxiv.org/abs/2604.24365 False False 2604.24499 Fisher Information and Dynamical Sampling I 2026-04-27 cs.IT;math.IT;q-bio.PE;stat.AP q-bio.PE https://arxiv.org/abs/2604.24499 False False 2604.24614 The Genetic and Environmental Architecture of the Human Functional Connectome 2026-04-27 q-bio.NC q-bio.NC https://arxiv.org/abs/2604.24614 False False 2604.24637 Cortex-Inspired Continual Learning: Unsupervised Instantiation and Recovery of Functional Task Networks 2026-04-27 cs.AI;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.24637 False False 2604.24673 Quantifying the effect of phenotype on clustering behaviour in melanoma: from monoculture to co-culture 2026-04-27 q-bio.CB q-bio.CB https://arxiv.org/abs/2604.24673 False False 2604.24714 Homology-based Morphometry of Brain Atrophy: Methods and Applications 2026-04-27 eess.IV;math.AT;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.24714 False False 2604.23924 Agentic AI platforms for autonomous training and rule induction of human-human and virus-human protein-protein interactions 2026-04-27 cs.AI;q-bio.BM q-bio.BM https://arxiv.org/abs/2604.23924 False False 2604.23933 Robust and Clinically Reliable EEG Biomarkers: A Cross Population Framework for Generalizable Parkinson's Disease Detection 2026-04-27 cs.LG;eess.SP;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.23933 False False 2604.23984 Polynomial-time completion of phylogenetic tree sets 2026-04-27 cs.CC;q-bio.PE q-bio.PE https://arxiv.org/abs/2604.23984 False False 2604.24141 Solution of a large nonlinear recurrent neural network at fixed connectivity 2026-04-27 physics.dis-nn;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.24141 False False 2604.24201 CMGL: Confidence-guided Multi-omics Graph Learning for Cancer Subtype Classification 2026-04-27 cs.LG;q-bio.GN;q-bio.MN q-bio.GN https://arxiv.org/abs/2604.24201 False False 2604.24321 From Players to Participants: Citizen Science and Video Games to Understand Cognition 2026-04-27 cs.HC;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.24321 False False 2604.24365 Persistent and anti-persistent stride-to-stride fluctuations: an ARFIMA decomposition consistent with closed-loop sensorimotor control 2026-04-27 q-bio.NC;q-bio.QM q-bio.NC https://arxiv.org/abs/2604.24365 False False 2604.24499 Fisher Information and Dynamical Sampling I 2026-04-27 cs.IT;math.IT;q-bio.PE;stat.AP q-bio.PE https://arxiv.org/abs/2604.24499 False False 2604.24614 The Genetic and Environmental Architecture of the Human Functional Connectome 2026-04-27 q-bio.NC q-bio.NC https://arxiv.org/abs/2604.24614 False False 2604.24637 Cortex-Inspired Continual Learning: Unsupervised Instantiation and Recovery of Functional Task Networks 2026-04-27 cs.AI;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.24637 False False 2604.24673 Quantifying the effect of phenotype on clustering behaviour in melanoma: from monoculture to co-culture 2026-04-27 q-bio.CB q-bio.CB https://arxiv.org/abs/2604.24673 False False 2604.24714 Homology-based Morphometry of Brain Atrophy: Methods and Applications 2026-04-27 eess.IV;math.AT;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.24714 False False 2604.24805 minAction.net: Energy-First Neural Architecture Design -- From Biological Principles to Systematic Validation 2026-04-27 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2604.24805 False False 2604.24913 Generative diffusion models for spatiotemporal influenza forecasting 2026-04-27 cs.LG;q-bio.PE q-bio.PE https://arxiv.org/abs/2604.24913 False False 2604.24942 Independent-Component-Based Encoding Models of Brain Activity During Story Comprehension 2026-04-27 cs.CL;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.24942 False False 2604.25038 Equation Learning for multiscale models of infectious diseases 2026-04-27 q-bio.PE q-bio.PE https://arxiv.org/abs/2604.25038 False False 2604.25062 Learning biophysical models of gene regulation with probability flow matching 2026-04-27 cs.LG;physics.bio-ph;q-bio.MN q-bio.MN https://arxiv.org/abs/2604.25062 False False 2604.24805 minAction.net: Energy-First Neural Architecture Design -- From Biological Principles to Systematic Validation 2026-04-27 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2604.24805 False False 2604.24913 Generative diffusion models for spatiotemporal influenza forecasting 2026-04-27 cs.LG;q-bio.PE q-bio.PE https://arxiv.org/abs/2604.24913 False False 2604.24942 Independent-Component-Based Encoding Models of Brain Activity During Story Comprehension 2026-04-27 cs.CL;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.24942 False False 2604.25038 Equation Learning for multiscale models of infectious diseases 2026-04-27 q-bio.PE q-bio.PE https://arxiv.org/abs/2604.25038 False False 2604.25062 Learning biophysical models of gene regulation with probability flow matching 2026-04-27 cs.LG;physics.bio-ph;q-bio.MN q-bio.MN https://arxiv.org/abs/2604.25062 False False 2604.24637 Cortex-Inspired Continual Learning: Unsupervised Instantiation and Recovery of Functional Task Networks 2026-04-27 cs.AI;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.24637 False False 2604.24805 minAction.net: Energy-First Neural Architecture Design -- From Biological Principles to Systematic Validation 2026-04-27 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2604.24805 False False 2604.24637 Cortex-Inspired Continual Learning: Unsupervised Instantiation and Recovery of Functional Task Networks 2026-04-27 cs.AI;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.24637 False False 2604.24805 minAction.net: Energy-First Neural Architecture Design -- From Biological Principles to Systematic Validation 2026-04-27 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2604.24805 False False 2605.00033 Sure About That Line? Approaching Confidence-Based, Real-Time Line Assignment in Reading Gaze Data 2026-04-27 cs.AI;cs.HC;cs.LG;eess.IV;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.00033 False False 2605.00033 Sure About That Line? Approaching Confidence-Based, Real-Time Line Assignment in Reading Gaze Data 2026-04-27 cs.AI;cs.HC;cs.LG;eess.IV;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.00033 False False 2604.24365 Persistent and anti-persistent stride-to-stride fluctuations: an ARFIMA decomposition consistent with closed-loop sensorimotor control 2026-04-27 q-bio.NC;q-bio.QM q-bio.NC https://arxiv.org/abs/2604.24365 False False 2604.24365 Persistent and anti-persistent stride-to-stride fluctuations: an ARFIMA decomposition consistent with closed-loop sensorimotor control 2026-04-27 q-bio.NC;q-bio.QM q-bio.NC https://arxiv.org/abs/2604.24365 False False 2604.24942 Independent-Component-Based Encoding Models of Brain Activity During Story Comprehension 2026-04-27 cs.CL;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.24942 False False 2604.24942 Independent-Component-Based Encoding Models of Brain Activity During Story Comprehension 2026-04-27 cs.CL;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.24942 False False 2604.24141 Solution of a chaotic neural network at fixed connectivity 2026-04-27 physics.dis-nn;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.24141 False False 2604.24141 Solution of a chaotic neural network at fixed connectivity 2026-04-27 physics.dis-nn;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.24141 False False 2604.23489 Linear equivalence of nonlinear recurrent neural networks 2026-04-26 physics.dis-nn;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.23489 False False 2604.23525 Triple Configuration of Brain Networks Based on Recurrent Neural Networks: The Synergistic Effects of Exogenous Stimuli, Task Demands, and Spontaneous Activity 2026-04-26 q-bio.NC q-bio.NC https://arxiv.org/abs/2604.23525 False False 2604.23562 EyeBrain: Left and Right Brain Lateralization Activity Classification Through Pupil Diameter and Fixation Duration 2026-04-26 cs.AI;cs.HC;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.23562 False False 2604.23679 Imaging Exploration of Molecular Subtypes in Tongue Squamous Cell Carcinoma 2026-04-26 q-bio.GN q-bio.GN https://arxiv.org/abs/2604.23679 False False 2604.23903 Integrative neurocybernetic modeling in the era of large-scale neuroscience 2026-04-26 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.23903 False False 2604.23489 Linear equivalence of nonlinear recurrent neural networks 2026-04-26 physics.dis-nn;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.23489 False False 2604.23525 Triple Configuration of Brain Networks Based on Recurrent Neural Networks: The Synergistic Effects of Exogenous Stimuli, Task Demands, and Spontaneous Activity 2026-04-26 q-bio.NC q-bio.NC https://arxiv.org/abs/2604.23525 False False 2604.23562 EyeBrain: Left and Right Brain Lateralization Activity Classification Through Pupil Diameter and Fixation Duration 2026-04-26 cs.AI;cs.HC;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.23562 False False 2604.23679 Imaging Exploration of Molecular Subtypes in Tongue Squamous Cell Carcinoma 2026-04-26 q-bio.GN q-bio.GN https://arxiv.org/abs/2604.23679 False False 2604.23903 Integrative neurocybernetic modeling in the era of large-scale neuroscience 2026-04-26 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.23903 False False 2604.23489 Linear equivalence of nonlinear recurrent neural networks 2026-04-26 physics.dis-nn;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.23489 False False 2604.23489 Linear equivalence of nonlinear recurrent neural networks 2026-04-26 physics.dis-nn;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.23489 False False 2604.23489 Linear equivalence of nonlinear recurrent neural networks 2026-04-26 physics.dis-nn;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.23489 False False 2604.23137 CNN-ViT Fusion with Adaptive Attention Gate for Brain Tumor MRI Classification: A Hybrid Deep Learning Model 2026-04-25 cs.AI;cs.CV;q-bio.QM q-bio.QM https://arxiv.org/abs/2604.23137 False False 2604.23151 Hydrodynamic interactions mask the true heterogeneity of a microscopic collective 2026-04-25 physics.AO;q-bio.CB q-bio.CB https://arxiv.org/abs/2604.23151 False False 2604.23243 Mean-Field and Pairwise Approaches for the SIRI Model on Poisson Networks 2026-04-25 physics.AO;q-bio.PE q-bio.PE https://arxiv.org/abs/2604.23243 False False 2604.23408 Messaging strategies and the emergence of echo chambers in collective decision-making 2026-04-25 physics.AO;q-bio.QM q-bio.QM https://arxiv.org/abs/2604.23408 False False 2604.23137 CNN-ViT Fusion with Adaptive Attention Gate for Brain Tumor MRI Classification: A Hybrid Deep Learning Model 2026-04-25 cs.AI;cs.CV;q-bio.QM q-bio.QM https://arxiv.org/abs/2604.23137 False False 2604.23151 Hydrodynamic interactions mask the true heterogeneity of a microscopic collective 2026-04-25 physics.AO;q-bio.CB q-bio.CB https://arxiv.org/abs/2604.23151 False False 2604.23243 Mean-Field and Pairwise Approaches for the SIRI Model on Poisson Networks 2026-04-25 physics.AO;q-bio.PE q-bio.PE https://arxiv.org/abs/2604.23243 False False 2604.23408 Messaging strategies and the emergence of echo chambers in collective decision-making 2026-04-25 physics.AO;q-bio.QM q-bio.QM https://arxiv.org/abs/2604.23408 False False 2604.22137 Earable Platform with Integrated Simultaneous EEG Sensing and Auditory Stimulation 2026-04-24 eess.SP;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.22137 False False 2604.22275 Early Preconfiguration Failure: A Novel Predictor of the Repetitive Subconcussion 2026-04-24 q-bio.NC q-bio.NC https://arxiv.org/abs/2604.22275 False False 2604.22440 The Cathaya argyrophylla Genome Reveals the Evolutionary Trade-offs of a Living Fossil 2026-04-24 q-bio.GN q-bio.GN https://arxiv.org/abs/2604.22440 False False 2604.22611 Simple sign epistasis and evolutionary detours in fitness landscapes 2026-04-24 physics.dis-nn;q-bio.PE q-bio.PE https://arxiv.org/abs/2604.22611 False False 2604.22716 What are the functions of primary visual cortex (V1)? 2026-04-24 q-bio.NC q-bio.NC https://arxiv.org/abs/2604.22716 False False 2604.22744 Multiplex Hypergraph Modeling of Higher Order Structures in Psychometric Networks 2026-04-24 cs.IT;cs.SI;math.IT;q-bio.QM q-bio.QM https://arxiv.org/abs/2604.22744 False False 2604.22137 Earable Platform with Integrated Simultaneous EEG Sensing and Auditory Stimulation 2026-04-24 eess.SP;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.22137 False False 2604.22275 Early Preconfiguration Failure: A Novel Predictor of the Repetitive Subconcussion 2026-04-24 q-bio.NC q-bio.NC https://arxiv.org/abs/2604.22275 False False 2604.22440 The Cathaya argyrophylla Genome Reveals the Evolutionary Trade-offs of a Living Fossil 2026-04-24 q-bio.GN q-bio.GN https://arxiv.org/abs/2604.22440 False False 2604.22611 Simple sign epistasis and evolutionary detours in fitness landscapes 2026-04-24 physics.dis-nn;q-bio.PE q-bio.PE https://arxiv.org/abs/2604.22611 False False 2604.22716 What are the functions of primary visual cortex (V1)? 2026-04-24 q-bio.NC q-bio.NC https://arxiv.org/abs/2604.22716 False False 2604.22744 Multiplex Hypergraph Modeling of Higher Order Structures in Psychometric Networks 2026-04-24 cs.IT;cs.SI;math.IT;q-bio.QM q-bio.QM https://arxiv.org/abs/2604.22744 False False 2604.22876 Stochastic reversal of deterministic selection in epidemic strain competition 2026-04-24 q-bio.PE q-bio.PE https://arxiv.org/abs/2604.22876 False False 2604.22997 HyperEvoGen: Exploring deep phylogeny using non-Euclidean variational inference 2026-04-24 q-bio.QM q-bio.QM https://arxiv.org/abs/2604.22997 False False 2604.23030 Vision as looking and seeing through a bottleneck 2026-04-24 q-bio.NC q-bio.NC https://arxiv.org/abs/2604.23030 False False 2604.22876 Stochastic reversal of deterministic selection in epidemic strain competition 2026-04-24 q-bio.PE q-bio.PE https://arxiv.org/abs/2604.22876 False False 2604.22997 HyperEvoGen: Exploring deep phylogeny using non-Euclidean variational inference 2026-04-24 q-bio.QM q-bio.QM https://arxiv.org/abs/2604.22997 False False 2604.23030 Vision as looking and seeing through a bottleneck 2026-04-24 q-bio.NC q-bio.NC https://arxiv.org/abs/2604.23030 False False 2604.21260 Calibeating Prediction-Powered Inference 2026-04-23 cs.AI;cs.LG;econ.EM;q-bio.QM;stat.ME;stat.ML q-bio.QM https://arxiv.org/abs/2604.21260 False False 2604.21263 Trustworthy Clinical Decision Support Using Meta-Predicates and Domain-Specific Languages 2026-04-23 cs.AI;cs.PL;cs.SE;q-bio.QM q-bio.QM https://arxiv.org/abs/2604.21263 False False 2604.21508 BioMiner: A Multi-modal System for Automated Mining of Protein-Ligand Bioactivity Data from Literature 2026-04-23 cs.AI;q-bio.BM q-bio.BM https://arxiv.org/abs/2604.21508 False False 2604.21573 CHRep: Cross-modal Histology Representation and Post-hoc Calibration for Spatial Gene Expression Prediction 2026-04-23 cs.CV;q-bio.QM q-bio.QM https://arxiv.org/abs/2604.21573 False False 2604.21655 Shaping nematic order in bacterial films with single-cell resolution patterning 2026-04-23 physics.bio-ph;physics.soft;q-bio.CB q-bio.CB https://arxiv.org/abs/2604.21655 False False 2604.21662 Integrating opportunities and parametrized signatures for improved mutational processes estimation in extended sequence contexts 2026-04-23 q-bio.PE;stat.AP q-bio.PE https://arxiv.org/abs/2604.21662 False False 2604.21744 Agentic AI-assisted coding offers a unique opportunity to instill epistemic grounding during software development 2026-04-23 cs.AI;cs.SE;q-bio.BM q-bio.BM https://arxiv.org/abs/2604.21744 False False 2604.21780 Only Brains Align with Brains: Cross-Region Alignment Patterns Expose Limits of Normative Models 2026-04-23 q-bio.NC q-bio.NC https://arxiv.org/abs/2604.21780 False False 2604.21809 Quotient-Space Diffusion Models 2026-04-23 cs.AI;cs.LG;q-bio.QM;stat.ML q-bio.QM https://arxiv.org/abs/2604.21809 False False 2604.21828 ProDock: From multi-target consensus docking into database-backed storage 2026-04-23 q-bio.QM q-bio.QM https://arxiv.org/abs/2604.21828 False False 2604.21832 Hierarchical organization of critical brain dynamics 2026-04-23 physics.bio-ph;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.21832 False False 2604.21836 Modulating Cross-Modal Convergence with Single-Stimulus, Intra-Modal Dispersion 2026-04-23 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.21836 False False 2604.21909 Directional Confusions Reveal Divergent Inductive Biases Through Rate-Distortion Geometry in Human and Machine Vision 2026-04-23 cs.CV;cs.IT;math.IT;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.21909 False False 2604.21260 Calibeating Prediction-Powered Inference 2026-04-23 cs.AI;cs.LG;econ.EM;q-bio.QM;stat.ME;stat.ML q-bio.QM https://arxiv.org/abs/2604.21260 False False 2604.21263 Trustworthy Clinical Decision Support Using Meta-Predicates and Domain-Specific Languages 2026-04-23 cs.AI;cs.PL;cs.SE;q-bio.QM q-bio.QM https://arxiv.org/abs/2604.21263 False False 2604.21508 BioMiner: A Multi-modal System for Automated Mining of Protein-Ligand Bioactivity Data from Literature 2026-04-23 cs.AI;q-bio.BM q-bio.BM https://arxiv.org/abs/2604.21508 False False 2604.21573 CHRep: Cross-modal Histology Representation and Post-hoc Calibration for Spatial Gene Expression Prediction 2026-04-23 cs.CV;q-bio.QM q-bio.QM https://arxiv.org/abs/2604.21573 False False 2604.21655 Shaping nematic order in bacterial films with single-cell resolution patterning 2026-04-23 physics.bio-ph;physics.soft;q-bio.CB q-bio.CB https://arxiv.org/abs/2604.21655 False False 2604.21662 Integrating opportunities and parametrized signatures for improved mutational processes estimation in extended sequence contexts 2026-04-23 q-bio.PE;stat.AP q-bio.PE https://arxiv.org/abs/2604.21662 False False 2604.21744 Agentic AI-assisted coding offers a unique opportunity to instill epistemic grounding during software development 2026-04-23 cs.AI;cs.SE;q-bio.BM q-bio.BM https://arxiv.org/abs/2604.21744 False False 2604.21780 Only Brains Align with Brains: Cross-Region Alignment Patterns Expose Limits of Normative Models 2026-04-23 q-bio.NC q-bio.NC https://arxiv.org/abs/2604.21780 False False 2604.21809 Quotient-Space Diffusion Models 2026-04-23 cs.AI;cs.LG;q-bio.QM;stat.ML q-bio.QM https://arxiv.org/abs/2604.21809 False False 2604.21828 ProDock: From multi-target consensus docking into database-backed storage 2026-04-23 q-bio.QM q-bio.QM https://arxiv.org/abs/2604.21828 False False 2604.21832 Hierarchical organization of critical brain dynamics 2026-04-23 physics.bio-ph;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.21832 False False 2604.21836 Modulating Cross-Modal Convergence with Single-Stimulus, Intra-Modal Dispersion 2026-04-23 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.21836 False False 2604.21909 Directional Confusions Reveal Divergent Inductive Biases Through Rate-Distortion Geometry in Human and Machine Vision 2026-04-23 cs.CV;cs.IT;math.IT;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.21909 False False 2604.21951 Supregraph: Enabling Information-Optimal Assembly Graph Representation of a Read Set 2026-04-23 q-bio.GN q-bio.GN https://arxiv.org/abs/2604.21951 False False 2604.21988 Local growth laws determine global shape of molluscan shells 2026-04-23 math.AP;math.GR;q-bio.PE;q-bio.QM q-bio.PE https://arxiv.org/abs/2604.21988 False False 2604.22018 Foundation models for discovering robust biomarkers of neurological disorders from dynamic functional connectivity 2026-04-23 cs.AI;cs.LG;eess.SP;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.22018 False False 2604.22116 Resting-State EEG Biomarkers of Tinnitus Robust to Cross-Subject and Cross-Platform Variation 2026-04-23 eess.SP;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.22116 False False 2604.22122 Global remote sensing reveals vegetation clustering as a physical footprint of shifting aridity trends in drylands 2026-04-23 physics.PS;physics.bio-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2604.22122 False False 2604.21951 Supregraph: Enabling Information-Optimal Assembly Graph Representation of a Read Set 2026-04-23 q-bio.GN q-bio.GN https://arxiv.org/abs/2604.21951 False False 2604.21988 Local growth laws determine global shape of molluscan shells 2026-04-23 math.AP;math.GR;q-bio.PE;q-bio.QM q-bio.PE https://arxiv.org/abs/2604.21988 False False 2604.22018 Foundation models for discovering robust biomarkers of neurological disorders from dynamic functional connectivity 2026-04-23 cs.AI;cs.LG;eess.SP;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.22018 False False 2604.22116 Resting-State EEG Biomarkers of Tinnitus Robust to Cross-Subject and Cross-Platform Variation 2026-04-23 eess.SP;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.22116 False False 2604.22122 Global remote sensing reveals vegetation clustering as a physical footprint of shifting aridity trends in drylands 2026-04-23 physics.PS;physics.bio-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2604.22122 False False 2605.04088 Noise-Accelerated Kramers Escape and Coherence Resonance in a 5D Neural Manifold 2026-04-23 math.PR;physics.CD;physics.bio-ph;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.04088 False False 2605.04088 Noise-accelerated Kramers Escape and Coherence Resonance in a 5D Neural Manifold 2026-04-23 math.PR;physics.CD;physics.bio-ph;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.04088 False False 2605.04088 Noise-accelerated Kramers Escape and Coherence Resonance in a 5D Neural Manifold 2026-04-23 math.PR;physics.CD;physics.bio-ph;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.04088 False False 2604.21809 Quotient-Space Diffusion Models 2026-04-23 cs.AI;cs.LG;q-bio.QM;stat.ML q-bio.QM https://arxiv.org/abs/2604.21809 False False 2604.21909 Directional Confusions Reveal Divergent Inductive Biases Through Rate-Distortion Geometry in Human and Machine Vision 2026-04-23 cs.CV;cs.IT;math.IT;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.21909 False False 2604.21809 Quotient-Space Diffusion Models 2026-04-23 cs.AI;cs.LG;q-bio.QM;stat.ML q-bio.QM https://arxiv.org/abs/2604.21809 False False 2604.21909 Directional Confusions Reveal Divergent Inductive Biases Through Rate-Distortion Geometry in Human and Machine Vision 2026-04-23 cs.CV;cs.IT;math.IT;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.21909 False False 2605.04088 Noise-Induced Transitions and Coherence Resonance in a 5D Conductance-Based Neuronal Model 2026-04-23 math.PR;physics.CD;physics.bio-ph;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.04088 False False 2604.21744 Agentic AI-assisted coding offers a unique opportunity to instill epistemic grounding during software development 2026-04-23 cs.AI;cs.SE;q-bio.BM q-bio.BM https://arxiv.org/abs/2604.21744 False False 2605.04088 Noise-Induced Transitions and Coherence Resonance in a 5D Conductance-Based Neuronal Model 2026-04-23 math.PR;physics.CD;physics.bio-ph;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.04088 False False 2604.21744 Agentic AI-assisted coding offers a unique opportunity to instill epistemic grounding during software development 2026-04-23 cs.AI;cs.SE;q-bio.BM q-bio.BM https://arxiv.org/abs/2604.21744 False False 2604.21988 Local growth laws determine global shape of molluscan shells 2026-04-23 math.AP;math.GR;q-bio.PE;q-bio.QM q-bio.PE https://arxiv.org/abs/2604.21988 False False 2604.20263 AROMA: Augmented Reasoning Over a Multimodal Architecture for Virtual Cell Genetic Perturbation Modeling 2026-04-22 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2604.20263 False False 2604.20469 Indirect Prey-taxis VS a Shortwave External Signal in Multiple Dimensions 2026-04-22 math.AP;q-bio.PE q-bio.PE https://arxiv.org/abs/2604.20469 False False 2604.20477 Emergence biases in molecular evolution 2026-04-22 q-bio.PE q-bio.PE https://arxiv.org/abs/2604.20477 False False 2604.20488 Conditional Monte Carlo Tree Diffusion for Designing Cell-Type-Specific and Biologically Faithful Regulatory DNA 2026-04-22 q-bio.GN q-bio.GN https://arxiv.org/abs/2604.20488 False False 2604.20524 Response time of lateral predictive coding and benefits of modular structures 2026-04-22 cs.NE;physics.dis-nn;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.20524 False False 2604.20615 Semi supervised GAN for smart microscopy, fast and data efficient cell cycle classification 2026-04-22 q-bio.QM q-bio.QM https://arxiv.org/abs/2604.20615 False False 2604.20626 Centering Ecological Goals in Automated Identification of Individual Animals 2026-04-22 cs.AI;q-bio.PE q-bio.PE https://arxiv.org/abs/2604.20626 False False 2604.20629 Rates of forgetting for the sequentially Markov coalescent 2026-04-22 math.PR;q-bio.PE q-bio.PE https://arxiv.org/abs/2604.20629 False False 2604.20782 LAFA: A Framework for Reproducible Longitudinal Assessment of Protein Function Annotation Models 2026-04-22 q-bio.BM;q-bio.QM q-bio.BM https://arxiv.org/abs/2604.20782 False False 2604.20824 Closing the Domain Gap in Biomedical Imaging by In-Context Control Samples 2026-04-22 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2604.20824 False False 2604.20263 AROMA: Augmented Reasoning Over a Multimodal Architecture for Virtual Cell Genetic Perturbation Modeling 2026-04-22 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2604.20263 False False 2604.20469 Indirect Prey-taxis VS a Shortwave External Signal in Multiple Dimensions 2026-04-22 math.AP;q-bio.PE q-bio.PE https://arxiv.org/abs/2604.20469 False False 2604.20477 Emergence biases in molecular evolution 2026-04-22 q-bio.PE q-bio.PE https://arxiv.org/abs/2604.20477 False False 2604.20488 Conditional Monte Carlo Tree Diffusion for Designing Cell-Type-Specific and Biologically Faithful Regulatory DNA 2026-04-22 q-bio.GN q-bio.GN https://arxiv.org/abs/2604.20488 False False 2604.20524 Response time of lateral predictive coding and benefits of modular structures 2026-04-22 cs.NE;physics.dis-nn;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.20524 False False 2604.20615 Semi supervised GAN for smart microscopy, fast and data efficient cell cycle classification 2026-04-22 q-bio.QM q-bio.QM https://arxiv.org/abs/2604.20615 False False 2604.20626 Centering Ecological Goals in Automated Identification of Individual Animals 2026-04-22 cs.AI;q-bio.PE q-bio.PE https://arxiv.org/abs/2604.20626 False False 2604.20629 Rates of forgetting for the sequentially Markov coalescent 2026-04-22 math.PR;q-bio.PE q-bio.PE https://arxiv.org/abs/2604.20629 False False 2604.20782 LAFA: A Framework for Reproducible Longitudinal Assessment of Protein Function Annotation Models 2026-04-22 q-bio.BM;q-bio.QM q-bio.BM https://arxiv.org/abs/2604.20782 False False 2604.20824 Closing the Domain Gap in Biomedical Imaging by In-Context Control Samples 2026-04-22 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2604.20824 False False 2604.20942 VARIANT: Web Server for Decoding and Analyzing Viral Mutations at Genome and Protein Levels 2026-04-22 q-bio.BM;q-bio.QM q-bio.BM https://arxiv.org/abs/2604.20942 False False 2604.20981 PanGuide3D: Cohort-Robust Pancreas Tumor Segmentation via Probabilistic Pancreas Conditioning and a Transformer Bottleneck 2026-04-22 cs.CV;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2604.20981 False False 2604.21011 Micro-DualNet: Dual-Path Spatio-Temporal Network for Micro-Action Recognition 2026-04-22 cs.CV;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.21011 False False 2604.21095 TorchGWAS : GPU-accelerated GWAS for thousands of quantitative phenotypes 2026-04-22 cs.DC;cs.SE;q-bio.GN q-bio.GN https://arxiv.org/abs/2604.21095 False False 2604.20942 VARIANT: Web Server for Decoding and Analyzing Viral Mutations at Genome and Protein Levels 2026-04-22 q-bio.BM;q-bio.QM q-bio.BM https://arxiv.org/abs/2604.20942 False False 2604.20981 PanGuide3D: Cohort-Robust Pancreas Tumor Segmentation via Probabilistic Pancreas Conditioning and a Transformer Bottleneck 2026-04-22 cs.CV;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2604.20981 False False 2604.21011 Micro-DualNet: Dual-Path Spatio-Temporal Network for Micro-Action Recognition 2026-04-22 cs.CV;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.21011 False False 2604.21095 TorchGWAS : GPU-accelerated GWAS for thousands of quantitative phenotypes 2026-04-22 cs.DC;cs.SE;q-bio.GN q-bio.GN https://arxiv.org/abs/2604.21095 False False 2604.20615 Semi supervised GAN for smart microscopy, fast and data efficient cell cycle classification 2026-04-22 q-bio.QM q-bio.QM https://arxiv.org/abs/2604.20615 False False 2604.20615 Semi supervised GAN for smart microscopy, fast and data efficient cell cycle classification 2026-04-22 q-bio.QM q-bio.QM https://arxiv.org/abs/2604.20615 False False 2604.26970 Not All Memories Age the Same: Autodiscovery of Adaptive Decay in Knowledge Graphs 2026-04-22 cs.AI;cs.IR;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2604.26970 False False 2604.26970 Not All Memories Age the Same: Autodiscovery of Adaptive Decay in Knowledge Graphs 2026-04-22 cs.AI;cs.IR;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2604.26970 False False 2605.00025 MoDAl: Self-Supervised Neural Modality Discovery via Decorrelation for Speech Neuroprosthesis 2026-04-22 cs.CL;cs.HC;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.00025 False False 2605.00026 Toward Magnetic-Field-Free Quantum Computing and Quantum Reservoir Computing in Engineered Organic Materials: A Unified Framework from the 3-Layer Quantum Brain Hypothesis 2026-04-22 physics.quant-ph;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.00026 False False 2605.00025 MoDAl: Self-Supervised Neural Modality Discovery via Decorrelation for Speech Neuroprosthesis 2026-04-22 cs.CL;cs.HC;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.00025 False False 2605.00026 Toward Magnetic-Field-Free Quantum Computing and Quantum Reservoir Computing in Engineered Organic Materials: A Unified Framework from the 3-Layer Quantum Brain Hypothesis 2026-04-22 physics.quant-ph;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.00026 False False 2605.00865 How Well Can We Decode Vowels from Auditory EEG -- A Rigorous Cross-Subject Benchmark with Honest Assessment 2026-04-22 cs.CL;cs.CV;cs.LG;cs.SD;eess.SP;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.00865 False False 2604.20469 Short-wave signal versus indirect prey-taxis 2026-04-22 math.AP;q-bio.PE q-bio.PE https://arxiv.org/abs/2604.20469 False False 2605.00865 How Well Can We Decode Vowels from Auditory EEG -- A Rigorous Cross-Subject Benchmark with Honest Assessment 2026-04-22 cs.CL;cs.CV;cs.LG;cs.SD;eess.SP;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.00865 False False 2604.20469 Short-wave signal versus indirect prey-taxis 2026-04-22 math.AP;q-bio.PE q-bio.PE https://arxiv.org/abs/2604.20469 False False 2605.00026 The $γ_c$-Peak: Covariant Recovery on Four Organic Qubit Platforms 2026-04-22 physics.quant-ph;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.00026 False False 2605.00026 The $γ_c$-Peak: Covariant Recovery on Four Organic Qubit Platforms 2026-04-22 physics.quant-ph;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.00026 False False 2605.00026 The $γ_c$-Peak: Covariant Recovery on Four Organic Qubit Platforms 2026-04-22 physics.quant-ph;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.00026 False False 2605.00026 The $γ_c$-Peak: Covariant Recovery on Four Organic Qubit Platforms 2026-04-22 physics.quant-ph;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.00026 False False 2605.00025 MoDAl: Self-Supervised Neural Modality Discovery via Decorrelation for Speech Neuroprosthesis 2026-04-22 cs.CL;cs.HC;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.00025 False False 2605.00025 MoDAl: Self-Supervised Neural Modality Discovery via Decorrelation for Speech Neuroprosthesis 2026-04-22 cs.CL;cs.HC;cs.LG;eess.AS;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.00025 False False 2605.00025 MoDAl: Self-Supervised Neural Modality Discovery via Decorrelation for Speech Neuroprosthesis 2026-04-22 cs.CL;cs.HC;cs.LG;eess.AS;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.00025 False False 2604.20615 Semi supervised GAN for smart microscopy, fast and data efficient cell cycle classification 2026-04-22 q-bio.QM q-bio.QM https://arxiv.org/abs/2604.20615 False False 2604.20615 Semi supervised GAN for smart microscopy, fast and data efficient cell cycle classification 2026-04-22 q-bio.QM q-bio.QM https://arxiv.org/abs/2604.20615 False False 2604.20782 LAFA: A Framework for Reproducible Longitudinal Assessment of Protein Function Annotation Models 2026-04-22 q-bio.BM;q-bio.QM q-bio.BM https://arxiv.org/abs/2604.20782 False False 2604.20782 LAFA: A Framework for Reproducible Longitudinal Assessment of Protein Function Annotation Models 2026-04-22 q-bio.BM;q-bio.QM q-bio.BM https://arxiv.org/abs/2604.20782 False False 2604.20824 Stabilizing In-Context Multi-Source Domain Adaptation for Biomedical Images Through Controls 2026-04-22 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2604.20824 False False 2604.20824 Stabilizing In-Context Multi-Source Domain Adaptation for Biomedical Images Through Controls 2026-04-22 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2604.20824 False False 2604.20524 Response time of lateral predictive coding and benefits of modular structures 2026-04-22 cs.NE;physics.dis-nn;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.20524 False False 2604.20524 Response time of lateral predictive coding and benefits of modular structures 2026-04-22 cs.NE;physics.dis-nn;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.20524 False False 2605.00865 Leakage-Audited Benchmarking Reveals Limited Evidence for Cross-Subject Auditory-Evoked EEG Vowel Perception Decoding 2026-04-22 cs.CL;cs.CV;cs.LG;cs.SD;eess.SP;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.00865 False False 2605.00865 Leakage-Audited Benchmarking Reveals Limited Evidence for Cross-Subject Auditory-Evoked EEG Vowel Perception Decoding 2026-04-22 cs.CL;cs.CV;cs.LG;cs.SD;eess.SP;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.00865 False False 2605.00025 MoDAl: Self-Supervised Neural Modality Discovery via Decorrelation for Speech Neuroprosthesis 2026-04-22 cs.CL;cs.HC;cs.LG;eess.AS;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.00025 False False 2605.00025 MoDAl: Self-Supervised Neural Modality Discovery via Decorrelation for Speech Neuroprosthesis 2026-04-22 cs.CL;cs.HC;cs.LG;eess.AS;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.00025 False False 2604.19563 Information-to-energy trade-offs and the optimal alphabet of polymer replication 2026-04-21 physics.bio-ph;physics.stat-mech;q-bio.QM q-bio.QM https://arxiv.org/abs/2604.19563 False False 2604.19662 Modelling time-order effects in haptic perception with a Bayesian dynamical framework 2026-04-21 physics.bio-ph;q-bio.NC;stat.AP q-bio.NC https://arxiv.org/abs/2604.19662 False False 2604.19718 Direct RNA sequence design under codon constraints using expressive tensor-based secondary structure models 2026-04-21 q-bio.QM q-bio.QM https://arxiv.org/abs/2604.19718 False False 2604.19840 Graph-Theoretic Models for the Prediction of Molecular Measurements 2026-04-21 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2604.19840 False False 2604.19852 Multi-stage volume exclusion models for cell proliferation 2026-04-21 q-bio.CB q-bio.CB https://arxiv.org/abs/2604.19852 False False 2604.20003 scpFormer: A Foundation Model for Unified Representation and Integration of the Single-Cell Proteomics 2026-04-21 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2604.20003 False False 2604.19840 Graph-Theoretic Models for the Prediction of Molecular Measurements 2026-04-21 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2604.19840 False False 2604.19852 Multi-stage volume exclusion models for cell proliferation 2026-04-21 q-bio.CB q-bio.CB https://arxiv.org/abs/2604.19852 False False 2604.20003 scpFormer: A Foundation Model for Unified Representation and Integration of the Single-Cell Proteomics 2026-04-21 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2604.20003 False False 2605.00024 Self-organized criticality enables conscious integration through brain-body resonance 2026-04-21 eess.SP;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.00024 False False 2605.00024 Self-organized criticality enables conscious integration through brain-body resonance 2026-04-21 eess.SP;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.00024 False False 2605.00857 Foundation Model Guided Dual-Branch Co-Adaptation for Source-Free EEG Decoding 2026-04-21 cs.AI;cs.LG;eess.SP;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.00857 False False 2605.00857 Foundation Model Guided Dual-Branch Co-Adaptation for Source-Free EEG Decoding 2026-04-21 cs.AI;cs.LG;eess.SP;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.00857 False False 2605.00024 Self-organized criticality enables conscious integration through brain-body resonance 2026-04-21 eess.SP;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.00024 False False 2605.00024 Self-organized criticality enables conscious integration through brain-body resonance 2026-04-21 eess.SP;q-bio.NC q-bio.NC https://arxiv.org/abs/2605.00024 False False 2604.17786 Spatial dynamic modelling to understand how dendritic cell clustering affects T cell activation 2026-04-20 q-bio.CB q-bio.CB https://arxiv.org/abs/2604.17786 False False 2604.17926 Information on hidden birth events restores identifiability in phylodynamic inference 2026-04-20 q-bio.PE q-bio.PE https://arxiv.org/abs/2604.17926 False False 2604.17960 The Umwelt Representation Hypothesis: Rethinking Universality 2026-04-20 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.17960 False False 2604.18022 Boltzmann Machine Learning with a Parallel, Persistent Markov chain Monte Carlo method for Estimating Evolutionary Fields and Couplings from a Protein Multiple Sequence Alignment 2026-04-20 cs.LG;physics.stat-mech;q-bio.BM;stat.ML q-bio.BM https://arxiv.org/abs/2604.18022 False False 2604.18031 How Creative Are Large Language Models in Generating Molecules? 2026-04-20 cs.CL;cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2604.18031 False False 2604.18185 Noise-Driven Differentiation via Gene Frustration and Epigenetic Fixation 2026-04-20 physics.bio-ph;q-bio.MN q-bio.MN https://arxiv.org/abs/2604.18185 False False 2604.18230 ToFiE, a Topology-aware Fiber Extraction workflow for 3D reconstruction of dense and heterogeneous biological fiber networks from microscopy images 2026-04-20 physics.mtrl-sci;physics.soft;q-bio.QM q-bio.QM https://arxiv.org/abs/2604.18230 False False 2604.18345 Effect of antibiotic spectrum on the abundance of resistant bacteria in multispecies communities 2026-04-20 q-bio.PE q-bio.PE https://arxiv.org/abs/2604.18345 False False 2604.18470 High-fidelity and Network-based Spatio-temporal Mathematical Models of Alzheimer's Disease Progression and their Validation Against PET-SUVR Imaging Data 2026-04-20 cs.NA;math.NA;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.18470 False False 2604.18521 IDOBE: Infectious Disease Outbreak forecasting Benchmark Ecosystem 2026-04-20 cs.AI;cs.LG;q-bio.PE q-bio.PE https://arxiv.org/abs/2604.18521 False False 2604.18548 Physics-Informed Neural Networks for Biological $2\mathrm{D}{+}t$ Reaction-Diffusion Systems 2026-04-20 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2604.18548 False False 2604.18559 ConforNets: Latents-Based Conformational Control in OpenFold3 2026-04-20 cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2604.18559 False False 2604.18809 Analysis of persistence thresholds for a nonlocal PDE--ODE model of bacterial persister cells 2026-04-20 math.AP;q-bio.PE q-bio.PE https://arxiv.org/abs/2604.18809 False False 2604.18827 OmniMouse: Scaling properties of multi-modal, multi-task Brain Models on 150B Neural Tokens 2026-04-20 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.18827 False False 2604.18851 Intrinsic stochasticity in cell polarity and contact inhibition of locomotion 2026-04-20 physics.bio-ph;q-bio.CB q-bio.CB https://arxiv.org/abs/2604.18851 False False 2604.18872 Meeting times on graphs in near-cubic time 2026-04-20 cs.DS;q-bio.PE q-bio.PE https://arxiv.org/abs/2604.18872 False False 2604.18431 Care Trajectories Are Linked to Mental Health and Mortality in Cancer Patients 2026-04-20 physics.soc-ph;q-bio.QM q-bio.QM https://arxiv.org/abs/2604.18431 False False 2604.18521 IDOBE: Infectious Disease Outbreak forecasting Benchmark Ecosystem 2026-04-20 cs.AI;cs.LG;q-bio.PE q-bio.PE https://arxiv.org/abs/2604.18521 False False 2604.18521 IDOBE: Infectious Disease Outbreak forecasting Benchmark Ecosystem 2026-04-20 cs.AI;cs.LG;q-bio.PE q-bio.PE https://arxiv.org/abs/2604.18521 False False 2604.18809 Analysis of persistence thresholds for a nonlocal PDE--ODE model of bacterial persister cells 2026-04-20 math.AP;q-bio.PE q-bio.PE https://arxiv.org/abs/2604.18809 False False 2604.18809 Analysis of persistence thresholds for a nonlocal PDE--ODE model of bacterial persister cells 2026-04-20 math.AP;q-bio.PE q-bio.PE https://arxiv.org/abs/2604.18809 False False 2604.18827 OmniMouse: Scaling properties of multi-modal, multi-task Brain Models on 150B Neural Tokens 2026-04-20 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.18827 False False 2604.18827 OmniMouse: Scaling properties of multi-modal, multi-task Brain Models on 150B Neural Tokens 2026-04-20 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.18827 False False 2604.18185 Noise-Driven Differentiation via Gene Frustration and Epigenetic Fixation 2026-04-20 physics.bio-ph;q-bio.MN q-bio.MN https://arxiv.org/abs/2604.18185 False False 2604.18185 Noise-Driven Differentiation via Gene Frustration and Epigenetic Fixation 2026-04-20 physics.bio-ph;q-bio.MN q-bio.MN https://arxiv.org/abs/2604.18185 False False 2604.17175 RosettaSearch: Multi-Objective Inference-Time Search for Protein Sequence Design 2026-04-19 cs.AI;cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2604.17175 False False 2604.17291 Poisson Flow Model of Cortical Folding Pattern 2026-04-19 q-bio.NC q-bio.NC https://arxiv.org/abs/2604.17291 False False 2604.17361 3D-DXA Cortical and Trabecular Parameters: Agreement Between Hologic Densitometers in Clinical Practice 2026-04-19 physics.med-ph;q-bio.QM q-bio.QM https://arxiv.org/abs/2604.17361 False False 2604.17581 How Much Data is Enough? The Zeta Law of Discoverability in Biomedical Data, featuring the enigmatic Riemann zeta function 2026-04-19 cs.AI;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.17581 False False 2604.18637 NeuroAI and Beyond: Bridging Between Advances in Neuroscience and ArtificialIntelligence 2026-04-19 cs.AI;cs.CY;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.18637 False False 2604.18643 Quantum-Like Models of Cognition and Decision Making: Open-Systems and Gorini--Kossakowski--Sudarshan--Lindblad Dynamics 2026-04-19 physics.quant-ph;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.18643 False False 2604.17175 RosettaSearch: Multi-Objective Inference-Time Search for Protein Sequence Design 2026-04-19 cs.AI;cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2604.17175 False False 2604.17175 RosettaSearch: Multi-Objective Inference-Time Search for Protein Sequence Design 2026-04-19 cs.AI;cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2604.17175 False False 2604.18637 NeuroAI and Beyond: Bridging Between Advances in Neuroscience and ArtificialIntelligence 2026-04-19 cs.AI;cs.CY;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.18637 False False 2604.18637 NeuroAI and Beyond: Bridging Between Advances in Neuroscience and ArtificialIntelligence 2026-04-19 cs.AI;cs.CY;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.18637 False False 2604.16851 Applications of deep generative models to DNA reaction kinetics and to cryogenic electron microscopy 2026-04-18 cs.AI;cs.CV;cs.LG;q-bio.BM;q-bio.QM q-bio.BM https://arxiv.org/abs/2604.16851 False False 2604.16875 Untrained CNNs Match Backpropagation at V1: A Systematic RSA Comparison of Four Learning Rules Against Human fMRI 2026-04-18 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.16875 False False 2604.16896 ProtoCycle: Reflective Tool-Augmented Planning for Text-Guided Protein Design 2026-04-18 cs.AI;q-bio.QM q-bio.QM https://arxiv.org/abs/2604.16896 False False 2604.17036 Evolution as fitness landscape navigation: Concepts, Measures, and Emerging Questions 2026-04-18 q-bio.PE q-bio.PE https://arxiv.org/abs/2604.17036 False False 2604.17151 Causality as a Minimum Energy Principle 2026-04-18 q-bio.NC q-bio.NC https://arxiv.org/abs/2604.17151 False False 2604.18621 Quantum AI for Cancer Diagnostic Biomarker Discovery 2026-04-18 cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2604.18621 False False 2604.18622 MDAgent: A Multi-Agent Framework for End-to-End Molecular Dynamics Research 2026-04-18 q-bio.QM q-bio.QM https://arxiv.org/abs/2604.18622 False False 2604.18634 Topological analysis of hemodynamic response to cardiac resynchronization therapy 2026-04-18 q-bio.QM q-bio.QM https://arxiv.org/abs/2604.18634 False False 2604.16875 Untrained CNNs Match Backpropagation at V1: A Systematic RSA Comparison of Four Learning Rules Against Human fMRI 2026-04-18 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.16875 False False 2604.16875 Untrained CNNs Match Backpropagation at V1: A Systematic RSA Comparison of Four Learning Rules Against Human fMRI 2026-04-18 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.16875 False False 2604.16851 Applications of deep generative models to DNA reaction kinetics and to cryogenic electron microscopy 2026-04-18 cs.AI;cs.CV;cs.LG;q-bio.BM;q-bio.QM q-bio.BM https://arxiv.org/abs/2604.16851 False False 2604.16851 Applications of deep generative models to DNA reaction kinetics and to cryogenic electron microscopy 2026-04-18 cs.AI;cs.CV;cs.LG;q-bio.BM;q-bio.QM q-bio.BM https://arxiv.org/abs/2604.16851 False False 2604.15598 When do trajectories matter? Identifiability analysis for stochastic transport phenomena 2026-04-17 physics.CG;q-bio.QM;stat.AP q-bio.QM https://arxiv.org/abs/2604.15598 False False 2604.15716 Mathematical modeling of biochemical signal propagation in many-stage enzymatic pathways 2026-04-17 math.DS;q-bio.MN q-bio.MN https://arxiv.org/abs/2604.15716 0.7832 0.8171 True False 2604.15747 Role of chloride concentration in modulating seizure transitions in excitatory and inhibitory networks 2026-04-17 physics.bio-ph;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.15747 False False 2604.16065 Phase transitions in microbial lineage trees 2026-04-17 physics.bio-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2604.16065 False False 2604.16249 Prebiotic Chemistry Insights for Dragonfly II: Thermodynamic Favorability of Nucleobases, Ribose, and Fatty Acids in Selk Crater on Titan 2026-04-17 physics.EP;physics.chem-ph;q-bio.BM q-bio.BM https://arxiv.org/abs/2604.16249 False False 2604.15598 When do trajectories matter? Identifiability analysis for stochastic transport phenomena 2026-04-17 physics.CG;q-bio.QM;stat.AP q-bio.QM https://arxiv.org/abs/2604.15598 False False 2604.15716 Mathematical modeling of biochemical signal propagation in many-stage enzymatic pathways 2026-04-17 math.DS;q-bio.MN q-bio.MN https://arxiv.org/abs/2604.15716 0.7832 0.8171 True False 2604.15747 Role of chloride concentration in modulating seizure transitions in excitatory and inhibitory networks 2026-04-17 physics.bio-ph;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.15747 False False 2604.15598 When do trajectories matter? Identifiability analysis for stochastic transport phenomena 2026-04-17 physics.CG;q-bio.QM;stat.AP q-bio.QM https://arxiv.org/abs/2604.15598 False False 2604.15716 Mathematical modeling of biochemical signal propagation in many-stage enzymatic pathways 2026-04-17 math.DS;q-bio.MN q-bio.MN https://arxiv.org/abs/2604.15716 0.7832 0.8171 True False 2604.15747 Role of chloride concentration in modulating seizure transitions in excitatory and inhibitory networks 2026-04-17 physics.bio-ph;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.15747 False False 2604.16065 Phase transitions in microbial lineage trees 2026-04-17 physics.bio-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2604.16065 False False 2604.16249 Prebiotic Chemistry Insights for Dragonfly II: Thermodynamic Favorability of Nucleobases, Ribose, and Fatty Acids in Selk Crater on Titan 2026-04-17 physics.EP;physics.chem-ph;q-bio.BM q-bio.BM https://arxiv.org/abs/2604.16249 False False 2604.16586 A Systematic Survey and Benchmark of Deep Learning for Molecular Property Prediction in the Foundation Model Era 2026-04-17 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2604.16586 False False 2604.16642 Geometric coherence of single-cell CRISPR perturbations reveals regulatory architecture and predicts cellular stress 2026-04-17 q-bio.CB;q-bio.GN;q-bio.QM;stat.AP q-bio.CB https://arxiv.org/abs/2604.16642 False False 2604.16648 FRIGID: Scaling Diffusion-Based Molecular Generation from Mass Spectra at Training and Inference Time 2026-04-17 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2604.16648 False False 2604.16710 Timescale Limits of Linear-Threshold Networks 2026-04-17 cs.SY;eess.SY;math.DS;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.16710 False False 2604.19850 What Makes a Bacterial Model a Good Reservoir Computer? Predicting Performance from Separability and Similarity 2026-04-17 cs.ET;cs.LG;cs.NE;q-bio.MN;q-bio.QM q-bio.MN https://arxiv.org/abs/2604.19850 False False 2604.19850 What Makes a Bacterial Model a Good Reservoir Computer? Predicting Performance from Separability and Similarity 2026-04-17 cs.ET;cs.LG;cs.NE;q-bio.MN;q-bio.QM q-bio.MN https://arxiv.org/abs/2604.19850 False False 2604.20885 From Physical Difference to Meaning: A Constructor-Theoretic Framework for Prebiotic Information in Casimir-Lifshitz-Coupled Protocell Clusters 2026-04-17 cs.GL;physics.bio-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2604.20885 False False 2604.20885 From Physical Difference to Meaning: A Constructor-Theoretic Framework for Prebiotic Information in Casimir-Lifshitz-Coupled Protocell Clusters 2026-04-17 cs.GL;physics.bio-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2604.20885 False False 2604.16642 Geometric coherence of single-cell CRISPR perturbations reveals regulatory architecture and predicts cellular stress 2026-04-17 q-bio.CB;q-bio.GN;q-bio.QM;stat.AP q-bio.CB https://arxiv.org/abs/2604.16642 False False 2604.16642 Geometric coherence of single-cell CRISPR perturbations reveals regulatory architecture and predicts cellular stress 2026-04-17 q-bio.CB;q-bio.GN;q-bio.QM;stat.AP q-bio.CB https://arxiv.org/abs/2604.16642 False False 2604.15598 When do trajectories matter? Identifiability analysis for stochastic transport phenomena 2026-04-17 physics.CG;q-bio.QM;stat.AP q-bio.QM https://arxiv.org/abs/2604.15598 False False 2604.15598 When do trajectories matter? Identifiability analysis for stochastic transport phenomena 2026-04-17 physics.CG;q-bio.QM;stat.AP q-bio.QM https://arxiv.org/abs/2604.15598 False False 2604.16642 Geometric coherence of single-cell CRISPR perturbations reveals regulatory architecture and predicts cellular stress 2026-04-17 q-bio.CB;q-bio.GN;q-bio.QM;stat.AP q-bio.CB https://arxiv.org/abs/2604.16642 False False 2604.16642 Geometric coherence of single-cell CRISPR perturbations reveals regulatory architecture and predicts cellular stress 2026-04-17 q-bio.CB;q-bio.GN;q-bio.QM;stat.AP q-bio.CB https://arxiv.org/abs/2604.16642 False False 2604.16648 FRIGID: Scaling Diffusion-Based Molecular Generation from Mass Spectra at Training and Inference Time 2026-04-17 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2604.16648 False False 2604.16648 FRIGID: Scaling Diffusion-Based Molecular Generation from Mass Spectra at Training and Inference Time 2026-04-17 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2604.16648 False False 2604.14592 Absolute Concentration Robustness of Non-Redundant Zero-One Networks with Conservation Laws 2026-04-16 q-bio.MN q-bio.MN https://arxiv.org/abs/2604.14592 False False 2604.14694 Robust Evaluation of Neural Encoding Models via ground-truth approximation 2026-04-16 q-bio.NC q-bio.NC https://arxiv.org/abs/2604.14694 False False 2604.14796 PUFFIN: Protein Unit Discovery with Functional Supervision 2026-04-16 cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2604.14796 False False 2604.15245 Goxpyriment: A Go Framework for Behavioral and Cognitive Experiments 2026-04-16 q-bio.NC q-bio.NC https://arxiv.org/abs/2604.15245 False False 2604.15283 Cell-cell adhesion cannot sustain extended follower streams in a minimal non-local model of leader-follower migration 2026-04-16 physics.AO;q-bio.CB q-bio.CB https://arxiv.org/abs/2604.15283 False False 2604.15296 Unity and Diversity of Intracellular pH Maintenance Mechanisms 2026-04-16 q-bio.CB q-bio.CB https://arxiv.org/abs/2604.15296 False False 2604.14592 Absolute Concentration Robustness of Non-Redundant Zero-One Networks with Conservation Laws 2026-04-16 q-bio.MN q-bio.MN https://arxiv.org/abs/2604.14592 False False 2604.14694 Robust Evaluation of Neural Encoding Models via ground-truth approximation 2026-04-16 q-bio.NC q-bio.NC https://arxiv.org/abs/2604.14694 False False 2604.14796 PUFFIN: Protein Unit Discovery with Functional Supervision 2026-04-16 cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2604.14796 False False 2604.15245 Goxpyriment: A Go Framework for Behavioral and Cognitive Experiments 2026-04-16 q-bio.NC q-bio.NC https://arxiv.org/abs/2604.15245 False False 2604.15283 Cell-cell adhesion cannot sustain extended follower streams in a minimal non-local model of leader-follower migration 2026-04-16 physics.AO;q-bio.CB q-bio.CB https://arxiv.org/abs/2604.15283 False False 2604.15296 Unity and Diversity of Intracellular pH Maintenance Mechanisms 2026-04-16 q-bio.CB q-bio.CB https://arxiv.org/abs/2604.15296 False False 2604.15391 Dual-Timescale Memory in a Spiking Neuron-Astrocyte Network for Efficient Navigation 2026-04-16 q-bio.QM q-bio.QM https://arxiv.org/abs/2604.15391 False False 2604.15481 Divergence of detachment forces in the finite Voronoi model 2026-04-16 physics.bio-ph;physics.soft;q-bio.QM q-bio.QM https://arxiv.org/abs/2604.15481 False False 2604.15520 Sparse regression, classification, and microbial network estimation in QIIME2 with q2-classo and q2-gglasso 2026-04-16 q-bio.QM q-bio.QM https://arxiv.org/abs/2604.15520 False False 2604.15527 Universal Loop Statistics from Active Extrusion with Kinetic Barriers 2026-04-16 physics.bio-ph;physics.soft;q-bio.BM q-bio.BM https://arxiv.org/abs/2604.15527 False False 2604.15391 Dual-Timescale Memory in a Spiking Neuron-Astrocyte Network for Efficient Navigation 2026-04-16 q-bio.QM q-bio.QM https://arxiv.org/abs/2604.15391 False False 2604.15481 Divergence of detachment forces in the finite Voronoi model 2026-04-16 physics.bio-ph;physics.soft;q-bio.QM q-bio.QM https://arxiv.org/abs/2604.15481 False False 2604.15520 Sparse regression, classification, and microbial network estimation in QIIME2 with q2-classo and q2-gglasso 2026-04-16 q-bio.QM q-bio.QM https://arxiv.org/abs/2604.15520 False False 2604.15527 Universal Loop Statistics from Active Extrusion with Kinetic Barriers 2026-04-16 physics.bio-ph;physics.soft;q-bio.BM q-bio.BM https://arxiv.org/abs/2604.15527 False False 2604.15391 Dual-Timescale Memory in a Spiking Neuron-Astrocyte Network for Efficient Navigation 2026-04-16 q-bio.QM q-bio.QM https://arxiv.org/abs/2604.15391 False False 2604.15481 Divergence of detachment forces in the finite Voronoi model 2026-04-16 physics.bio-ph;physics.soft;q-bio.QM q-bio.QM https://arxiv.org/abs/2604.15481 False False 2604.15520 Sparse regression, classification, and microbial network estimation in QIIME2 with q2-classo and q2-gglasso 2026-04-16 q-bio.QM q-bio.QM https://arxiv.org/abs/2604.15520 False False 2604.15527 Universal Loop Statistics from Active Extrusion with Kinetic Barriers 2026-04-16 physics.bio-ph;physics.soft;q-bio.BM q-bio.BM https://arxiv.org/abs/2604.15527 False False 2604.14592 Absolute Concentration Robustness of Non-Redundant Zero-One Networks with Conservation Laws 2026-04-16 q-bio.MN q-bio.MN https://arxiv.org/abs/2604.14592 False False 2604.14592 Absolute Concentration Robustness of Non-Redundant Zero-One Networks with Conservation Laws 2026-04-16 q-bio.MN q-bio.MN https://arxiv.org/abs/2604.14592 False False 2604.24773 Simultaneous Fragment Docking for Geometrically Linkable Pose Pairs 2026-04-16 physics.quant-ph;q-bio.BM q-bio.BM https://arxiv.org/abs/2604.24773 False False 2604.24773 Simultaneous Fragment Docking for Geometrically Linkable Pose Pairs 2026-04-16 physics.quant-ph;q-bio.BM q-bio.BM https://arxiv.org/abs/2604.24773 False False 2605.05213 Nationwide EHR-Based Chronic Rhinosinusitis Prediction Using Demographic-Stratified Models 2026-04-16 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.05213 False False 2605.05213 Nationwide EHR-Based Chronic Rhinosinusitis Prediction Using Demographic-Stratified Models 2026-04-16 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.05213 False False 2604.14592 Absolute Concentration Robustness of Non-Redundant Zero-One Networks with Conservation Laws 2026-04-16 q-bio.MN q-bio.MN https://arxiv.org/abs/2604.14592 False False 2604.14592 Absolute Concentration Robustness of Non-Redundant Zero-One Networks with Conservation Laws 2026-04-16 q-bio.MN q-bio.MN https://arxiv.org/abs/2604.14592 False False 2604.14592 Obstruction of Absolute Concentration Robustness by Conservation Laws in Non-Redundant Zero-One Networks 2026-04-16 q-bio.MN q-bio.MN https://arxiv.org/abs/2604.14592 False False 2604.14592 Obstruction of Absolute Concentration Robustness by Conservation Laws in Non-Redundant Zero-One Networks 2026-04-16 q-bio.MN q-bio.MN https://arxiv.org/abs/2604.14592 False False 2604.15481 Divergence of detachment forces in the finite Voronoi model 2026-04-16 physics.bio-ph;physics.soft;q-bio.QM q-bio.QM https://arxiv.org/abs/2604.15481 False False 2604.15481 Divergence of detachment forces in the finite Voronoi model 2026-04-16 physics.bio-ph;physics.soft;q-bio.QM q-bio.QM https://arxiv.org/abs/2604.15481 False False 2604.13574 From Brain Models to Executable Digital Twins: Execution Semantics and Neuro-Neuromorphic Systems 2026-04-15 cs.CE;cs.NE;cs.SE;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.13574 False False 2604.13719 Modeling of Self-sustained Neuron Population without External Stimulus 2026-04-15 cs.NE;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.13719 False False 2604.13963 A generative model for bipartite gene-sharing networks 2026-04-15 physics.bio-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2604.13963 False False 2604.13980 BOAT: Navigating the Sea of In Silico Predictors for Antibody Design via Multi-Objective Bayesian Optimization 2026-04-15 cs.LG;q-bio.QM;stat.ML q-bio.QM https://arxiv.org/abs/2604.13980 False False 2604.14096 Working Memory in a Recurrent Spiking Neural Networks With Heterogeneous Synaptic Delays 2026-04-15 q-bio.NC q-bio.NC https://arxiv.org/abs/2604.14096 False False 2604.13574 From Brain Models to Executable Digital Twins: Execution Semantics and Neuro-Neuromorphic Systems 2026-04-15 cs.CE;cs.NE;cs.SE;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.13574 False False 2604.13719 Modeling of Self-sustained Neuron Population without External Stimulus 2026-04-15 cs.NE;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.13719 False False 2604.13963 A generative model for bipartite gene-sharing networks 2026-04-15 physics.bio-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2604.13963 False False 2604.13980 BOAT: Navigating the Sea of In Silico Predictors for Antibody Design via Multi-Objective Bayesian Optimization 2026-04-15 cs.LG;q-bio.QM;stat.ML q-bio.QM https://arxiv.org/abs/2604.13980 False False 2604.14096 Working Memory in a Recurrent Spiking Neural Networks With Heterogeneous Synaptic Delays 2026-04-15 q-bio.NC q-bio.NC https://arxiv.org/abs/2604.14096 False False 2604.14241 Polyformer: a generative framework for thermodynamic modeling of polymeric molecules 2026-04-15 cs.LG;physics.stat-mech;q-bio.BM;q-bio.QM q-bio.BM https://arxiv.org/abs/2604.14241 False False 2604.14259 Continual Learning for fMRI-Based Brain Disorder Diagnosis via Functional Connectivity Matrices Generative Replay 2026-04-15 cs.LG;eess.IV;q-bio.TO q-bio.TO https://arxiv.org/abs/2604.14259 False False 2604.14263 A deep learning framework for glomeruli segmentation with boundary attention 2026-04-15 cs.CV;cs.LG;q-bio.TO q-bio.TO https://arxiv.org/abs/2604.14263 False False 2604.14305 Combining Bayesian and Frequentist Inference for Laboratory-Specific Performance Guarantees in Copy Number Variation Detection 2026-04-15 cs.LG;q-bio.GN;stat.AP;stat.ME q-bio.GN https://arxiv.org/abs/2604.14305 False False 2604.14334 Mamba-SSM with LLM Reasoning for Biomarker Discovery: Causal Feature Refinement via Chain-of-Thought Gene Evaluation 2026-04-15 cs.AI;q-bio.QM q-bio.QM https://arxiv.org/abs/2604.14334 False False 2604.14483 Synchronized disease and behavioural dynamics in weakly coupled populations 2026-04-15 q-bio.PE q-bio.PE https://arxiv.org/abs/2604.14483 False False 2604.14241 Polyformer: a generative framework for thermodynamic modeling of polymeric molecules 2026-04-15 cs.LG;physics.stat-mech;q-bio.BM;q-bio.QM q-bio.BM https://arxiv.org/abs/2604.14241 False False 2604.14259 Continual Learning for fMRI-Based Brain Disorder Diagnosis via Functional Connectivity Matrices Generative Replay 2026-04-15 cs.LG;eess.IV;q-bio.TO q-bio.TO https://arxiv.org/abs/2604.14259 False False 2604.14263 A deep learning framework for glomeruli segmentation with boundary attention 2026-04-15 cs.CV;cs.LG;q-bio.TO q-bio.TO https://arxiv.org/abs/2604.14263 False False 2604.14305 Combining Bayesian and Frequentist Inference for Laboratory-Specific Performance Guarantees in Copy Number Variation Detection 2026-04-15 cs.LG;q-bio.GN;stat.AP;stat.ME q-bio.GN https://arxiv.org/abs/2604.14305 False False 2604.14334 Mamba-SSM with LLM Reasoning for Biomarker Discovery: Causal Feature Refinement via Chain-of-Thought Gene Evaluation 2026-04-15 cs.AI;q-bio.QM q-bio.QM https://arxiv.org/abs/2604.14334 False False 2604.14483 Synchronized disease and behavioural dynamics in weakly coupled populations 2026-04-15 q-bio.PE q-bio.PE https://arxiv.org/abs/2604.14483 False False 2604.14334 Mamba-SSM with LLM Reasoning for Feature Selection: Faithfulness-Aware Biomarker Discovery 2026-04-15 cs.AI;q-bio.QM q-bio.QM https://arxiv.org/abs/2604.14334 False False 2604.15374 Seeing the imagined: a latent functional alignment in visual imagery decoding from fMRI data 2026-04-15 cs.AI;eess.IV;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.15374 False False 2604.14334 Mamba-SSM with LLM Reasoning for Feature Selection: Faithfulness-Aware Biomarker Discovery 2026-04-15 cs.AI;q-bio.QM q-bio.QM https://arxiv.org/abs/2604.14334 False False 2604.15374 Seeing the imagined: a latent functional alignment in visual imagery decoding from fMRI data 2026-04-15 cs.AI;eess.IV;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.15374 False False 2604.14334 Mamba-SSM with LLM Reasoning for Feature Selection: Faithfulness-Aware Biomarker Discovery 2026-04-15 cs.AI;q-bio.QM q-bio.QM https://arxiv.org/abs/2604.14334 False False 2604.15374 Seeing the imagined: a latent functional alignment in visual imagery decoding from fMRI data 2026-04-15 cs.AI;eess.IV;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.15374 False False 2604.24772 Neuronal electricality founded in murburn-thermodynamic principles: 1. Background and basic theoretical formulation 2026-04-15 q-bio.NC;q-bio.SC q-bio.NC https://arxiv.org/abs/2604.24772 False False 2604.24772 Neuronal electricality founded in murburn-thermodynamic principles: 1. Background and basic theoretical formulation 2026-04-15 q-bio.NC;q-bio.SC q-bio.NC https://arxiv.org/abs/2604.24772 False False 2605.00014 Neuronal electricality founded in murburn-thermodynamic principles: 2. Comparisons, evidenced explanations, and predictions 2026-04-15 q-bio.NC;q-bio.SC q-bio.NC https://arxiv.org/abs/2605.00014 False False 2605.00014 Neuronal electricality founded in murburn-thermodynamic principles: 2. Comparisons, evidenced explanations, and predictions 2026-04-15 q-bio.NC;q-bio.SC q-bio.NC https://arxiv.org/abs/2605.00014 False False 2604.14241 Polyformer: a generative framework for thermodynamic modeling of polymeric molecules 2026-04-15 cs.LG;physics.stat-mech;q-bio.BM;q-bio.QM q-bio.BM https://arxiv.org/abs/2604.14241 False False 2604.14241 Polyformer: a generative framework for thermodynamic modeling of polymeric molecules 2026-04-15 cs.LG;physics.stat-mech;q-bio.BM;q-bio.QM q-bio.BM https://arxiv.org/abs/2604.14241 False False 2604.24772 Neuronal electricality founded in murburn-thermodynamic principles: 1. Background and basic theoretical formulation 2026-04-15 q-bio.NC;q-bio.SC q-bio.NC https://arxiv.org/abs/2604.24772 False False 2605.00014 Neuronal electricality founded in murburn-thermodynamic principles: 2. Comparisons, evidenced explanations, and predictions 2026-04-15 q-bio.NC;q-bio.SC q-bio.NC https://arxiv.org/abs/2605.00014 False False 2604.24772 Neuronal electricality founded in murburn-thermodynamic principles: 1. Background and basic theoretical formulation 2026-04-15 q-bio.NC;q-bio.SC q-bio.NC https://arxiv.org/abs/2604.24772 False False 2605.00014 Neuronal electricality founded in murburn-thermodynamic principles: 2. Comparisons, evidenced explanations, and predictions 2026-04-15 q-bio.NC;q-bio.SC q-bio.NC https://arxiv.org/abs/2605.00014 False False 2604.14096 Working Memory in a Recurrent Spiking Neural Networks With Heterogeneous Synaptic Delays 2026-04-15 q-bio.NC q-bio.NC https://arxiv.org/abs/2604.14096 False False 2604.14096 Working Memory in a Recurrent Spiking Neural Networks With Heterogeneous Synaptic Delays 2026-04-15 q-bio.NC q-bio.NC https://arxiv.org/abs/2604.14096 False False 2604.12164 Phylogenetic Inference under the Balanced Minimum Evolution Criterion via Semidefinite Programming 2026-04-14 cs.DS;math.OC;q-bio.PE q-bio.PE https://arxiv.org/abs/2604.12164 False False 2604.12294 The IQ-Motion Confound in Multi-Site Autism fMRI May Be Inflated by Site-Correlated Measurement Uncertainty 2026-04-14 q-bio.QM;stat.AP q-bio.QM https://arxiv.org/abs/2604.12294 False False 2604.12387 oxo-call: Documentation-grounded Skill Augmentation for Accurate Bioinformatics Command-line Generation with Large Language Models 2026-04-14 q-bio.GN q-bio.GN https://arxiv.org/abs/2604.12387 False False 2604.12546 Predicting success of cooperators across arbitrary heterogeneous environmental landscapes 2026-04-14 physics.soc-ph;physics.stat-mech;q-bio.PE q-bio.PE https://arxiv.org/abs/2604.12546 False False 2604.12671 Differentiating Physical and Psychological Stress Using Wearable Physiological Signals and Salivary Cortisol 2026-04-14 eess.SP;q-bio.QM q-bio.QM https://arxiv.org/abs/2604.12671 False False 2604.12683 Brain-DiT: A Universal Multi-state fMRI Foundation Model with Metadata-Conditioned Pretraining 2026-04-14 cs.CV;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.12683 False False 2604.12825 The illusory simplicity of the feedforward pass: evidence for the dynamical nature of stimulus encoding along the primate ventral stream 2026-04-14 q-bio.NC q-bio.NC https://arxiv.org/abs/2604.12825 False False 2604.12884 An abstract model of nonrandom, non-Lamarckian mutation in evolution using a multivariate estimation-of-distribution algorithm 2026-04-14 cs.NE;q-bio.PE q-bio.PE https://arxiv.org/abs/2604.12884 False False 2604.12930 Building and maintaining a System of Intracellular Compartments 2026-04-14 physics.AO;physics.bio-ph;physics.soft;q-bio.SC q-bio.SC https://arxiv.org/abs/2604.12930 False False 2604.12164 Phylogenetic Inference under the Balanced Minimum Evolution Criterion via Semidefinite Programming 2026-04-14 cs.DS;math.OC;q-bio.PE q-bio.PE https://arxiv.org/abs/2604.12164 False False 2604.12294 The IQ-Motion Confound in Multi-Site Autism fMRI May Be Inflated by Site-Correlated Measurement Uncertainty 2026-04-14 q-bio.QM;stat.AP q-bio.QM https://arxiv.org/abs/2604.12294 False False 2604.12387 oxo-call: Documentation-grounded Skill Augmentation for Accurate Bioinformatics Command-line Generation with Large Language Models 2026-04-14 q-bio.GN q-bio.GN https://arxiv.org/abs/2604.12387 False False 2604.12546 Predicting success of cooperators across arbitrary heterogeneous environmental landscapes 2026-04-14 physics.soc-ph;physics.stat-mech;q-bio.PE q-bio.PE https://arxiv.org/abs/2604.12546 False False 2604.12671 Differentiating Physical and Psychological Stress Using Wearable Physiological Signals and Salivary Cortisol 2026-04-14 eess.SP;q-bio.QM q-bio.QM https://arxiv.org/abs/2604.12671 False False 2604.12683 Brain-DiT: A Universal Multi-state fMRI Foundation Model with Metadata-Conditioned Pretraining 2026-04-14 cs.CV;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.12683 False False 2604.12825 The illusory simplicity of the feedforward pass: evidence for the dynamical nature of stimulus encoding along the primate ventral stream 2026-04-14 q-bio.NC q-bio.NC https://arxiv.org/abs/2604.12825 False False 2604.12884 An abstract model of nonrandom, non-Lamarckian mutation in evolution using a multivariate estimation-of-distribution algorithm 2026-04-14 cs.NE;q-bio.PE q-bio.PE https://arxiv.org/abs/2604.12884 False False 2604.12930 Building and maintaining a System of Intracellular Compartments 2026-04-14 physics.AO;physics.bio-ph;physics.soft;q-bio.SC q-bio.SC https://arxiv.org/abs/2604.12930 False False 2604.13175 Pareto-Optimal Offline Reinforcement Learning via Smooth Tchebysheff Scalarization 2026-04-14 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2604.13175 False False 2604.13281 Attention to task structure for cognitive flexibility 2026-04-14 cs.NE;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.13281 False False 2604.13344 What good is modeling? Introducing biology students to theory 2026-04-14 physics.ed-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2604.13344 False False 2604.13281 Attention to task structure for cognitive flexibility 2026-04-14 cs.NE;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.13281 False False 2604.13344 What good is modeling? Introducing biology students to theory 2026-04-14 physics.ed-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2604.13344 False False 2604.13175 Pareto-Optimal Offline Reinforcement Learning via Smooth Tchebysheff Scalarization 2026-04-14 cs.AI;cs.LG;q-bio.BM;q-bio.QM q-bio.BM https://arxiv.org/abs/2604.13175 False False 2604.13175 Pareto-Optimal Offline Reinforcement Learning via Smooth Tchebysheff Scalarization 2026-04-14 cs.AI;cs.LG;q-bio.BM;q-bio.QM q-bio.BM https://arxiv.org/abs/2604.13175 False False 2604.12671 Differentiating Physical and Psychological Stress Using Wearable Physiological Signals and Salivary Cortisol 2026-04-14 eess.SP;q-bio.QM q-bio.QM https://arxiv.org/abs/2604.12671 False False 2604.12671 Differentiating Physical and Psychological Stress Using Wearable Physiological Signals and Salivary Cortisol 2026-04-14 eess.SP;q-bio.QM q-bio.QM https://arxiv.org/abs/2604.12671 False False 2604.12930 Building and maintaining a System of Intracellular Compartments 2026-04-14 physics.AO;physics.bio-ph;physics.soft;q-bio.SC q-bio.SC https://arxiv.org/abs/2604.12930 False False 2604.12930 Building and maintaining a System of Intracellular Compartments 2026-04-14 physics.AO;physics.bio-ph;physics.soft;q-bio.SC q-bio.SC https://arxiv.org/abs/2604.12930 False False 2606.03995 Early Detection of Alzheimer's Disease Using Explainable Machine Learning on Clinical Biomarkers: A Multi-Class Classification Study Using the Alzheimer's Disease Neuroimaging Initiative (ADNI) Dataset 2026-04-14 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.03995 False False 2606.03995 Early Detection of Alzheimer's Disease Using Explainable Machine Learning on Clinical Biomarkers: A Multi-Class Classification Study Using the Alzheimer's Disease Neuroimaging Initiative (ADNI) Dataset 2026-04-14 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2606.03995 False False 2604.12683 Brain-DiT: A Universal Multi-state fMRI Foundation Model with Metadata-Conditioned Pretraining 2026-04-14 cs.CV;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.12683 False False 2604.12683 Brain-DiT: A Universal Multi-state fMRI Foundation Model with Metadata-Conditioned Pretraining 2026-04-14 cs.CV;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.12683 False False 2604.12825 The illusory simplicity of the feedforward pass: evidence for the dynamical nature of stimulus encoding along the primate ventral stream 2026-04-14 q-bio.NC q-bio.NC https://arxiv.org/abs/2604.12825 False False 2604.12825 The illusory simplicity of the feedforward pass: evidence for the dynamical nature of stimulus encoding along the primate ventral stream 2026-04-14 q-bio.NC q-bio.NC https://arxiv.org/abs/2604.12825 False False 2604.10957 A molecular clock for writing systems reveals the quantitative impact of imperial power on cultural evolution 2026-04-13 cs.AI;cs.CL;cs.CY;q-bio.PE q-bio.PE https://arxiv.org/abs/2604.10957 False False 2604.10995 How complex behavioural contagion can prevent infectious diseases from becoming endemic 2026-04-13 q-bio.PE q-bio.PE https://arxiv.org/abs/2604.10995 False False 2604.11178 Probabilistic Prediction of Neural Dynamics via Autoregressive Flow Matching 2026-04-13 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.11178 False False 2604.11208 The Neurobiological Craving Signature (NCS) predicts social craving and responds to social isolation 2026-04-13 q-bio.NC q-bio.NC https://arxiv.org/abs/2604.11208 False False 2604.11354 Strategy evolution on networks under payoff uncertainty and risk preference 2026-04-13 physics.soc-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2604.11354 False False 2604.11451 Neutralization titers reveal the structure of polyclonal antibody responses 2026-04-13 q-bio.PE q-bio.PE https://arxiv.org/abs/2604.11451 False False 2604.11482 Integrated information theory: the good, the bad and the misunderstood 2026-04-13 q-bio.NC q-bio.NC https://arxiv.org/abs/2604.11482 False False 2604.11483 CAGenMol: Condition-Aware Diffusion Language Model for Goal-Directed Molecular Generation 2026-04-13 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2604.11483 False False 2604.11555 Will a Large Complex System be Stable? Revisited 2026-04-13 q-bio.PE q-bio.PE https://arxiv.org/abs/2604.11555 False False 2604.11696 The origin of the genetic code is encrypted in the structure of present-day transfer RNAs 2026-04-13 q-bio.PE q-bio.PE https://arxiv.org/abs/2604.11696 False False 2604.10957 A molecular clock for writing systems reveals the quantitative impact of imperial power on cultural evolution 2026-04-13 cs.AI;cs.CL;cs.CY;q-bio.PE q-bio.PE https://arxiv.org/abs/2604.10957 False False 2604.10995 How complex behavioural contagion can prevent infectious diseases from becoming endemic 2026-04-13 q-bio.PE q-bio.PE https://arxiv.org/abs/2604.10995 False False 2604.11178 Probabilistic Prediction of Neural Dynamics via Autoregressive Flow Matching 2026-04-13 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.11178 False False 2604.11208 The Neurobiological Craving Signature (NCS) predicts social craving and responds to social isolation 2026-04-13 q-bio.NC q-bio.NC https://arxiv.org/abs/2604.11208 False False 2604.11354 Strategy evolution on networks under payoff uncertainty and risk preference 2026-04-13 physics.soc-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2604.11354 False False 2604.11451 Neutralization titers reveal the structure of polyclonal antibody responses 2026-04-13 q-bio.PE q-bio.PE https://arxiv.org/abs/2604.11451 False False 2604.11482 Integrated information theory: the good, the bad and the misunderstood 2026-04-13 q-bio.NC q-bio.NC https://arxiv.org/abs/2604.11482 False False 2604.11483 CAGenMol: Condition-Aware Diffusion Language Model for Goal-Directed Molecular Generation 2026-04-13 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2604.11483 False False 2604.11555 Will a Large Complex System be Stable? Revisited 2026-04-13 q-bio.PE q-bio.PE https://arxiv.org/abs/2604.11555 False False 2604.11696 The origin of the genetic code is encrypted in the structure of present-day transfer RNAs 2026-04-13 q-bio.PE q-bio.PE https://arxiv.org/abs/2604.11696 False False 2604.11852 Evaluating the Limitations of Protein Sequence Representations for Parkinson's Disease Classification 2026-04-13 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2604.11852 False False 2604.11915 Can AI Detect Life? Lessons from Artificial Life 2026-04-13 cs.AI;cs.LG;cs.NE;q-bio.PE q-bio.PE https://arxiv.org/abs/2604.11915 False False 2604.11944 A unified data format for managing diabetes time-series data: DIAbetes eXchange (DIAX) 2026-04-13 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2604.11944 False False 2604.12004 Fixation probabilities for multi-allele Moran dynamics with weak selection 2026-04-13 physics.stat-mech;q-bio.PE q-bio.PE https://arxiv.org/abs/2604.12004 False False 2604.12026 TriFit: Trimodal Fusion with Protein Dynamics for Mutation Fitness Prediction 2026-04-13 cs.LG;q-bio.BM;q-bio.QM q-bio.BM https://arxiv.org/abs/2604.12026 False False 2604.12060 Interpretable DNA Sequence Classification via Dynamic Feature Generation in Decision Trees 2026-04-13 cs.AI;cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2604.12060 False False 2604.12075 OpenTME: An Open Dataset of AI-powered H&E Tumor Microenvironment Profiles from TCGA 2026-04-13 cs.AI;cs.CV;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2604.12075 False False 2604.11852 Evaluating the Limitations of Protein Sequence Representations for Parkinson's Disease Classification 2026-04-13 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2604.11852 False False 2604.11915 Can AI Detect Life? Lessons from Artificial Life 2026-04-13 cs.AI;cs.LG;cs.NE;q-bio.PE q-bio.PE https://arxiv.org/abs/2604.11915 False False 2604.11944 A unified data format for managing diabetes time-series data: DIAbetes eXchange (DIAX) 2026-04-13 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2604.11944 False False 2604.12004 Fixation probabilities for multi-allele Moran dynamics with weak selection 2026-04-13 physics.stat-mech;q-bio.PE q-bio.PE https://arxiv.org/abs/2604.12004 False False 2604.12026 TriFit: Trimodal Fusion with Protein Dynamics for Mutation Fitness Prediction 2026-04-13 cs.LG;q-bio.BM;q-bio.QM q-bio.BM https://arxiv.org/abs/2604.12026 False False 2604.12060 Interpretable DNA Sequence Classification via Dynamic Feature Generation in Decision Trees 2026-04-13 cs.AI;cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2604.12060 False False 2604.12075 OpenTME: An Open Dataset of AI-powered H&E Tumor Microenvironment Profiles from TCGA 2026-04-13 cs.AI;cs.CV;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2604.12075 False False 2604.15363 Machine learning approaches to uncover the neural mechanisms of motivated behaviour: from ADHD to individual differences in effort and reward sensitivity 2026-04-13 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.15363 False False 2604.15363 Machine learning approaches to uncover the neural mechanisms of motivated behaviour: from ADHD to individual differences in effort and reward sensitivity 2026-04-13 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.15363 False False 2604.15363 Machine learning approaches to uncover the neural mechanisms of motivated behaviour: from ADHD to individual differences in effort and reward sensitivity 2026-04-13 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.15363 False False 2604.19805 Modeling of Pneumococcal and Respiratory Syncytial Virus Pneumonia: An Epidemiological Review, with Statistical Inference 2026-04-13 q-bio.PE q-bio.PE https://arxiv.org/abs/2604.19805 False False 2604.19805 Modeling of Pneumococcal and Respiratory Syncytial Virus Pneumonia: An Epidemiological Review, with Statistical Inference 2026-04-13 q-bio.PE q-bio.PE https://arxiv.org/abs/2604.19805 False False 2604.22796 Relationship between the level of mental fatigue induced by a prolonged cognitive task and the degree of balance disturbance 2026-04-13 q-bio.NC q-bio.NC https://arxiv.org/abs/2604.22796 False False 2604.22800 RCSB PDB AI Help Desk: retrieval-augmented generation for protein structure deposition support 2026-04-13 cs.AI;cs.CL;cs.IR;q-bio.QM q-bio.QM https://arxiv.org/abs/2604.22800 False False 2604.22796 Relationship between the level of mental fatigue induced by a prolonged cognitive task and the degree of balance disturbance 2026-04-13 q-bio.NC q-bio.NC https://arxiv.org/abs/2604.22796 False False 2604.22800 RCSB PDB AI Help Desk: retrieval-augmented generation for protein structure deposition support 2026-04-13 cs.AI;cs.CL;cs.IR;q-bio.QM q-bio.QM https://arxiv.org/abs/2604.22800 False False 2605.04071 FlatASCEND: Autoregressive Clinical Sequence Generation with Continuous Time Prediction and Association-Based Pharmacological Testing 2026-04-13 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.04071 False False 2605.04071 FlatASCEND: Autoregressive Clinical Sequence Generation with Continuous Time Prediction and Association-Based Pharmacological Testing 2026-04-13 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2605.04071 False False 2604.11852 Limitations of Sequence-Based Protein Representations for Parkinson's Disease Classification: A Leakage-Free Benchmark 2026-04-13 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2604.11852 False False 2604.11852 Limitations of Sequence-Based Protein Representations for Parkinson's Disease Classification: A Leakage-Free Benchmark 2026-04-13 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2604.11852 False False 2604.11915 Can AI Detect Life? Lessons from Artificial Life 2026-04-13 cs.AI;cs.LG;cs.NE;q-bio.PE q-bio.PE https://arxiv.org/abs/2604.11915 False False 2604.11915 Can AI Detect Life? Lessons from Artificial Life 2026-04-13 cs.AI;cs.LG;cs.NE;q-bio.PE q-bio.PE https://arxiv.org/abs/2604.11915 False False 2604.11451 Neutralization titers reveal the structure of polyclonal antibody responses 2026-04-13 q-bio.PE q-bio.PE https://arxiv.org/abs/2604.11451 False False 2604.11451 Neutralization titers reveal the structure of polyclonal antibody responses 2026-04-13 q-bio.PE q-bio.PE https://arxiv.org/abs/2604.11451 False False 2604.10476 The Dynamic Origin of Kleiber's Law 2026-04-12 physics.bio-ph;q-bio.QM;q-bio.TO q-bio.QM https://arxiv.org/abs/2604.10476 False False 2604.10571 Universal statistical signatures of evolution in artificial intelligence architectures 2026-04-12 cs.AI;cs.CY;cs.NE;q-bio.PE q-bio.PE https://arxiv.org/abs/2604.10571 False False 2604.10606 Relaxing in Warped Spaces: Generalized Hierarchical and Modular Dynamical Neural Network 2026-04-12 q-bio.NC q-bio.NC https://arxiv.org/abs/2604.10606 False False 2604.10609 Self-supervised Pretraining of Cell Segmentation Models 2026-04-12 cs.CV;q-bio.QM q-bio.QM https://arxiv.org/abs/2604.10609 False False 2604.10614 Kinetic models of opinion-driven epidemic dynamics modulated by graphons 2026-04-12 math.AP;physics.soc-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2604.10614 False False 2604.10476 The Dynamic Origin of Kleiber's Law 2026-04-12 physics.bio-ph;q-bio.QM;q-bio.TO q-bio.QM https://arxiv.org/abs/2604.10476 False False 2604.10571 Universal statistical signatures of evolution in artificial intelligence architectures 2026-04-12 cs.AI;cs.CY;cs.NE;q-bio.PE q-bio.PE https://arxiv.org/abs/2604.10571 False False 2604.10606 Relaxing in Warped Spaces: Generalized Hierarchical and Modular Dynamical Neural Network 2026-04-12 q-bio.NC q-bio.NC https://arxiv.org/abs/2604.10606 False False 2604.10609 Self-supervised Pretraining of Cell Segmentation Models 2026-04-12 cs.CV;q-bio.QM q-bio.QM https://arxiv.org/abs/2604.10609 False False 2604.10614 Kinetic models of opinion-driven epidemic dynamics modulated by graphons 2026-04-12 math.AP;physics.soc-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2604.10614 False False 2604.10614 Kinetic models of opinion-driven epidemic dynamics modulated by graphons 2026-04-12 math.AP;physics.soc-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2604.10614 False False 2604.10614 Kinetic models of opinion-driven epidemic dynamics modulated by graphons 2026-04-12 math.AP;physics.soc-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2604.10614 False False 2604.09966 Fragmentation is a diversity ratchet 2026-04-11 physics.AO;q-bio.PE q-bio.PE https://arxiv.org/abs/2604.09966 False False 2604.10036 Astrocytic resource diffusion stabilizes persistent activity in neural fields 2026-04-11 physics.PS;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.10036 False False 2604.09966 Fragmentation is a diversity ratchet 2026-04-11 physics.AO;q-bio.PE q-bio.PE https://arxiv.org/abs/2604.09966 False False 2604.10036 Astrocytic resource diffusion stabilizes persistent activity in neural fields 2026-04-11 physics.PS;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.10036 False False 2604.11824 Patterns in Individual Blood Count Trajectories in the UK Biobank Characterise Disease-Specific Signatures and Anticipate Pan-Cancer Risk 2026-04-11 q-bio.QM q-bio.QM https://arxiv.org/abs/2604.11824 False False 2604.11824 Patterns in Individual Blood Count Trajectories in the UK Biobank Characterise Disease-Specific Signatures and Anticipate Pan-Cancer Risk 2026-04-11 q-bio.QM q-bio.QM https://arxiv.org/abs/2604.11824 False False 2604.11824 Patterns in Individual Blood Count Trajectories in the UK Biobank Characterise Disease-Specific Signatures and Anticipate Pan-Cancer Risk 2026-04-11 q-bio.QM q-bio.QM https://arxiv.org/abs/2604.11824 False False 2605.20208 Artificial Pancreas Implantables -- How Healthcare Professionals May Deal With DIY Bio Cases 2026-04-11 cs.CR;cs.CY;q-bio.TO q-bio.TO https://arxiv.org/abs/2605.20208 False False 2605.20208 Artificial Pancreas Implantables -- How Healthcare Professionals May Deal With DIY Bio Cases 2026-04-11 cs.CR;cs.CY;q-bio.TO q-bio.TO https://arxiv.org/abs/2605.20208 False False 2604.09229 The Fast Lane Hypothesis: Von Economo Neurons Implement a Biological Speed-Accuracy Tradeoff 2026-04-10 cs.AI;cs.NE;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.09229 False False 2604.09369 Biologically-Grounded Multi-Encoder Architectures as Developability Oracles for Antibody Design 2026-04-10 cs.LG;q-bio.BM;q-bio.QM q-bio.BM https://arxiv.org/abs/2604.09369 False False 2604.09370 Cluster-First Labelling: An Automated Pipeline for Segmentation and Morphological Clustering in Histology Whole Slide Images 2026-04-10 cs.CV;q-bio.QM q-bio.QM https://arxiv.org/abs/2604.09370 False False 2604.09403 Efficient Shapley values computation for Boolean network models of gene regulation 2026-04-10 q-bio.MN q-bio.MN https://arxiv.org/abs/2604.09403 0.7673 0.7485 True 6 6.6 False 2604.09451 An Open-Source, Open Data Approach to Activity Classification from Triaxial Accelerometry in an Ambulatory Setting 2026-04-10 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2604.09451 False False 2604.09509 An Improved Bipartition Cover Bound for the Multispecies Coalescent Model 2026-04-10 math.PR;q-bio.PE q-bio.PE https://arxiv.org/abs/2604.09509 False False 2604.09540 A Physically-Informed Subgraph Isomorphism Approach to Molecular Docking Using Quantum Annealers 2026-04-10 cs.ET;q-bio.BM q-bio.BM https://arxiv.org/abs/2604.09540 False False 2604.09229 The Fast Lane Hypothesis: Von Economo Neurons Implement a Biological Speed-Accuracy Tradeoff 2026-04-10 cs.AI;cs.NE;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.09229 False False 2604.09369 Biologically-Grounded Multi-Encoder Architectures as Developability Oracles for Antibody Design 2026-04-10 cs.LG;q-bio.BM;q-bio.QM q-bio.BM https://arxiv.org/abs/2604.09369 False False 2604.09370 Cluster-First Labelling: An Automated Pipeline for Segmentation and Morphological Clustering in Histology Whole Slide Images 2026-04-10 cs.CV;q-bio.QM q-bio.QM https://arxiv.org/abs/2604.09370 False False 2604.09403 Efficient Shapley values computation for Boolean network models of gene regulation 2026-04-10 q-bio.MN q-bio.MN https://arxiv.org/abs/2604.09403 0.7673 0.7485 True 6 6.6 False 2604.09451 An Open-Source, Open Data Approach to Activity Classification from Triaxial Accelerometry in an Ambulatory Setting 2026-04-10 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2604.09451 False False 2604.09509 An Improved Bipartition Cover Bound for the Multispecies Coalescent Model 2026-04-10 math.PR;q-bio.PE q-bio.PE https://arxiv.org/abs/2604.09509 False False 2604.09540 A Physically-Informed Subgraph Isomorphism Approach to Molecular Docking Using Quantum Annealers 2026-04-10 cs.ET;q-bio.BM q-bio.BM https://arxiv.org/abs/2604.09540 False False 2604.09911 The Rise and Fall of $G$ in AGI 2026-04-10 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.09911 False False 2604.09911 The Rise and Fall of $G$ in AGI 2026-04-10 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.09911 False False 2604.11818 Scale-dependent Temporal Signatures of Arboviral Transmission in Urban Environments 2026-04-10 math.PR;q-bio.PE q-bio.PE https://arxiv.org/abs/2604.11818 False False 2604.11818 Scale-dependent Temporal Signatures of Arboviral Transmission in Urban Environments 2026-04-10 math.PR;q-bio.PE q-bio.PE https://arxiv.org/abs/2604.11818 False False 2604.19799 Measuring Creativity in the Age of Generative AI: Distinguishing Human and AI-Generated Creative Performance in Hiring and Talent Systems 2026-04-10 cs.AI;cs.CY;cs.HC;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.19799 False False 2604.19799 Measuring Creativity in the Age of Generative AI: Distinguishing Human and AI-Generated Creative Performance in Hiring and Talent Systems 2026-04-10 cs.AI;cs.CY;cs.HC;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.19799 False False 2604.09403 Efficient Shapley values computation for Boolean network models of gene regulation 2026-04-10 q-bio.MN q-bio.MN https://arxiv.org/abs/2604.09403 0.7673 0.7485 True 6 6.6 False 2604.09403 Efficient Shapley values computation for Boolean network models of gene regulation 2026-04-10 q-bio.MN q-bio.MN https://arxiv.org/abs/2604.09403 0.7673 0.7485 True 6 6.6 False 2604.09229 The Fast Lane Hypothesis: Von Economo Neurons Implement a Biological Speed-Accuracy Tradeoff 2026-04-10 cs.AI;cs.NE;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.09229 False False 2604.09509 An Improved Bipartition Cover Bound for the Multispecies Coalescent Model 2026-04-10 math.PR;q-bio.PE q-bio.PE https://arxiv.org/abs/2604.09509 False False 2604.09229 The Fast Lane Hypothesis: Von Economo Neurons Implement a Biological Speed-Accuracy Tradeoff 2026-04-10 cs.AI;cs.NE;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.09229 False False 2604.09509 An Improved Bipartition Cover Bound for the Multispecies Coalescent Model 2026-04-10 math.PR;q-bio.PE q-bio.PE https://arxiv.org/abs/2604.09509 False False 2604.07745 The Cartesian Cut in Agentic AI 2026-04-09 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.07745 False False 2604.07844 Platelet plug microstructure and flow modulate fibrin gelation dynamics: Insights from computational simulations 2026-04-09 q-bio.BM q-bio.BM https://arxiv.org/abs/2604.07844 False False 2604.07848 Information-Theoretic Requirements for Gradient-Based Task Affinity Estimation in Multi-Task Learning 2026-04-09 cs.LG;q-bio.MN q-bio.MN https://arxiv.org/abs/2604.07848 False False 2604.08305 HistDiT: A Structure-Aware Latent Conditional Diffusion Model for High-Fidelity Virtual Staining in Histopathology 2026-04-09 cs.AI;cs.CV;cs.ET;cs.LG;eess.IV;q-bio.QM q-bio.QM https://arxiv.org/abs/2604.08305 False False 2604.08312 Neuromodulation supports robust rhythmic pattern transitions in degenerate central pattern generators with fixed connectivity 2026-04-09 math.DS;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.08312 False False 2604.08420 Analysis of non pharmaceutical interventions with SIR epidemic models: decreasing the infection peak vs. minimizing the epidemic size 2026-04-09 physics.soc-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2604.08420 False False 2604.08507 A Quasi-Regression Method for the Mediation Analysis of Zero-Inflated Single-Cell Data 2026-04-09 q-bio.QM;stat.AP;stat.ME q-bio.QM https://arxiv.org/abs/2604.08507 False False 2604.08537 Meta-learning In-Context Enables Training-Free Cross Subject Brain Decoding 2026-04-09 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.08537 False False 2604.07745 The Cartesian Cut in Agentic AI 2026-04-09 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.07745 False False 2604.07844 Platelet plug microstructure and flow modulate fibrin gelation dynamics: Insights from computational simulations 2026-04-09 q-bio.BM q-bio.BM https://arxiv.org/abs/2604.07844 False False 2604.07848 Information-Theoretic Requirements for Gradient-Based Task Affinity Estimation in Multi-Task Learning 2026-04-09 cs.LG;q-bio.MN q-bio.MN https://arxiv.org/abs/2604.07848 False False 2604.08305 HistDiT: A Structure-Aware Latent Conditional Diffusion Model for High-Fidelity Virtual Staining in Histopathology 2026-04-09 cs.AI;cs.CV;cs.ET;cs.LG;eess.IV;q-bio.QM q-bio.QM https://arxiv.org/abs/2604.08305 False False 2604.08312 Neuromodulation supports robust rhythmic pattern transitions in degenerate central pattern generators with fixed connectivity 2026-04-09 math.DS;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.08312 False False 2604.08420 Analysis of non pharmaceutical interventions with SIR epidemic models: decreasing the infection peak vs. minimizing the epidemic size 2026-04-09 physics.soc-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2604.08420 False False 2604.08507 A Quasi-Regression Method for the Mediation Analysis of Zero-Inflated Single-Cell Data 2026-04-09 q-bio.QM;stat.AP;stat.ME q-bio.QM https://arxiv.org/abs/2604.08507 False False 2604.08537 Meta-learning In-Context Enables Training-Free Cross Subject Brain Decoding 2026-04-09 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.08537 False False 2604.08634 Resolving satellite-in situ mismatches in Net Primary Production using high-frequency in situ bio-optical observations in the subpolar Northwest Atlantic 2026-04-09 physics.EP;physics.ao-ph;q-bio.QM q-bio.QM https://arxiv.org/abs/2604.08634 False False 2604.08698 EvoLen: Evolution-Guided Tokenization for DNA Language Model 2026-04-09 cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2604.08698 False False 2604.08634 Resolving satellite-in situ mismatches in Net Primary Production using high-frequency in situ bio-optical observations in the subpolar Northwest Atlantic 2026-04-09 physics.EP;physics.ao-ph;q-bio.QM q-bio.QM https://arxiv.org/abs/2604.08634 False False 2604.08698 EvoLen: Evolution-Guided Tokenization for DNA Language Model 2026-04-09 cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2604.08698 False False 2604.18599 Simulation Based Inference of a Simple Neural Network Structure 2026-04-09 q-bio.NC;stat.AP q-bio.NC https://arxiv.org/abs/2604.18599 False False 2604.18603 Dual Triangle Attention: Effective Bidirectional Attention Without Positional Embeddings 2026-04-09 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2604.18603 False False 2604.07848 Information-Theoretic Requirements for Gradient-Based Task Affinity Estimation in Multi-Task Learning 2026-04-09 cs.LG;q-bio.MN q-bio.MN https://arxiv.org/abs/2604.07848 False False 2604.06549 The Mechanistic Invariance Test: Genomic Language Models Fail to Learn Positional Regulatory Logic 2026-04-08 q-bio.GN q-bio.GN https://arxiv.org/abs/2604.06549 False False 2604.06558 When Does Context Help? A Systematic Study of Target-Conditional Molecular Property Prediction 2026-04-08 cs.LG;q-bio.MN q-bio.MN https://arxiv.org/abs/2604.06558 False False 2604.06569 ECLIPSE: A Composable Pipeline for Predicting ecDNA Formation, Evolution, and Therapeutic Vulnerabilities in Cancer 2026-04-08 q-bio.GN q-bio.GN https://arxiv.org/abs/2604.06569 False False 2604.06835 WebCVTree4: A Newly Designed Phylogenetic and Taxonomic Study Platform for Prokaryotes Using Composition Vectors and Whole Genomes 2026-04-08 q-bio.GN;q-bio.PE q-bio.GN https://arxiv.org/abs/2604.06835 False False 2604.07038 Exploring the proprioceptive potential of joint receptors using a biomimetic robotic joint 2026-04-08 cs.RO;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.07038 False False 2604.07124 A modular approach to achieve multistationarity using AND-gates 2026-04-08 cs.SY;eess.SY;math.DS;q-bio.MN q-bio.MN https://arxiv.org/abs/2604.07124 False False 2604.07196 Probing 3D Chromatin Structure Awareness in Evo2 DNA Language Model 2026-04-08 q-bio.GN q-bio.GN https://arxiv.org/abs/2604.07196 False False 2604.07228 Emergence of cooperation in nonlinear higher-order public goods games 2026-04-08 cs.GT;cs.SI;math.DS;physics.soc-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2604.07228 False False 2604.07309 Generation time in a discrete epidemic model with asymptomatic carriers: beyond geometric waiting times 2026-04-08 q-bio.PE;q-bio.QM q-bio.PE https://arxiv.org/abs/2604.07309 False False 2604.07347 Temporal Structure Mediates the Robustness and Collapse of Plant-Pollinator Networks 2026-04-08 physics.soc-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2604.07347 False False 2604.06549 The Mechanistic Invariance Test: Genomic Language Models Fail to Learn Positional Regulatory Logic 2026-04-08 q-bio.GN q-bio.GN https://arxiv.org/abs/2604.06549 False False 2604.06569 ECLIPSE: A Composable Pipeline for Predicting ecDNA Formation, Evolution, and Therapeutic Vulnerabilities in Cancer 2026-04-08 q-bio.GN q-bio.GN https://arxiv.org/abs/2604.06569 False False 2604.06835 WebCVTree4: A Newly Designed Phylogenetic and Taxonomic Study Platform for Prokaryotes Using Composition Vectors and Whole Genomes 2026-04-08 q-bio.GN;q-bio.PE q-bio.GN https://arxiv.org/abs/2604.06835 False False 2604.07038 Exploring the proprioceptive potential of joint receptors using a biomimetic robotic joint 2026-04-08 cs.RO;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.07038 False False 2604.06558 When Does Context Help? A Systematic Study of Target-Conditional Molecular Property Prediction 2026-04-08 cs.LG;q-bio.BM;q-bio.MN q-bio.BM https://arxiv.org/abs/2604.06558 False False 2604.07124 A modular approach to achieve multistationarity using AND-gates 2026-04-08 cs.SY;eess.SY;math.DS;q-bio.MN q-bio.MN https://arxiv.org/abs/2604.07124 False False 2604.07196 Probing 3D Chromatin Structure Awareness in Evo2 DNA Language Model 2026-04-08 q-bio.GN q-bio.GN https://arxiv.org/abs/2604.07196 False False 2604.07228 Emergence of cooperation in nonlinear higher-order public goods games 2026-04-08 cs.GT;cs.SI;math.DS;physics.soc-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2604.07228 False False 2604.07309 Generation time in a discrete epidemic model with asymptomatic carriers: beyond geometric waiting times 2026-04-08 q-bio.PE;q-bio.QM q-bio.PE https://arxiv.org/abs/2604.07309 False False 2604.07347 Temporal Structure Mediates the Robustness and Collapse of Plant-Pollinator Networks 2026-04-08 physics.soc-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2604.07347 False False 2604.07557 Validated Synthetic Patient Generation for Small Longitudinal Cohorts: Coagulation Dynamics Across Pregnancy 2026-04-08 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2604.07557 False False 2604.07560 Predicting Activity Cliffs for Autonomous Medicinal Chemistry 2026-04-08 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2604.07560 False False 2604.07576 Quantifying the Spatiotemporal Dynamics of Engineered Cardiac Microbundles 2026-04-08 q-bio.QM;stat.AP q-bio.QM https://arxiv.org/abs/2604.07576 False False 2604.07602 The Principle of Maximum Heterogeneity Optimises Productivity in Distributed Production Systems Across Biology, Economics, and Computing 2026-04-08 cs.CE;cs.NE;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.07602 False False 2604.07557 Validated Synthetic Patient Generation for Small Longitudinal Cohorts: Coagulation Dynamics Across Pregnancy 2026-04-08 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2604.07557 False False 2604.07560 Predicting Activity Cliffs for Autonomous Medicinal Chemistry 2026-04-08 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2604.07560 False False 2604.07576 Quantifying the Spatiotemporal Dynamics of Engineered Cardiac Microbundles 2026-04-08 q-bio.QM;stat.AP q-bio.QM https://arxiv.org/abs/2604.07576 False False 2604.07602 The Principle of Maximum Heterogeneity Optimises Productivity in Distributed Production Systems Across Biology, Economics, and Computing 2026-04-08 cs.CE;cs.NE;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.07602 False False 2604.08604 Quantum-like Cognition in Process Theories: An Analysis 2026-04-08 physics.quant-ph;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.08604 False False 2604.08604 Quantum-like Cognition in Process Theories: An Analysis 2026-04-08 physics.quant-ph;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.08604 False False 2604.07309 Generation time in a discrete epidemic model with asymptomatic carriers: beyond geometric waiting times 2026-04-08 q-bio.PE;q-bio.QM q-bio.PE https://arxiv.org/abs/2604.07309 False False 2604.07309 Generation time in a discrete epidemic model with asymptomatic carriers: beyond geometric waiting times 2026-04-08 q-bio.PE;q-bio.QM q-bio.PE https://arxiv.org/abs/2604.07309 False False 2604.16463 MLE-Toolbox: An Open-Source Toolbox for Comprehensive EEG and MEG Data Analysis 2026-04-08 cs.AI;cs.SE;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.16463 False False 2604.05423 A graph based advection framework for climate-driven species distribution 2026-04-07 math.DS;q-bio.PE q-bio.PE https://arxiv.org/abs/2604.05423 False False 2604.05478 Transcriptomic Models for Immunotherapy Response Prediction Show Limited Cross-cohort Generalisability 2026-04-07 cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2604.05478 False False 2604.05556 Marangoni-Driven Redistribution and Activity of Piezo1 Molecules in Epithelial and Cancer Cells 2026-04-07 q-bio.CB q-bio.CB https://arxiv.org/abs/2604.05556 False False 2604.05573 Haematocrit and Shear Rate Modulate Local Cell-free Layer Thickness and Platelet Margination in Blood Flow Along a Sinusoidal Wall 2026-04-07 physics.bio-ph;physics.flu-dyn;q-bio.TO q-bio.TO https://arxiv.org/abs/2604.05573 False False 2604.05720 Mathematical Models of Evolution and Replicator Systems Dynamics. Chapter 1: Introduction to Replicator Systems 2026-04-07 math.DS;q-bio.PE q-bio.PE https://arxiv.org/abs/2604.05720 False False 2604.05774 GenomeQA: Benchmarking General Large Language Models for Genome Sequence Understanding 2026-04-07 cs.CL;q-bio.GN q-bio.GN https://arxiv.org/abs/2604.05774 False False 2604.05775 PhageBench: Can LLMs Understand Raw Bacteriophage Genomes? 2026-04-07 cs.CL;q-bio.GN q-bio.GN https://arxiv.org/abs/2604.05775 False False 2604.05844 Modeling Patient Care Trajectories with Transformer Hawkes Processes 2026-04-07 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2604.05844 False False 2604.05423 A graph based advection framework for climate-driven species distribution 2026-04-07 math.DS;q-bio.PE q-bio.PE https://arxiv.org/abs/2604.05423 False False 2604.05478 Transcriptomic Models for Immunotherapy Response Prediction Show Limited Cross-cohort Generalisability 2026-04-07 cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2604.05478 False False 2604.05556 Marangoni-Driven Redistribution and Activity of Piezo1 Molecules in Epithelial and Cancer Cells 2026-04-07 q-bio.CB q-bio.CB https://arxiv.org/abs/2604.05556 False False 2604.05573 Haematocrit and Shear Rate Modulate Local Cell-free Layer Thickness and Platelet Margination in Blood Flow Along a Sinusoidal Wall 2026-04-07 physics.bio-ph;physics.flu-dyn;q-bio.TO q-bio.TO https://arxiv.org/abs/2604.05573 False False 2604.05720 Mathematical Models of Evolution and Replicator Systems Dynamics. Chapter 1: Introduction to Replicator Systems 2026-04-07 math.DS;q-bio.PE q-bio.PE https://arxiv.org/abs/2604.05720 False False 2604.05774 GenomeQA: Benchmarking General Large Language Models for Genome Sequence Understanding 2026-04-07 cs.CL;q-bio.GN q-bio.GN https://arxiv.org/abs/2604.05774 False False 2604.05775 PhageBench: Can LLMs Understand Raw Bacteriophage Genomes? 2026-04-07 cs.CL;q-bio.GN q-bio.GN https://arxiv.org/abs/2604.05775 False False 2604.05844 Modeling Patient Care Trajectories with Transformer Hawkes Processes 2026-04-07 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2604.05844 False False 2604.06262 From Exposure to Internalization: Dual-Stream Calibration for In-context Clinical Reasoning 2026-04-07 cs.AI;q-bio.QM q-bio.QM https://arxiv.org/abs/2604.06262 False False 2604.06264 ToxReason: A Benchmark for Mechanistic Chemical Toxicity Reasoning via Adverse Outcome Pathway 2026-04-07 cs.AI;q-bio.QM q-bio.QM https://arxiv.org/abs/2604.06264 False False 2604.06269 MAT-Cell: A Multi-Agent Tree-Structured Reasoning Framework for Batch-Level Single-Cell Annotation 2026-04-07 cs.AI;q-bio.QM q-bio.QM https://arxiv.org/abs/2604.06269 False False 2604.06395 Bridging Theory and Practice in Crafting Robust Spiking Reservoirs 2026-04-07 cs.LG;q-bio.NC;stat.ML q-bio.NC https://arxiv.org/abs/2604.06395 False False 2604.06262 From Exposure to Internalization: Dual-Stream Calibration for In-context Clinical Reasoning 2026-04-07 cs.AI;q-bio.QM q-bio.QM https://arxiv.org/abs/2604.06262 False False 2604.06264 ToxReason: A Benchmark for Mechanistic Chemical Toxicity Reasoning via Adverse Outcome Pathway 2026-04-07 cs.AI;q-bio.QM q-bio.QM https://arxiv.org/abs/2604.06264 False False 2604.06269 MAT-Cell: A Multi-Agent Tree-Structured Reasoning Framework for Batch-Level Single-Cell Annotation 2026-04-07 cs.AI;q-bio.QM q-bio.QM https://arxiv.org/abs/2604.06269 False False 2604.06395 Bridging Theory and Practice in Crafting Robust Spiking Reservoirs 2026-04-07 cs.LG;q-bio.NC;stat.ML q-bio.NC https://arxiv.org/abs/2604.06395 False False 2604.08600 Gaze2Report: Radiology Report Generation via Visual-Gaze Prompt Tuning of LLMs 2026-04-07 eess.IV;q-bio.TO q-bio.TO https://arxiv.org/abs/2604.08600 False False 2604.08600 Gaze2Report: Radiology Report Generation via Visual-Gaze Prompt Tuning of LLMs 2026-04-07 eess.IV;q-bio.TO q-bio.TO https://arxiv.org/abs/2604.08600 False False 2604.09702 Identity-Aware U-Net: Fine-grained Cell Segmentation via Identity-Aware Representation Learning 2026-04-07 cs.AI;cs.CV;q-bio.QM q-bio.QM https://arxiv.org/abs/2604.09702 False False 2604.09702 Identity-Aware U-Net: Fine-grained Cell Segmentation via Identity-Aware Representation Learning 2026-04-07 cs.AI;cs.CV;q-bio.QM q-bio.QM https://arxiv.org/abs/2604.09702 False False 2604.05478 Transcriptomic Models for Immunotherapy Response Prediction Show Limited Cross-cohort Generalisability 2026-04-07 cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2604.05478 False False 2604.05478 Transcriptomic Models for Immunotherapy Response Prediction Show Limited Cross-cohort Generalisability 2026-04-07 cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2604.05478 False False 2604.05478 Transcriptomic Models for Immunotherapy Response Prediction Show Limited Cross-cohort Generalisability 2026-04-07 cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2604.05478 False False 2604.16450 FairLogue: Evaluating Intersectional Fairness across Clinical Machine Learning Use Cases using the All of Us Research Program 2026-04-07 cs.CY;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2604.16450 False False 2604.06269 MAT-Cell: A Multi-Agent Tree-Structured Reasoning Framework for Batch-Level Single-Cell Annotation 2026-04-07 cs.AI;q-bio.QM q-bio.QM https://arxiv.org/abs/2604.06269 False False 2604.06269 MAT-Cell: A Multi-Agent Tree-Structured Reasoning Framework for Batch-Level Single-Cell Annotation 2026-04-07 cs.AI;q-bio.QM q-bio.QM https://arxiv.org/abs/2604.06269 False False 2604.16450 Evaluating Intersectional Fairness across Clinical Machine Learning Use Cases using Fairlogue and the All of Us Research Program 2026-04-07 cs.CY;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2604.16450 False False 2604.16450 Evaluating Intersectional Fairness across Clinical Machine Learning Use Cases using Fairlogue and the All of Us Research Program 2026-04-07 cs.CY;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2604.16450 False False 2604.05720 Mathematical Models of Evolution and Replicator Systems Dynamics. Chapter 1: Introduction to Replicator Systems 2026-04-07 math.DS;q-bio.PE q-bio.PE https://arxiv.org/abs/2604.05720 False False 2604.05720 Mathematical Models of Evolution and Replicator Systems Dynamics. Chapter 1: Introduction to Replicator Systems 2026-04-07 math.DS;q-bio.PE q-bio.PE https://arxiv.org/abs/2604.05720 False False 2604.04469 Same Geometry, Opposite Noise: Transformer Magnitude Representations Lack Scalar Variability 2026-04-06 cs.CL;q-bio.QM q-bio.QM https://arxiv.org/abs/2604.04469 False False 2604.04677 Towards protein folding pathways by reconstructing protein residue networks with a policy-driven model 2026-04-06 cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2604.04677 False False 2604.04770 Regime Mapping of Oscillatory States in Balanced Spiking Networks with Multiple Time Scales 2026-04-06 cs.NE;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.04770 False False 2604.04858 FairLogue: A Toolkit for Intersectional Fairness Analysis in Clinical Machine Learning Models 2026-04-06 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2604.04858 False False 2604.05004 Causal Stance 2026-04-06 physics.hist-ph;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.05004 False False 2604.05056 Nested tree space: a geometric framework for co-phylogeny 2026-04-06 math.CO;math.MG;q-bio.PE q-bio.PE https://arxiv.org/abs/2604.05056 False False 2604.05142 A mathematical theory of evolution for self-designing AIs 2026-04-06 cs.AI;cs.CY;q-bio.PE q-bio.PE https://arxiv.org/abs/2604.05142 False False 2604.05215 Hierarchical Mesh Transformers with Topology-Guided Pretraining for Morphometric Analysis of Brain Structures 2026-04-06 cs.CV;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.05215 False False 2604.05004 Causal Stance 2026-04-06 physics.hist-ph;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.05004 False False 2604.05056 Nested tree space: a geometric framework for co-phylogeny 2026-04-06 math.CO;math.MG;q-bio.PE q-bio.PE https://arxiv.org/abs/2604.05056 False False 2604.05142 A mathematical theory of evolution for self-designing AIs 2026-04-06 cs.AI;cs.CY;q-bio.PE q-bio.PE https://arxiv.org/abs/2604.05142 False False 2604.05215 Hierarchical Mesh Transformers with Topology-Guided Pretraining for Morphometric Analysis of Brain Structures 2026-04-06 cs.CV;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.05215 False False 2604.05042 Energy-Based Dynamical Models for Neurocomputation, Learning, and Optimization 2026-04-06 cs.LG;cs.SY;eess.SY;math.DS;physics.dis-nn;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.05042 False False 2604.07368 Time-Varying Environmental and Polygenic Predictors of Substance Use Initiation in Youth: A Survival and Causal Modeling Study in the ABCD Cohort 2026-04-06 q-bio.QM q-bio.QM https://arxiv.org/abs/2604.07368 False False 2604.05042 Energy-Based Dynamical Models for Neurocomputation, Learning, and Optimization 2026-04-06 cs.LG;cs.SY;eess.SY;math.DS;physics.dis-nn;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.05042 False False 2604.07368 Time-Varying Environmental and Polygenic Predictors of Substance Use Initiation in Youth: A Survival and Causal Modeling Study in the ABCD Cohort 2026-04-06 q-bio.QM q-bio.QM https://arxiv.org/abs/2604.07368 False False 2604.05004 Causal Stance 2026-04-06 physics.hist-ph;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.05004 False False 2604.05004 Causal Stance 2026-04-06 physics.hist-ph;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.05004 False False 2604.05142 A mathematical theory of evolution for self-designing AIs 2026-04-06 cs.AI;cs.CY;q-bio.PE q-bio.PE https://arxiv.org/abs/2604.05142 False False 2604.05142 A mathematical theory of evolution for self-designing AIs 2026-04-06 cs.AI;cs.CY;q-bio.PE q-bio.PE https://arxiv.org/abs/2604.05142 False False 2604.05056 Nested tree space: a geometric framework for co-phylogeny 2026-04-06 math.CO;math.MG;q-bio.PE q-bio.PE https://arxiv.org/abs/2604.05056 False False 2604.05056 Nested tree space: a geometric framework for co-phylogeny 2026-04-06 math.CO;math.MG;q-bio.PE q-bio.PE https://arxiv.org/abs/2604.05056 False False 2604.16434 Support Sufficiency as Consequence-Sensitive Compression in Belief Arbitration 2026-04-06 cs.AI;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.16434 False False 2604.05004 Causal Stance 2026-04-06 physics.hist-ph;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.05004 False False 2604.05004 Causal Stance 2026-04-06 physics.hist-ph;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.05004 False False 2604.07368 Time-Varying Environmental and Polygenic Predictors of Substance Use Initiation in Youth: A Survival and Causal Modeling Study in the ABCD Cohort 2026-04-06 q-bio.QM q-bio.QM https://arxiv.org/abs/2604.07368 False False 2604.07368 Time-Varying Environmental and Polygenic Predictors of Substance Use Initiation in Youth: A Survival and Causal Modeling Study in the ABCD Cohort 2026-04-06 q-bio.QM q-bio.QM https://arxiv.org/abs/2604.07368 False False 2604.03911 Align Your Structures: Generating Trajectories with Structure Pretraining for Molecular Dynamics 2026-04-05 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2604.03911 False False 2604.03952 Multidimensional physical fitness is associated with reduced dementia risk through proteomic and neuroimaging pathways: a prospective cohort study of the UK Biobank 2026-04-05 q-bio.QM;stat.AP q-bio.QM https://arxiv.org/abs/2604.03952 False False 2604.04025 Neurological Plausibility of AI-Generated Music for Commercial Environments: An In-Silico Cortical Investigation Using Wubble and TRIBE v2 2026-04-05 cs.SD;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.04025 False False 2604.04033 Topological Sensitivity in Connectome-Constrained Neural Networks 2026-04-05 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.04033 False False 2604.04069 The physical basis of information flow in neural matter: a thermocoherent perspective on cognitive dynamics 2026-04-05 physics.quant-ph;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.04069 False False 2604.04154 Non-Equilibrium Stochastic Dynamics as a Unified Framework for Insight and Repetitive Learning: A Kramers Escape Approach to Continual Learning 2026-04-05 cs.LG;physics.dis-nn;physics.stat-mech;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.04154 False False 2604.04155 The Geometric Alignment Tax: Tokenization vs. Continuous Geometry in Scientific Foundation Models 2026-04-05 cs.IT;cs.LG;math.IT;q-bio.QM;stat.ML q-bio.QM https://arxiv.org/abs/2604.04155 False False 2604.04239 Good Rankings, Wrong Probabilities: A Calibration Audit of Multimodal Cancer Survival Models 2026-04-05 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2604.04239 False False 2604.04285 Amplification at Equilibrium: Structural and Thermodynamic Limitations, and Implementation 2026-04-05 cs.ET;physics.bio-ph;physics.chem-ph;q-bio.MN q-bio.MN https://arxiv.org/abs/2604.04285 False False 2604.04287 Entropy, Disagreement, and the Limits of Foundation Models in Genomics 2026-04-05 cs.CL;cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2604.04287 False False 2604.04305 Partial health status observability and time horizon uncertainty in mean-field game epidemiological models 2026-04-05 math.OC;q-bio.PE q-bio.PE https://arxiv.org/abs/2604.04305 False False 2604.04305 Partial health status observability and time horizon uncertainty in mean-field game epidemiological models 2026-04-05 math.OC;q-bio.PE q-bio.PE https://arxiv.org/abs/2604.04305 False False 2604.04069 The physical basis of information flow in neural matter: a thermocoherent perspective on cognitive dynamics 2026-04-05 physics.quant-ph;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.04069 False False 2604.04069 The physical basis of information flow in neural matter: a thermocoherent perspective on cognitive dynamics 2026-04-05 physics.quant-ph;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.04069 False False 2604.04285 Amplification at Equilibrium: Structural and Thermodynamic Limitations, and Implementation 2026-04-05 cs.ET;physics.bio-ph;physics.chem-ph;q-bio.MN q-bio.MN https://arxiv.org/abs/2604.04285 False False 2604.04285 Amplification at Equilibrium: Structural and Thermodynamic Limitations, and Implementation 2026-04-05 cs.ET;physics.bio-ph;physics.chem-ph;q-bio.MN q-bio.MN https://arxiv.org/abs/2604.04285 False False 2604.04287 Entropy, Disagreement, and the Limits of Foundation Models in Genomics 2026-04-05 cs.CL;cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2604.04287 False False 2604.04285 Amplification at Equilibrium: Structural and Thermodynamic Limitations, and Implementation 2026-04-05 cs.ET;physics.bio-ph;physics.chem-ph;q-bio.MN q-bio.MN https://arxiv.org/abs/2604.04285 False False 2604.04285 Amplification at Equilibrium: Structural and Thermodynamic Limitations, and Implementation 2026-04-05 cs.ET;physics.bio-ph;physics.chem-ph;q-bio.MN q-bio.MN https://arxiv.org/abs/2604.04285 False False 2604.03538 Thermal fluctuations set fundamental limits on ion channel function 2026-04-04 physics.bio-ph;physics.stat-mech;q-bio.SC q-bio.SC https://arxiv.org/abs/2604.03538 False False 2604.03625 Overcoming unfairness via repeated interactions in mini-ultimatum game 2026-04-04 econ.TH;physics.AO;physics.bio-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2604.03625 False False 2604.03630 A Multimodal Foundation Model of Spatial Transcriptomics and Histology for Biological Discovery and Clinical Prediction 2026-04-04 cs.AI;q-bio.QM q-bio.QM https://arxiv.org/abs/2604.03630 False False 2604.03791 Acceleration of Moment Bound Optimization for Stochastic Chemical Reactions Using Reaction-wise Sparsity of Moment Equations 2026-04-04 cs.SY;eess.SY;math.OC;q-bio.QM q-bio.QM https://arxiv.org/abs/2604.03791 False False 2604.03794 Bounding Transient Moments for a Class of Stochastic Reaction Networks Using Kolmogorov's Backward Equation 2026-04-04 cs.SY;eess.SY;q-bio.QM q-bio.QM https://arxiv.org/abs/2604.03794 False False 2604.03554 Eigencone Constellations on Ranked Spheres 2026-04-04 cs.CG;math.AP;q-bio.BM q-bio.BM https://arxiv.org/abs/2604.03554 False False 2604.04981 An Imbalanced Dataset with Multiple Feature Representations for Studying Quality Control of Next-Generation Sequencing 2026-04-04 cs.LG;cs.NE;q-bio.GN q-bio.GN https://arxiv.org/abs/2604.04981 False False 2604.03554 Eigencone Constellations on Ranked Spheres 2026-04-04 cs.CG;math.AP;q-bio.BM q-bio.BM https://arxiv.org/abs/2604.03554 False False 2604.04981 An Imbalanced Dataset with Multiple Feature Representations for Studying Quality Control of Next-Generation Sequencing 2026-04-04 cs.LG;cs.NE;q-bio.GN q-bio.GN https://arxiv.org/abs/2604.04981 False False 2604.04981 An Imbalanced Dataset with Multiple Feature Representations for Studying Quality Control of Next-Generation Sequencing 2026-04-04 cs.LG;cs.NE;q-bio.GN q-bio.GN https://arxiv.org/abs/2604.04981 False False 2604.02842 ViraHinter: a dual-modal artificial intelligence framework for predicting virus-host interactions 2026-04-03 q-bio.BM q-bio.BM https://arxiv.org/abs/2604.02842 False False 2604.02886 High-dimensional Many-to-many-to-many Mediation Analysis 2026-04-03 q-bio.GN;q-bio.QM;stat.AP;stat.ME;stat.ML q-bio.GN https://arxiv.org/abs/2604.02886 False False 2604.03021 Temporal structure of the language hierarchy within small cortical patches 2026-04-03 q-bio.NC q-bio.NC https://arxiv.org/abs/2604.03021 False False 2604.03028 Synonymous Codon Usage Bias Overrides Phylogeny to Reflect Convergent Frond Architecture in a Rapidly Radiating Fern Family Thelypteridaceae 2026-04-03 q-bio.GN;q-bio.PE q-bio.GN https://arxiv.org/abs/2604.03028 False False 2604.03361 The limits of bio-molecular modeling with large language models : a cross-scale evaluation 2026-04-03 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2604.03361 False False 2604.03476 Fine-tuning DeepSeek-OCR-2 for Molecular Structure Recognition 2026-04-03 cs.AI;cs.CV;q-bio.BM q-bio.BM https://arxiv.org/abs/2604.03476 False False 2604.03480 Large Language Models Align with the Human Brain during Creative Thinking 2026-04-03 cs.AI;cs.CL;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.03480 False False 2604.04958 Self-Supervised Foundation Model for Calcium-imaging Population Dynamics 2026-04-03 cs.AI;q-bio.NC;q-bio.QM q-bio.NC https://arxiv.org/abs/2604.04958 False False 2604.04958 Self-Supervised Foundation Model for Calcium-imaging Population Dynamics 2026-04-03 cs.AI;q-bio.NC;q-bio.QM q-bio.NC https://arxiv.org/abs/2604.04958 False False 2604.04958 Self-Supervised Foundation Model for Calcium-imaging Population Dynamics 2026-04-03 cs.AI;q-bio.NC;q-bio.QM q-bio.NC https://arxiv.org/abs/2604.04958 False False 2604.14200 Retina gap junctions support the robust perception by warping neural representational geometries along the visual hierarchy 2026-04-03 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.14200 False False 2604.14202 Bridging scalp and intracranial EEG in BCI via pretrained neural representations and geometric constraint embedding 2026-04-03 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.14202 False False 2604.14200 Retina gap junctions support the robust perception by warping neural representational geometries along the visual hierarchy 2026-04-03 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.14200 False False 2604.14202 Bridging scalp and intracranial EEG in BCI via pretrained neural representations and geometric constraint embedding 2026-04-03 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.14202 False False 2604.03476 Fine-tuning DeepSeek-OCR-2 for Molecular Structure Recognition 2026-04-03 cs.AI;cs.CV;q-bio.BM q-bio.BM https://arxiv.org/abs/2604.03476 False False 2604.04958 CalM: A Self-Supervised Foundation Model for Population Dynamics in Calcium Imaging Data 2026-04-03 cs.AI;q-bio.NC;q-bio.QM q-bio.NC https://arxiv.org/abs/2604.04958 False False 2604.04958 CalM: A Self-Supervised Foundation Model for Population Dynamics in Calcium Imaging Data 2026-04-03 cs.AI;q-bio.NC;q-bio.QM q-bio.NC https://arxiv.org/abs/2604.04958 False False 2604.03480 Large Language Models Align with the Human Brain during Creative Thinking 2026-04-03 cs.AI;cs.CL;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.03480 False False 2604.01734 A Novel Multi-view Mixture Model Framework for Longitudinal Clustering with Application to ANCA-Associated Vasculitis 2026-04-02 q-bio.QM;stat.ME q-bio.QM https://arxiv.org/abs/2604.01734 False False 2604.01990 Evaluating Deep Surrogate Models for Knee Joint Contact Mechanics Under Input-Limited Conditions 2026-04-02 q-bio.QM q-bio.QM https://arxiv.org/abs/2604.01990 False False 2604.02057 Thermodynamic connectivity reveals functional specialization and multiplex organization of extrasynaptic signaling 2026-04-02 physics.AO;physics.bio-ph;physics.data-an;physics.dis-nn;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.02057 False False 2604.02166 Data Sieving for Scalable Real-Time Multichannel Nanopore Sensing 2026-04-02 physics.bio-ph;physics.ins-det;q-bio.BM q-bio.BM https://arxiv.org/abs/2604.02166 False False 2604.02203 QuantumXCT: Learning Interaction-Induced State Transformation in Cell-Cell Communication via Quantum Entanglement and Generative Modeling 2026-04-02 cs.ET;physics.bio-ph;physics.data-an;q-bio.GN q-bio.GN https://arxiv.org/abs/2604.02203 False False 2604.02212 Phase estimation with autoregressive padding (PEAP): addressing inaccuracies and biases in EEG analysis 2026-04-02 q-bio.NC q-bio.NC https://arxiv.org/abs/2604.02212 False False 2604.02394 Benchmarking Heritability Estimation Strategies Across 86 Configurations and Their Downstream Effect on Polygenic Risk Score Performance 2026-04-02 q-bio.GN;stat.ME q-bio.GN https://arxiv.org/abs/2604.02394 False False 2604.02511 Re-analysis of the Human Transcription Factor Atlas Recovers TF-Specific Signatures from Pooled Single-Cell Screens with Missing Controls 2026-04-02 cs.LG;q-bio.GN;q-bio.MN q-bio.GN https://arxiv.org/abs/2604.02511 False False 2604.01949 annbatch unlocks terabyte-scale training of biological data in anndata 2026-04-02 cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2604.01949 False False 2604.02203 QuantumXCT: Learning Interaction-Induced State Transformation in Cell-Cell Communication via Quantum Entanglement and Generative Modeling 2026-04-02 cs.ET;physics.bio-ph;physics.data-an;q-bio.GN q-bio.GN https://arxiv.org/abs/2604.02203 False False 2604.02203 QuantumXCT: Learning Interaction-Induced State Transformation in Cell-Cell Communication via Quantum Entanglement and Generative Modeling 2026-04-02 cs.ET;physics.bio-ph;physics.data-an;q-bio.GN q-bio.GN https://arxiv.org/abs/2604.02203 False False 2604.08594 Mapping generative AI use in the human brain: divergent neural, academic, and mental health profiles of functional versus socio emotional AI use 2026-04-02 cs.AI;cs.HC;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.08594 False False 2604.08594 Mapping generative AI use in the human brain: divergent neural, academic, and mental health profiles of functional versus socio emotional AI use 2026-04-02 cs.AI;cs.HC;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.08594 False False 2604.02511 Re-analysis of the Human Transcription Factor Atlas Recovers TF-Specific Signatures from Pooled Single-Cell Screens with Missing Controls 2026-04-02 cs.LG;q-bio.GN;q-bio.MN q-bio.GN https://arxiv.org/abs/2604.02511 False False 2604.02511 Re-analysis of the Human Transcription Factor Atlas Recovers TF-Specific Signatures from Pooled Single-Cell Screens with Missing Controls 2026-04-02 cs.LG;q-bio.GN;q-bio.MN q-bio.GN https://arxiv.org/abs/2604.02511 False False 2604.00349 Ultrasonic Brain Computer Interfaces for Enhancing Human-Machine Cognition 2026-04-01 q-bio.NC q-bio.NC https://arxiv.org/abs/2604.00349 False False 2604.00393 How to Forage for a Mate? 2026-04-01 q-bio.PE q-bio.PE https://arxiv.org/abs/2604.00393 False False 2604.00467 Stiff-FCS: Single-Cell Stiffness Profiling With Integrated Molecular and Functional Analysis 2026-04-01 q-bio.CB q-bio.CB https://arxiv.org/abs/2604.00467 False False 2604.00470 Contact-Dependent Ion Gating Explains Directional Asymmetry in the Bacterial Flagellar Motor 2026-04-01 physics.bio-ph;q-bio.BM q-bio.BM https://arxiv.org/abs/2604.00470 False False 2604.00580 Representation choice shapes the interpretation of protein conformational dynamics 2026-04-01 cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2604.00580 False False 2604.00602 The fitness landscape of overlapping genes 2026-04-01 physics.bio-ph;q-bio.BM;q-bio.PE q-bio.BM https://arxiv.org/abs/2604.00602 False False 2604.00756 Stochastic ordering tools for continuous-time Markov chains and applications to reaction network models 2026-04-01 math.PR;q-bio.MN q-bio.MN https://arxiv.org/abs/2604.00756 False False 2604.00763 Non-ignorable fuzziness in granular counts: the case of RNA-seq data 2026-04-01 q-bio.GN;stat.AP;stat.ME q-bio.GN https://arxiv.org/abs/2604.00763 False False 2604.00871 Analytical characterisation of the Mi- and To-phases in HeMiTo dynamics: exponential growth and logistic saturation of toxic prion-like proteins 2026-04-01 math.DS;q-bio.MN;q-bio.QM q-bio.MN https://arxiv.org/abs/2604.00871 False False 2604.01018 A Bilevel Integer Programming Approach for the Synchronous Attractor Control Problem 2026-04-01 cs.DM;math.DS;math.OC;q-bio.MN q-bio.MN https://arxiv.org/abs/2604.01018 0.785 0.778 True 6 6.9 False 2604.01169 Bridging the Simulation-to-Experiment Gap with Generative Models using Adversarial Distribution Alignment 2026-04-01 cs.LG;physics.mtrl-sci;q-bio.BM q-bio.BM https://arxiv.org/abs/2604.01169 False False 2604.01182 Digital nanophotonic biosensing empowered by silicon Mie voids 2026-04-01 physics.bio-ph;physics.optics;q-bio.BM q-bio.BM https://arxiv.org/abs/2604.01182 False False 2604.01187 Competition at the front of expanding populations 2026-04-01 physics.bio-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2604.01187 False False 2604.01252 A Data-Driven Measure of REM Sleep Propensity for Human and Rodent Sleep 2026-04-01 q-bio.QM q-bio.QM https://arxiv.org/abs/2604.01252 False False 2604.01295 Parallelized Hierarchical Connectome: A Spatiotemporal Recurrent Framework for Spiking State-Space Models 2026-04-01 q-bio.NC q-bio.NC https://arxiv.org/abs/2604.01295 False False 2604.01357 Cell Migration Boundary Motion in Drosophila Egg Chambers: A Combined Phase Field and Chemoattractant Model 2026-04-01 math.AP;q-bio.CB q-bio.CB https://arxiv.org/abs/2604.01357 False False 2604.01362 Multipath Channel Metrics and Detection in Vascular Molecular Communication: A Wireless-Inspired Perspective 2026-04-01 cs.IT;eess.SP;math.IT;q-bio.QM q-bio.QM https://arxiv.org/abs/2604.01362 False False 2604.01385 Strategies for tumor elimination and control under immune evasion and chemotherapy resistance 2026-04-01 q-bio.QM q-bio.QM https://arxiv.org/abs/2604.01385 False False 2604.01435 Osmotically Induced Shape Changes in Membrane Vesicles 2026-04-01 physics.soft;physics.stat-mech;q-bio.SC q-bio.SC https://arxiv.org/abs/2604.01435 False False 2604.01475 Interpretable Electrophysiological Features of Resting-State EEG Capture Cortical Network Dynamics in Parkinsons Disease 2026-04-01 q-bio.NC;q-bio.QM q-bio.NC https://arxiv.org/abs/2604.01475 False False 2604.02380 VeloTree: Inferring single-cell trajectories from RNA velocity fields with varifold distances 2026-04-01 math.MG;q-bio.GN;stat.ME q-bio.GN https://arxiv.org/abs/2604.02380 False False 2604.01475 Interpretable Electrophysiological Features of Resting-State EEG Capture Cortical Network Dynamics in Parkinsons Disease 2026-04-01 q-bio.NC;q-bio.QM q-bio.NC https://arxiv.org/abs/2604.01475 False False 2604.01475 Interpretable Electrophysiological Features of Resting-State EEG Capture Cortical Network Dynamics in Parkinsons Disease 2026-04-01 q-bio.NC;q-bio.QM q-bio.NC https://arxiv.org/abs/2604.01475 False False 2604.14193 QualiaNet: An Experience-Before-Inference Network 2026-04-01 cs.CV;eess.IV;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.14193 False False 2604.14193 QualiaNet: An Experience-Before-Inference Network 2026-04-01 cs.CV;eess.IV;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.14193 False False 2604.00763 Non-ignorable fuzziness in granular counts: the case of RNA-seq data 2026-04-01 q-bio.GN;stat.AP;stat.ME q-bio.GN https://arxiv.org/abs/2604.00763 False False 2604.00763 Non-ignorable fuzziness in granular counts: the case of RNA-seq data 2026-04-01 q-bio.GN;stat.AP;stat.ME q-bio.GN https://arxiv.org/abs/2604.00763 False False 2604.00763 Non-ignorable fuzziness in granular counts: the case of RNA-seq data 2026-04-01 q-bio.GN;stat.AP;stat.ME q-bio.GN https://arxiv.org/abs/2604.00763 False False 2604.00763 Non-ignorable fuzziness in granular counts: the case of RNA-seq data 2026-04-01 q-bio.GN;stat.AP;stat.ME q-bio.GN https://arxiv.org/abs/2604.00763 False False 2604.01295 Parallelized Hierarchical Connectome: A Spatiotemporal Recurrent Framework for Spiking State-Space Models 2026-04-01 q-bio.NC q-bio.NC https://arxiv.org/abs/2604.01295 False False 2604.01341 Perceptual misalignment of texture representations in convolutional neural networks 2026-04-01 cs.CV;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.01341 False False 2604.01295 Parallelized Hierarchical Connectome: A Spatiotemporal Recurrent Framework for Spiking State-Space Models 2026-04-01 q-bio.NC q-bio.NC https://arxiv.org/abs/2604.01295 False False 2604.01341 Perceptual misalignment of texture representations in convolutional neural networks 2026-04-01 cs.CV;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.01341 False False 2604.01187 Competition at the front of expanding populations 2026-04-01 physics.bio-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2604.01187 False False 2604.01187 Competition at the front of expanding populations 2026-04-01 physics.bio-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2604.01187 False False 2604.01475 Interpretable Electrophysiological Features of Resting-State EEG Capture Cortical Network Dynamics in Parkinsons Disease 2026-04-01 q-bio.NC;q-bio.QM q-bio.NC https://arxiv.org/abs/2604.01475 False False 2604.14193 QualiaNet: An Experience-Before-Inference Network 2026-04-01 cs.CV;eess.IV;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.14193 False False 2604.14193 QualiaNet: An Experience-Before-Inference Network 2026-04-01 cs.CV;eess.IV;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.14193 False False 2604.00470 Contact-Dependent Ion Gating Explains Directional Asymmetry in the Bacterial Flagellar Motor 2026-04-01 physics.bio-ph;q-bio.BM q-bio.BM https://arxiv.org/abs/2604.00470 False False 2604.00470 Contact-Dependent Ion Gating Explains Directional Asymmetry in the Bacterial Flagellar Motor 2026-04-01 physics.bio-ph;q-bio.BM q-bio.BM https://arxiv.org/abs/2604.00470 False False 2603.29116 Disentangling the interactive effects of anthropogenic disturbances on biodiversity 2026-03-31 q-bio.PE q-bio.PE https://arxiv.org/abs/2603.29116 0.7661 0.8093 True 6 5.7 False 2603.29176 Predicting Neuromodulation Outcome for Parkinson's Disease with Generative Virtual Brain Model 2026-03-31 cs.AI;cs.CE;cs.CV;q-bio.NC q-bio.NC https://arxiv.org/abs/2603.29176 False False 2603.29398 Pathogen diversity emerging from coevolutionary dynamics in interconnected systems 2026-03-31 q-bio.PE q-bio.PE https://arxiv.org/abs/2603.29398 False False 2603.29529 Sampling at intermediate temperatures is optimal for training large language models in protein structure prediction 2026-03-31 cs.LG;physics.dis-nn;q-bio.BM q-bio.BM https://arxiv.org/abs/2603.29529 False False 2603.29546 Sampling from the Solution Space and Metabolic Environments of Genome-Scale Metabolic Models 2026-03-31 q-bio.MN;q-bio.QM q-bio.MN https://arxiv.org/abs/2603.29546 False False 2603.29597 Structural and dynamical strategies to prevent runaway excitation in reservoir computing 2026-03-31 q-bio.NC q-bio.NC https://arxiv.org/abs/2603.29597 False False 2603.29617 Convergent Representations of Linguistic Constructions in Human and Artificial Neural Systems 2026-03-31 cs.AI;cs.CL;q-bio.NC q-bio.NC https://arxiv.org/abs/2603.29617 False False 2603.29684 FcsIT: An Open-Source, Cross-Platform Tool for Correlation and Analysis of Fluorescence Correlation Spectroscopy Data 2026-03-31 physics.data-an;q-bio.QM q-bio.QM https://arxiv.org/abs/2603.29684 False False 2603.29793 Multimodal Machine Learning for Early Prediction of Metastasis in a Swedish Multi-Cancer Cohort 2026-03-31 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2603.29793 False False 2603.29833 Copy-Spread-Annihilate Dynamics in Degree-Assortative Networks 2026-03-31 physics.AO;physics.dis-nn;physics.soc-ph;q-bio.NC q-bio.NC https://arxiv.org/abs/2603.29833 False False 2603.29843 Counterfactual Analysis of Brain Network Dynamics 2026-03-31 q-bio.NC q-bio.NC https://arxiv.org/abs/2603.29843 False False 2603.29903 Multimodal Higher-Order Brain Networks: A Topological Signal Processing Perspective 2026-03-31 eess.SP;q-bio.NC q-bio.NC https://arxiv.org/abs/2603.29903 False False 2603.29916 Growth-rate distributions at stationarity 2026-03-31 physics.data-an;q-bio.PE;q-bio.QM q-bio.PE https://arxiv.org/abs/2603.29916 False False 2603.29977 Quantifying Cross-Modal Interactions in Multimodal Glioma Survival Prediction via InterSHAP: Evidence for Additive Signal Integration 2026-03-31 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2603.29977 False False 2603.29986 ParetoEnsembles.jl: A Julia Package for Multiobjective Parameter Estimation Using Pareto Optimal Ensemble Techniques 2026-03-31 cs.MS;q-bio.QM q-bio.QM https://arxiv.org/abs/2603.29986 False False 2603.30004 From Patterns to Policy: A Scoping Review Based on Bibliometric Analysis (ScoRBA) of Intelligent and Secure Smart Hospital Ecosystems 2026-03-31 cs.CY;q-bio.NC q-bio.NC https://arxiv.org/abs/2603.30004 False False 2604.00058 GenoBERT: A Language Model for Accurate Genotype Imputation 2026-03-31 cs.AI;cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2604.00058 False False 2604.00065 Genetic algorithms for multi-omic feature selection: a comparative study in cancer survival analysis 2026-03-31 cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2604.00065 False False 2604.00075 Large Language Models for Variant-Centric Functional Evidence Mining 2026-03-31 q-bio.GN q-bio.GN https://arxiv.org/abs/2604.00075 False False 2604.00153 Macroscopic Signatures of Gauge-Mediated Contagion: Deriving Behavioral Shielding from Stochastic Field Theory 2026-03-31 q-bio.PE;stat.AP q-bio.PE https://arxiv.org/abs/2604.00153 False False 2604.00243 UCell: rethinking generalizability and scaling of bio-medical vision models 2026-03-31 cs.CV;q-bio.QM q-bio.QM https://arxiv.org/abs/2604.00243 False False 2604.00246 Harmonization mitigates diffusion MRI scanner effects in infancy: insights from the HEALthy Brain and Childhood Development (HBCD) study 2026-03-31 eess.IV;q-bio.QM q-bio.QM https://arxiv.org/abs/2604.00246 False False 2604.00251 Evaluation of neuroCombat and deep learning harmonization for multi-site magnetic resonance neuroimaging in youth with prenatal alcohol exposure 2026-03-31 eess.IV;q-bio.QM q-bio.QM https://arxiv.org/abs/2604.00251 False False 2603.29727 Latent-Y: A Lab-Validated Autonomous Agent for De Novo Drug Design 2026-03-31 q-bio.BM q-bio.BM https://arxiv.org/abs/2603.29727 False False 2604.08587 Covariant quantum error correction in a three-layer quantum brain model: computational analysis of layer-specific coherence dynamics 2026-03-31 physics.bio-ph;physics.quant-ph;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.08587 False False 2604.08587 Covariant quantum error correction in a three-layer quantum brain model: computational analysis of layer-specific coherence dynamics 2026-03-31 physics.bio-ph;physics.quant-ph;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.08587 False False 2604.08587 Covariant quantum error correction in a three-layer quantum brain model: computational analysis of layer-specific coherence dynamics 2026-03-31 physics.bio-ph;physics.quant-ph;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.08587 False False 2603.29977 Quantifying Cross-Modal Interactions in Multimodal Glioma Survival Prediction via InterSHAP: Evidence for Additive Signal Integration 2026-03-31 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2603.29977 False False 2603.29977 Quantifying Cross-Modal Interactions in Multimodal Glioma Survival Prediction via InterSHAP: Evidence for Additive Signal Integration 2026-03-31 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2603.29977 False False 2603.29617 Convergent Representations of Linguistic Constructions in Human and Artificial Neural Systems 2026-03-31 cs.AI;cs.CL;q-bio.NC q-bio.NC https://arxiv.org/abs/2603.29617 False False 2603.29617 Convergent Representations of Linguistic Constructions in Human and Artificial Neural Systems 2026-03-31 cs.AI;cs.CL;q-bio.NC q-bio.NC https://arxiv.org/abs/2603.29617 False False 2603.27926 Allocentric Navigation Is Computationally Universal 2026-03-30 q-bio.NC q-bio.NC https://arxiv.org/abs/2603.27926 False False 2603.28200 A Deep Reinforcement Learning Framework for Closed-loop Guidance of Fish Schools via Virtual Agents 2026-03-30 cs.LG;cs.RO;q-bio.PE q-bio.PE https://arxiv.org/abs/2603.28200 False False 2603.28285 Global stability and uniform persistence in an epidemic model with saturating fomite-mediated transmission 2026-03-30 math.DS;q-bio.PE q-bio.PE https://arxiv.org/abs/2603.28285 False False 2603.28464 Will a time-varying complex system be stable? 2026-03-30 physics.dis-nn;physics.stat-mech;q-bio.PE q-bio.PE https://arxiv.org/abs/2603.28464 False False 2603.28600 A Normative Theory of Decision Making from Multiple Stimuli: The Contextual Diffusion Decision Model 2026-03-30 q-bio.NC q-bio.NC https://arxiv.org/abs/2603.28600 False False 2603.28930 Retrospective Economic Evaluation of Group Testing in the COVID-19 Pandemic 2026-03-30 econ.EM;econ.GN;q-bio.QM;q-fin.EC;stat.CO q-bio.QM https://arxiv.org/abs/2603.28930 False False 2603.28764 Geometry-aware similarity metrics for neural representations on Riemannian and statistical manifolds 2026-03-30 cs.AI;cs.LG;math.DG;q-bio.NC q-bio.NC https://arxiv.org/abs/2603.28764 False False 2603.27465 Poisoning the Genome: Targeted Backdoor Attacks on DNA Foundation Models 2026-03-29 q-bio.GN q-bio.GN https://arxiv.org/abs/2603.27465 False False 2603.27484 Quantitative mapping of dynamic 3D transport in growing cells via volumetric spatio-temporal image correlation spectroscopy (vSTICS) 2026-03-29 physics.bio-ph;q-bio.QM;q-bio.SC q-bio.QM https://arxiv.org/abs/2603.27484 False False 2603.27597 From indicators to biology: the calibration problem in artificial consciousness 2026-03-29 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2603.27597 False False 2603.27611 What does a system modify when it modifies itself? 2026-03-29 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2603.27611 False False 2603.27644 Energy Landscapes of Emotion: Quantifying Brain Network Stability During Happy and Sad Face Processing Using EEG-Based Hopfield Energy 2026-03-29 q-bio.NC q-bio.NC https://arxiv.org/abs/2603.27644 False False 2603.27716 The role of neuromorphic principles in the future of biomedicine and healthcare 2026-03-29 cs.AI;cs.NE;q-bio.NC q-bio.NC https://arxiv.org/abs/2603.27716 False False 2603.27787 Cardiovascular-Kidney-Metabolic Health: Insights from Wearables and Blood Biomarkers 2026-03-29 q-bio.QM q-bio.QM https://arxiv.org/abs/2603.27787 False False 2603.27465 Poisoning the Genome: Targeted Backdoor Attacks on DNA Foundation Models 2026-03-29 q-bio.GN q-bio.GN https://arxiv.org/abs/2603.27465 False False 2603.27465 Poisoning the Genome: Targeted Backdoor Attacks on DNA Foundation Models 2026-03-29 q-bio.GN q-bio.GN https://arxiv.org/abs/2603.27465 False False 2603.27104 Autonomous Agent-Orchestrated Digital Twins (AADT): Leveraging the OpenClaw Framework for State Synchronization in Rare Genetic Disorders 2026-03-28 cs.AI;cs.IR;q-bio.QM q-bio.QM https://arxiv.org/abs/2603.27104 False False 2603.27145 Pan-Cancer Mapping of the Tumor Immune Landscape through Metagene Clustering and Predictive Modeling 2026-03-28 cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2603.27145 False False 2603.27188 Persistent Memory Through Triple-Loop Consolidation in a Non-Gradient Dissipative Cognitive Architecture 2026-03-28 cs.NE;q-bio.NC q-bio.NC https://arxiv.org/abs/2603.27188 False False 2603.27255 When can fitness epistasis be ignored in a polygenic trait at equilibrium? 2026-03-28 physics.stat-mech;q-bio.PE q-bio.PE https://arxiv.org/abs/2603.27255 False False 2603.27303 Self-evolving AI agents for protein discovery and directed evolution 2026-03-28 cs.AI;cs.CL;q-bio.QM q-bio.QM https://arxiv.org/abs/2603.27303 False False 2603.27347 Information in a recurrent Retina-V1 network with realistic noise, feedback and nonlinearities 2026-03-28 q-bio.NC q-bio.NC https://arxiv.org/abs/2603.27347 False False 2603.27410 Grounding Social Perception in Intuitive Physics 2026-03-28 cs.AI;cs.CV;q-bio.NC q-bio.NC https://arxiv.org/abs/2603.27410 False False 2604.14178 Simulating Human Cognition: Heartbeat-Driven Autonomous Thinking Activity Scheduling for LLM-based AI systems 2026-03-28 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.14178 False False 2604.14178 Simulating Human Cognition: Heartbeat-Driven Autonomous Thinking Activity Scheduling for LLM-based AI systems 2026-03-28 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.14178 False False 2603.25986 Evaluating Phylogenetic Comparative Methods under Reticulate Evolutionary Scenarios 2026-03-27 q-bio.PE;q-bio.QM q-bio.PE https://arxiv.org/abs/2603.25986 False False 2603.25991 Passivity-Based Control of Electrographic Seizures in a Neural Mass Model of Epilepsy 2026-03-27 cs.SY;eess.SY;q-bio.NC q-bio.NC https://arxiv.org/abs/2603.25991 False False 2603.26007 Longitudinal Boundary Sharpness Coefficient Slopes Predict Time to Alzheimer's Disease Conversion in Mild Cognitive Impairment: A Survival Analysis Using the ADNI Cohort 2026-03-27 cs.AI;cs.CV;q-bio.NC q-bio.NC https://arxiv.org/abs/2603.26007 False False 2603.26110 TurboESM: Ultra-Efficient 3-Bit KV Cache Quantization for Protein Language Models with Orthogonal Rotation and QJL Correction 2026-03-27 q-bio.QM q-bio.QM https://arxiv.org/abs/2603.26110 False False 2603.26267 On the RAID dataset of perceptual responses: analysis and statistical causes 2026-03-27 q-bio.NC q-bio.NC https://arxiv.org/abs/2603.26267 False False 2603.26370 Multi-scale Metabolic Modeling and Simulation 2026-03-27 math.DS;math.OC;q-bio.QM q-bio.QM https://arxiv.org/abs/2603.26370 False False 2603.26506 Identifying Connectivity Distributions from Neural Dynamics Using Flows 2026-03-27 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2603.26506 False False 2603.26530 Control of genes by self-organizing multicellular interaction networks 2026-03-27 q-bio.MN q-bio.MN https://arxiv.org/abs/2603.26530 False False 2603.26544 Development of a European Union Time-Indexed Reference Dataset for Assessing the Performance of Signal Detection Methods in Pharmacovigilance using a Large Language Model 2026-03-27 cs.CL;q-bio.QM q-bio.QM https://arxiv.org/abs/2603.26544 False False 2603.26630 Revisiting claims of extracranial biophoton detection from the human brain 2026-03-27 physics.bio-ph;physics.optics;q-bio.NC q-bio.NC https://arxiv.org/abs/2603.26630 False False 2603.26858 A Hierarchical Sheaf Spectral Embedding Framework for Single-Cell RNA-seq Analysis 2026-03-27 cs.LG;math.SP;q-bio.GN;stat.ML q-bio.GN https://arxiv.org/abs/2603.26858 False False 2603.26974 Recent advances in modeling and simulation of biological phenomena in crowded and cellular environments 2026-03-27 q-bio.BM q-bio.BM https://arxiv.org/abs/2603.26974 False False 2603.26994 ImmSET: Sequence-Based Predictor of TCR-pMHC Specificity at Scale 2026-03-27 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2603.26994 False False 2603.26226 Braess's paradox in tandem-running ants: When shortest path is not the quickest 2026-03-27 physics.AO;physics.bio-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2603.26226 False False 2603.27017 Beyond BMI: Smartphone Body Composition Phenotyping for Cardiometabolic Risk Assessment 2026-03-27 q-bio.QM q-bio.QM https://arxiv.org/abs/2603.27017 False False 2603.27017 Beyond BMI: Smartphone Body Composition Phenotyping for Cardiometabolic Risk Assessment 2026-03-27 q-bio.QM q-bio.QM https://arxiv.org/abs/2603.27017 False False 2604.06222 The Geometry of Forgetting 2026-03-27 cs.AI;cs.IR;cs.NE;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.06222 False False 2604.06222 The Geometry of Forgetting 2026-03-27 cs.AI;cs.IR;cs.NE;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.06222 False False 2603.26530 Control of genes by self-organizing multicellular interaction networks 2026-03-27 q-bio.MN q-bio.MN https://arxiv.org/abs/2603.26530 False False 2603.26530 Control of genes by self-organizing multicellular interaction networks 2026-03-27 q-bio.MN q-bio.MN https://arxiv.org/abs/2603.26530 False False 2603.26974 Recent advances in modeling and simulation of biological phenomena in crowded and cellular environments 2026-03-27 q-bio.BM q-bio.BM https://arxiv.org/abs/2603.26974 False False 2603.26974 Recent advances in modeling and simulation of biological phenomena in crowded and cellular environments 2026-03-27 q-bio.BM q-bio.BM https://arxiv.org/abs/2603.26974 False False 2603.26530 Control of genes by self-organizing multicellular interaction networks 2026-03-27 q-bio.MN q-bio.MN https://arxiv.org/abs/2603.26530 False False 2603.26530 Control of genes by self-organizing multicellular interaction networks 2026-03-27 q-bio.MN q-bio.MN https://arxiv.org/abs/2603.26530 False False 2603.26630 Revisiting claims of extracranial biophoton detection from the human brain 2026-03-27 physics.bio-ph;physics.optics;q-bio.NC q-bio.NC https://arxiv.org/abs/2603.26630 False False 2603.26630 Revisiting claims of extracranial biophoton detection from the human brain 2026-03-27 physics.bio-ph;physics.optics;q-bio.NC q-bio.NC https://arxiv.org/abs/2603.26630 False False 2603.26506 Identifying Connectivity Distributions from Neural Dynamics Using Flows 2026-03-27 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2603.26506 False False 2603.26506 Identifying Connectivity Distributions from Neural Dynamics Using Flows 2026-03-27 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2603.26506 False False 2603.25180 Quantifying plasticity: a network-based framework linking structure to dynamical regimes 2026-03-26 physics.AO;physics.bio-ph;physics.dis-nn;physics.stat-mech;q-bio.NC q-bio.NC https://arxiv.org/abs/2603.25180 False False 2603.25239 The Self-Replication Phase Diagram: Mapping Where Life Becomes Possible in Cellular Automata Rule Space 2026-03-26 cs.CC;q-bio.PE q-bio.PE https://arxiv.org/abs/2603.25239 False False 2603.25276 Global Stability Analysis of the Age-Structured Chemostat With Substrate Dynamics 2026-03-26 cs.SY;eess.SY;math.DS;math.OC;q-bio.PE q-bio.PE https://arxiv.org/abs/2603.25276 False False 2603.25283 A Gait Foundation Model Predicts Multi-System Health Phenotypes from 3D Skeletal Motion 2026-03-26 cs.AI;q-bio.QM q-bio.QM https://arxiv.org/abs/2603.25283 False False 2603.25417 Fast Iteration of Spaced k-mers 2026-03-26 cs.DS;q-bio.GN q-bio.GN https://arxiv.org/abs/2603.25417 False False 2603.25444 The Reward Function and the Least Cost Principle for Gravitation and other Laws of Physics 2026-03-26 physics.class-ph;q-bio.NC q-bio.NC https://arxiv.org/abs/2603.25444 False False 2603.25447 Interfacial Permeability, Reflectivity and Preferential Internal Mixing of Phase-Separated Condensates 2026-03-26 physics.bio-ph;physics.soft;q-bio.SC q-bio.SC https://arxiv.org/abs/2603.25447 False False 2603.25455 A Bayesian Gamma-power-mixture survival regression model: predicting the recurrence of prostate cancer post-prostatectomy 2026-03-26 q-bio.QM;stat.AP q-bio.QM https://arxiv.org/abs/2603.25455 False False 2603.25518 Dynamics and stochastic resonance in a mathematical model of bistable phosphorylation and nuclear size control 2026-03-26 math.DS;q-bio.CB q-bio.CB https://arxiv.org/abs/2603.25518 False False 2603.25628 Modeling the mutational dynamics of very short tandem repeats 2026-03-26 q-bio.GN;q-bio.PE q-bio.GN https://arxiv.org/abs/2603.25628 False False 2603.25713 Compiling molecular ultrastructure into neural dynamics 2026-03-26 q-bio.NC;q-bio.QM q-bio.NC https://arxiv.org/abs/2603.25713 False False 2603.25762 QHap: Quantum-Inspired Haplotype Phasing 2026-03-26 physics.quant-ph;q-bio.GN q-bio.GN https://arxiv.org/abs/2603.25762 False False 2603.25880 Spectral Coherence Index: A Model-Free Metric for Protein Structural Ensemble Quality Assessment 2026-03-26 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2603.25880 False False 2603.26809 Dictionary-based Pathology Mining with Hard-instance-assisted Classifier Debiasing for Genetic Biomarker Prediction from WSIs 2026-03-26 cs.CV;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2603.26809 False False 2603.26811 Implicit neural representations for larval zebrafish brain microscopy: a reproducible benchmark on the MapZebrain atlas 2026-03-26 cs.AI;cs.CV;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2603.26811 False False 2603.26822 Modularity, asymmetry, and polarization shape consensus speed in the voter model 2026-03-26 math.DS;physics.soc-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2603.26822 False False 2603.25240 Lingshu-Cell: A generative cellular world model for transcriptome modeling toward virtual cells 2026-03-26 cs.AI;q-bio.GN;q-bio.QM q-bio.GN https://arxiv.org/abs/2603.25240 False False 2603.25762 QHap: Quantum-Inspired Haplotype Phasing 2026-03-26 physics.quant-ph;q-bio.GN q-bio.GN https://arxiv.org/abs/2603.25762 False False 2603.25762 QHap: Quantum-Inspired Haplotype Phasing 2026-03-26 physics.quant-ph;q-bio.GN q-bio.GN https://arxiv.org/abs/2603.25762 False False 2603.25417 Fast Iteration of Spaced k-mers 2026-03-26 cs.DS;q-bio.GN q-bio.GN https://arxiv.org/abs/2603.25417 False False 2603.25417 Fast Iteration of Spaced k-mers 2026-03-26 cs.DS;q-bio.GN q-bio.GN https://arxiv.org/abs/2603.25417 False False 2603.25417 Fast Iteration of Spaced k-mers 2026-03-26 cs.DS;q-bio.GN q-bio.GN https://arxiv.org/abs/2603.25417 False False 2603.25417 Fast Iteration of Spaced k-mers 2026-03-26 cs.DS;q-bio.GN q-bio.GN https://arxiv.org/abs/2603.25417 False False 2603.25180 Quantifying plasticity: a network-based framework linking structure to dynamical regimes 2026-03-26 physics.AO;physics.bio-ph;physics.dis-nn;physics.stat-mech;q-bio.NC q-bio.NC https://arxiv.org/abs/2603.25180 False False 2603.24000 Self-organized pattern synchronization modulated by stochasticity in coupled plankton ecosystems 2026-03-25 physics.PS;physics.bio-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2603.24000 False False 2603.24009 Analyzing animal movement using deep learning 2026-03-25 q-bio.QM;stat.AP q-bio.QM https://arxiv.org/abs/2603.24009 False False 2603.24293 Emergence of unique hues from sparse coding of color in natural scenes 2026-03-25 q-bio.NC q-bio.NC https://arxiv.org/abs/2603.24293 False False 2603.24356 A Metric for Three-Dimensional Color Discrimination Derived from V1 Population Fisher Information 2026-03-25 q-bio.NC q-bio.NC https://arxiv.org/abs/2603.24356 False False 2603.24626 A Large-Scale Comparative Analysis of Imputation Methods for Single-Cell RNA Sequencing Data 2026-03-25 cs.LG;q-bio.GN;stat.ML q-bio.GN https://arxiv.org/abs/2603.24626 False False 2603.24733 OpenCap Monocular: 3D Human Kinematics and Musculoskeletal Dynamics from a Single Smartphone Video 2026-03-25 cs.CV;eess.IV;q-bio.QM q-bio.QM https://arxiv.org/abs/2603.24733 False False 2603.24745 Learning relationships in epidemiological data using graph neural networks 2026-03-25 q-bio.QM q-bio.QM https://arxiv.org/abs/2603.24745 False False 2603.24783 Causal Discovery on Dependent Mixed Data with Applications to Gene Regulatory Network Inference 2026-03-25 q-bio.GN;stat.AP;stat.ME q-bio.GN https://arxiv.org/abs/2603.24783 False False 2603.25755 KANEL: Kolmogorov-Arnold Network Ensemble Learning Enables Early Hit Enrichment in High-Throughput Virtual Screening 2026-03-25 cs.LG;physics.chem-ph;q-bio.QM;stat.ML q-bio.QM https://arxiv.org/abs/2603.25755 False False 2603.24176 Modeling Spatiotemporal Neural Frames for High Resolution Brain Dynamic 2026-03-25 cs.CV;eess.IV;q-bio.NC q-bio.NC https://arxiv.org/abs/2603.24176 False False 2603.24626 A Large-Scale Comparative Analysis of Imputation Methods for Single-Cell RNA Sequencing Data 2026-03-25 cs.LG;q-bio.GN;stat.ML q-bio.GN https://arxiv.org/abs/2603.24626 False False 2603.24626 A Large-Scale Comparative Analysis of Imputation Methods for Single-Cell RNA Sequencing Data 2026-03-25 cs.LG;q-bio.GN;stat.ML q-bio.GN https://arxiv.org/abs/2603.24626 False False 2603.24293 Emergence of unique hues from sparse coding of color in natural scenes 2026-03-25 q-bio.NC q-bio.NC https://arxiv.org/abs/2603.24293 False False 2603.24293 Emergence of unique hues from sparse coding of color in natural scenes 2026-03-25 q-bio.NC q-bio.NC https://arxiv.org/abs/2603.24293 False False 2603.22680 Balancing training load, rest and musculoskeletal injury risk: a mathematical modelling study in Thoroughbred racehorses 2026-03-24 q-bio.PE q-bio.PE https://arxiv.org/abs/2603.22680 False False 2603.22858 The Coordinate System Problem in Persistent Structural Memory for Neural Architectures 2026-03-24 cs.AI;cs.LG;cs.NE;q-bio.NC q-bio.NC https://arxiv.org/abs/2603.22858 False False 2603.22933 An Open-Access Multi-modal Dataset for Cognitive, Motor, and Cognitive-Motor Tasks 2026-03-24 q-bio.NC q-bio.NC https://arxiv.org/abs/2603.22933 False False 2603.23082 Spatial navigation in preclinical Alzheimer's disease: A review 2026-03-24 q-bio.NC q-bio.NC https://arxiv.org/abs/2603.23082 False False 2603.23233 Modeling the Disjunction Effect within Classical Probability: A New Decision Process Model and Comparison with Quantum-like Models 2026-03-24 physics.quant-ph;q-bio.NC q-bio.NC https://arxiv.org/abs/2603.23233 False False 2603.23358 A Synchronous EEG-fNIRS BCI: A Proof-of-Concept for Multimodal Avalanche Analysis of Motor Cognition in Older Adults 2026-03-24 q-bio.NC q-bio.NC https://arxiv.org/abs/2603.23358 False False 2603.23477 Thickness effects in the electromechanical stability of charged biological membranes 2026-03-24 physics.bio-ph;physics.soft;q-bio.SC q-bio.SC https://arxiv.org/abs/2603.23477 False False 2603.22705 Detecting outliers of pursuit eye movements: a preliminary analysis of autism spectrum disorder 2026-03-24 q-bio.NC;q-bio.PE q-bio.NC https://arxiv.org/abs/2603.22705 False False 2603.23583 ZeroFold: Protein-RNA Binding Affinity Predictions from Pre-Structural Embeddings 2026-03-24 cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2603.23583 False False 2603.23775 Interfacial Potential Transduction for Diagnostics 2026-03-24 q-bio.BM q-bio.BM https://arxiv.org/abs/2603.23775 False False 2603.23361 Central Dogma Transformer III: Interpretable AI Across DNA, RNA, and Protein 2026-03-24 cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2603.23361 False False 2603.22705 Detecting outliers of pursuit eye movements: a preliminary analysis of autism spectrum disorder 2026-03-24 q-bio.NC;q-bio.PE q-bio.NC https://arxiv.org/abs/2603.22705 False False 2603.22705 Detecting outliers of pursuit eye movements: a preliminary analysis of autism spectrum disorder 2026-03-24 q-bio.NC;q-bio.PE q-bio.NC https://arxiv.org/abs/2603.22705 False False 2603.22705 Detecting outliers of pursuit eye movements: a preliminary analysis of autism spectrum disorder 2026-03-24 q-bio.NC;q-bio.PE q-bio.NC https://arxiv.org/abs/2603.22705 False False 2603.22705 Detecting outliers of pursuit eye movements: a preliminary analysis of autism spectrum disorder 2026-03-24 q-bio.NC;q-bio.PE q-bio.NC https://arxiv.org/abs/2603.22705 False False 2603.22705 Detecting outliers of pursuit eye movements: a preliminary analysis of autism spectrum disorder 2026-03-24 q-bio.NC;q-bio.PE q-bio.NC https://arxiv.org/abs/2603.22705 False False 2603.23082 Spatial navigation in preclinical Alzheimer's disease: A review 2026-03-24 q-bio.NC q-bio.NC https://arxiv.org/abs/2603.23082 False False 2603.21503 Persistent local Laplacian prediction of protein-ligand binding affinities 2026-03-23 q-bio.BM q-bio.BM https://arxiv.org/abs/2603.21503 False False 2603.21542 Brain Learning Principles Utilizing Non-Ideal Factors in Neural Circuits 2026-03-23 q-bio.NC q-bio.NC https://arxiv.org/abs/2603.21542 False False 2603.21634 Individual-based stochastic model with unbounded growth, birth and death rates: a tightness result 2026-03-23 math.PR;q-bio.PE q-bio.PE https://arxiv.org/abs/2603.21634 False False 2603.21919 Mechanical stress induced by the polymerisation of an active gel near a surface 2026-03-23 physics.soft;q-bio.SC q-bio.SC https://arxiv.org/abs/2603.21919 False False 2603.22150 Epidemic reproduction numbers in spatial networks 2026-03-23 physics.soc-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2603.22150 False False 2603.22269 Computational modeling of RNA-protein binding interactions under an external force 2026-03-23 q-bio.BM q-bio.BM https://arxiv.org/abs/2603.22269 False False 2603.22369 SynLeaF: A Dual-Stage Multimodal Fusion Framework for Synthetic Lethality Prediction Across Pan- and Single-Cancer Contexts 2026-03-23 cs.AI;cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2603.22369 False False 2603.22399 Latent Style-based Quantum Wasserstein GAN for Drug Design 2026-03-23 cs.AI;cs.LG;physics.quant-ph;q-bio.BM q-bio.BM https://arxiv.org/abs/2603.22399 False False 2603.22477 Subspace Tensor Orthogonal Rotation Model (STORM) for Batch Alignment, Cell Type Deconvolution, and Gene Imputation in Spatial Transcriptomic Data 2026-03-23 q-bio.QM q-bio.QM https://arxiv.org/abs/2603.22477 False False 2603.22498 Modelling SARS-CoV-2 epidemics via compartmental and cellular automaton SEIRS model with temporal immunity and vaccination 2026-03-23 q-bio.PE q-bio.PE https://arxiv.org/abs/2603.22498 False False 2603.21743 CellFluxRL: Biologically-Constrained Virtual Cell Modeling via Reinforcement Learning 2026-03-23 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2603.21743 False False 2603.21919 Mechanical stress induced by the polymerisation of an active gel near a surface 2026-03-23 physics.soft;q-bio.SC q-bio.SC https://arxiv.org/abs/2603.21919 False False 2603.21919 Mechanical stress induced by the polymerisation of an active gel near a surface 2026-03-23 physics.soft;q-bio.SC q-bio.SC https://arxiv.org/abs/2603.21919 False False 2603.21743 CellFluxRL: Biologically-Constrained Virtual Cell Modeling via Reinforcement Learning 2026-03-23 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2603.21743 False False 2603.21743 CellFluxRL: Biologically-Constrained Virtual Cell Modeling via Reinforcement Learning 2026-03-23 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2603.21743 False False 2603.20988 Can we automatize scientific discovery in the cognitive sciences? 2026-03-22 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2603.20988 False False 2603.21020 Characterizing Long-Range Dependencies in Knee Joint Contact Mechanics: A Comparison of Topology Diffusion, Global Routing, and Hybrid Graph Neural Networks 2026-03-22 q-bio.QM q-bio.QM https://arxiv.org/abs/2603.21020 False False 2603.21025 Pattern Formation in a Spatial Public Goods Dilemma due to Diffusive or Directed Motion 2026-03-22 q-bio.PE q-bio.PE https://arxiv.org/abs/2603.21025 False False 2603.21201 A harmonized benchmarking framework for implementation-aware evaluation of 46 polygenic risk score tools across binary and continuous phenotypes 2026-03-22 q-bio.GN q-bio.GN https://arxiv.org/abs/2603.21201 False False 2603.22357 Bridging neuroscience and AI: adaptive, culturally sensitive technologies transforming aphasia rehabilitation 2026-03-22 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2603.22357 False False 2603.20998 The survival of the weakest in a biased donation game 2026-03-22 cs.GT;physics.CG;physics.stat-mech;q-bio.PE q-bio.PE https://arxiv.org/abs/2603.20998 False False 2604.00036 When and Where: A Model Hippocampal Network Unifies Formation of Time Cells and Place Cells 2026-03-22 cs.AI;cs.LG;cs.NE;physics.bio-ph;q-bio.NC q-bio.NC https://arxiv.org/abs/2604.00036 False False 2603.20680 Hierarchical Multiscale Structure-Function Coupling for Brain Connectome Integration 2026-03-21 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2603.20680 False False 2603.20707 Coexistence coalitions in propagule disperser quasi-communities 2026-03-21 q-bio.PE q-bio.PE https://arxiv.org/abs/2603.20707 False False 2603.20756 A sub-Riemannian model of the motor cortex with Wasserstein distance 2026-03-21 q-bio.NC q-bio.NC https://arxiv.org/abs/2603.20756 False False 2603.20848 GOLDMARK: Governed Outcome-Linked Diagnostic Model Assessment Reference Kit 2026-03-21 cs.CE;cs.CV;q-bio.TO q-bio.TO https://arxiv.org/abs/2603.20848 False False 2603.20706 Coevolutionary dynamics of cooperation, risk, and cost in collective risk games 2026-03-21 math.DS;physics.AO;q-bio.PE q-bio.PE https://arxiv.org/abs/2603.20706 False False 2603.20922 Spectral Geometry and Heat Kernels on Phylogenetic Trees 2026-03-21 math.PR;math.SP;q-bio.PE q-bio.PE https://arxiv.org/abs/2603.20922 False False 2603.20756 A sub-Riemannian model of the motor cortex with Wasserstein distance 2026-03-21 q-bio.NC q-bio.NC https://arxiv.org/abs/2603.20756 False False 2603.19577 Stochastic Averaging and Statistical Inference of Glycolytic Pathway 2026-03-20 math.PR;q-bio.QM;stat.ME q-bio.QM https://arxiv.org/abs/2603.19577 False False 2603.19690 A Unified Phase-native Computational Principle Governs Hippocampal Spike Timing and Neural Coding 2026-03-20 cs.NE;q-bio.NC q-bio.NC https://arxiv.org/abs/2603.19690 False False 2603.19723 Modelling the passive and active response of skeletal muscles within the adapted Voigt representation framework 2026-03-20 physics.soft;q-bio.TO q-bio.TO https://arxiv.org/abs/2603.19723 False False 2603.19751 Branched Optimal Transport for Stimulus to Reaction Brain Mapping 2026-03-20 math.OC;q-bio.NC;q-bio.QM q-bio.NC https://arxiv.org/abs/2603.19751 False False 2603.19761 Multimodal branched transport infers anatomically aligned brain reaction maps 2026-03-20 math.OC;q-bio.NC;q-bio.QM q-bio.NC https://arxiv.org/abs/2603.19761 False False 2603.19881 Problem difficulty and waiting time shape the level of detail and temporal organization of visual strategies in human planning 2026-03-20 q-bio.NC q-bio.NC https://arxiv.org/abs/2603.19881 False False 2603.20115 Conditioning Protein Generation via Hopfield Pattern Multiplicity 2026-03-20 cs.LG;q-bio.BM;q-bio.QM q-bio.BM https://arxiv.org/abs/2603.20115 False False 2603.20345 Towards Improved Short-term Hypoglycemia Prediction and Diabetes Management based on Refined Heart Rate Data 2026-03-20 q-bio.QM;stat.AP q-bio.QM https://arxiv.org/abs/2603.20345 False False 2603.20346 G2DR: A Genotype-First Framework for Genetics-Informed Target Prioritization and Drug Repurposing 2026-03-20 cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2603.20346 False False 2603.20420 CERN: Correcting Errors in Raw Nanopore Signals Using Hidden Markov Models 2026-03-20 cs.LG;q-bio.GN;q-bio.QM q-bio.GN https://arxiv.org/abs/2603.20420 False False 2603.20469 Entropy and Information is Transferred from Peripherical Sites to the Catalytic Sites of Enzymes 2026-03-20 q-bio.BM q-bio.BM https://arxiv.org/abs/2603.20469 False False 2603.20476 Transcranial Alternating Current Stimulation (tACS) for patients with Post-Stroke Anomia: Preliminary Data on Picture Naming Performance 2026-03-20 q-bio.NC q-bio.NC https://arxiv.org/abs/2603.20476 False False 2603.19814 Stability analysis and long-time convergence of a partial differential equation model of two-phase ageing 2026-03-20 math.AP;math.DS;q-bio.PE q-bio.PE https://arxiv.org/abs/2603.19814 False False 2603.22330 Fair splits flip the leaderboard: CHANRG reveals limited generalization in RNA secondary-structure prediction 2026-03-20 cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2603.22330 False False 2603.19761 Multimodal branched transport infers anatomically aligned brain reaction maps 2026-03-20 math.OC;q-bio.NC;q-bio.QM q-bio.NC https://arxiv.org/abs/2603.19761 False False 2603.20476 Transcranial Alternating Current Stimulation (tACS) for patients with Post-Stroke Anomia: Preliminary Data on Picture Naming Performance 2026-03-20 eess.SP;q-bio.NC q-bio.NC https://arxiv.org/abs/2603.20476 False False 2603.20476 Transcranial Alternating Current Stimulation (tACS) for patients with Post-Stroke Anomia: Preliminary Data on Picture Naming Performance 2026-03-20 eess.SP;q-bio.NC q-bio.NC https://arxiv.org/abs/2603.20476 False False 2603.20420 CRANE: Correcting Errors in Raw Nanopore Signals Using Hidden Markov Models 2026-03-20 cs.LG;q-bio.GN;q-bio.QM q-bio.GN https://arxiv.org/abs/2603.20420 False False 2603.20420 CRANE: Correcting Errors in Raw Nanopore Signals Using Hidden Markov Models 2026-03-20 cs.LG;q-bio.GN;q-bio.QM q-bio.GN https://arxiv.org/abs/2603.20420 False False 2603.20115 Conditioning Protein Generation via Hopfield Pattern Multiplicity 2026-03-20 cs.LG;q-bio.BM;q-bio.QM q-bio.BM https://arxiv.org/abs/2603.20115 False False 2603.20115 Conditioning Protein Generation via Hopfield Pattern Multiplicity 2026-03-20 cs.LG;q-bio.BM;q-bio.QM q-bio.BM https://arxiv.org/abs/2603.20115 False False 2603.18497 Recovering Sparse Neural Connectivity from Partial Measurements: A Covariance-Based Approach with Granger-Causality Refinement 2026-03-19 cs.NE;q-bio.QM q-bio.QM https://arxiv.org/abs/2603.18497 False False 2603.18571 CAPSUL: A Comprehensive Human Protein Benchmark for Subcellular Localization 2026-03-19 cs.AI;cs.CE;q-bio.QM q-bio.QM https://arxiv.org/abs/2603.18571 False False 2603.18801 Interplay between evolutionary and epidemic time scales challenges the outcome of control policies 2026-03-19 q-bio.PE q-bio.PE https://arxiv.org/abs/2603.18801 False False 2603.19115 BSTModelKit.jl: A Julia Package for Constructing, Solving, and Analyzing Biochemical Systems Theory Models 2026-03-19 cs.MS;q-bio.MN q-bio.MN https://arxiv.org/abs/2603.19115 False False 2603.19139 Hierarchical Latent Structure Learning through Online Inference 2026-03-19 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2603.19139 False False 2603.18475 Resolving the Blow-Up: A Time-Dilated Numerical Framework for Multiple Firing Events in Mean-Field Neuronal Networks 2026-03-19 cs.NA;math.AP;math.NA;q-bio.NC q-bio.NC https://arxiv.org/abs/2603.18475 False False 2603.19341 Assessing 3D tree model quality and species classification using imbalance indices 2026-03-19 math.CO;q-bio.QM q-bio.QM https://arxiv.org/abs/2603.19341 False False 2603.19425 Curvature Sensitive Cells in the Modular Structures of The Visual Cortex 2026-03-19 math.DG;math.FA;q-bio.NC q-bio.NC https://arxiv.org/abs/2603.19425 False False 2603.19473 Reinforcement-guided generative protein language models enable de novo design of highly diverse AAV capsids 2026-03-19 cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2603.19473 False False 2603.20312 Broad presence of ferromagnetism in bees and relationship to phylogeny, natural history, and sociality 2026-03-19 physics.mes-hall;physics.mtrl-sci;q-bio.PE q-bio.PE https://arxiv.org/abs/2603.20312 False False 2603.20321 GIP-RAG: An Evidence-Grounded Retrieval-Augmented Framework for Interpretable Gene Interaction and Pathway Impact Analysis 2026-03-19 cs.AI;cs.CL;q-bio.MN q-bio.MN https://arxiv.org/abs/2603.20321 False False 2603.22311 Ca2+ transient detection and segmentation with the Astronomically motivated algorithm for Background Estimation And Transient Segmentation (Astro-BEATS) 2026-03-19 cs.CV;physics.IM;q-bio.NC q-bio.NC https://arxiv.org/abs/2603.22311 False False 2603.18385 Evolutionarily Stable Stackelberg Equilibrium 2026-03-19 cs.AI;cs.GT;cs.MA;econ.TH;q-bio.PE q-bio.PE https://arxiv.org/abs/2603.18385 False False 2603.20312 Broad presence of ferromagnetism in bees and relationship to phylogeny, natural history, and sociality 2026-03-19 physics.mes-hall;physics.mtrl-sci;q-bio.PE q-bio.PE https://arxiv.org/abs/2603.20312 False False 2603.20312 Broad presence of ferromagnetism in bees and relationship to phylogeny, natural history, and sociality 2026-03-19 physics.mes-hall;physics.mtrl-sci;q-bio.PE q-bio.PE https://arxiv.org/abs/2603.20312 False False 2603.18385 Evolutionarily Stable Stackelberg Equilibrium 2026-03-19 cs.AI;cs.GT;cs.MA;econ.TH;q-bio.PE q-bio.PE https://arxiv.org/abs/2603.18385 False False 2603.18385 Evolutionarily Stable Stackelberg Equilibrium 2026-03-19 cs.AI;cs.GT;cs.MA;econ.TH;q-bio.PE q-bio.PE https://arxiv.org/abs/2603.18385 False False 2603.18385 Evolutionarily Stable Stackelberg Equilibrium 2026-03-19 cs.AI;cs.GT;cs.MA;econ.TH;q-bio.PE q-bio.PE https://arxiv.org/abs/2603.18385 False False 2603.18385 Evolutionarily Stable Stackelberg Equilibrium 2026-03-19 cs.AI;cs.GT;cs.MA;econ.TH;q-bio.PE q-bio.PE https://arxiv.org/abs/2603.18385 False False 2603.19139 Hierarchical Latent Structure Learning through Online Inference 2026-03-19 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2603.19139 False False 2603.19139 Hierarchical Latent Structure Learning through Online Inference 2026-03-19 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2603.19139 False False 2603.17247 Binary Latent Protein Fitness Landscapes for Quantum Annealing Optimization 2026-03-18 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2603.17247 False False 2603.17251 Integrative modelling of protein-glycan interactions with HADDOCK3 2026-03-18 q-bio.BM q-bio.BM https://arxiv.org/abs/2603.17251 False False 2603.17392 Agentic Cognitive Profiling: Realigning Automated Alzheimer's Disease Detection with Clinical Construct Validity 2026-03-18 cs.IR;cs.MA;q-bio.NC q-bio.NC https://arxiv.org/abs/2603.17392 False False 2603.17601 An optimal control approach to nonlinear wave speed selection in reaction-diffusion equations 2026-03-18 math.AP;math.OC;q-bio.TO q-bio.TO https://arxiv.org/abs/2603.17601 False False 2603.17633 Atomic Trajectory Modeling with State Space Models for Biomolecular Dynamics 2026-03-18 cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2603.17633 False False 2603.17676 Inhibitory normalization of error signals improves learning in neural circuits 2026-03-18 cs.AI;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2603.17676 False False 2603.17754 Slow evolution towards generalism in a model of variable dietary range 2026-03-18 q-bio.PE q-bio.PE https://arxiv.org/abs/2603.17754 False False 2603.17947 Unified Policy Value Decomposition for Rapid Adaptation 2026-03-18 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2603.17947 False False 2603.18076 Generative Replica-Exchange: A Flow-based Framework for Accelerating Replica Exchange Simulations 2026-03-18 cs.LG;physics.comp-ph;q-bio.BM q-bio.BM https://arxiv.org/abs/2603.18076 False False 2603.18081 Genetic determinism of circadian rhythm of feed intake and relation with feed efficiency evaluated in group-housed growing Large White pigs 2026-03-18 q-bio.PE q-bio.PE https://arxiv.org/abs/2603.18081 False False 2603.18239 Impact of automatic speech recognition quality on Alzheimer's disease detection from spontaneous speech: a reproducible benchmark study with lexical modeling and statistical validation 2026-03-18 cs.CL;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2603.18239 False False 2603.18249 RAFT-UP: Robust Alignment for Spatial Transcriptomics with Explicit Control of Spatial Distortion 2026-03-18 math.OC;q-bio.QM q-bio.QM https://arxiv.org/abs/2603.18249 False False 2603.17380 SCALE:Scalable Conditional Atlas-Level Endpoint transport for virtual cell perturbation prediction 2026-03-18 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2603.17380 False False 2603.17306 Beyond bouba/kiki: Multidimensional semantic signals are deeply woven into the fabric of natural language 2026-03-18 cs.CL;q-bio.NC q-bio.NC https://arxiv.org/abs/2603.17306 False False 2603.17765 Grounded Multimodal Retrieval-Augmented Drafting of Radiology Impressions Using Case-Based Similarity Search 2026-03-18 cs.AI;cs.CV;q-bio.QM q-bio.QM https://arxiv.org/abs/2603.17765 False False 2603.19326 Mathematical Modeling of Cancer-Bacterial Therapy: Analysis and Numerical Simulation via Physics-Informed Neural Networks 2026-03-18 cs.LG;cs.NA;math.AP;math.NA;q-bio.QM q-bio.QM https://arxiv.org/abs/2603.19326 False False 2603.17765 Grounded Multimodal Retrieval-Augmented Drafting of Radiology Impressions Using Case-Based Similarity Search 2026-03-18 cs.AI;cs.CV;q-bio.QM q-bio.QM https://arxiv.org/abs/2603.17765 False False 2603.18239 Impact of automatic speech recognition quality on Alzheimer's disease detection from spontaneous speech: a reproducible benchmark study with lexical modeling and statistical validation 2026-03-18 cs.CL;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2603.18239 False False 2603.17754 Slow evolution towards generalism in a model of variable dietary range 2026-03-18 q-bio.PE q-bio.PE https://arxiv.org/abs/2603.17754 False False 2603.17754 Slow evolution towards generalism in a model of variable dietary range 2026-03-18 q-bio.PE q-bio.PE https://arxiv.org/abs/2603.17754 False False 2603.17306 Evidence for systematic semantic structure in individual phonemes 2026-03-18 cs.CL;q-bio.NC q-bio.NC https://arxiv.org/abs/2603.17306 False False 2603.17306 Evidence for systematic semantic structure in individual phonemes 2026-03-18 cs.CL;q-bio.NC q-bio.NC https://arxiv.org/abs/2603.17306 False False 2603.16064 Evaluating Targeted Mobility Restrictions on COVID-19 Transmission in Seoul: A Metapopulation Modeling Study Using Mobile Phone Data 2026-03-17 q-bio.PE q-bio.PE https://arxiv.org/abs/2603.16064 False False 2603.16178 Early Pre-Stroke Detection via Wearable IMU-Based Gait Variability and Postural Drift Analysis 2026-03-17 q-bio.NC q-bio.NC https://arxiv.org/abs/2603.16178 False False 2603.16185 Sample-Efficient Adaptation of Drug-Response Models to Patient Tumors under Strong Biological Domain Shift 2026-03-17 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2603.16185 False False 2603.16194 TPMM: Three-component Posterior Mixture Model Enables Robust Inverton Detection in Low-Depth Metagenomes and Suggests Potential Viral Invertons 2026-03-17 q-bio.GN q-bio.GN https://arxiv.org/abs/2603.16194 False False 2603.16281 Laya: A LeJEPA Approach to EEG via Latent Prediction over Reconstruction 2026-03-17 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2603.16281 False False 2603.16288 Hippocampus mediates conceptual generalization of pain modulation 2026-03-17 q-bio.NC q-bio.NC https://arxiv.org/abs/2603.16288 False False 2603.16384 Controlling Fish Schools via Reinforcement Learning of Virtual Fish Movement 2026-03-17 cs.LG;cs.RO;q-bio.PE q-bio.PE https://arxiv.org/abs/2603.16384 False False 2603.16501 The immediate effect of kangaroo mother care on Mother-infant inter-brain synchrony and infant brain function 2026-03-17 q-bio.NC q-bio.NC https://arxiv.org/abs/2603.16501 False False 2603.16562 Understanding Cell Fate Decisions with Temporal Attention 2026-03-17 cs.CV;q-bio.CB;q-bio.QM q-bio.CB https://arxiv.org/abs/2603.16562 False False 2603.16587 HistoAtlas: A Pan-Cancer Morphology Atlas Linking Histomics to Molecular Programs and Clinical Outcomes 2026-03-17 cs.CV;eess.IV;q-bio.QM q-bio.QM https://arxiv.org/abs/2603.16587 False False 2603.16741 Bayesian Inference of Psychometric Variables From Brain and Behavior in Implicit Association Tests 2026-03-17 cs.LG;q-bio.NC;q-bio.QM;stat.ML q-bio.NC https://arxiv.org/abs/2603.16741 False False 2603.16770 Training a force field for proteins and small molecules from scratch 2026-03-17 q-bio.BM q-bio.BM https://arxiv.org/abs/2603.16770 False False 2603.16773 Age-dependent distribution of officially reported cases of vector-borne infections 2026-03-17 q-bio.PE q-bio.PE https://arxiv.org/abs/2603.16773 False False 2603.16789 Conservative Continuous-Time Treatment Optimization 2026-03-17 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2603.16789 False False 2603.16801 A low-data, low-cost, and open-source workflow for 3D printing lithographs for digital accessibility of microscopy images 2026-03-17 cs.GR;q-bio.TO q-bio.TO https://arxiv.org/abs/2603.16801 False False 2603.16957 Non-perturbative Bacterial Identification Directly from Solid Agar Plates Using Raman 2026-03-17 q-bio.BM;q-bio.QM q-bio.BM https://arxiv.org/abs/2603.16957 False False 2603.16963 Topology-Guided Biomechanical Profiling: A White-Box Framework for Opportunistic Screening of Spinal Instability on Routine CT 2026-03-17 cs.CV;q-bio.QM q-bio.QM https://arxiv.org/abs/2603.16963 False False 2603.16984 Intermitotic timing and motility patterns in the cell division of the diatom Seminavis robusta 2026-03-17 q-bio.QM q-bio.QM https://arxiv.org/abs/2603.16984 False False 2603.17026 Sympatric speciation by symmetry-breaking: The three-clade case 2026-03-17 q-bio.PE q-bio.PE https://arxiv.org/abs/2603.17026 False False 2603.17090 Intracellular Measurement-Informed Multiscale Modeling for Scalable iPSC Manufacturing 2026-03-17 q-bio.CB q-bio.CB https://arxiv.org/abs/2603.17090 False False 2603.17191 Tabular LLMs for Interpretable Few-Shot Alzheimer's Disease Prediction with Multimodal Biomedical Data 2026-03-17 cs.CL;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2603.17191 False False 2603.26705 PI-Mamba: Linear-Time Protein Backbone Generation via Spectrally Initialized Flow Matching 2026-03-17 cs.AI;cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2603.26705 False False 2603.26707 The Cognitive Divergence: AI Context Windows, Human Attention Decline, and the Delegation Feedback Loop 2026-03-17 cs.AI;cs.CL;cs.CY;cs.HC;q-bio.NC q-bio.NC https://arxiv.org/abs/2603.26707 False False 2603.26708 Fractional epidemics from quantum loops 2026-03-17 physics.stat-mech;q-bio.PE q-bio.PE https://arxiv.org/abs/2603.26708 False False 2603.16281 Laya: A LeJEPA Approach to EEG via Latent Prediction over Reconstruction 2026-03-17 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2603.16281 False False 2603.16281 Laya: A LeJEPA Approach to EEG via Latent Prediction over Reconstruction 2026-03-17 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2603.16281 False False 2603.16801 TAMP-OS: An Open-Source Workflow for Tactile 3D-Printable Lithographs 2026-03-17 cs.GR;q-bio.TO q-bio.TO https://arxiv.org/abs/2603.16801 False False 2603.16801 TAMP-OS: An Open-Source Workflow for Tactile 3D-Printable Lithographs 2026-03-17 cs.GR;q-bio.TO q-bio.TO https://arxiv.org/abs/2603.16801 False False 2603.26705 PI-Mamba: Linear-Time Protein Backbone Generation via Spectrally Initialized Flow Matching 2026-03-17 cs.AI;cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2603.26705 False False 2603.26705 PI-Mamba: Linear-Time Protein Backbone Generation via Spectrally Initialized Flow Matching 2026-03-17 cs.AI;cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2603.26705 False False 2603.17090 Intracellular Measurement-Informed Multiscale Modeling for Scalable iPSC Manufacturing 2026-03-17 q-bio.CB q-bio.CB https://arxiv.org/abs/2603.17090 False False 2603.17090 Intracellular Measurement-Informed Multiscale Modeling for Scalable iPSC Manufacturing 2026-03-17 q-bio.CB q-bio.CB https://arxiv.org/abs/2603.17090 False False 2603.16770 Training a force field for proteins and small molecules from scratch 2026-03-17 q-bio.BM q-bio.BM https://arxiv.org/abs/2603.16770 False False 2603.16770 Training a force field for proteins and small molecules from scratch 2026-03-17 q-bio.BM q-bio.BM https://arxiv.org/abs/2603.16770 False False 2603.16801 TAMP-OS: An Open-Source Workflow for Tactile 3D-Printable Lithographs 2026-03-17 cs.GR;q-bio.TO q-bio.TO https://arxiv.org/abs/2603.16801 False False 2603.16801 TAMP-OS: An Open-Source Workflow for Tactile 3D-Printable Lithographs 2026-03-17 cs.GR;q-bio.TO q-bio.TO https://arxiv.org/abs/2603.16801 False False 2603.14711 Household Bubbling Strategies for Epidemic Control and Social Connectivity 2026-03-16 physics.soc-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2603.14711 False False 2603.14806 Fold-CP: A Context Parallelism Framework for Biomolecular Modeling 2026-03-16 cs.DC;cs.LG;q-bio.BM;q-bio.QM q-bio.BM https://arxiv.org/abs/2603.14806 False False 2603.15006 Empowering Chemical Structures with Biological Insights for Scalable Phenotypic Virtual Screening 2026-03-16 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2603.15006 False False 2603.15052 Diverse communities promote the coexistence of closely-related strains through emergent equalization and stabilization 2026-03-16 physics.AO;physics.stat-mech;q-bio.PE q-bio.PE https://arxiv.org/abs/2603.15052 False False 2603.15171 A mechanical bifurcation constrains the evolution of cell sheet folding in the family Volvocaceae 2026-03-16 physics.bio-ph;physics.soft;q-bio.TO q-bio.TO https://arxiv.org/abs/2603.15171 False False 2603.15198 Geometric framework for biological evolution 2026-03-16 cs.LG;q-bio.PE q-bio.PE https://arxiv.org/abs/2603.15198 False False 2603.15208 BCMI-Driven Motion Control Detection: EEG-Based Machine Learning and Interaction Entropy for High-Order Brain Networks 2026-03-16 q-bio.NC q-bio.NC https://arxiv.org/abs/2603.15208 False False 2603.15339 The Neuroscience of Transformers 2026-03-16 q-bio.NC;q-bio.SC;q-bio.TO q-bio.NC https://arxiv.org/abs/2603.15339 False False 2603.15390 Hecate: A Modular Genomic Compressor 2026-03-16 cs.DS;q-bio.GN q-bio.GN https://arxiv.org/abs/2603.15390 False False 2603.15175 Bayesian Inference in Epidemic Modelling: A Beginner's Guide 2026-03-16 math.DS;q-bio.PE;stat.ME q-bio.PE https://arxiv.org/abs/2603.15175 False False 2603.15702 Whole slide and microscopy image analysis with QuPath and OMERO 2026-03-16 q-bio.QM q-bio.QM https://arxiv.org/abs/2603.15702 False False 2603.15711 Knowledge Graph Extraction from Biomedical Literature for Alkaptonuria Rare Disease 2026-03-16 cs.AI;cs.IR;q-bio.QM q-bio.QM https://arxiv.org/abs/2603.15711 False False 2603.15217 A multiscale discrete-to-continuum framework for structured population models 2026-03-16 math.DS;q-bio.PE;q-bio.QM q-bio.PE https://arxiv.org/abs/2603.15217 False False 2603.16942 UNICORN: Ultrasound Nakagami Imaging via Score Matching and Adaptation for Assessing Hepatic Steatosis 2026-03-16 cs.AI;cs.CV;eess.IV;q-bio.QM q-bio.QM https://arxiv.org/abs/2603.16942 False False 2603.15080 Open Biomedical Knowledge Graphs at Scale: Construction, Federation, and AI Agent Access with Samyama Graph Database 2026-03-16 cs.AI;cs.DB;q-bio.QM q-bio.QM https://arxiv.org/abs/2603.15080 False False 2603.19320 Analytically tractable model of synaptic crowding explains emergent small-world structure and network dynamics 2026-03-16 cs.NE;cs.SI;physics.dis-nn;q-bio.NC q-bio.NC https://arxiv.org/abs/2603.19320 False False 2603.22297 Black Hole-Inspired Horizon Model for Neural Signal Dynamics 2026-03-16 physics.bio-ph;q-bio.NC q-bio.NC https://arxiv.org/abs/2603.22297 False False 2603.14691 A Unified Variational Principle for Branching Transport Networks: Wave Impedance, Viscous Flow, and Tissue Metabolism 2026-03-16 physics.bio-ph;physics.soft;q-bio.TO q-bio.TO https://arxiv.org/abs/2603.14691 False False 2603.22297 Black Hole-Inspired Horizon Model for Neural Signal Dynamics 2026-03-16 physics.bio-ph;q-bio.NC q-bio.NC https://arxiv.org/abs/2603.22297 False False 2603.22297 Black Hole-Inspired Horizon Model for Neural Signal Dynamics 2026-03-16 physics.bio-ph;q-bio.NC q-bio.NC https://arxiv.org/abs/2603.22297 False False 2603.14711 Household Bubbling Strategies for Epidemic Control and Social Connectivity 2026-03-16 physics.soc-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2603.14711 False False 2603.14711 Household Bubbling Strategies for Epidemic Control and Social Connectivity 2026-03-16 physics.soc-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2603.14711 False False 2603.14711 Household Bubbling Strategies for Epidemic Control and Social Connectivity 2026-03-16 physics.soc-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2603.14711 False False 2603.14711 Household Bubbling Strategies for Epidemic Control and Social Connectivity 2026-03-16 physics.soc-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2603.14711 False False 2603.14161 Deep probabilistic model synthesis enables unified modeling of whole-brain neural activity across individual subjects 2026-03-15 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2603.14161 False False 2603.14312 Autonomous Agents Coordinating Distributed Discovery Through Emergent Artifact Exchange 2026-03-15 cs.AI;cs.LG;cs.MA;physics.dis-nn;q-bio.BM q-bio.BM https://arxiv.org/abs/2603.14312 False False 2603.14395 Tracking Carbapenem-Resistant Pathogens in Hospital Wastewater: the focus on Acinetobacter baumannii and Pseudomonas aeruginosa 2026-03-15 q-bio.PE q-bio.PE https://arxiv.org/abs/2603.14395 False False 2603.14597 D-MEM: Dopamine-Gated Agentic Memory via Reward Prediction Error Routing 2026-03-15 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2603.14597 False False 2603.22296 Sketching a Space of Brain States 2026-03-15 q-bio.NC q-bio.NC https://arxiv.org/abs/2603.22296 False False 2603.14161 Deep probabilistic model synthesis enables unified modeling of whole-brain neural activity across individual subjects 2026-03-15 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2603.14161 False False 2603.14161 Deep probabilistic model synthesis enables unified modeling of whole-brain neural activity across individual subjects 2026-03-15 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2603.14161 False False 2603.13937 Countershading coloration in blue shark skin emerges from hierarchically organized and spatially tuned photonic architectures inside skin denticles 2026-03-14 physics.optics;q-bio.QM q-bio.QM https://arxiv.org/abs/2603.13937 False False 2603.13994 Human-like Object Grouping in Self-supervised Vision Transformers 2026-03-14 cs.AI;cs.CV;q-bio.NC q-bio.NC https://arxiv.org/abs/2603.13994 False False 2603.14097 Hierarchical p-Adic Framework for Gene Regulatory Networks: Theory and Stability Analysis 2026-03-14 math.DS;q-bio.MN q-bio.MN https://arxiv.org/abs/2603.14097 False False 2603.16933 Hydrodynamics shapes annularity in coral reefs via scale-free growth processes 2026-03-14 physics.geo-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2603.16933 False False 2603.24603 Fusion Learning from Dynamic Functional Connectivity: Combining the Amplitude and Phase of fMRI Signals to Identify Brain Disorders 2026-03-14 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2603.24603 False False 2603.24603 Fusion Learning from Dynamic Functional Connectivity: Combining the Amplitude and Phase of fMRI Signals to Identify Brain Disorders 2026-03-14 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2603.24603 False False 2603.24603 Fusion Learning from Dynamic Functional Connectivity: Combining the Amplitude and Phase of fMRI Signals to Identify Brain Disorders 2026-03-14 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2603.24603 False False 2603.14097 Hierarchical Non-Archimedean Stability of Finite Discrete Dynamical Systems: A Variational Theory over Coordinate Orderings 2026-03-14 math.DS;q-bio.MN q-bio.MN https://arxiv.org/abs/2603.14097 False False 2603.14097 Hierarchical Non-Archimedean Stability of Finite Discrete Dynamical Systems: A Variational Theory over Coordinate Orderings 2026-03-14 math.DS;q-bio.MN q-bio.MN https://arxiv.org/abs/2603.14097 False False 2603.13994 Human-like Object Grouping in Self-supervised Vision Transformers 2026-03-14 cs.AI;cs.CV;q-bio.NC q-bio.NC https://arxiv.org/abs/2603.13994 False False 2603.13994 Human-like Object Grouping in Self-supervised Vision Transformers 2026-03-14 cs.AI;cs.CV;q-bio.NC q-bio.NC https://arxiv.org/abs/2603.13994 False False 2603.13994 Human-like Object Grouping in Self-supervised Vision Transformers 2026-03-14 cs.AI;cs.CV;q-bio.NC q-bio.NC https://arxiv.org/abs/2603.13994 False False 2603.13994 Human-like Object Grouping in Self-supervised Vision Transformers 2026-03-14 cs.AI;cs.CV;q-bio.NC q-bio.NC https://arxiv.org/abs/2603.13994 False False 2603.12628 Towards unified brain-to-text decoding across speech production and perception 2026-03-13 cs.AI;eess.SP;q-bio.NC q-bio.NC https://arxiv.org/abs/2603.12628 False False 2603.12694 RXNRECer Enables Fine-grained Enzymatic Function Annotation through Active Learning and Protein Language Models 2026-03-13 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2603.12694 False False 2603.12878 Pulse desynchronization of neural populations by targeting the centroid of the limit cycle in phase space 2026-03-13 math.DS;physics.AO;physics.CD;q-bio.NC q-bio.NC https://arxiv.org/abs/2603.12878 False False 2603.13051 Causal Cellular Context Transfer Learning (C3TL): An Efficient Architecture for Prediction of Unseen Perturbation Effects 2026-03-13 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2603.13051 False False 2603.13126 Developing the PsyCogMetrics AI Lab to Evaluate Large Language Models and Advance Cognitive Science -- A Three-Cycle Action Design Science Study 2026-03-13 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2603.13126 False False 2603.13478 Equivalence of approximation by networks of single- and multi-spike neurons 2026-03-13 cs.AI;cs.LG;cs.NE;q-bio.NC;stat.ML q-bio.NC https://arxiv.org/abs/2603.13478 False False 2603.12662 Dual-Laws Model for a theory of artificial consciousness 2026-03-13 cs.SY;eess.SY;q-bio.NC q-bio.NC https://arxiv.org/abs/2603.12662 False False 2603.20262 Deciphering Scientific Reasoning Steps from Outcome Data for Molecule Optimization 2026-03-13 cs.AI;cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2603.20262 False False 2603.12662 Minimal Set of Questions for Theories of Consciousness: Toward a Unified Explanatory Framework 2026-03-13 cs.SY;eess.SY;q-bio.NC q-bio.NC https://arxiv.org/abs/2603.12662 False False 2603.12662 Minimal Set of Questions for Theories of Consciousness: Toward a Unified Explanatory Framework 2026-03-13 cs.SY;eess.SY;q-bio.NC q-bio.NC https://arxiv.org/abs/2603.12662 False False 2603.11387 Framing local structural identifiability and observability in terms of parameter-state symmetries 2026-03-12 math.DS;q-bio.QM q-bio.QM https://arxiv.org/abs/2603.11387 False False 2603.11435 Miniaturized microscopes to study neural dynamics in freely-behaving animals 2026-03-12 physics.optics;q-bio.NC q-bio.NC https://arxiv.org/abs/2603.11435 False False 2603.11476 Leveraging Phytolith Research using Artificial Intelligence 2026-03-12 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2603.11476 False False 2603.11684 Scalable DNA Ternary Full Adder Enabled by a Competitive Blocking Circuit 2026-03-12 q-bio.MN q-bio.MN https://arxiv.org/abs/2603.11684 False False 2603.11732 Scaling Laws and Paradoxical Metastable States in Nanofilament Entropic Separation 2026-03-12 physics.bio-ph;physics.soft;physics.stat-mech;q-bio.BM q-bio.BM https://arxiv.org/abs/2603.11732 False False 2603.12016 Nyxus: A Next Generation Image Feature Extraction Library for the Big Data and AI Era 2026-03-12 cs.CV;q-bio.QM q-bio.QM https://arxiv.org/abs/2603.12016 False False 2603.12053 Topological Enhancement of Protein Kinetic Stability 2026-03-12 q-bio.BM q-bio.BM https://arxiv.org/abs/2603.12053 False False 2603.12073 A Multi-Label Temporal Convolutional Framework for Transcription Factor Binding Characterization 2026-03-12 cs.AI;cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2603.12073 False False 2603.12307 SHREC: A Spectral Embedding-Based Approach for Ab-Initio Reconstruction of Helical Molecules 2026-03-12 eess.IV;q-bio.QM q-bio.QM https://arxiv.org/abs/2603.12307 False False 2603.12341 Self-Reported Side Effects of Semaglutide and Tirzepatide in Online Communities 2026-03-12 cs.SI;q-bio.QM q-bio.QM https://arxiv.org/abs/2603.12341 False False 2603.12349 Budget-Sensitive Discovery Scoring: A Formally Verified Framework for Evaluating AI-Guided Scientific Selection 2026-03-12 cs.AI;cs.LG;q-bio.QM;stat.ML q-bio.QM https://arxiv.org/abs/2603.12349 False False 2603.12351 Probabilistic Joint and Individual Variation Explained (ProJIVE) for Data Integration 2026-03-12 cs.LG;q-bio.QM;stat.CO;stat.ME;stat.ML q-bio.QM https://arxiv.org/abs/2603.12351 False False 2603.12416 Formation of Artificial Neural Assemblies by Biologically Plausible Inhibition Mechanisms 2026-03-12 q-bio.NC q-bio.NC https://arxiv.org/abs/2603.12416 False False 2603.11663 Neural network-based encoding in free-viewing fMRI with gaze-aware models 2026-03-12 q-bio.NC q-bio.NC https://arxiv.org/abs/2603.11663 False False 2603.12107 Social Distancing Equilibria in Games under Conventional SI Dynamics 2026-03-12 cs.GT;math.DS;q-bio.PE q-bio.PE https://arxiv.org/abs/2603.12107 False False 2603.11872 ELISA: An Interpretable Hybrid Generative AI Agent for Expression-Grounded Discovery in Single-Cell Genomics 2026-03-12 cs.AI;q-bio.GN q-bio.GN https://arxiv.org/abs/2603.11872 False False 2603.12253 Binding Free Energies without Alchemy 2026-03-12 q-bio.QM q-bio.QM https://arxiv.org/abs/2603.12253 False False 2603.12416 Formation of Artificial Neural Assemblies by Biologically Plausible Inhibition Mechanisms 2026-03-12 q-bio.NC q-bio.NC https://arxiv.org/abs/2603.12416 False False 2603.12416 Formation of Artificial Neural Assemblies by Biologically Plausible Inhibition Mechanisms 2026-03-12 q-bio.NC q-bio.NC https://arxiv.org/abs/2603.12416 False False 2603.11684 DNA Ternary Full Adder 2026-03-12 q-bio.MN q-bio.MN https://arxiv.org/abs/2603.11684 False False 2603.11684 DNA Ternary Full Adder 2026-03-12 q-bio.MN q-bio.MN https://arxiv.org/abs/2603.11684 False False 2603.11872 ELISA: An Interpretable Hybrid Generative AI Agent for Expression-Grounded Discovery in Single-Cell Genomics 2026-03-12 cs.AI;q-bio.GN q-bio.GN https://arxiv.org/abs/2603.11872 False False 2603.11872 ELISA: An Interpretable Hybrid Generative AI Agent for Expression-Grounded Discovery in Single-Cell Genomics 2026-03-12 cs.AI;q-bio.GN q-bio.GN https://arxiv.org/abs/2603.11872 False False 2603.10302 How to make the most of your masked language model for protein engineering 2026-03-11 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2603.10302 False False 2603.10454 Module control in youth symptom networks across COVID-19 2026-03-11 q-bio.QM q-bio.QM https://arxiv.org/abs/2603.10454 False False 2603.10489 JEDI: Jointly Embedded Inference of Neural Dynamics 2026-03-11 cs.AI;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2603.10489 False False 2603.10669 ATP Level and Phosphorylation Free Energy Regulate Trigger-Wave Speed and Critical Nucleus Size in Cellular Biochemical Systems 2026-03-11 q-bio.MN q-bio.MN https://arxiv.org/abs/2603.10669 False False 2603.10704 Packaging Jupyter notebooks as installable desktop apps using LabConstrictor 2026-03-11 cs.SE;q-bio.QM q-bio.QM https://arxiv.org/abs/2603.10704 False False 2603.10873 SNPgen: Phenotype-Supervised Genotype Representation and Synthetic Data Generation via Latent Diffusion 2026-03-11 cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2603.10873 False False 2603.10885 Continuous Diffusion Transformers for Designing Synthetic Regulatory Elements 2026-03-11 cs.AI;cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2603.10885 False False 2603.10911 Macroscopic Dominance from Microscopic Extremes: Symmetry Breaking in Spatial Competition 2026-03-11 q-bio.PE q-bio.PE https://arxiv.org/abs/2603.10911 False False 2603.10956 Linear Readout of Neural Manifolds with Continuous Variables 2026-03-11 physics.dis-nn;q-bio.NC q-bio.NC https://arxiv.org/abs/2603.10956 False False 2603.10986 "Theory of Cell Body Lensing and Phototaxis Sign Reversal in ""Eyeless"" Mutants of $Chlamydomonas$" 2026-03-11 physics.soft;q-bio.CB q-bio.CB https://arxiv.org/abs/2603.10986 False False 2603.11000 Cross-Species Transfer Learning for Electrophysiology-to-Transcriptomics Mapping in Cortical GABAergic Interneurons 2026-03-11 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2603.11000 False False 2603.11032 Uncovering statistical structure in large-scale neural activity with Restricted Boltzmann Machines 2026-03-11 physics.dis-nn;physics.stat-mech;q-bio.NC q-bio.NC https://arxiv.org/abs/2603.11032 False False 2603.10302 How to make the most of your masked language model for protein engineering 2026-03-11 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2603.10302 False False 2603.10454 Module control in youth symptom networks across COVID-19 2026-03-11 q-bio.QM q-bio.QM https://arxiv.org/abs/2603.10454 False False 2603.10489 JEDI: Jointly Embedded Inference of Neural Dynamics 2026-03-11 cs.AI;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2603.10489 False False 2603.10669 ATP Level and Phosphorylation Free Energy Regulate Trigger-Wave Speed and Critical Nucleus Size in Cellular Biochemical Systems 2026-03-11 q-bio.MN q-bio.MN https://arxiv.org/abs/2603.10669 False False 2603.10704 Packaging Jupyter notebooks as installable desktop apps using LabConstrictor 2026-03-11 cs.SE;q-bio.QM q-bio.QM https://arxiv.org/abs/2603.10704 False False 2603.10873 SNPgen: Phenotype-Supervised Genotype Representation and Synthetic Data Generation via Latent Diffusion 2026-03-11 cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2603.10873 False False 2603.10885 Continuous Diffusion Transformers for Designing Synthetic Regulatory Elements 2026-03-11 cs.AI;cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2603.10885 False False 2603.10911 Macroscopic Dominance from Microscopic Extremes: Symmetry Breaking in Spatial Competition 2026-03-11 q-bio.PE q-bio.PE https://arxiv.org/abs/2603.10911 False False 2603.10956 Linear Readout of Neural Manifolds with Continuous Variables 2026-03-11 physics.dis-nn;q-bio.NC q-bio.NC https://arxiv.org/abs/2603.10956 False False 2603.10986 "Theory of Cell Body Lensing and Phototaxis Sign Reversal in ""Eyeless"" Mutants of $Chlamydomonas$" 2026-03-11 physics.soft;q-bio.CB q-bio.CB https://arxiv.org/abs/2603.10986 False False 2603.11000 Cross-Species Transfer Learning for Electrophysiology-to-Transcriptomics Mapping in Cortical GABAergic Interneurons 2026-03-11 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2603.11000 False False 2603.11032 Uncovering statistical structure in large-scale neural activity with Restricted Boltzmann Machines 2026-03-11 physics.dis-nn;physics.stat-mech;q-bio.NC q-bio.NC https://arxiv.org/abs/2603.11032 False False 2603.11084 Realizing Common Random Numbers: Event-Keyed Hashing for Causally Valid Stochastic Models 2026-03-11 q-bio.QM;stat.ME q-bio.QM https://arxiv.org/abs/2603.11084 False False 2603.11141 Cross-Species Antimicrobial Resistance Prediction from Genomic Foundation Models 2026-03-11 q-bio.GN q-bio.GN https://arxiv.org/abs/2603.11141 False False 2603.11244 A Standardized Framework For Evaluating Gene Expression Generative Models 2026-03-11 cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2603.11244 False False 2603.11248 The macaque IT cortex but not current artificial vision networks encode object position in perceptually aligned coordinates 2026-03-11 q-bio.NC q-bio.NC https://arxiv.org/abs/2603.11248 False False 2603.11296 Single molecule localization microscopy challenge: a biologically inspired benchmark for long-sequence modeling 2026-03-11 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2603.11296 False False 2603.11330 Ill-Conditioning in Dictionary-Based Dynamic-Equation Learning: A Systems Biology Case Study 2026-03-11 cs.LG;cs.NA;math.DS;math.NA;q-bio.QM q-bio.QM https://arxiv.org/abs/2603.11330 False False 2603.11344 Hybrid eTFCE-GRF: Exact Cluster-Size Retrieval with Analytical p-Values for Voxel-Based Morphometry 2026-03-11 eess.IV;q-bio.QM q-bio.QM https://arxiv.org/abs/2603.11344 False False 2603.11347 Human Navigation Behaviour and Brain Dynamics in Real-world Contexts 2026-03-11 q-bio.NC q-bio.NC https://arxiv.org/abs/2603.11347 False False 2603.11369 abx_amr_simulator: A simulation environment for antibiotic prescribing policy optimization under antimicrobial resistance 2026-03-11 cs.LG;q-bio.PE q-bio.PE https://arxiv.org/abs/2603.11369 False False 2603.11234 Biology and Physics 2026-03-11 physics.bio-ph;physics.soft;q-bio.TO q-bio.TO https://arxiv.org/abs/2603.11234 False False 2603.12294 PesTwin: a biology-informed Digital Twin for enabling precision farming 2026-03-11 cs.SE;q-bio.PE;q-bio.QM q-bio.PE https://arxiv.org/abs/2603.12294 False False 2603.11344 Hybrid eTFCE-GRF: Exact Cluster-Size Retrieval with Analytical p-Values for Voxel-Based Morphometry 2026-03-11 eess.IV;q-bio.QM q-bio.QM https://arxiv.org/abs/2603.11344 False False 2603.10302 How to make the most of your masked language model for protein engineering 2026-03-11 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2603.10302 False False 2603.11344 Hybrid eTFCE-GRF: Exact Cluster-Size Retrieval with Analytical p-Values for Voxel-Based Morphometry 2026-03-11 eess.IV;q-bio.QM q-bio.QM https://arxiv.org/abs/2603.11344 False False 2603.10302 How to make the most of your masked language model for protein engineering 2026-03-11 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2603.10302 False False 2603.12294 PesTwin: a biology-informed Digital Twin for enabling precision farming 2026-03-11 cs.SE;q-bio.PE;q-bio.QM q-bio.PE https://arxiv.org/abs/2603.12294 False False 2603.12294 PesTwin: a biology-informed Digital Twin for enabling precision farming 2026-03-11 cs.SE;q-bio.PE;q-bio.QM q-bio.PE https://arxiv.org/abs/2603.12294 False False 2603.11369 abx_amr_simulator: A simulation environment for antibiotic prescribing policy optimization under antimicrobial resistance 2026-03-11 cs.LG;q-bio.PE q-bio.PE https://arxiv.org/abs/2603.11369 False False 2603.11369 abx_amr_simulator: A simulation environment for antibiotic prescribing policy optimization under antimicrobial resistance 2026-03-11 cs.LG;q-bio.PE q-bio.PE https://arxiv.org/abs/2603.11369 False False 2603.12294 PesTwin: a biology-informed Digital Twin for enabling precision farming 2026-03-11 cs.SE;q-bio.PE;q-bio.QM q-bio.PE https://arxiv.org/abs/2603.12294 False False 2603.12294 PesTwin: a biology-informed Digital Twin for enabling precision farming 2026-03-11 cs.SE;q-bio.PE;q-bio.QM q-bio.PE https://arxiv.org/abs/2603.12294 False False 2603.09033 Sequential learning theory for Markov genealogy processes 2026-03-10 math.ST;q-bio.QM;stat.TH q-bio.QM https://arxiv.org/abs/2603.09033 False False 2603.09071 Toda-like Hamiltonian as a probe for quantized prey-predator dynamics 2026-03-10 physics.SI;physics.quant-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2603.09071 False False 2603.09089 Sampling on Discrete Spaces with Temporal Point Processes 2026-03-10 math.PR;q-bio.NC;stat.CO q-bio.NC https://arxiv.org/abs/2603.09089 False False 2603.09384 Dreaming improves memorization in a Hopfield model with bounded synaptic strength 2026-03-10 physics.dis-nn;q-bio.NC q-bio.NC https://arxiv.org/abs/2603.09384 False False 2603.09402 Compact Dynamical Mean-Field Theory of Oscillator Networks 2026-03-10 physics.CD;physics.dis-nn;q-bio.NC q-bio.NC https://arxiv.org/abs/2603.09402 False False 2603.09451 Misspecification of the generation time distribution and its impact on Rt estimates in structured populations 2026-03-10 q-bio.PE q-bio.PE https://arxiv.org/abs/2603.09451 False False 2603.09531 Association of Radiologic PPFE Change with Mortality in Lung Cancer Screening Cohorts 2026-03-10 cs.CV;eess.IV;q-bio.QM;stat.AP q-bio.QM https://arxiv.org/abs/2603.09531 False False 2603.09600 A Variational Latent Equilibrium for Learning in Cortex 2026-03-10 cs.AI;cs.NE;cs.SY;eess.SY;physics.bio-ph;q-bio.NC q-bio.NC https://arxiv.org/abs/2603.09600 False False 2603.09729 Efficient and robust control with spikes that constrain free energy 2026-03-10 cs.RO;cs.SY;eess.SY;q-bio.NC q-bio.NC https://arxiv.org/abs/2603.09729 False False 2603.09765 Curvature Blindness from Polarity Breaks and Orientation Channel Fragmentation in V1 2026-03-10 q-bio.NC q-bio.NC https://arxiv.org/abs/2603.09765 False False 2603.09860 Joint Geometric-Chemical Distance for Protein Surfaces 2026-03-10 physics.bio-ph;q-bio.BM q-bio.BM https://arxiv.org/abs/2603.09860 False False 2603.10093 Equivariant Asynchronous Diffusion: An Adaptive Denoising Schedule for Accelerated Molecular Conformation Generation 2026-03-10 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2603.10093 False False 2603.10161 Omics Data Discovery Agents 2026-03-10 q-bio.GN q-bio.GN https://arxiv.org/abs/2603.10161 False False 2603.10207 Single-cell directional sensing at ultra-low chemoattractant concentrations from extreme first-passage events 2026-03-10 q-bio.CB q-bio.CB https://arxiv.org/abs/2603.10207 False False 2603.10215 SDSR: A Spectral Divide-and-Conquer Approach for Species Tree Reconstruction 2026-03-10 cs.LG;q-bio.PE;stat.ML q-bio.PE https://arxiv.org/abs/2603.10215 False False 2603.10261 Discovery of a Hematopoietic Manifold in scGPT Yields a Method for Extracting Performant Algorithms from Biological Foundation Model Internals 2026-03-10 cs.LG;q-bio.CB;q-bio.GN q-bio.CB https://arxiv.org/abs/2603.10261 False False 2603.09071 Toda-like Hamiltonian as a probe for quantized prey-predator dynamics 2026-03-10 physics.SI;physics.quant-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2603.09071 False False 2603.09089 Sampling on Discrete Spaces with Temporal Point Processes 2026-03-10 math.PR;q-bio.NC;stat.CO q-bio.NC https://arxiv.org/abs/2603.09089 False False 2603.09384 Dreaming improves memorization in a Hopfield model with bounded synaptic strength 2026-03-10 physics.dis-nn;q-bio.NC q-bio.NC https://arxiv.org/abs/2603.09384 False False 2603.09402 Compact Dynamical Mean-Field Theory of Oscillator Networks 2026-03-10 physics.CD;physics.dis-nn;q-bio.NC q-bio.NC https://arxiv.org/abs/2603.09402 False False 2603.09729 Efficient and robust control with spikes that constrain free energy 2026-03-10 cs.RO;cs.SY;eess.SY;q-bio.NC q-bio.NC https://arxiv.org/abs/2603.09729 False False 2603.09765 Curvature Blindness from Polarity Breaks and Orientation Channel Fragmentation in V1 2026-03-10 q-bio.NC q-bio.NC https://arxiv.org/abs/2603.09765 False False 2603.09860 Joint Geometric-Chemical Distance for Protein Surfaces 2026-03-10 physics.bio-ph;q-bio.BM q-bio.BM https://arxiv.org/abs/2603.09860 False False 2603.10093 Equivariant Asynchronous Diffusion: An Adaptive Denoising Schedule for Accelerated Molecular Conformation Generation 2026-03-10 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2603.10093 False False 2603.10207 Single-cell directional sensing at ultra-low chemoattractant concentrations from extreme first-passage events 2026-03-10 q-bio.CB q-bio.CB https://arxiv.org/abs/2603.10207 False False 2603.10215 SDSR: A Spectral Divide-and-Conquer Approach for Species Tree Reconstruction 2026-03-10 cs.LG;q-bio.PE;stat.ML q-bio.PE https://arxiv.org/abs/2603.10215 False False 2603.10261 Discovery of a Hematopoietic Manifold in scGPT Yields a Method for Extracting Performant Algorithms from Biological Foundation Model Internals 2026-03-10 cs.LG;q-bio.CB;q-bio.GN q-bio.CB https://arxiv.org/abs/2603.10261 False False 2603.09451 Misspecification of the generation time distribution and its impact on Rt estimates in structured populations 2026-03-10 q-bio.PE q-bio.PE https://arxiv.org/abs/2603.09451 False False 2603.09600 A Variational Latent Equilibrium for Learning in Neuronal Circuits 2026-03-10 cs.AI;cs.NE;cs.SY;eess.SY;physics.bio-ph;q-bio.NC q-bio.NC https://arxiv.org/abs/2603.09600 False False 2603.10161 Omics Data Discovery Agents 2026-03-10 q-bio.GN q-bio.GN https://arxiv.org/abs/2603.10161 False False 2603.09531 Association of Progressive PPFE and Mortality in Lung Cancer Screening Cohorts 2026-03-10 cs.CV;eess.IV;q-bio.QM;stat.AP q-bio.QM https://arxiv.org/abs/2603.09531 False False 2603.20246 Decoding the decoder: Contextual sequence-to-sequence modeling for intracortical speech decoding 2026-03-10 cs.AI;cs.CL;cs.NE;q-bio.NC q-bio.NC https://arxiv.org/abs/2603.20246 False False 2603.09033 Sequential learning theory for Markov genealogy processes 2026-03-10 math.ST;q-bio.QM;stat.TH q-bio.QM https://arxiv.org/abs/2603.09033 False False 2603.10093 Equivariant Asynchronous Diffusion: An Adaptive Denoising Schedule for Accelerated Molecular Conformation Generation 2026-03-10 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2603.10093 False False 2603.10093 Equivariant Asynchronous Diffusion: An Adaptive Denoising Schedule for Accelerated Molecular Conformation Generation 2026-03-10 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2603.10093 False False 2603.09402 Compact Dynamical Mean-Field Theory of Oscillator Networks 2026-03-10 physics.CD;physics.dis-nn;q-bio.NC q-bio.NC https://arxiv.org/abs/2603.09402 False False 2603.09402 Compact Dynamical Mean-Field Theory of Oscillator Networks 2026-03-10 physics.CD;physics.dis-nn;q-bio.NC q-bio.NC https://arxiv.org/abs/2603.09402 False False 2603.09089 Sampling on Discrete Spaces with Temporal Point Processes 2026-03-10 math.PR;q-bio.NC;stat.CO q-bio.NC https://arxiv.org/abs/2603.09089 False False 2603.09089 Sampling on Discrete Spaces with Temporal Point Processes 2026-03-10 math.PR;q-bio.NC;stat.CO q-bio.NC https://arxiv.org/abs/2603.09089 False False 2603.10161 Omics Data Discovery Agents: Agent-Supported Retrieval, Reanalysis, and Synthesis of Published Omics Data 2026-03-10 q-bio.GN q-bio.GN https://arxiv.org/abs/2603.10161 False False 2603.10161 Omics Data Discovery Agents: Agent-Supported Retrieval, Reanalysis, and Synthesis of Published Omics Data 2026-03-10 q-bio.GN q-bio.GN https://arxiv.org/abs/2603.10161 False False 2603.08062 Adversarial Domain Adaptation Enables Knowledge Transfer Across Heterogeneous RNA-Seq Datasets 2026-03-09 cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2603.08062 False False 2603.08300 A thermodynamic metric quantitatively predicts disordered protein partitioning and multicomponent phase behavior 2026-03-09 physics.mtrl-sci;physics.soft;physics.stat-mech;q-bio.BM q-bio.BM https://arxiv.org/abs/2603.08300 False False 2603.08345 Amortized Phylodynamic Inference with Neural Bayes Estimators and Recursive Neural Networks 2026-03-09 q-bio.QM;stat.ME q-bio.QM https://arxiv.org/abs/2603.08345 False False 2603.08767 Duality in mass-action networks 2026-03-09 math.CO;math.DS;q-bio.MN q-bio.MN https://arxiv.org/abs/2603.08767 False False 2603.08861 Geometric early warning indicator from stochastic separatrix structure in a random two-state ecosystem model 2026-03-09 math.DS;math.PR;q-bio.PE q-bio.PE https://arxiv.org/abs/2603.08861 False False 2603.08866 A Dynamical Systems and System Identification Framework for Phase Amplitude Coupling Analysis 2026-03-09 eess.SP;q-bio.NC q-bio.NC https://arxiv.org/abs/2603.08866 False False 2603.08874 The Black Death Anomaly: A Non-Abelian Field Theory of Epidemiological Safe Zones 2026-03-09 q-bio.PE q-bio.PE https://arxiv.org/abs/2603.08874 False False 2603.08882 Automated Classification of Homeostasis Structure in Input-Output Networks 2026-03-09 math.DS;q-bio.MN q-bio.MN https://arxiv.org/abs/2603.08882 False False 2603.08913 Quantifying Memorization and Privacy Risks in Genomic Language Models 2026-03-09 cs.CR;cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2603.08913 False False 2603.08949 Diffusion of Neuromodulators for Temporal Credit Assignment 2026-03-09 q-bio.NC q-bio.NC https://arxiv.org/abs/2603.08949 False False 2603.08409 Embodied intelligence solves the centipede's dilemma 2026-03-09 physics.bio-ph;q-bio.NC q-bio.NC https://arxiv.org/abs/2603.08409 False False 2603.08444 Hydrodynamic origins of symmetric swimming strategies 2026-03-09 physics.bio-ph;physics.flu-dyn;q-bio.QM q-bio.QM https://arxiv.org/abs/2603.08444 False False 2603.08409 Embodied intelligence solves the centipede's dilemma 2026-03-09 physics.bio-ph;q-bio.NC q-bio.NC https://arxiv.org/abs/2603.08409 False False 2603.08767 Duality in mass-action networks 2026-03-09 math.CO;math.DS;q-bio.MN q-bio.MN https://arxiv.org/abs/2603.08767 False False 2603.08866 A Dynamical Systems and System Identification Framework for Phase Amplitude Coupling Analysis 2026-03-09 eess.SP;q-bio.NC q-bio.NC https://arxiv.org/abs/2603.08866 False False 2603.08874 The Black Death Anomaly: A Non-Abelian Field Theory of Epidemiological Safe Zones 2026-03-09 q-bio.PE q-bio.PE https://arxiv.org/abs/2603.08874 False False 2603.08882 Automated Classification of Homeostasis Structure in Input-Output Networks 2026-03-09 math.DS;q-bio.MN q-bio.MN https://arxiv.org/abs/2603.08882 False False 2603.08913 Quantifying Memorization and Privacy Risks in Genomic Language Models 2026-03-09 cs.CR;cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2603.08913 False False 2603.08949 Diffusion of Neuromodulators for Temporal Credit Assignment 2026-03-09 q-bio.NC q-bio.NC https://arxiv.org/abs/2603.08949 False False 2603.08444 Hydrodynamic origins of symmetric swimming strategies 2026-03-09 physics.bio-ph;physics.flu-dyn;q-bio.QM q-bio.QM https://arxiv.org/abs/2603.08444 False False 2603.08861 Geometric early warning indicator from stochastic separatrix structure in a random two-state ecosystem model 2026-03-09 math.DS;math.PR;physics.CD;q-bio.PE q-bio.PE https://arxiv.org/abs/2603.08861 False False 2603.08767 Duality in mass-action networks 2026-03-09 math.CO;math.DS;q-bio.MN q-bio.MN https://arxiv.org/abs/2603.08767 False False 2603.08767 Duality in mass-action networks 2026-03-09 math.CO;math.DS;q-bio.MN q-bio.MN https://arxiv.org/abs/2603.08767 False False 2603.07710 Reverse Distillation: Consistently Scaling Protein Language Model Representations 2026-03-08 cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2603.07710 False False 2603.07000 A Class of Unrooted Phylogenetic Networks Inspired by the Properties of Rooted Tree-Child Networks 2026-03-07 cs.DS;math.CO;q-bio.PE q-bio.PE https://arxiv.org/abs/2603.07000 False False 2603.07137 Preservation Constraints on aDNA Information Generation and the HSF Posterior Sourcing Framework: A First-Principles Critique of Conventional Methods 2026-03-07 q-bio.BM q-bio.BM https://arxiv.org/abs/2603.07137 False False 2603.07217 A Miniature Brain Transformer: Thalamic Gating, Hippocampal Lateralization, Amygdaloid Salience, and Prefrontal Working Memory in Attention-Coupled Latent Memory 2026-03-07 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2603.07217 False False 2603.07275 Polarization-wave propagation as a biophysical mechanism of visual cognition 2026-03-07 q-bio.NC q-bio.NC https://arxiv.org/abs/2603.07275 False False 2603.07279 Learning When to Look: On-Demand Keypoint-Video Fusion for Animal Behavior Analysis 2026-03-07 q-bio.QM q-bio.QM https://arxiv.org/abs/2603.07279 False False 2603.07364 Neural Control and Learning of Simulated Hand Movements With an EMG-Based Closed-Loop Interface 2026-03-07 cs.HC;q-bio.NC;q-bio.QM q-bio.NC https://arxiv.org/abs/2603.07364 False False 2603.07369 Task learning increases information redundancy of neural responses in macaque visual cortex 2026-03-07 cs.CV;q-bio.NC q-bio.NC https://arxiv.org/abs/2603.07369 False False 2603.07254 Minority-Triggered Reorientations Yield Macroscopic Cascades and Enhanced Responsiveness in Swarms 2026-03-07 physics.bio-ph;physics.stat-mech;q-bio.QM q-bio.QM https://arxiv.org/abs/2603.07254 False False 2603.08751 Exploring Strategies for Personalized Radiation Therapy Part IV: An Interaction-Picture Approach to Quantify the Abscopal Effect 2026-03-07 physics.med-ph;q-bio.QM q-bio.QM https://arxiv.org/abs/2603.08751 False False 2603.07254 Minority-Triggered Reorientations Yield Macroscopic Cascades and Enhanced Responsiveness in Swarms 2026-03-07 physics.bio-ph;physics.stat-mech;q-bio.QM q-bio.QM https://arxiv.org/abs/2603.07254 False False 2603.08751 Exploring Strategies for Personalized Radiation Therapy Part IV: An Interaction-Picture Approach to Quantify the Abscopal Effect 2026-03-07 physics.med-ph;q-bio.QM q-bio.QM https://arxiv.org/abs/2603.08751 False False 2603.13342 MS2MetGAN: Latent-space adversarial training for metabolite-spectrum matching in MS/MS database search 2026-03-07 cs.IR;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2603.13342 False False 2603.12286 The DIME Architecture: A Unified Operational Algorithm for Neural Representation, Dynamics, Control and Integration 2026-03-07 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2603.12286 False False 2603.07137 Preservation Constraints on aDNA Information Generation and the HSF Posterior Sourcing Framework: A First-Principles Critique of Conventional Methods 2026-03-07 q-bio.BM q-bio.BM https://arxiv.org/abs/2603.07137 False False 2603.06087 Multicellular Tumour Spheroids Exposure to Pulsed Electric Field: A Combined Experimental and Mathematical Modelling Study Highlighting Temporal Dynamics of DAMP Release and Accelerated Regrowth at Intermediate Field Intensities 2026-03-06 q-bio.QM q-bio.QM https://arxiv.org/abs/2603.06087 False False 2603.06235 Risk mapping novel respiratory pathogens with large-scale dynamic contact networks 2026-03-06 physics.soc-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2603.06235 False False 2603.06478 Can deleterious mutations surf deterministic population waves? A functional law of large numbers for a spatial model of Muller's ratchet 2026-03-06 math.AP;math.PR;q-bio.PE q-bio.PE https://arxiv.org/abs/2603.06478 False False 2603.06557 Causal Interpretation of Neural Network Computations with Contribution Decomposition 2026-03-06 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2603.06557 False False 2603.06559 Sampling-based Continuous Optimization for Messenger RNA Design 2026-03-06 q-bio.BM q-bio.BM https://arxiv.org/abs/2603.06559 False False 2603.06567 A recipe for scalable attention-based MLIPs: unlocking long-range accuracy with all-to-all node attention 2026-03-06 cs.CE;cs.LG;physics.chem-ph;physics.mtrl-sci;q-bio.QM q-bio.QM https://arxiv.org/abs/2603.06567 False False 2603.06740 ViroGym: Realistic Large-Scale Benchmarks for Evaluating Viral Proteins 2026-03-06 cs.AI;q-bio.QM q-bio.QM https://arxiv.org/abs/2603.06740 False False 2603.06751 Parameter Identifiability Under Limited Experimental Data in Age-Structured Models of the Cell Cycle 2026-03-06 math.DS;q-bio.CB q-bio.CB https://arxiv.org/abs/2603.06751 False False 2603.06756 GWAS Summary Statistic Tool: A Meta-Analysis and Parsing Tool for Polygenic Risk Score Calculation 2026-03-06 q-bio.QM q-bio.QM https://arxiv.org/abs/2603.06756 False False 2603.06768 Benchmarking 80 binary phenotypes from the openSNP dataset using deep learning algorithms and polygenic risk score tools 2026-03-06 q-bio.GN q-bio.GN https://arxiv.org/abs/2603.06768 False False 2603.06778 A cocktail of chemical reaction networks and mathematical epidemiology tools for positive ODE stability problems 2026-03-06 math.DS;q-bio.MN q-bio.MN https://arxiv.org/abs/2603.06778 False False 2603.06804 Identifying genes associated with phenotypes using machine and deep learning 2026-03-06 q-bio.GN q-bio.GN https://arxiv.org/abs/2603.06804 False False 2603.06816 """Dark Triad"" Model Organisms of Misalignment: Narrow Fine-Tuning Mirrors Human Antisocial Behavior" 2026-03-06 cs.AI;cs.CL;q-bio.NC q-bio.NC https://arxiv.org/abs/2603.06816 False False 2603.06819 Modeling Metabolic State Transitions in Obesity Using a Time-Varying Lambda-Omega Framework 2026-03-06 q-bio.QM q-bio.QM https://arxiv.org/abs/2603.06819 False False 2603.06903 HIDDENdb: Co-dependency database reveals a plethora of genetic and protein interactions 2026-03-06 q-bio.MN q-bio.MN https://arxiv.org/abs/2603.06903 False False 2603.06950 How Private Are DNA Embeddings? Inverting Foundation Model Representations of Genomic Sequences 2026-03-06 cs.AI;cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2603.06950 False False 2603.06819 Modeling Metabolic State Transitions in Obesity Using a Time-Varying Lambda-Omega Framework 2026-03-06 q-bio.QM q-bio.QM https://arxiv.org/abs/2603.06819 False False 2603.18028 Clinically Meaningful Explainability for NeuroAI: An ethical, technical, and clinical perspective 2026-03-06 cs.AI;cs.CY;q-bio.NC q-bio.NC https://arxiv.org/abs/2603.18028 False False 2603.06778 A cocktail of chemical reaction networks and mathematical epidemiology tools for positive ODE stability problems 2026-03-06 math.DS;q-bio.MN q-bio.MN https://arxiv.org/abs/2603.06778 False False 2603.06235 Risk mapping novel respiratory pathogens with large-scale dynamic contact networks 2026-03-06 physics.soc-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2603.06235 False False 2603.06235 Risk mapping novel respiratory pathogens with large-scale dynamic contact networks 2026-03-06 physics.soc-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2603.06235 False False 2603.06235 Risk mapping novel respiratory pathogens with large-scale dynamic contact networks 2026-03-06 physics.soc-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2603.06235 False False 2603.06778 A cocktail of chemical reaction networks and mathematical epidemiology tools for positive ODE stability problems 2026-03-06 math.DS;q-bio.MN q-bio.MN https://arxiv.org/abs/2603.06778 False False 2603.06768 Benchmarking end-to-end genotype-to-phenotype prediction workflows across 80 openSNP phenotypes 2026-03-06 q-bio.GN q-bio.GN https://arxiv.org/abs/2603.06768 False False 2603.06768 Benchmarking end-to-end genotype-to-phenotype prediction workflows across 80 openSNP phenotypes 2026-03-06 q-bio.GN q-bio.GN https://arxiv.org/abs/2603.06768 False False 2603.06740 ViroGym: Realistic Large-Scale Benchmarks for Evaluating Viral Proteins 2026-03-06 cs.AI;q-bio.QM q-bio.QM https://arxiv.org/abs/2603.06740 False False 2603.06740 ViroGym: Realistic Large-Scale Benchmarks for Evaluating Viral Proteins 2026-03-06 cs.AI;q-bio.QM q-bio.QM https://arxiv.org/abs/2603.06740 False False 2603.06478 A functional law of large numbers for a spatial model of Muller's ratchet 2026-03-06 math.AP;math.PR;q-bio.PE q-bio.PE https://arxiv.org/abs/2603.06478 False False 2603.06478 A functional law of large numbers for a spatial model of Muller's ratchet 2026-03-06 math.AP;math.PR;q-bio.PE q-bio.PE https://arxiv.org/abs/2603.06478 False False 2603.04688 Why the Brain Consolidates: Predictive Forgetting for Optimal Generalisation 2026-03-05 cs.AI;cs.LG;q-bio.NC;stat.ML q-bio.NC https://arxiv.org/abs/2603.04688 False False 2603.04747 Neural geometry in the human hippocampus enables generalization across spatial position and gaze 2026-03-05 q-bio.NC q-bio.NC https://arxiv.org/abs/2603.04747 False False 2603.04748 SeekRBP: Leveraging Sequence-Structure Integration with Reinforcement Learning for Receptor-Binding Protein Identification 2026-03-05 q-bio.GN q-bio.GN https://arxiv.org/abs/2603.04748 False False 2603.04939 When minor issues matter: symmetries, pluralism, and polarization in similarity-based opinion dynamics 2026-03-05 physics.soc-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2603.04939 False False 2603.05418 The Spatial and Temporal Resolution of Motor Intention in Multi-Target Prediction 2026-03-05 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2603.05418 False False 2603.05572 Machine Learning for analysis of Multiple Sclerosis cross-tissue bulk and single-cell transcriptomics data 2026-03-05 cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2603.05572 False False 2603.05612 Behavior-dLDS: A decomposed linear dynamical systems model for neural activity partially constrained by behavior 2026-03-05 cs.LG;q-bio.NC;stat.AP;stat.ML q-bio.NC https://arxiv.org/abs/2603.05612 False False 2603.05626 The Impact of Neglecting Vaccine Unwillingness in Epidemiology Models 2026-03-05 math.DS;q-bio.PE q-bio.PE https://arxiv.org/abs/2603.05626 False False 2603.06715 Understanding and Managing Frogeye Leaf Spot through Network-Based Modeling in Soybean 2026-03-05 q-bio.PE;stat.CO q-bio.PE https://arxiv.org/abs/2603.06715 False False 2603.04748 SeekRBP: Leveraging Sequence-Structure Integration with Reinforcement Learning for Receptor-Binding Protein Identification 2026-03-05 q-bio.GN q-bio.GN https://arxiv.org/abs/2603.04748 False False 2603.05612 Behavior-dLDS: A decomposed linear dynamical systems model for neural activity partially constrained by behavior 2026-03-05 cs.LG;q-bio.NC;stat.AP;stat.ML q-bio.NC https://arxiv.org/abs/2603.05612 False False 2603.05612 Behavior-dLDS: A decomposed linear dynamical systems model for neural activity partially constrained by behavior 2026-03-05 cs.LG;q-bio.NC;stat.AP;stat.ML q-bio.NC https://arxiv.org/abs/2603.05612 False False 2603.04939 When minor issues matter: symmetries, pluralism, and polarization in similarity-based opinion dynamics 2026-03-05 physics.soc-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2603.04939 False False 2603.04939 When minor issues matter: symmetries, pluralism, and polarization in similarity-based opinion dynamics 2026-03-05 physics.soc-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2603.04939 False False 2603.04748 SeekRBP: Leveraging Sequence-Structure Integration with Reinforcement Learning for Receptor-Binding Protein Identification 2026-03-05 q-bio.GN q-bio.GN https://arxiv.org/abs/2603.04748 False False 2603.04748 SeekRBP: Leveraging Sequence-Structure Integration with Reinforcement Learning for Receptor-Binding Protein Identification 2026-03-05 q-bio.GN q-bio.GN https://arxiv.org/abs/2603.04748 False False 2603.03603 Detection and Identification of Penguins Using Appearance and Motion Features 2026-03-04 cs.CV;q-bio.QM q-bio.QM https://arxiv.org/abs/2603.03603 False False 2603.03604 Tracking Feral Horses in Aerial Video Using Oriented Bounding Boxes 2026-03-04 cs.CV;q-bio.QM q-bio.QM https://arxiv.org/abs/2603.03604 False False 2603.03864 Performance of Conventional EEG Biomarkers Across Different Clinical Phases of Major Depressive Disorder: A Comprehensive Evaluation 2026-03-04 q-bio.NC q-bio.NC https://arxiv.org/abs/2603.03864 False False 2603.03866 Ising Models of Cooperativity in Muscle Contraction 2026-03-04 physics.mes-hall;physics.stat-mech;q-bio.MN q-bio.MN https://arxiv.org/abs/2603.03866 False False 2603.03870 Two-phase quadratic integrate-and-fire neurons: Exact low-dimensional description for ensembles of finite-voltage neurons 2026-03-04 physics.AO;q-bio.NC q-bio.NC https://arxiv.org/abs/2603.03870 False False 2603.04074 Dose-Dependent Cardiac Complexity Changes in Children Following Prenatal Glucocorticoid Exposure: Complementary Evidence from Multiscale Entropy Analysis and ECG Foundation Models 2026-03-04 q-bio.QM q-bio.QM https://arxiv.org/abs/2603.04074 False False 2603.04081 Revisiting the Role of Foundation Models in Cell-Level Histopathological Image Analysis under Small-Patch Constraints -- Effects of Training Data Scale and Blur Perturbations on CNNs and Vision Transformers 2026-03-04 cs.CV;q-bio.QM q-bio.QM https://arxiv.org/abs/2603.04081 False False 2603.04149 Topological Origin of the Diversity of Timescales in Recurrent Neural Circuits 2026-03-04 q-bio.NC q-bio.NC https://arxiv.org/abs/2603.04149 False False 2603.04480 AbAffinity: A Large Language Model for Predicting Antibody Binding Affinity against SARS-CoV-2 2026-03-04 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2603.04480 False False 2603.04622 INTENSE: Detecting and disentangling neuronal selectivity in calcium imaging data 2026-03-04 q-bio.NC;q-bio.QM q-bio.NC https://arxiv.org/abs/2603.04622 False False 2603.04638 Spinverse: Differentiable Physics for Permeability-Aware Microstructure Reconstruction from Diffusion MRI 2026-03-04 cs.CV;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2603.04638 False False 2603.04251 Predicting oscillations in complex networks with delayed feedback 2026-03-04 physics.dis-nn;q-bio.PE q-bio.PE https://arxiv.org/abs/2603.04251 False False 2603.05541 Privacy-Preserving Collaborative Medical Image Segmentation Using Latent Transform Networks 2026-03-04 cs.CR;eess.IV;q-bio.QM q-bio.QM https://arxiv.org/abs/2603.05541 False False 2603.06694 A Modelling Assessment of the Impact of Control Measures on Simulated Foot-and-Mouth Disease Spread in Mato Grosso do Sul, Brazil 2026-03-04 q-bio.PE;q-bio.QM q-bio.PE https://arxiv.org/abs/2603.06694 False False 2603.12281 Artificial intelligence applications in Parkinson's disease via retinal imaging 2026-03-04 eess.IV;q-bio.TO q-bio.TO https://arxiv.org/abs/2603.12281 False False 2603.03866 Ising Models of Cooperativity in Muscle Contraction 2026-03-04 physics.mes-hall;physics.stat-mech;q-bio.MN q-bio.MN https://arxiv.org/abs/2603.03866 False False 2603.03866 Ising Models of Cooperativity in Muscle Contraction 2026-03-04 physics.mes-hall;physics.stat-mech;q-bio.MN q-bio.MN https://arxiv.org/abs/2603.03866 False False 2603.03866 Ising Models of Cooperativity in Muscle Contraction 2026-03-04 physics.mes-hall;physics.stat-mech;q-bio.MN q-bio.MN https://arxiv.org/abs/2603.03866 False False 2603.03866 Ising Models of Cooperativity in Muscle Contraction 2026-03-04 physics.mes-hall;physics.stat-mech;q-bio.MN q-bio.MN https://arxiv.org/abs/2603.03866 False False 2603.02491 What Capable Agents Must Know: Selection Theorems for Robust Decision-Making under Uncertainty 2026-03-03 cs.AI;cs.LG;cs.RO;q-bio.NC;stat.ML q-bio.NC https://arxiv.org/abs/2603.02491 False False 2603.02496 Recombination Rate Modifiers under Stochastic Transmission 2026-03-03 q-bio.PE q-bio.PE https://arxiv.org/abs/2603.02496 False False 2603.02572 Molecular Dynamics Simulations Reveal PolyQ-Length-Dependent Conformational Changes in Huntingtin Exon-1: Implications for Environmental Co-Solvent Modulation of Aggregation-Prone States 2026-03-03 cs.CE;q-bio.BM q-bio.BM https://arxiv.org/abs/2603.02572 False False 2603.02627 Topological bounds on the dynamical growth rate of chemical reaction networks 2026-03-03 math.DS;q-bio.MN q-bio.MN https://arxiv.org/abs/2603.02627 False False 2603.02665 Stochastic modeling of long-legged ant A. gracilipes locomotion in laboratory experiments 2026-03-03 physics.bio-ph;q-bio.QM q-bio.QM https://arxiv.org/abs/2603.02665 False False 2603.02708 "All-optical intracellular thermal profiling using nanodiamond-based ""thermal radar""" 2026-03-03 physics.bio-ph;q-bio.SC q-bio.SC https://arxiv.org/abs/2603.02708 False False 2603.02753 Deep learning-guided evolutionary optimization for protein design 2026-03-03 cs.LG;q-bio.QM;stat.ML q-bio.QM https://arxiv.org/abs/2603.02753 False False 2603.02757 Mathematical model of tumor-macrophage interactions: Elucidating the tumor-driven macrophage phenotype reprogramming 2026-03-03 q-bio.PE q-bio.PE https://arxiv.org/abs/2603.02757 False False 2603.02770 Autocatalytic Cores in Reaction Networks with Explicit Catalysis 2026-03-03 math.CO;q-bio.MN q-bio.MN https://arxiv.org/abs/2603.02770 False False 2603.02952 Sparse autoencoders reveal organized biological knowledge but minimal regulatory logic in single-cell foundation models: a comparative atlas of Geneformer and scGPT 2026-03-03 cs.LG;q-bio.CB;q-bio.GN q-bio.CB https://arxiv.org/abs/2603.02952 False False 2603.03037 Zigzag Persistence of Neural Responses to Time-Varying Stimuli 2026-03-03 math.AT;q-bio.NC q-bio.NC https://arxiv.org/abs/2603.03037 False False 2603.03190 Expectation and Acoustic Neural Network Representations Enhance Music Identification from Brain Activity 2026-03-03 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2603.03190 False False 2603.03237 Topology of Multi-species Localization 2026-03-03 math.AT;q-bio.QM q-bio.QM https://arxiv.org/abs/2603.03237 False False 2603.03414 Cognitive Dark Matter: Measuring What AI Misses 2026-03-03 q-bio.NC q-bio.NC https://arxiv.org/abs/2603.03414 False False 2603.03476 Stringology-Based Motif Discovery from EEG Signals: an ADHD Case Study 2026-03-03 cs.DS;cs.IR;cs.NE;q-bio.NC q-bio.NC https://arxiv.org/abs/2603.03476 False False 2603.03493 Quantifying Ranking Instability Across Evaluation Protocol Axes in Gene Regulatory Network Benchmarking 2026-03-03 cs.LG;q-bio.MN q-bio.MN https://arxiv.org/abs/2603.03493 False False 2603.03521 On estimating the effective sample size of phylogenetic trees in an autocorrelated chain 2026-03-03 q-bio.PE q-bio.PE https://arxiv.org/abs/2603.03521 False False 2603.03547 Learning functional groups in complex microbiomes 2026-03-03 physics.bio-ph;q-bio.GN q-bio.GN https://arxiv.org/abs/2603.03547 False False 2603.03591 Mutation Rate Variation Across Genomic Regions in \textit{Arabidopsis thaliana} 2026-03-03 q-bio.PE q-bio.PE https://arxiv.org/abs/2603.03591 False False 2603.03201 A Dynamical Theory of Sequential Retrieval in Input-Driven Hopfield Networks 2026-03-03 cs.NE;math.DS;physics.dis-nn;q-bio.NC q-bio.NC https://arxiv.org/abs/2603.03201 False False 2603.05534 In-batch Relational Features Enhance Precision in An Unsupervised Medical Anomaly Detection Task 2026-03-03 eess.IV;q-bio.QM q-bio.QM https://arxiv.org/abs/2603.05534 False False 2603.03507 Solving adversarial examples requires solving exponential misalignment 2026-03-03 cs.LG;physics.dis-nn;q-bio.NC;stat.ML q-bio.NC https://arxiv.org/abs/2603.03507 False False 2603.03507 Solving adversarial examples requires solving exponential misalignment 2026-03-03 cs.LG;physics.dis-nn;q-bio.NC;stat.ML q-bio.NC https://arxiv.org/abs/2603.03507 False False 2603.03190 Expectation and Acoustic Neural Network Representations Enhance Music Identification from Brain Activity 2026-03-03 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2603.03190 False False 2603.12279 Toward Robust, Reproducible, and Widely Accessible Intracranial Language Brain-Computer Interfaces: A Comprehensive Review of Neural Mechanisms, Hardware, Algorithms, Evaluation, Clinical Pathways and Future Directions 2026-03-03 q-bio.NC q-bio.NC https://arxiv.org/abs/2603.12279 False False 2603.16894 Less Is More in Chemotherapy of Breast Cancer 2026-03-03 q-bio.QM;q-bio.TO q-bio.QM https://arxiv.org/abs/2603.16894 False False 2603.16897 EEG-Based Brain-LLM Interface for Human Preference Aligned Generation 2026-03-03 cs.CL;cs.HC;cs.LG;eess.SP;q-bio.NC q-bio.NC https://arxiv.org/abs/2603.16897 False False 2603.02627 Topological bounds on the dynamical growth rate of chemical reaction networks 2026-03-03 math.DS;q-bio.MN q-bio.MN https://arxiv.org/abs/2603.02627 False False 2603.02491 What Capable Agents Must Know: Selection Theorems for Robust Decision-Making under Uncertainty 2026-03-03 cs.AI;cs.LG;cs.RO;q-bio.NC;stat.ML q-bio.NC https://arxiv.org/abs/2603.02491 False False 2603.03190 Expectation and Acoustic Neural Network Representations Enhance Music Identification from Brain Activity 2026-03-03 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2603.03190 False False 2603.03190 Expectation and Acoustic Neural Network Representations Enhance Music Identification from Brain Activity 2026-03-03 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2603.03190 False False 2603.02491 What Capable Agents Must Know: Selection Theorems for Robust Decision-Making under Uncertainty 2026-03-03 cs.AI;cs.LG;cs.RO;q-bio.NC;stat.ML q-bio.NC https://arxiv.org/abs/2603.02491 False False 2603.02491 What Capable Agents Must Know: Selection Theorems for Robust Decision-Making under Uncertainty 2026-03-03 cs.AI;cs.LG;cs.RO;q-bio.NC;stat.ML q-bio.NC https://arxiv.org/abs/2603.02491 False False 2603.05534 In-batch Relational Features Enhance Precision in An Unsupervised Medical Anomaly Detection Task 2026-03-03 eess.IV;q-bio.QM q-bio.QM https://arxiv.org/abs/2603.05534 False False 2603.05534 In-batch Relational Features Enhance Precision in An Unsupervised Medical Anomaly Detection Task 2026-03-03 eess.IV;q-bio.QM q-bio.QM https://arxiv.org/abs/2603.05534 False False 2603.02627 Topological bounds on the dynamical growth rate of chemical reaction networks 2026-03-03 math.DS;q-bio.MN q-bio.MN https://arxiv.org/abs/2603.02627 False False 2603.02627 Topological bounds on the dynamical growth rate of chemical reaction networks 2026-03-03 math.DS;q-bio.MN q-bio.MN https://arxiv.org/abs/2603.02627 False False 2603.03414 Cognitive Dark Matter: Measuring What AI Misses 2026-03-03 q-bio.NC q-bio.NC https://arxiv.org/abs/2603.03414 False False 2603.03414 Cognitive Dark Matter: Measuring What AI Misses 2026-03-03 q-bio.NC q-bio.NC https://arxiv.org/abs/2603.03414 False False 2603.01537 Pharmacology Knowledge Graphs: Do We Need Chemical Structure for Drug Repurposing? 2026-03-02 cs.AI;q-bio.BM;q-bio.QM q-bio.BM https://arxiv.org/abs/2603.01537 False False 2603.01568 Rate-Distortion Signatures of Generalization and Information Trade-offs 2026-03-02 cs.CV;cs.IT;cs.LG;math.IT;q-bio.NC q-bio.NC https://arxiv.org/abs/2603.01568 False False 2603.01701 A speciation simulation that partly passes open-endedness tests 2026-03-02 cs.MA;q-bio.PE q-bio.PE https://arxiv.org/abs/2603.01701 False False 2603.01774 Approximate message passing for block-structured ecological systems 2026-03-02 math.PR;q-bio.PE q-bio.PE https://arxiv.org/abs/2603.01774 False False 2603.01780 D3LM: A Discrete DNA Diffusion Language Model for Bidirectional DNA Understanding and Generation 2026-03-02 cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2603.01780 False False 2603.01849 Characterization of the novel transposon Tn7722 harboring bla NDM-1 : Insights into the evolutionary dynamics of resistance in Klebsiella pneumoniae 2026-03-02 q-bio.QM q-bio.QM https://arxiv.org/abs/2603.01849 False False 2603.01873 Bi-TEAM: A Unified Cross-Scale Representation Learning Framework for Chemically Modified Biomolecules 2026-03-02 q-bio.BM q-bio.BM https://arxiv.org/abs/2603.01873 False False 2603.01965 CoVAE: correlated multimodal generative modeling 2026-03-02 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2603.01965 False False 2603.02036 Lag-Induced Critical Transitions to Extinction in Replicating Systems 2026-03-02 math.DS;q-bio.PE q-bio.PE https://arxiv.org/abs/2603.02036 False False 2603.02165 Investigating the short-term effects of particulate matter (PM) chemical components on mortality and the potential modifying effect of extreme temperature: A time-series analysis in London 2026-03-02 physics.ao-ph;q-bio.QM q-bio.QM https://arxiv.org/abs/2603.02165 False False 2603.02283 Fast and Versatile RNA Design via Motif-level Divide-and-Conquer and Structure-level Rival Search 2026-03-02 q-bio.BM q-bio.BM https://arxiv.org/abs/2603.02283 False False 2603.02402 GPU-accelerated single-cell analysis at scale with rapids-singlecell 2026-03-02 q-bio.GN q-bio.GN https://arxiv.org/abs/2603.02402 False False 2603.02403 Fluctuating environments are sufficient to drive substantial variability in species abundance across locations 2026-03-02 physics.bio-ph;physics.stat-mech;q-bio.PE q-bio.PE https://arxiv.org/abs/2603.02403 False False 2603.02461 Understanding Decision-Making Across the Lifespan Needs Theoretical Neuroscience 2026-03-02 q-bio.NC q-bio.NC https://arxiv.org/abs/2603.02461 False False 2603.01387 An Information-Theoretic Framework For Optimizing Experimental Design To Distinguish Probabilistic Neural Codes 2026-03-02 cs.IT;math.IT;q-bio.NC q-bio.NC https://arxiv.org/abs/2603.01387 0.786 0.7423 True 6 6.9 False 2603.01682 Modeling and Analysis of Fish Interaction Networks under Projected Visual Stimuli 2026-03-02 cs.SI;q-bio.QM q-bio.QM https://arxiv.org/abs/2603.01682 False False 2603.01752 Causal Circuit Tracing Reveals Distinct Computational Architectures in Single-Cell Foundation Models: Inhibitory Dominance, Biological Coherence, and Cross-Model Convergence 2026-03-02 cs.LG;q-bio.CB;q-bio.GN q-bio.CB https://arxiv.org/abs/2603.01752 False False 2603.01396 HarmonyCell: Automating Single-Cell Perturbation Modeling under Semantic and Distribution Shifts 2026-03-02 cs.AI;cs.CE;q-bio.QM q-bio.QM https://arxiv.org/abs/2603.01396 False False 2603.01774 Approximate message passing for block-structured ecological systems 2026-03-02 math.PR;q-bio.PE q-bio.PE https://arxiv.org/abs/2603.01774 False False 2603.01774 Approximate message passing for block-structured ecological systems 2026-03-02 math.PR;q-bio.PE q-bio.PE https://arxiv.org/abs/2603.01774 False False 2603.01568 Same Compression Principle, Different Geometry: Rate-Distortion Signatures Dissociate Biological and Artificial Visual Systems 2026-03-02 cs.CV;cs.IT;cs.LG;math.IT;q-bio.NC q-bio.NC https://arxiv.org/abs/2603.01568 False False 2603.01568 Same Compression Principle, Different Geometry: Rate-Distortion Signatures Dissociate Biological and Artificial Visual Systems 2026-03-02 cs.CV;cs.IT;cs.LG;math.IT;q-bio.NC q-bio.NC https://arxiv.org/abs/2603.01568 False False 2603.01184 Scaling of learning time for high dimensional inputs 2026-03-01 cs.AI;cs.LG;q-bio.NC;stat.CO q-bio.NC https://arxiv.org/abs/2603.01184 False False 2603.02274 Contextual Invertible World Models: A Neuro-Symbolic Agentic Framework for Colorectal Cancer Drug Response 2026-03-01 cs.AI;q-bio.QM q-bio.QM https://arxiv.org/abs/2603.02274 False False 2603.03362 Metric-Topology Factorization: A Computational Framework for Hippocampal-Neocortical Intelligence 2026-03-01 q-bio.NC q-bio.NC https://arxiv.org/abs/2603.03362 False False 2603.01186 Relay transitions and invasion thresholds in multi-strain rumor models: a chemical reaction network approach 2026-03-01 math.DS;q-bio.MN q-bio.MN https://arxiv.org/abs/2603.01186 False False 2603.02274 Contextual Invertible World Models: A Neuro-Symbolic Agentic Framework for Colorectal Cancer Drug Response 2026-03-01 cs.AI;q-bio.QM q-bio.QM https://arxiv.org/abs/2603.02274 False False 2603.02274 Contextual Invertible World Models: A Neuro-Symbolic Agentic Framework for Colorectal Cancer Drug Response 2026-03-01 cs.AI;q-bio.QM q-bio.QM https://arxiv.org/abs/2603.02274 False False 2603.02274 Contextual Invertible World Models: A Neuro-Symbolic Agentic Framework for Colorectal Cancer Drug Response 2026-03-01 cs.AI;q-bio.QM q-bio.QM https://arxiv.org/abs/2603.02274 False False 2603.02274 Contextual Invertible World Models: A Neuro-Symbolic Agentic Framework for Colorectal Cancer Drug Response 2026-03-01 cs.AI;q-bio.QM q-bio.QM https://arxiv.org/abs/2603.02274 False False 2603.03362 Metric-Topology Factorization: A Computational Framework for Hippocampal-Neocortical Intelligence 2026-03-01 q-bio.NC q-bio.NC https://arxiv.org/abs/2603.03362 False False 2603.03362 Metric-Topology Factorization: A Computational Framework for Hippocampal-Neocortical Intelligence 2026-03-01 q-bio.NC q-bio.NC https://arxiv.org/abs/2603.03362 False False 2603.00457 Hostility prevents the tragedy of the commons in metapopulation with asymmetric migration: A lesson from queenless ants 2026-02-28 physics.AO;physics.bio-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2603.00457 False False 2603.00566 Modulating biodiversity through higher-order interactions and intraspecific competition in rock-paper-scissors dynamics 2026-02-28 physics.soc-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2603.00566 False False 2603.00614 Designing the Haystack: Programmable Chemical Space for Generative Molecular Discovery 2026-02-28 physics.chem-ph;q-bio.BM;q-bio.QM q-bio.BM https://arxiv.org/abs/2603.00614 False False 2603.00678 From Syntax to Semantics: Geometric Stability as the Missing Axis of Perturbation Biology 2026-02-28 q-bio.CB;q-bio.GN;q-bio.QM q-bio.CB https://arxiv.org/abs/2603.00678 False False 2603.00709 A Closed-loop Framework to Discriminate Models Using Optimal Control 2026-02-28 cs.SY;eess.SY;math.DS;q-bio.QM q-bio.QM https://arxiv.org/abs/2603.00709 False False 2603.00798 Efficient Conformal Volumetry for Template-Based Segmentation 2026-02-28 cs.CV;cs.LG;eess.IV;q-bio.QM q-bio.QM https://arxiv.org/abs/2603.00798 False False 2603.00834 Towards Data-Driven Modeling of Cell Cycle and Wound Closure Processes 2026-02-28 q-bio.CB;q-bio.TO q-bio.CB https://arxiv.org/abs/2603.00834 False False 2603.00678 From Syntax to Semantics: Geometric Stability as the Missing Axis of Perturbation Biology 2026-02-28 q-bio.CB;q-bio.GN;q-bio.QM q-bio.CB https://arxiv.org/abs/2603.00678 False False 2603.00678 From Syntax to Semantics: Geometric Stability as the Missing Axis of Perturbation Biology 2026-02-28 q-bio.CB;q-bio.GN;q-bio.QM q-bio.CB https://arxiv.org/abs/2603.00678 False False 2602.23624 Sex chromosome stability and turnover across vertebrates: a developmental gene regulatory network perspective 2026-02-27 q-bio.MN;q-bio.PE q-bio.MN https://arxiv.org/abs/2602.23624 False False 2602.24106 The interplay of selection and dormancy in a Moran model can lead to coexistence of types 2026-02-27 math.PR;q-bio.PE q-bio.PE https://arxiv.org/abs/2602.24106 False False 2602.24149 What You Read is What You Classify: Highlighting Attributions to Text and Text-Like Inputs 2026-02-27 cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2602.24149 False False 2602.24258 A model of tuberculosis progression using CompuCell3D 2026-02-27 q-bio.QM q-bio.QM https://arxiv.org/abs/2602.24258 False False 2603.00193 Multimodal Alignment Improves Generalizability of Genomic Biomarker Prediction in Computational Pathology 2026-02-27 q-bio.QM q-bio.QM https://arxiv.org/abs/2603.00193 False False 2603.00208 Tipping the Balance: Impact of Class Imbalance Correction on the Performance of Clinical Risk Prediction Models 2026-02-27 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2603.00208 False False 2603.00212 Graph-Based Multi-Omics Integration Improves Subtype Recovery and Survival Prediction Over Classical Integration Strategies in TCGA-BRCA 2026-02-27 q-bio.GN q-bio.GN https://arxiv.org/abs/2603.00212 False False 2603.00213 Inferring brain plasticity rule under long-term stimulation with structured recurrent dynamics 2026-02-27 q-bio.NC q-bio.NC https://arxiv.org/abs/2603.00213 False False 2602.23797 Co-spreading dynamics of smoking behavior and awareness on social contact networks 2026-02-27 physics.soc-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2602.23797 False False 2603.03355 Inhibitory Cross-Talk Enables Functional Lateralization in Attention-Coupled Latent Memory 2026-02-27 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2603.03355 False False 2603.03358 Contextuality, Incompatibility, and Intra-System Entanglement of Mental Markers 2026-02-27 q-bio.NC q-bio.NC https://arxiv.org/abs/2603.03358 False False 2602.24007 Inference-time optimization for experiment-grounded protein ensemble generation 2026-02-27 cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2602.24007 False False 2602.23885 Bounds on $R_0$ and final epidemic size when the next-generation matrix $M$ is only partially known 2026-02-27 q-bio.PE q-bio.PE https://arxiv.org/abs/2602.23885 False False 2603.03354 Non-Invasive Reconstruction of Intracranial EEG Across the Deep Temporal Lobe from Scalp EEG based on Conditional Normalizing Flow 2026-02-27 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2603.03354 False False 2602.24149 What You Read is What You Classify: Highlighting Attributions to Text and Text-Like Inputs 2026-02-27 cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2602.24149 False False 2602.23624 Sex chromosome stability and turnover across vertebrates: a developmental gene regulatory network perspective 2026-02-27 q-bio.MN;q-bio.PE q-bio.MN https://arxiv.org/abs/2602.23624 False False 2603.03354 Non-Invasive Reconstruction of Intracranial EEG Across the Deep Temporal Lobe from Scalp EEG based on Conditional Normalizing Flow 2026-02-27 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2603.03354 False False 2603.03354 Non-Invasive Reconstruction of Intracranial EEG Across the Deep Temporal Lobe from Scalp EEG based on Conditional Normalizing Flow 2026-02-27 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2603.03354 False False 2602.24007 Inference-time optimization for experiment-grounded protein ensemble generation 2026-02-27 cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2602.24007 False False 2602.24007 Inference-time optimization for experiment-grounded protein ensemble generation 2026-02-27 cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2602.24007 False False 2602.22523 Cognitive Models and AI Algorithms Provide Templates for Designing Language Agents 2026-02-26 cs.AI;cs.CL;q-bio.NC q-bio.NC https://arxiv.org/abs/2602.22523 False False 2602.22673 Forecasting Antimicrobial Resistance Trends Using Machine Learning on WHO GLASS Surveillance Data: A Retrieval-Augmented Generation Approach for Policy Decision Support 2026-02-26 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2602.22673 False False 2602.22783 Branching random walks with ageing 2026-02-26 math.PR;q-bio.PE q-bio.PE https://arxiv.org/abs/2602.22783 False False 2602.22855 Non-linear visco-elasto-plastic rheology of a viscous vertex model 2026-02-26 physics.soft;q-bio.TO q-bio.TO https://arxiv.org/abs/2602.22855 False False 2602.22895 SPD Learn: A Geometric Deep Learning Python Library for Neural Decoding Through Trivialization 2026-02-26 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2602.22895 False False 2602.23042 A Single Equation Explains Go-or-Grow Dynamics in Cyclic Hypoxia 2026-02-26 math.AP;q-bio.PE q-bio.PE https://arxiv.org/abs/2602.23042 False False 2602.23179 Induction Meets Biology: Mechanisms of Repeat Detection in Protein Language Models 2026-02-26 cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2602.23179 False False 2602.23202 Collective Dynamics in Spiking Neural Networks Beyond Dale's Principle 2026-02-26 physics.dis-nn;q-bio.NC q-bio.NC https://arxiv.org/abs/2602.23202 0.7539 0.7427 True 6 5.7 False 2602.23268 The selfish ribosome 2026-02-26 q-bio.PE q-bio.PE https://arxiv.org/abs/2602.23268 False False 2602.23269 An Active Learning Framework for Data-Efficient, Human-in-the-Loop Enzyme Function Prediction 2026-02-26 q-bio.QM q-bio.QM https://arxiv.org/abs/2602.23269 False False 2602.23274 Exploiting network topology in brain-scale simulations of spiking neural networks 2026-02-26 cs.DC;q-bio.NC q-bio.NC https://arxiv.org/abs/2602.23274 False False 2602.23324 Discrete turn strategies emerge in information-limited navigation 2026-02-26 physics.bio-ph;physics.stat-mech;q-bio.QM q-bio.QM https://arxiv.org/abs/2602.23324 False False 2602.23344 Learning Contact Policies for SEIR Epidemics on Networks: A Mean-Field Game Approach 2026-02-26 q-bio.PE q-bio.PE https://arxiv.org/abs/2602.23344 False False 2602.22523 Cognitive Models and AI Algorithms Provide Templates for Designing Language Agents 2026-02-26 cs.AI;cs.CL;q-bio.NC q-bio.NC https://arxiv.org/abs/2602.22523 False False 2602.22673 Forecasting Antimicrobial Resistance Trends Using Machine Learning on WHO GLASS Surveillance Data: A Retrieval-Augmented Generation Approach for Policy Decision Support 2026-02-26 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2602.22673 False False 2602.22783 Branching random walks with ageing 2026-02-26 math.PR;q-bio.PE q-bio.PE https://arxiv.org/abs/2602.22783 False False 2602.22855 Non-linear visco-elasto-plastic rheology of a viscous vertex model 2026-02-26 physics.soft;q-bio.TO q-bio.TO https://arxiv.org/abs/2602.22855 False False 2602.22895 SPD Learn: A Geometric Deep Learning Python Library for Neural Decoding Through Trivialization 2026-02-26 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2602.22895 False False 2602.23042 A Single Equation Explains Go-or-Grow Dynamics in Cyclic Hypoxia 2026-02-26 math.AP;q-bio.PE q-bio.PE https://arxiv.org/abs/2602.23042 False False 2602.23179 Induction Meets Biology: Mechanisms of Repeat Detection in Protein Language Models 2026-02-26 cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2602.23179 False False 2602.23202 Collective Dynamics in Spiking Neural Networks Beyond Dale's Principle 2026-02-26 physics.dis-nn;q-bio.NC q-bio.NC https://arxiv.org/abs/2602.23202 0.7539 0.7427 True 6 5.7 False 2602.23269 An Active Learning Framework for Data-Efficient, Human-in-the-Loop Enzyme Function Prediction 2026-02-26 q-bio.QM q-bio.QM https://arxiv.org/abs/2602.23269 False False 2602.23274 Exploiting network topology in brain-scale simulations of spiking neural networks 2026-02-26 cs.DC;q-bio.NC q-bio.NC https://arxiv.org/abs/2602.23274 False False 2602.23324 Discrete turn strategies emerge in information-limited navigation 2026-02-26 physics.bio-ph;physics.stat-mech;q-bio.QM q-bio.QM https://arxiv.org/abs/2602.23324 False False 2602.23396 Complex Networks and the Drug Repositioning Problem 2026-02-26 cs.LG;q-bio.MN q-bio.MN https://arxiv.org/abs/2602.23396 False False 2602.23459 Global Interpretability via Automated Preprocessing: A Framework Inspired by Psychiatric Questionnaires 2026-02-26 cs.LG;q-bio.QM;stat.ML q-bio.QM https://arxiv.org/abs/2602.23459 False False 2602.23268 The selfish ribosome 2026-02-26 q-bio.PE q-bio.PE https://arxiv.org/abs/2602.23268 False False 2602.23410 Brain-OF: An Omnifunctional Foundation Model for fMRI, EEG and MEG 2026-02-26 cs.AI;cs.LG;eess.SP;q-bio.NC q-bio.NC https://arxiv.org/abs/2602.23410 False False 2603.03350 Automated Measurement of Geniohyoid Muscle Thickness During Speech Using Deep Learning and Ultrasound 2026-02-26 cs.LG;cs.SD;eess.AS;q-bio.QM q-bio.QM https://arxiv.org/abs/2603.03350 False False 2602.23344 Learning Contact Policies for SEIR Epidemics on Networks: A Mean-Field Game Approach 2026-02-26 q-bio.PE q-bio.PE https://arxiv.org/abs/2602.23344 False False 2602.23179 Induction Meets Biology: Mechanisms of Repeat Detection in Protein Language Models 2026-02-26 cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2602.23179 False False 2602.23410 Brain-OF: An Omnifunctional Foundation Model for fMRI, EEG and MEG 2026-02-26 cs.AI;cs.LG;eess.SP;q-bio.NC q-bio.NC https://arxiv.org/abs/2602.23410 False False 2602.23410 Brain-OF: An Omnifunctional Foundation Model for fMRI, EEG and MEG 2026-02-26 cs.AI;cs.LG;eess.SP;q-bio.NC q-bio.NC https://arxiv.org/abs/2602.23410 False False 2602.23179 Induction Meets Biology: Mechanisms of Repeat Detection in Protein Language Models 2026-02-26 cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2602.23179 False False 2602.23179 Induction Meets Biology: Mechanisms of Repeat Detection in Protein Language Models 2026-02-26 cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2602.23179 False False 2602.23179 Induction Meets Biology: Mechanisms of Repeat Detection in Protein Language Models 2026-02-26 cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2602.23179 False False 2602.23179 Induction Meets Biology: Mechanisms of Repeat Detection in Protein Language Models 2026-02-26 cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2602.23179 False False 2602.22673 Forecasting Bacterial Antimicrobial Resistance Trends Using Machine Learning on WHO GLASS Surveillance Data: A Retrieval-Augmented Generation Approach for Policy Decision Support 2026-02-26 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2602.22673 False False 2602.22673 Forecasting Bacterial Antimicrobial Resistance Trends Using Machine Learning on WHO GLASS Surveillance Data: A Retrieval-Augmented Generation Approach for Policy Decision Support 2026-02-26 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2602.22673 False False 2602.23324 Discrete turn strategies emerge in information-limited navigation 2026-02-26 physics.bio-ph;physics.stat-mech;q-bio.QM q-bio.QM https://arxiv.org/abs/2602.23324 False False 2602.23324 Discrete turn strategies emerge in information-limited navigation 2026-02-26 physics.bio-ph;physics.stat-mech;q-bio.QM q-bio.QM https://arxiv.org/abs/2602.23324 False False 2602.23274 Exploiting network topology in brain-scale simulations of spiking neural networks 2026-02-26 cs.DC;q-bio.NC q-bio.NC https://arxiv.org/abs/2602.23274 False False 2602.23274 Exploiting network topology in brain-scale simulations of spiking neural networks 2026-02-26 cs.DC;q-bio.NC q-bio.NC https://arxiv.org/abs/2602.23274 False False 2602.23269 An Active Learning Framework for Data-Efficient, Human-in-the-Loop Enzyme Function Prediction 2026-02-26 q-bio.QM q-bio.QM https://arxiv.org/abs/2602.23269 False False 2602.23269 An Active Learning Framework for Data-Efficient, Human-in-the-Loop Enzyme Function Prediction 2026-02-26 q-bio.QM q-bio.QM https://arxiv.org/abs/2602.23269 False False 2602.23179 Induction Meets Biology: Mechanisms of Repeat Detection in Protein Language Models 2026-02-26 cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2602.23179 False False 2602.23179 Induction Meets Biology: Mechanisms of Repeat Detection in Protein Language Models 2026-02-26 cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2602.23179 False False 2602.22855 Non-linear visco-elasto-plastic rheology of a viscous vertex model 2026-02-26 physics.soft;q-bio.TO q-bio.TO https://arxiv.org/abs/2602.22855 False False 2602.22855 Non-linear visco-elasto-plastic rheology of a viscous vertex model 2026-02-26 physics.soft;q-bio.TO q-bio.TO https://arxiv.org/abs/2602.22855 False False 2602.22895 SPD Learn: A Geometric Deep Learning Python Library for Neural Decoding Through Trivialization 2026-02-26 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2602.22895 False False 2602.21462 Effects of Training Data Quality on Classifier Performance 2026-02-25 cs.LG;q-bio.GN;stat.ML q-bio.GN https://arxiv.org/abs/2602.21462 False False 2602.21488 Towards Structure-Aware Surrogate Modeling: Explicit Region Interaction Improves Knee Contact Stress Prediction 2026-02-25 q-bio.TO q-bio.TO https://arxiv.org/abs/2602.21488 False False 2602.21491 Modeling plant disease spread via high-resolution human mobility networks 2026-02-25 physics.soc-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2602.21491 False False 2602.21522 One Brain, Omni Modalities: Towards Unified Non-Invasive Brain Decoding with Large Language Models 2026-02-25 cs.AI;cs.CL;q-bio.NC q-bio.NC https://arxiv.org/abs/2602.21522 False False 2602.21550 Extending Sequence Length is Not All You Need: Effective Integration of Multimodal Signals for Gene Expression Prediction 2026-02-25 cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2602.21550 False False 2602.21594 Asymmetry Demystified: Strict CLFs and Feedbacks for Predator-Prey Interconnections 2026-02-25 cs.SY;eess.SY;q-bio.PE q-bio.PE https://arxiv.org/abs/2602.21594 False False 2602.21648 Multimodal Survival Modeling and Fairness-Aware Clinical Machine Learning for 5-Year Breast Cancer Risk Prediction 2026-02-25 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2602.21648 False False 2602.21758 Limits of optimal decoding under synaptic coarse-tuning 2026-02-25 physics.bio-ph;q-bio.NC q-bio.NC https://arxiv.org/abs/2602.21758 0.7759 0.7466 True 7 7.45 False 2602.21787 Spectral entropy of the discrete Hasimoto effective potential exposes sub-residue geometric transitions in protein secondary structure 2026-02-25 math.MP;physics.PS;physics.bio-ph;physics.math-ph;q-bio.BM q-bio.BM https://arxiv.org/abs/2602.21787 False False 2602.21922 Universal Persistent Brownian Motions in Confluent Tissues 2026-02-25 physics.bio-ph;physics.soft;q-bio.TO q-bio.TO https://arxiv.org/abs/2602.21922 False False 2602.21931 From quantitative modeling of fluorescence experiments on biomolecules to the prediction of spectroscopic dye properties 2026-02-25 physics.bio-ph;q-bio.BM q-bio.BM https://arxiv.org/abs/2602.21931 False False 2602.21993 Prediction of source nutrients for microorganisms using metabolic networks 2026-02-25 q-bio.MN;q-bio.QM q-bio.MN https://arxiv.org/abs/2602.21993 False False 2602.21994 BEDCrypt: Privacy-preserving interval analytics with homomorphic encryption 2026-02-25 q-bio.GN q-bio.GN https://arxiv.org/abs/2602.21994 False False 2602.22263 CryoNet.Refine: A One-step Diffusion Model for Rapid Refinement of Structural Models with Cryo-EM Density Map Restraints 2026-02-25 cs.AI;eess.IV;q-bio.BM;q-bio.QM q-bio.BM https://arxiv.org/abs/2602.22263 False False 2602.22270 Prior Knowledge-enhanced Spatio-temporal Epidemic Forecasting 2026-02-25 cs.LG;q-bio.PE q-bio.PE https://arxiv.org/abs/2602.22270 False False 2602.22281 A kernel for the maximum agreement forest problem on multiple binary phylogenetic trees 2026-02-25 math.CO;q-bio.PE q-bio.PE https://arxiv.org/abs/2602.22281 False False 2602.22289 What Topological and Geometric Structure Do Biological Foundation Models Learn? Evidence from 141 Hypotheses 2026-02-25 cs.LG;q-bio.GN;q-bio.QM q-bio.GN https://arxiv.org/abs/2602.22289 False False 2602.22364 Spatiotemporal bursting in simulated cultures of cortical neurons 2026-02-25 q-bio.NC q-bio.NC https://arxiv.org/abs/2602.22364 False False 2602.22367 Learning geometry-dependent lead-field operators for forward ECG modeling 2026-02-25 cs.AI;cs.LG;cs.NA;math.NA;q-bio.TO q-bio.TO https://arxiv.org/abs/2602.22367 False False 2602.22408 Exploring Human Behavior During Abstract Rule Inference and Problem Solving with the Cognitive Abstraction and Reasoning Corpus 2026-02-25 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2602.22408 False False 2602.22489 Beyond Diagonal Noise: A Better Predator-Prey Modeling Framework with Cross-Covariance 2026-02-25 math.PR;q-bio.PE q-bio.PE https://arxiv.org/abs/2602.22489 False False 2602.22139 From female choice to social structure: Modeling harem formation in camelids 2026-02-25 physics.AO;q-bio.PE q-bio.PE https://arxiv.org/abs/2602.22139 False False 2602.21462 Effects of Training Data Quality on Classifier Performance 2026-02-25 cs.LG;q-bio.GN;stat.ML q-bio.GN https://arxiv.org/abs/2602.21462 False False 2602.21488 Towards Structure-Aware Surrogate Modeling: Explicit Region Interaction Improves Knee Contact Stress Prediction 2026-02-25 q-bio.TO q-bio.TO https://arxiv.org/abs/2602.21488 False False 2602.21491 Modeling plant disease spread via high-resolution human mobility networks 2026-02-25 physics.soc-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2602.21491 False False 2602.21522 One Brain, Omni Modalities: Towards Unified Non-Invasive Brain Decoding with Large Language Models 2026-02-25 cs.AI;cs.CL;q-bio.NC q-bio.NC https://arxiv.org/abs/2602.21522 False False 2602.21550 Extending Sequence Length is Not All You Need: Effective Integration of Multimodal Signals for Gene Expression Prediction 2026-02-25 cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2602.21550 False False 2602.21594 Asymmetry Demystified: Strict CLFs and Feedbacks for Predator-Prey Interconnections 2026-02-25 cs.SY;eess.SY;q-bio.PE q-bio.PE https://arxiv.org/abs/2602.21594 False False 2602.21648 Multimodal Survival Modeling and Fairness-Aware Clinical Machine Learning for 5-Year Breast Cancer Risk Prediction 2026-02-25 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2602.21648 False False 2602.21758 Limits of optimal decoding under synaptic coarse-tuning 2026-02-25 physics.bio-ph;q-bio.NC q-bio.NC https://arxiv.org/abs/2602.21758 0.7759 0.7466 True 7 7.45 False 2602.21787 Spectral entropy of the discrete Hasimoto effective potential exposes sub-residue geometric transitions in protein secondary structure 2026-02-25 math.MP;physics.PS;physics.bio-ph;physics.math-ph;q-bio.BM q-bio.BM https://arxiv.org/abs/2602.21787 False False 2602.21922 Universal Persistent Brownian Motions in Confluent Tissues 2026-02-25 physics.bio-ph;physics.soft;q-bio.TO q-bio.TO https://arxiv.org/abs/2602.21922 False False 2602.21931 From quantitative modeling of fluorescence experiments on biomolecules to the prediction of spectroscopic dye properties 2026-02-25 physics.bio-ph;q-bio.BM q-bio.BM https://arxiv.org/abs/2602.21931 False False 2602.21993 Prediction of source nutrients for microorganisms using metabolic networks 2026-02-25 q-bio.MN;q-bio.QM q-bio.MN https://arxiv.org/abs/2602.21993 False False 2602.21994 BEDCrypt: Privacy-preserving interval analytics with homomorphic encryption 2026-02-25 q-bio.GN q-bio.GN https://arxiv.org/abs/2602.21994 False False 2602.22270 Prior Knowledge-enhanced Spatio-temporal Epidemic Forecasting 2026-02-25 cs.LG;q-bio.PE q-bio.PE https://arxiv.org/abs/2602.22270 False False 2602.22281 A kernel for the maximum agreement forest problem on multiple binary phylogenetic trees 2026-02-25 math.CO;q-bio.PE q-bio.PE https://arxiv.org/abs/2602.22281 False False 2602.22364 Spatiotemporal bursting in simulated cultures of cortical neurons 2026-02-25 q-bio.NC q-bio.NC https://arxiv.org/abs/2602.22364 False False 2602.22367 Learning geometry-dependent lead-field operators for forward ECG modeling 2026-02-25 cs.AI;cs.LG;cs.NA;math.NA;q-bio.TO q-bio.TO https://arxiv.org/abs/2602.22367 False False 2602.22408 Exploring Human Behavior During Abstract Rule Inference and Problem Solving with the Cognitive Abstraction and Reasoning Corpus 2026-02-25 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2602.22408 False False 2602.22489 Beyond Diagonal Noise: A Better Predator-Prey Modeling Framework with Cross-Covariance 2026-02-25 math.PR;q-bio.PE q-bio.PE https://arxiv.org/abs/2602.22489 False False 2602.22139 From female choice to social structure: Modeling harem formation in camelids 2026-02-25 physics.AO;q-bio.PE q-bio.PE https://arxiv.org/abs/2602.22139 False False 2603.03347 Efficient Coding Predicts Synaptic Conductance 2026-02-25 q-bio.NC q-bio.NC https://arxiv.org/abs/2603.03347 False False 2602.22289 What Topological and Geometric Structure Do Biological Foundation Models Learn? Evidence from 141 Hypotheses 2026-02-25 cs.LG;q-bio.GN;q-bio.QM q-bio.GN https://arxiv.org/abs/2602.22289 False False 2603.06639 RECAP: Local Hebbian Prototype Learning as a Self-Organizing Readout for Reservoir Dynamics 2026-02-25 cs.AI;cs.CV;cs.LG;cs.NE;q-bio.NC q-bio.NC https://arxiv.org/abs/2603.06639 False False 2602.22263 CryoNet.Refine: A One-step Diffusion Model for Rapid Refinement of Structural Models with Cryo-EM Density Map Restraints 2026-02-25 cs.AI;eess.IV;q-bio.BM;q-bio.QM q-bio.BM https://arxiv.org/abs/2602.22263 False False 2602.21550 Extending Sequence Length is Not All You Need: Effective Integration of Multimodal Signals for Gene Expression Prediction 2026-02-25 cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2602.21550 False False 2603.16884 Macro-Micro Inference: Robust Synaptic Classification via Spike-Triggered Extrapolation 2026-02-25 math.PR;math.ST;q-bio.NC;stat.TH q-bio.NC https://arxiv.org/abs/2603.16884 False False 2602.22281 A kernel for the maximum agreement forest problem on multiple binary phylogenetic trees 2026-02-25 math.CO;q-bio.PE q-bio.PE https://arxiv.org/abs/2602.22281 False False 2602.21922 Universal Persistent Brownian Motions in Confluent Tissues 2026-02-25 physics.bio-ph;physics.soft;q-bio.TO q-bio.TO https://arxiv.org/abs/2602.21922 False False 2602.21922 Universal Persistent Brownian Motions in Confluent Tissues 2026-02-25 physics.bio-ph;physics.soft;q-bio.TO q-bio.TO https://arxiv.org/abs/2602.21922 False False 2603.16884 Synaptic Classification via Spike-Triggered Extrapolation 2026-02-25 math.PR;math.ST;q-bio.NC;stat.TH q-bio.NC https://arxiv.org/abs/2603.16884 False False 2603.16884 Synaptic Classification via Spike-Triggered Extrapolation 2026-02-25 math.PR;math.ST;q-bio.NC;stat.TH q-bio.NC https://arxiv.org/abs/2603.16884 False False 2603.03347 Efficient Coding Predicts Synaptic Conductance 2026-02-25 q-bio.NC q-bio.NC https://arxiv.org/abs/2603.03347 False False 2602.21787 Sub-residue sharpness of protein helix-coil transitions reveals a spatial-spectral uncertainty limit 2026-02-25 math.MP;physics.PS;physics.bio-ph;physics.math-ph;q-bio.BM q-bio.BM https://arxiv.org/abs/2602.21787 False False 2603.03347 Efficient Coding Predicts Synaptic Conductance 2026-02-25 q-bio.NC q-bio.NC https://arxiv.org/abs/2603.03347 False False 2602.21787 Sub-residue sharpness of protein helix-coil transitions reveals a spatial-spectral uncertainty limit 2026-02-25 math.MP;physics.PS;physics.bio-ph;physics.math-ph;q-bio.BM q-bio.BM https://arxiv.org/abs/2602.21787 False False 2602.22270 Prior Knowledge-enhanced Spatio-temporal Epidemic Forecasting 2026-02-25 cs.LG;q-bio.PE q-bio.PE https://arxiv.org/abs/2602.22270 False False 2602.22270 Prior Knowledge-enhanced Spatio-temporal Epidemic Forecasting 2026-02-25 cs.LG;q-bio.PE q-bio.PE https://arxiv.org/abs/2602.22270 False False 2602.22281 A kernel for the maximum agreement forest problem on multiple binary phylogenetic trees 2026-02-25 math.CO;q-bio.PE q-bio.PE https://arxiv.org/abs/2602.22281 False False 2602.22281 A kernel for the maximum agreement forest problem on multiple binary phylogenetic trees 2026-02-25 math.CO;q-bio.PE q-bio.PE https://arxiv.org/abs/2602.22281 False False 2602.22364 Spatiotemporal bursting in simulated cultures of cortical neurons 2026-02-25 q-bio.NC q-bio.NC https://arxiv.org/abs/2602.22364 False False 2602.22364 Spatiotemporal bursting in simulated cultures of cortical neurons 2026-02-25 q-bio.NC q-bio.NC https://arxiv.org/abs/2602.22364 False False 2602.21787 Spectral analysis of protein backbone geometry reveals abrupt helix--coil boundaries 2026-02-25 math.MP;physics.PS;physics.bio-ph;physics.math-ph;q-bio.BM q-bio.BM https://arxiv.org/abs/2602.21787 False False 2602.21787 Spectral analysis of protein backbone geometry reveals abrupt helix--coil boundaries 2026-02-25 math.MP;physics.PS;physics.bio-ph;physics.math-ph;q-bio.BM q-bio.BM https://arxiv.org/abs/2602.21787 False False 2602.21393 An information-based model selection criterion for data-driven model discovery 2026-02-24 q-bio.QM q-bio.QM https://arxiv.org/abs/2602.21393 False False 2602.22239 VAE-MS: An Asymmetric Variational Autoencoder for Mutational Signature Extraction 2026-02-24 cs.LG;q-bio.GN;stat.AP q-bio.GN https://arxiv.org/abs/2602.22239 False False 2602.22247 Multi-Dimensional Spectral Geometry of Biological Knowledge in Single-Cell Transformer Representations 2026-02-24 cs.AI;cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2602.22247 False False 2602.20449 Protein Language Models Diverge from Natural Language: Comparative Analysis and Improved Inference 2026-02-24 cs.AI;cs.CL;cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2602.20449 False False 2602.20495 Unveiling Scaling Laws of Parameter Identifiability and Uncertainty Quantification in Data-Driven Biological Modeling 2026-02-24 q-bio.QM q-bio.QM https://arxiv.org/abs/2602.20495 False False 2602.20702 Tipping points in complex ecological systems 2026-02-24 physics.CD;physics.bio-ph;physics.stat-mech;q-bio.PE q-bio.PE https://arxiv.org/abs/2602.20702 False False 2602.20883 Adaptation by Cumulative Selection 2026-02-24 q-bio.PE q-bio.PE https://arxiv.org/abs/2602.20883 False False 2602.21150 Age Structured Epidemic Model under Vaccination with Vector Transmission 2026-02-24 q-bio.PE q-bio.PE https://arxiv.org/abs/2602.21150 False False 2602.21393 An information-based model selection criterion for data-driven model discovery 2026-02-24 q-bio.QM q-bio.QM https://arxiv.org/abs/2602.21393 False False 2602.22239 VAE-MS: An Asymmetric Variational Autoencoder for Mutational Signature Extraction 2026-02-24 cs.LG;q-bio.GN;stat.AP q-bio.GN https://arxiv.org/abs/2602.22239 False False 2602.22247 Multi-Dimensional Spectral Geometry of Biological Knowledge in Single-Cell Transformer Representations 2026-02-24 cs.AI;cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2602.22247 False False 2603.03345 Characterization of Phase Transitions in a Lipkin-Meshkov-Glick Quantum Brain Model 2026-02-24 physics.comp-ph;physics.quant-ph;q-bio.NC q-bio.NC https://arxiv.org/abs/2603.03345 False False 2603.16880 NeuroNarrator: A Generalist EEG-to-Text Foundation Model for Clinical Interpretation via Spectro-Spatial Grounding and Temporal State-Space Reasoning 2026-02-24 cs.CL;cs.LG;eess.SP;q-bio.NC q-bio.NC https://arxiv.org/abs/2603.16880 False False 2602.21150 Age Structured Epidemic Model under Vaccination with Vector Transmission 2026-02-24 q-bio.PE q-bio.PE https://arxiv.org/abs/2602.21150 False False 2602.21150 Age Structured Epidemic Model under Vaccination with Vector Transmission 2026-02-24 q-bio.PE q-bio.PE https://arxiv.org/abs/2602.21150 False False 2602.22236 CrossLLM-Mamba: Multimodal State Space Fusion of LLMs for RNA Interaction Prediction 2026-02-23 cs.CV;cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2602.22236 False False 2602.19521 A mathematical model for the role of macrophage chemotactic emigration in the early atherosclerotic plaque 2026-02-23 q-bio.CB q-bio.CB https://arxiv.org/abs/2602.19521 False False 2602.19775 Exact Discrete Stochastic Simulation with Deep-Learning-Scale Gradient Optimization 2026-02-23 cs.LG;physics.comp-ph;physics.stat-mech;q-bio.MN;q-bio.QM q-bio.MN https://arxiv.org/abs/2602.19775 False False 2602.20209 Regressor-guided Diffusion Model for De Novo Peptide Sequencing with Explicit Mass Control 2026-02-23 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2602.20209 False False 2602.20218 Targeted T2-FLAIR Dropout Training Improves Robustness of nnU-Net Glioblastoma Segmentation to Missing T2-FLAIR 2026-02-23 eess.IV;q-bio.QM q-bio.QM https://arxiv.org/abs/2602.20218 False False 2602.20266 Multiple Poisson-Dirichlet diffusions on generalized Kingman simplices 2026-02-23 math.PR;math.ST;q-bio.PE;stat.TH q-bio.PE https://arxiv.org/abs/2602.20266 False False 2602.20289 The Sim-to-Real Gap in MRS Quantification: A Systematic Deep Learning Validation for GABA 2026-02-23 cs.LG;eess.SP;q-bio.QM q-bio.QM https://arxiv.org/abs/2602.20289 False False 2602.20344 Hierarchical Molecular Representation Learning via Fragment-Based Self-Supervised Embedding Prediction 2026-02-23 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2602.20344 False False 2602.22236 CrossLLM-Mamba: Multimodal State Space Fusion of LLMs for RNA Interaction Prediction 2026-02-23 cs.CV;cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2602.22236 False False 2603.06628 Weakly nonlinear analysis of a reaction-diffusion model for demyelinating lesions in Multiple Sclerosis 2026-02-23 q-bio.TO q-bio.TO https://arxiv.org/abs/2603.06628 False False 2602.20218 Robust Glioblastoma Segmentation Without T2-FLAIR: External Validation of Targeted Dropout Training 2026-02-23 eess.IV;q-bio.QM q-bio.QM https://arxiv.org/abs/2602.20218 False False 2602.20218 Robust Glioblastoma Segmentation Without T2-FLAIR: External Validation of Targeted Dropout Training 2026-02-23 eess.IV;q-bio.QM q-bio.QM https://arxiv.org/abs/2602.20218 False False 2602.20218 Robust Glioblastoma Segmentation and Volumetry Without T2-FLAIR: External Validation of Targeted Dropout Training 2026-02-23 eess.IV;q-bio.QM q-bio.QM https://arxiv.org/abs/2602.20218 False False 2602.20218 Robust Glioblastoma Segmentation and Volumetry Without T2-FLAIR: External Validation of Targeted Dropout Training 2026-02-23 eess.IV;q-bio.QM q-bio.QM https://arxiv.org/abs/2602.20218 False False 2602.20266 Multiple Poisson-Dirichlet diffusions on generalized Kingman simplices 2026-02-23 math.PR;math.ST;q-bio.PE;stat.TH q-bio.PE https://arxiv.org/abs/2602.20266 False False 2602.22235 Unsupervised Denoising of Diffusion-Weighted Images with Bias and Variance Corrected Noise Modeling 2026-02-22 cs.AI;eess.IV;q-bio.QM q-bio.QM https://arxiv.org/abs/2602.22235 False False 2602.19023 Critical Scaling and Metabolic Regulation in a Ginzburg--Landau Theory of Cognitive Dynamics 2026-02-22 physics.bio-ph;physics.stat-mech;q-bio.NC q-bio.NC https://arxiv.org/abs/2602.19023 False False 2602.19138 CRCC: Contrast-Based Robust Cross-Subject and Cross-Site Representation Learning for EEG 2026-02-22 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2602.19138 False False 2602.19196 An Interpretable Data-Driven Model of the Flight Dynamics of Hawks 2026-02-22 cs.CE;cs.LG;physics.flu-dyn;q-bio.QM q-bio.QM https://arxiv.org/abs/2602.19196 False False 2602.19295 Time-Varying Hazard Patterns and Co-Mutation Profiles of KRAS G12C and G12D in Real-World NSCLC 2026-02-22 q-bio.QM;stat.AP;stat.ME q-bio.QM https://arxiv.org/abs/2602.19295 False False 2602.20198 KEMP-PIP: A Feature-Fusion Based Approach for Pro-inflammatory Peptide Prediction 2026-02-22 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2602.20198 False False 2602.22235 Unsupervised Denoising of Diffusion-Weighted Images with Bias and Variance Corrected Noise Modeling 2026-02-22 cs.AI;eess.IV;q-bio.QM q-bio.QM https://arxiv.org/abs/2602.22235 False False 2603.03343 Neuro-Symbolic Decoding of Neural Activity 2026-02-22 cs.AI;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2603.03343 False False 2602.18690 Neural Fields as World Models 2026-02-21 cs.CV;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2602.18690 False False 2602.18715 A Data-Driven Method to Map the Functional Organisation of Human Brain White Matter 2026-02-21 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2602.18715 False False 2602.18727 Statistical methods for reference-free single-molecule localisation microscopy 2026-02-21 q-bio.QM;stat.AP q-bio.QM https://arxiv.org/abs/2602.18727 False False 2602.18787 From Modules to Movement: Deconstructing the Modular Architecture of the Motor System 2026-02-21 q-bio.NC q-bio.NC https://arxiv.org/abs/2602.18787 False False 2602.18854 Modeling Dynamics, Cell Type Specificity, and Perturbations in Gene Regulatory Networks 2026-02-21 q-bio.MN q-bio.MN https://arxiv.org/abs/2602.18854 False False 2602.18909 Geometric Limits of Mitotic Pressure Under Confinement 2026-02-21 physics.bio-ph;physics.soft;q-bio.CB q-bio.CB https://arxiv.org/abs/2602.18909 False False 2602.18915 AAVGen: Precision Engineering of Adeno-associated Viral Capsids for Renal Selective Targeting 2026-02-21 cs.AI;cs.CL;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2602.18915 False False 2602.18932 Convex Analysis of Relaxation Dynamics in Chemical Reaction Networks and Generalized Gradient Flows 2026-02-21 math.DG;math.OC;physics.chem-ph;physics.stat-mech;q-bio.MN q-bio.MN https://arxiv.org/abs/2602.18932 False False 2602.18942 Feasibility as a moving target: Fluctuating species interactions lead to universal power law in equilibrium abundances 2026-02-21 physics.bio-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2602.18942 False False 2602.18960 Modularity is the Bedrock of Natural and Artificial Intelligence 2026-02-21 cs.AI;cs.NE;q-bio.NC q-bio.NC https://arxiv.org/abs/2602.18960 False False 2602.18889 Topological shape transform for thymus structures 2026-02-21 math.AT;q-bio.QM q-bio.QM https://arxiv.org/abs/2602.18889 False False 2602.18982 Conditionally Site-Independent Neural Evolution of Antibody Sequences 2026-02-21 cs.LG;q-bio.PE q-bio.PE https://arxiv.org/abs/2602.18982 False False 2602.18982 Conditionally Site-Independent Neural Evolution of Antibody Sequences 2026-02-21 cs.LG;q-bio.PE q-bio.PE https://arxiv.org/abs/2602.18982 False False 2602.18889 Topological shape transform for thymus structures 2026-02-21 math.AT;q-bio.QM q-bio.QM https://arxiv.org/abs/2602.18889 False False 2602.18982 Conditionally Site-Independent Neural Evolution of Antibody Sequences 2026-02-21 cs.LG;q-bio.PE q-bio.PE https://arxiv.org/abs/2602.18982 False False 2602.18982 Conditionally Site-Independent Neural Evolution of Antibody Sequences 2026-02-21 cs.LG;q-bio.PE q-bio.PE https://arxiv.org/abs/2602.18982 False False 2602.18690 Neural Fields as World Models 2026-02-21 cs.CV;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2602.18690 False False 2602.18889 Topological shape transform for thymus structures 2026-02-21 math.AT;q-bio.QM q-bio.QM https://arxiv.org/abs/2602.18889 False False 2602.18889 Topological shape transform for thymus structures 2026-02-21 math.AT;q-bio.QM q-bio.QM https://arxiv.org/abs/2602.18889 False False 2602.18203 Metrology of Complexity and Implications for the Study of the Emergence of Life 2026-02-20 q-bio.BM q-bio.BM https://arxiv.org/abs/2602.18203 False False 2602.18265 Emergence of generic first-passage time distributions for large Markovian networks 2026-02-20 physics.bio-ph;physics.stat-mech;q-bio.MN q-bio.MN https://arxiv.org/abs/2602.18265 False False 2602.18401 Leakage and Second-Order Dynamics Improve Hippocampal RNN Replay 2026-02-20 cs.AI;cs.LG;q-bio.NC;stat.ML q-bio.NC https://arxiv.org/abs/2602.18401 False False 2602.18637 Online decoding of rat self-paced locomotion speed from EEG using recurrent neural networks 2026-02-20 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2602.18637 False False 2602.18643 Project Hermes: A Model-Agnostic Validation Layer for Wearable Health Prediction Systems 2026-02-20 q-bio.QM q-bio.QM https://arxiv.org/abs/2602.18643 False False 2603.04440 A systematic approach to answering the easy problems of consciousness based on an executable cognitive system 2026-02-20 cs.AI;cs.ET;q-bio.NC q-bio.NC https://arxiv.org/abs/2603.04440 False False 2603.06618 Distilling and Adapting: A Topology-Aware Framework for Zero-Shot Interaction Prediction in Multiplex Biological Networks 2026-02-20 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2603.06618 False False 2602.18265 Emergence of generic first-passage time distributions for large Markovian networks 2026-02-20 physics.bio-ph;physics.stat-mech;q-bio.MN q-bio.MN https://arxiv.org/abs/2602.18265 False False 2602.18265 Emergence of generic first-passage time distributions for large Markovian networks 2026-02-20 physics.bio-ph;physics.stat-mech;q-bio.MN q-bio.MN https://arxiv.org/abs/2602.18265 False False 2602.18265 Emergence of generic first-passage time distributions for large Markovian networks 2026-02-20 physics.bio-ph;physics.stat-mech;q-bio.MN q-bio.MN https://arxiv.org/abs/2602.18265 False False 2602.17162 JEPA-DNA: Grounding Genomic Foundation Models through Joint-Embedding Predictive Architectures 2026-02-19 cs.AI;q-bio.GN q-bio.GN https://arxiv.org/abs/2602.17162 False False 2602.17532 Systematic Evaluation of Single-Cell Foundation Model Interpretability Reveals Attention Captures Co-Expression Rather Than Unique Regulatory Signal 2026-02-19 cs.AI;q-bio.GN q-bio.GN https://arxiv.org/abs/2602.17532 False False 2602.17747 AgriVariant: Variant Effect Prediction using DeepChem-Variant for Precision Breeding in Rice 2026-02-19 cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2602.17747 False False 2602.17820 Scaling and tuning to criticality in resting-state human magnetoencephalography 2026-02-19 physics.bio-ph;physics.dis-nn;physics.stat-mech;q-bio.NC q-bio.NC https://arxiv.org/abs/2602.17820 False False 2602.17866 Simple non-invasive methods for obtaining the intensity and timing of arterial pulse waves 2026-02-19 physics.med-ph;q-bio.TO q-bio.TO https://arxiv.org/abs/2602.17866 False False 2602.17557 Probability-Invariant Random Walk Learning on Gyral Folding-Based Cortical Similarity Networks for Alzheimer's and Lewy Body Dementia Diagnosis 2026-02-19 cs.AI;cs.CV;q-bio.NC q-bio.NC https://arxiv.org/abs/2602.17557 False False 2602.18510 Experimental and numerical modeling of liposome congregation in meteorite craters of Early Earth 2026-02-19 physics.EP;physics.IM;q-bio.PE q-bio.PE https://arxiv.org/abs/2602.18510 False False 2602.17265 Spatio-temporal air flow properties in a 3D personalised model of the human lung 2026-02-19 physics.bio-ph;q-bio.TO q-bio.TO https://arxiv.org/abs/2602.17265 False False 2602.17739 GeneZip: Region-Aware Compression for Long Context DNA Modeling 2026-02-19 cs.AI;cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2602.17739 False False 2603.02241 A Benchmark Analysis of Graph and Non-Graph Methods for Caenorhabditis Elegans Neuron Classification 2026-02-19 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2603.02241 False False 2602.17820 Scaling and tuning to criticality in resting-state human magnetoencephalography 2026-02-19 physics.bio-ph;physics.dis-nn;physics.stat-mech;q-bio.NC q-bio.NC https://arxiv.org/abs/2602.17820 False False 2602.17265 Spatio-temporal air flow properties in a 3D personalised model of the human lung 2026-02-19 physics.bio-ph;q-bio.TO q-bio.TO https://arxiv.org/abs/2602.17265 False False 2602.17739 GeneZip: Region-Aware Compression for Long Context DNA Modeling 2026-02-19 cs.AI;cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2602.17739 False False 2602.17739 GeneZip: Region-Aware Compression for Long Context DNA Modeling 2026-02-19 cs.AI;cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2602.17739 False False 2602.17162 JEPA-DNA: Grounding Genomic Foundation Models through Joint-Embedding Predictive Architectures 2026-02-19 cs.AI;q-bio.GN q-bio.GN https://arxiv.org/abs/2602.17162 False False 2602.17162 JEPA-DNA: Grounding Genomic Foundation Models through Joint-Embedding Predictive Architectures 2026-02-19 cs.AI;q-bio.GN q-bio.GN https://arxiv.org/abs/2602.17162 False False 2602.16129 Oscillation Criteria in Large-Scale Gene Regulatory Networks with Intrinsic Fluctuations 2026-02-18 q-bio.MN q-bio.MN https://arxiv.org/abs/2602.16129 False False 2602.16282 Neutral species facilitate coexistence among cyclically competing species under birth and death processes 2026-02-18 physics.soc-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2602.16282 False False 2602.16357 Optical Inversion and Spectral Unmixing of Spectroscopic Photoacoustic Images with Physics-Informed Neural Networks 2026-02-18 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2602.16357 False False 2602.16447 Evolutionary Advantage of Diversity-Generating Retroelements in Switching Environments 2026-02-18 physics.stat-mech;q-bio.PE q-bio.PE https://arxiv.org/abs/2602.16447 False False 2602.16504 GRIMM: Genetic stRatification for Inference in Molecular Modeling 2026-02-18 q-bio.QM q-bio.QM https://arxiv.org/abs/2602.16504 False False 2602.16584 The Representational Alignment Hypothesis: Evidence for and Consequences of Invariant Semantic Structure Across Embedding Modalities 2026-02-18 q-bio.NC q-bio.NC https://arxiv.org/abs/2602.16584 False False 2602.16626 A Systematic Evaluation of Sample-Level Tokenization Strategies for MEG Foundation Models 2026-02-18 cs.AI;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2602.16626 False False 2602.16633 Behavioral change models for infectious disease transmission: a systematic review (2020-2025) 2026-02-18 q-bio.PE q-bio.PE https://arxiv.org/abs/2602.16633 False False 2602.16696 Parameter-free representations outperform single-cell foundation models on downstream benchmarks 2026-02-18 cs.LG;q-bio.GN;q-bio.QM q-bio.GN https://arxiv.org/abs/2602.16696 False False 2602.16749 U-FedTomAtt: Ultra-lightweight Federated Learning with Attention for Tomato Disease Recognition 2026-02-18 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2602.16749 False False 2602.16887 Construction of a classification model for dementia among Brazilian adults aged 50 and over 2026-02-18 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2602.16887 False False 2602.18507 Fine-Pruning: A Biologically Inspired Algorithm for Personalization of Machine Learning Models 2026-02-18 cs.NE;q-bio.NC q-bio.NC https://arxiv.org/abs/2602.18507 False False 2602.16255 Piecewise integrability of the discrete Hasimoto map for analytic prediction and design of helical peptides 2026-02-18 math.MP;physics.PS;physics.SI;physics.math-ph;q-bio.BM q-bio.BM https://arxiv.org/abs/2602.16255 False False 2603.03342 Cryo-SWAN: the Multi-Scale Wavelet-decomposition-inspired Autoencoder Network for molecular density representation of molecular volumes 2026-02-18 cs.AI;eess.IV;q-bio.BM q-bio.BM https://arxiv.org/abs/2603.03342 False False 2602.16129 Oscillation Criteria in Large-Scale Gene Regulatory Networks with Intrinsic Fluctuations 2026-02-18 q-bio.MN q-bio.MN https://arxiv.org/abs/2602.16129 False False 2602.15447 Household size can explain 40% of the variance in cumulative COVID-19 incidence across Europe 2026-02-17 math.DS;physics.soc-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2602.15447 False False 2602.15451 Molecular Design beyond Training Data with Novel Extended Objective Functionals of Generative AI Models Driven by Quantum Annealing Computer 2026-02-17 cs.AI;cs.LG;physics.quant-ph;q-bio.QM q-bio.QM https://arxiv.org/abs/2602.15451 False False 2602.15691 Relating biomarkers and phenotypes using dynamical trap spaces 2026-02-17 q-bio.MN q-bio.MN https://arxiv.org/abs/2602.15691 False False 2602.15740 MRC-GAT: A Meta-Relational Copula-Based Graph Attention Network for Interpretable Multimodal Alzheimer's Disease Diagnosis 2026-02-17 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2602.15740 False False 2602.15787 Energy budgets govern synaptic precision and its regulation during plasticity 2026-02-17 q-bio.NC q-bio.NC https://arxiv.org/abs/2602.15787 False False 2602.15957 Evolutionary Systems Thinking -- From Equilibrium Models to Open-Ended Adaptive Dynamics 2026-02-17 cs.NE;econ.TH;q-bio.PE q-bio.PE https://arxiv.org/abs/2602.15957 False False 2602.16004 Time-Varying Directed Interactions in Functional Brain Networks: Modeling and Validation 2026-02-17 q-bio.NC;q-bio.QM q-bio.NC https://arxiv.org/abs/2602.16004 False False 2602.16022 The lingering phenomenon and pattern formation in a nonlocal population model with cognitive map 2026-02-17 math.AP;q-bio.PE q-bio.PE https://arxiv.org/abs/2602.16022 False False 2602.16059 Properties of biodiversity indices that model future extinction risk 2026-02-17 q-bio.PE q-bio.PE https://arxiv.org/abs/2602.16059 False False 2602.16072 Omni-iEEG: A Large-Scale, Comprehensive iEEG Dataset and Benchmark for Epilepsy Research 2026-02-17 cs.AI;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2602.16072 False False 2602.16724 Tracing protein and proteome history with chronologies and networks: folding recapitulates evolution 2026-02-17 q-bio.QM q-bio.QM https://arxiv.org/abs/2602.16724 False False 2602.16728 FUNGAR: a pipeline for detecting antifungal resistance mutations directly from metagenomic short reads 2026-02-17 q-bio.GN q-bio.GN https://arxiv.org/abs/2602.16728 False False 2602.16737 Exploring the Utility of MALDI-TOF Mass Spectrometry and Antimicrobial Resistance in Hospital Outbreak Detection 2026-02-17 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2602.16737 False False 2602.15677 CAMEL: An ECG Language Model for Forecasting Cardiac Events 2026-02-17 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2602.15677 False False 2603.00097 Exploring Drug Safety Through Knowledge Graphs: Protein Kinase Inhibitors as a Case Study 2026-02-17 cs.AI;cs.CE;cs.IR;cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2603.00097 False False 2602.15677 CAMEL: An ECG Language Model for Forecasting Cardiac Events 2026-02-17 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2602.15677 False False 2602.15451 Molecular Design beyond Training Data with Novel Extended Objective Functionals of Generative AI Models Driven by Quantum Annealing Computer 2026-02-17 cs.AI;cs.LG;physics.quant-ph;q-bio.QM q-bio.QM https://arxiv.org/abs/2602.15451 False False 2602.15451 Molecular Design beyond Training Data with Novel Extended Objective Functionals of Generative AI Models Driven by Quantum Annealing Computer 2026-02-17 cs.AI;cs.LG;physics.quant-ph;q-bio.QM q-bio.QM https://arxiv.org/abs/2602.15451 False False 2602.15451 Molecular Design beyond Training Data with Novel Extended Objective Functionals of Generative AI Models Driven by Quantum Annealing Computer 2026-02-17 cs.AI;cs.LG;physics.quant-ph;q-bio.QM q-bio.QM https://arxiv.org/abs/2602.15451 False False 2602.15451 Molecular Design beyond Training Data with Novel Extended Objective Functionals of Generative AI Models Driven by Quantum Annealing Computer 2026-02-17 cs.AI;cs.LG;physics.quant-ph;q-bio.QM q-bio.QM https://arxiv.org/abs/2602.15451 False False 2602.16059 Properties of biodiversity indices that incorporate future extinction risk 2026-02-17 q-bio.PE q-bio.PE https://arxiv.org/abs/2602.16059 False False 2602.16059 Properties of biodiversity indices that incorporate future extinction risk 2026-02-17 q-bio.PE q-bio.PE https://arxiv.org/abs/2602.16059 False False 2602.15957 Evolutionary Systems Thinking: From Equilibrium Models to Open-Ended Adaptive Dynamics 2026-02-17 cs.NE;econ.TH;q-bio.PE q-bio.PE https://arxiv.org/abs/2602.15957 False False 2602.15957 Evolutionary Systems Thinking: From Equilibrium Models to Open-Ended Adaptive Dynamics 2026-02-17 cs.NE;econ.TH;q-bio.PE q-bio.PE https://arxiv.org/abs/2602.15957 False False 2602.14562 Infection models on dense dynamic random graphs 2026-02-16 math.PR;q-bio.PE q-bio.PE https://arxiv.org/abs/2602.14562 False False 2602.14616 Higher-Order Hit-&-Run Samplers for Linearly Constrained Densities 2026-02-16 q-bio.QM;stat.AP;stat.CO q-bio.QM https://arxiv.org/abs/2602.14616 False False 2602.14645 Conditions for Bacterial Selection and Extinction Driven by Growth-Kill Trade-Off in Cyclic Antimicrobial Treatments 2026-02-16 q-bio.PE q-bio.PE https://arxiv.org/abs/2602.14645 False False 2602.14828 Exploring the limits of pre-trained embeddings in machine-guided protein design: a case study on predicting AAV vector viability 2026-02-16 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2602.14828 False False 2602.14843 Evolutionarily Primitive Social Entities 2026-02-16 q-bio.NC q-bio.NC https://arxiv.org/abs/2602.14843 False False 2602.14863 Quasilocalization under coupled mutation-selection dynamics 2026-02-16 q-bio.PE q-bio.PE https://arxiv.org/abs/2602.14863 False False 2602.14885 Drift-Diffusion Matching: Embedding dynamics in latent manifolds of asymmetric neural networks 2026-02-16 cs.LG;physics.dis-nn;physics.stat-mech;q-bio.NC q-bio.NC https://arxiv.org/abs/2602.14885 False False 2602.15022 Rethinking Diffusion Models with Symmetries through Canonicalization with Applications to Molecular Graph Generation 2026-02-16 cs.AI;cs.LG;math.GR;q-bio.BM q-bio.BM https://arxiv.org/abs/2602.15022 False False 2602.15253 Scaling Laws for Masked-Reconstruction Transformers on Single-Cell Transcriptomics 2026-02-16 cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2602.15253 False False 2602.15266 A golden-ratio partition of information and the balance between prediction and surprise: a neuro-cognitive route to antifragility 2026-02-16 math.DS;q-bio.NC q-bio.NC https://arxiv.org/abs/2602.15266 False False 2602.14828 Exploring the limits of pre-trained embeddings in machine-guided protein design: a case study on predicting AAV vector viability 2026-02-16 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2602.14828 False False 2602.14863 Quasilocalization under coupled mutation-selection dynamics 2026-02-16 q-bio.PE q-bio.PE https://arxiv.org/abs/2602.14863 False False 2602.14863 Quasilocalization under coupled mutation-selection dynamics 2026-02-16 q-bio.PE q-bio.PE https://arxiv.org/abs/2602.14863 False False 2602.14885 Drift-Diffusion Matching: Embedding dynamics in latent manifolds of asymmetric neural networks 2026-02-16 cs.LG;physics.dis-nn;physics.stat-mech;q-bio.NC q-bio.NC https://arxiv.org/abs/2602.14885 False False 2602.14885 Drift-Diffusion Matching: Embedding dynamics in latent manifolds of asymmetric neural networks 2026-02-16 cs.LG;physics.dis-nn;physics.stat-mech;q-bio.NC q-bio.NC https://arxiv.org/abs/2602.14885 False False 2602.15253 Scaling Laws for Masked-Reconstruction Transformers on Single-Cell Transcriptomics 2026-02-16 cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2602.15253 False False 2602.14616 Higher-Order Hit-&-Run Samplers for Linearly Constrained Densities 2026-02-16 q-bio.QM;stat.AP;stat.CO q-bio.QM https://arxiv.org/abs/2602.14616 False False 2602.14616 Higher-Order Hit-&-Run Samplers for Linearly Constrained Densities 2026-02-16 q-bio.QM;stat.AP;stat.CO q-bio.QM https://arxiv.org/abs/2602.14616 False False 2602.14328 Conformational landscapes in cryo-ET data based on MD simulations 2026-02-15 q-bio.BM;q-bio.QM q-bio.BM https://arxiv.org/abs/2602.14328 False False 2602.14005 Physical principles of building protein megacomplexes in a crowded milieu 2026-02-15 q-bio.BM q-bio.BM https://arxiv.org/abs/2602.14005 False False 2602.13630 Bistability to Quad-stability: Emergence of Hybrid Phenotypes & Enhanced Spatio-temporal Plasticity in Presence of Host-Circuit Coupling 2026-02-14 q-bio.PE q-bio.PE https://arxiv.org/abs/2602.13630 False False 2602.13887 Human-Aligned Evaluation of a Pixel-wise DNN Color Constancy Model 2026-02-14 cs.CV;q-bio.NC q-bio.NC https://arxiv.org/abs/2602.13887 False False 2602.13913 Gauge-Mediated Contagion: A Quantum Electrodynamics-Inspired Framework for Non-Local Epidemic Dynamics and Superdiffusion 2026-02-14 physics.bio-ph;physics.data-an;physics.med-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2602.13913 False False 2603.04420 Machine Learning for Complex Systems Dynamics: Detecting Bifurcations in Dynamical Systems with Deep Neural Networks 2026-02-14 cs.LG;math.DS;q-bio.NC;stat.ML q-bio.NC https://arxiv.org/abs/2603.04420 False False 2602.13913 Gauge-Mediated Contagion: A Quantum Electrodynamics-Inspired Framework for Non-Local Epidemic Dynamics and Superdiffusion 2026-02-14 physics.bio-ph;physics.data-an;physics.med-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2602.13913 False False 2602.12547 A consequence of failed sequential learning: A computational account of developmental amnesia 2026-02-13 cs.AI;cs.ET;q-bio.NC q-bio.NC https://arxiv.org/abs/2602.12547 False False 2602.12730 EMERALD-UI: An interactive web application to unveil novel protein biology hidden in the suboptimal-alignment space 2026-02-13 q-bio.QM q-bio.QM https://arxiv.org/abs/2602.12730 False False 2602.12811 Left-right asymmetry in predicting brain activity from LLMs' representations emerges with their formal linguistic competence 2026-02-13 cs.AI;cs.CL;q-bio.NC q-bio.NC https://arxiv.org/abs/2602.12811 False False 2602.12854 Hyb-Adam-UM: hybrid ultrametric-aware mtDNA phylogeny reconstruction 2026-02-13 cs.NA;math.NA;q-bio.PE q-bio.PE https://arxiv.org/abs/2602.12854 False False 2602.13121 LinkedNN: a neural model of linkage disequilibrium decay for recent effective population size inference 2026-02-13 q-bio.PE;q-bio.QM q-bio.PE https://arxiv.org/abs/2602.13121 False False 2602.13160 Structural barriers of the discrete Hasimoto map applied to protein backbone geometry 2026-02-13 math.MP;physics.SI;physics.math-ph;q-bio.BM q-bio.BM https://arxiv.org/abs/2602.13160 False False 2602.13398 Accelerated Discovery of Cryoprotectant Cocktails via Multi-Objective Bayesian Optimization 2026-02-13 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2602.13398 False False 2602.13419 Protect$^*$: Steerable Retrosynthesis through Neuro-Symbolic State Encoding 2026-02-13 cs.AI;cs.CL;cs.LG;q-bio.BM;q-bio.QM q-bio.BM https://arxiv.org/abs/2602.13419 False False 2602.13421 Metabolic cost of information processing in Poisson variational autoencoders 2026-02-13 cs.AI;q-bio.NC;stat.ML q-bio.NC https://arxiv.org/abs/2602.13421 False False 2602.13423 Spatiotemporal noise stabilizes unbounded diversity in strongly-competitive communities 2026-02-13 physics.dis-nn;physics.stat-mech;q-bio.PE q-bio.PE https://arxiv.org/abs/2602.13423 False False 2602.13503 Hermes: Large DEL Datasets Train Generalizable Protein-Ligand Binding Prediction Models 2026-02-13 q-bio.BM q-bio.BM https://arxiv.org/abs/2602.13503 False False 2602.20176 Cross-Chirality Generalization by Axial Vectors for Hetero-Chiral Protein-Peptide Interaction Design 2026-02-13 cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2602.20176 False False 2602.13368 The Influence of Width Ratios on Structural Beauty in Male Faces 2026-02-13 q-bio.NC q-bio.NC https://arxiv.org/abs/2602.13368 False False 2602.20176 Cross-Chirality Generalization by Axial Vectors for Hetero-Chiral Protein-Peptide Interaction Design 2026-02-13 cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2602.20176 False False 2602.20176 Cross-Chirality Generalization by Axial Vectors for Hetero-Chiral Protein-Peptide Interaction Design 2026-02-13 cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2602.20176 False False 2602.20176 Cross-Chirality Generalization by Axial Vectors for Hetero-Chiral Protein-Peptide Interaction Design 2026-02-13 cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2602.20176 False False 2602.20176 Cross-Chirality Generalization by Axial Vectors for Hetero-Chiral Protein-Peptide Interaction Design 2026-02-13 cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2602.20176 False False 2602.13421 Metabolic cost of information processing in Poisson variational autoencoders 2026-02-13 cs.AI;q-bio.NC;stat.ML q-bio.NC https://arxiv.org/abs/2602.13421 False False 2602.13421 Metabolic cost of information processing in Poisson variational autoencoders 2026-02-13 cs.AI;q-bio.NC;stat.ML q-bio.NC https://arxiv.org/abs/2602.13421 False False 2602.13121 LinkedNN: a neural model of linkage disequilibrium decay for recent effective population size inference 2026-02-13 q-bio.PE;q-bio.QM q-bio.PE https://arxiv.org/abs/2602.13121 False False 2602.13121 LinkedNN: a neural model of linkage disequilibrium decay for recent effective population size inference 2026-02-13 q-bio.PE;q-bio.QM q-bio.PE https://arxiv.org/abs/2602.13121 False False 2602.12811 Left-right asymmetry in predicting brain activity from LLMs' representations emerges with their formal linguistic competence 2026-02-13 cs.AI;cs.CL;q-bio.NC q-bio.NC https://arxiv.org/abs/2602.12811 False False 2602.12811 Left-right asymmetry in predicting brain activity from LLMs' representations emerges with their formal linguistic competence 2026-02-13 cs.AI;cs.CL;q-bio.NC q-bio.NC https://arxiv.org/abs/2602.12811 False False 2602.13368 The Influence of Width Ratios on Structural Beauty in Male Faces 2026-02-13 q-bio.NC q-bio.NC https://arxiv.org/abs/2602.13368 False False 2602.13368 The Influence of Width Ratios on Structural Beauty in Male Faces 2026-02-13 q-bio.NC q-bio.NC https://arxiv.org/abs/2602.13368 False False 2602.13160 Descriptive power and predictive limits of a discrete Hasimoto--DNLS model of protein backbone structure 2026-02-13 math.MP;physics.SI;physics.math-ph;q-bio.BM q-bio.BM https://arxiv.org/abs/2602.13160 False False 2602.13160 Descriptive power and predictive limits of a discrete Hasimoto--DNLS model of protein backbone structure 2026-02-13 math.MP;physics.SI;physics.math-ph;q-bio.BM q-bio.BM https://arxiv.org/abs/2602.13160 False False 2602.11478 Defining causal mechanism in dual process theory and two types of feedback control 2026-02-12 cs.SY;eess.SY;q-bio.NC q-bio.NC https://arxiv.org/abs/2602.11478 False False 2602.11540 Transition from traveling fronts to diffusion-limited growth in expanding populations 2026-02-12 physics.bio-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2602.11540 False False 2602.11601 Collaboration drives phase transitions towards cooperation in prisoner's dilemma 2026-02-12 econ.TH;physics.soc-ph;physics.stat-mech;q-bio.PE q-bio.PE https://arxiv.org/abs/2602.11601 False False 2602.11609 scPilot: Large Language Model Reasoning Toward Automated Single-Cell Analysis and Discovery 2026-02-12 cs.AI;q-bio.GN q-bio.GN https://arxiv.org/abs/2602.11609 False False 2602.11632 CL API: Real-Time Closed-Loop Interactions with Biological Neural Networks 2026-02-12 cs.ET;cs.NE;cs.SY;eess.SY;q-bio.NC q-bio.NC https://arxiv.org/abs/2602.11632 False False 2602.11813 Early stages of collective cell invasion: Biomechanics 2026-02-12 physics.bio-ph;physics.stat-mech;q-bio.CB q-bio.CB https://arxiv.org/abs/2602.11813 0.7783 0.8133 True 6 6.9 False 2602.11956 TAVAE: A VAE with Adaptable Priors Explains Contextual Modulation in the Visual Cortex 2026-02-12 cs.AI;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2602.11956 False False 2602.12026 Protein Circuit Tracing via Cross-layer Transcoders 2026-02-12 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2602.12026 False False 2602.12310 ChemRecon: a Consolidated Meta-Database Platform for Biochemical Data Integration 2026-02-12 q-bio.QM q-bio.QM https://arxiv.org/abs/2602.12310 False False 2602.12317 Free Lunch in Medical Image Foundation Model Pre-training via Randomized Synthesis and Disentanglement 2026-02-12 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2602.12317 False False 2602.13346 CellMaster: Collaborative Cell Type Annotation in Single-Cell Analysis 2026-02-12 cs.AI;cs.CV;q-bio.GN q-bio.GN https://arxiv.org/abs/2602.13346 False False 2602.11618 How Well Do Large-Scale Chemical Language Models Transfer to Downstream Tasks? 2026-02-12 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2602.11618 False False 2602.12410 Proceedings for the Inaugural Meeting of the International Society for Tractography -- IST 2025 Bordeaux 2026-02-12 cs.CV;eess.IV;q-bio.NC q-bio.NC https://arxiv.org/abs/2602.12410 False False 2603.03337 Is the brain a 1-dimensional diffeological space? 2026-02-12 q-bio.NC q-bio.NC https://arxiv.org/abs/2603.03337 False False 2602.11813 Early stages of collective cell invasion: Biomechanics 2026-02-12 physics.bio-ph;physics.stat-mech;q-bio.CB q-bio.CB https://arxiv.org/abs/2602.11813 0.7783 0.8133 True 6 6.9 False 2602.11478 Defining causal mechanism in dual process theory and two types of feedback control 2026-02-12 cs.SY;eess.SY;q-bio.NC q-bio.NC https://arxiv.org/abs/2602.11478 False False 2602.11618 How Well Do Large-Scale Chemical Language Models Transfer to Downstream Tasks? 2026-02-12 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2602.11618 False False 2602.11618 How Well Do Large-Scale Chemical Language Models Transfer to Downstream Tasks? 2026-02-12 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2602.11618 False False 2602.12026 Protein Circuit Tracing via Cross-layer Transcoders 2026-02-12 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2602.12026 False False 2603.03337 Does the motor cortex draw on a wire plane? 2026-02-12 q-bio.NC q-bio.NC https://arxiv.org/abs/2603.03337 False False 2602.11618 How Well Do Large-Scale Chemical Language Models Transfer to Downstream Tasks? 2026-02-12 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2602.11618 False False 2602.12026 Protein Circuit Tracing via Cross-layer Transcoders 2026-02-12 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2602.12026 False False 2603.03337 Does the motor cortex draw on a wire plane? 2026-02-12 q-bio.NC q-bio.NC https://arxiv.org/abs/2603.03337 False False 2602.10644 Towards Universal Spatial Transcriptomics Super-Resolution: A Generalist Physically Consistent Flow Matching Framework 2026-02-11 q-bio.BM q-bio.BM https://arxiv.org/abs/2602.10644 False False 2602.10856 Fragile $\mathit{vs}$ robust Multiple Equilibria phases in generalized Lotka-Volterra model with non-reciprocal interactions 2026-02-11 physics.dis-nn;q-bio.PE q-bio.PE https://arxiv.org/abs/2602.10856 False False 2602.11054 A Dynamical Microscope for Multivariate Oscillatory Signals: Validating Regime Recovery on Shared Manifolds 2026-02-11 physics.CD;q-bio.NC q-bio.NC https://arxiv.org/abs/2602.11054 False False 2602.11234 Learning Glioblastoma Tumor Heterogeneity Using Brain Inspired Topological Neural Networks 2026-02-11 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2602.11234 False False 2602.11338 Mathematical modeling of 1,2-propanediol utilization bacterial microcompartments in vivo activity 2026-02-11 q-bio.MN q-bio.MN https://arxiv.org/abs/2602.11338 False False 2602.11381 MEmilio -- A high performance Modular EpideMIcs simuLatIOn software for multi-scale and comparative simulations of infectious disease dynamics 2026-02-11 cs.MS;q-bio.PE q-bio.PE https://arxiv.org/abs/2602.11381 False False 2602.11427 Out-of-equilibrium selection pressure enhances inference from protein sequence data 2026-02-11 q-bio.BM q-bio.BM https://arxiv.org/abs/2602.11427 False False 2602.13325 Graph neural networks uncover structure and functions underlying the activity of simulated neural assemblies 2026-02-11 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2602.13325 False False 2602.18490 Distinguishing life from non-life via molecular frontier orbital energy gaps 2026-02-11 physics.EP;physics.chem-ph;q-bio.BM q-bio.BM https://arxiv.org/abs/2602.18490 False False 2604.02346 DrugPlayGround: Benchmarking Large Language Models and Embeddings for Drug Discovery 2026-02-11 cs.AI;cs.LG;cs.SE;q-bio.BM q-bio.BM https://arxiv.org/abs/2604.02346 False False 2602.10644 Towards Universal Spatial Transcriptomics Super-Resolution: A Generalist Physically Consistent Flow Matching Framework 2026-02-11 q-bio.BM q-bio.BM https://arxiv.org/abs/2602.10644 False False 2602.10644 Towards Universal Spatial Transcriptomics Super-Resolution: A Generalist Physically Consistent Flow Matching Framework 2026-02-11 q-bio.BM q-bio.BM https://arxiv.org/abs/2602.10644 False False 2602.11381 MEmilio -- A high performance Modular EpideMIcs simuLatIOn software for multi-scale and comparative simulations of infectious disease dynamics 2026-02-11 cs.MS;q-bio.PE q-bio.PE https://arxiv.org/abs/2602.11381 False False 2602.11381 MEmilio -- A high performance Modular EpideMIcs simuLatIOn software for multi-scale and comparative simulations of infectious disease dynamics 2026-02-11 cs.MS;q-bio.PE q-bio.PE https://arxiv.org/abs/2602.11381 False False 2602.09424 Reward-Guided Discrete Diffusion via Clean-Sample Markov Chain for Molecule and Biological Sequence Design 2026-02-10 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2602.09424 False False 2602.09491 Finite integration time can shift optimal sensitivity away from criticality 2026-02-10 physics.dis-nn;q-bio.NC q-bio.NC https://arxiv.org/abs/2602.09491 False False 2602.09852 Open diffusion MRI and connectivity data for epilepsy and surgery: The IDEAS II release 2026-02-10 q-bio.NC q-bio.NC https://arxiv.org/abs/2602.09852 False False 2602.09963 Drug Release Modeling using Physics-Informed Neural Networks 2026-02-10 cs.AI;cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2602.09963 False False 2602.09997 Popularity Feedback Constrains Innovation in Cultural Markets 2026-02-10 cs.SI;q-bio.NC;q-bio.PE q-bio.NC https://arxiv.org/abs/2602.09997 False False 2602.10156 STRAND: Sequence-Conditioned Transport for Single-Cell Perturbations 2026-02-10 cs.LG;q-bio.CB;q-bio.GN q-bio.CB https://arxiv.org/abs/2602.10156 False False 2602.10163 Beyond SMILES: Evaluating Agentic Systems for Drug Discovery 2026-02-10 cs.AI;q-bio.QM q-bio.QM https://arxiv.org/abs/2602.10163 False False 2602.09649 Population-scale Ancestral Recombination Graphs with tskit 1.0 2026-02-10 q-bio.GN;q-bio.PE q-bio.GN https://arxiv.org/abs/2602.09649 False False 2602.09793 Fully-automated sleep staging: multicenter validation of a generalizable deep neural network for Parkinson's disease and isolated REM sleep behavior disorder 2026-02-10 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2602.09793 False False 2602.10242 Whodunnit? The case of midge swarms 2026-02-10 physics.bio-ph;physics.stat-mech;q-bio.PE q-bio.PE https://arxiv.org/abs/2602.10242 False False 2602.10303 ICODEN: Ordinary Differential Equation Neural Networks for Interval-Censored Data 2026-02-10 cs.LG;q-bio.QM;stat.ML q-bio.QM https://arxiv.org/abs/2602.10303 False False 2602.10361 ENIGMA: EEG-to-Image in 15 Minutes Using Less Than 1% of the Parameters 2026-02-10 cs.AI;cs.CV;cs.HC;q-bio.NC q-bio.NC https://arxiv.org/abs/2602.10361 False False 2602.10375 Morphological instability of an invasive active-passive interface 2026-02-10 physics.soft;q-bio.TO q-bio.TO https://arxiv.org/abs/2602.10375 False False 2602.11206 UltraLIF: Fully Differentiable Spiking Neural Networks via Ultradiscretization and Max-Plus Algebra 2026-02-10 cs.AI;cs.CV;cs.LG;math.RA;q-bio.NC q-bio.NC https://arxiv.org/abs/2602.11206 False False 2602.10168 EVA: Towards a universal model of the immune system 2026-02-10 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2602.10168 False False 2602.09867 A dialog between cell adhesion and topology at the core of morphogenesis 2026-02-10 physics.soft;physics.stat-mech;q-bio.TO q-bio.TO https://arxiv.org/abs/2602.09867 0.7861 0.807 True 5 False 2602.09867 A dialog between cell adhesion and topology at the core of morphogenesis 2026-02-10 physics.soft;physics.stat-mech;q-bio.TO q-bio.TO https://arxiv.org/abs/2602.09867 0.7861 0.807 True 5 False 2602.09867 A dialog between cell adhesion and topology at the core of morphogenesis 2026-02-10 physics.soft;physics.stat-mech;q-bio.TO q-bio.TO https://arxiv.org/abs/2602.09867 0.7861 0.807 True 5 False 2602.10163 Beyond SMILES: Evaluating Agentic Systems for Drug Discovery 2026-02-10 q-bio.QM q-bio.QM https://arxiv.org/abs/2602.10163 False False 2602.09997 Popularity Feedback Constrains Innovation in Cultural Markets 2026-02-10 cs.SI;q-bio.NC;q-bio.PE q-bio.NC https://arxiv.org/abs/2602.09997 False False 2602.09997 Popularity Feedback Constrains Innovation in Cultural Markets 2026-02-10 cs.SI;q-bio.NC;q-bio.PE q-bio.NC https://arxiv.org/abs/2602.09997 False False 2602.08188 The Great Filter hypothesis -- a new Great Filter? 2026-02-09 physics.pop-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2602.08188 False False 2602.08213 DrugR: Optimizing Molecular Drugs through LLM-based Explicit Reasoning 2026-02-09 cs.AI;cs.CL;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2602.08213 False False 2602.08280 ClusterChirp: A GPU-accelerated Web Server for Natural Language-Guided Interactive Visualization and Analysis of Large Omics Data 2026-02-09 q-bio.GN q-bio.GN https://arxiv.org/abs/2602.08280 False False 2602.08580 retinalysis-vascx: An explainable software toolbox for the extraction of retinal vascular biomarkers 2026-02-09 cs.CV;q-bio.TO q-bio.TO https://arxiv.org/abs/2602.08580 False False 2602.08641 Modeling Protein Evolution via Generative Inference From Monte Carlo Chains to Population Genetics 2026-02-09 physics.dis-nn;q-bio.BM;q-bio.PE q-bio.BM https://arxiv.org/abs/2602.08641 False False 2602.08656 Ecosystems in the Anthropocene: transformative drivers 2026-02-09 q-bio.PE q-bio.PE https://arxiv.org/abs/2602.08656 False False 2602.08779 How negative feedback from filamentous actin affects cell shapes and motility 2026-02-09 q-bio.CB q-bio.CB https://arxiv.org/abs/2602.08779 False False 2602.08832 Oxi-Shapes: Tropical geometric analysis of bounded redox proteomic state spaces 2026-02-09 q-bio.QM q-bio.QM https://arxiv.org/abs/2602.08832 False False 2602.08897 A Mathematical Theory of Redox Biology 2026-02-09 q-bio.BM q-bio.BM https://arxiv.org/abs/2602.08897 False False 2602.08910 Structural coarse-graining enables noise-robust functional connectivity and reveals hidden inter-subject variability 2026-02-09 physics.dis-nn;physics.stat-mech;q-bio.NC;q-bio.PE q-bio.NC https://arxiv.org/abs/2602.08910 False False 2602.09063 scBench: Evaluating AI Agents on Single-Cell RNA-seq Analysis 2026-02-09 cs.AI;q-bio.GN q-bio.GN https://arxiv.org/abs/2602.09063 False False 2602.09248 Reply To: Global Gridded Population Datasets Systematically Underrepresent Rural Population by Josias Láng-Ritter et al 2026-02-09 cs.CY;q-bio.PE q-bio.PE https://arxiv.org/abs/2602.09248 False False 2602.08640 Universal Approximation Theorems for Dynamical Systems with Infinite-Time Horizon Guarantees 2026-02-09 math.DS;q-bio.NC q-bio.NC https://arxiv.org/abs/2602.08640 False False 2602.09067 AntigenLM: Structure-Aware DNA Language Modeling for Influenza 2026-02-09 cs.AI;cs.CE;cs.CL;q-bio.GN q-bio.GN https://arxiv.org/abs/2602.09067 False False 2602.09116 Importance inversion transfer identifies shared principles for cross-domain learning 2026-02-09 cs.LG;physics.soc-ph;q-bio.QM q-bio.QM https://arxiv.org/abs/2602.09116 False False 2602.08751 Central Dogma Transformer II: An AI Microscope for Understanding Cellular Regulatory Mechanisms 2026-02-09 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2602.08751 False False 2602.08840 Daring few, patient many: division of labor in decentralized foraging collectives 2026-02-09 q-bio.PE q-bio.PE https://arxiv.org/abs/2602.08840 False False 2602.08275 Linguistics and Human Brain: A Perspective of Computational Neuroscience 2026-02-09 cs.CL;q-bio.NC q-bio.NC https://arxiv.org/abs/2602.08275 False False 2602.18472 Physiologically Informed Deep Learning: A Multi-Scale Framework for Next-Generation PBPK Modeling 2026-02-09 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2602.18472 0.7997 0.8108 True 6 7.2 False 2602.18476 BioLM-Score: Language-Prior Conditioned Probabilistic Geometric Potentials for Protein-Ligand Scoring 2026-02-09 cs.AI;cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2602.18476 False False 2603.03312 Escaping the BLEU Trap: A Signal-Grounded Framework with Decoupled Semantic Guidance for EEG-to-Text Decoding 2026-02-09 cs.AI;cs.CL;cs.HC;eess.AS;q-bio.NC q-bio.NC https://arxiv.org/abs/2603.03312 False False 2602.10152 Validating Interpretability in siRNA Efficacy Prediction: A Perturbation-Based, Dataset-Aware Protocol 2026-02-09 cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2602.10152 False False 2602.08751 Central Dogma Transformer II: An AI Microscope for Understanding Cellular Regulatory Mechanisms 2026-02-09 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2602.08751 False False 2603.03312 Escaping the BLEU Trap: A Signal-Grounded Framework with Decoupled Semantic Guidance for EEG-to-Text Decoding 2026-02-09 cs.AI;cs.CL;cs.HC;eess.AS;q-bio.NC q-bio.NC https://arxiv.org/abs/2603.03312 False False 2602.08280 ClusterChirp: Scalable Interactive Exploration of Omics Data with Natural Language-Guided Analysis 2026-02-09 q-bio.GN q-bio.GN https://arxiv.org/abs/2602.08280 False False 2602.08580 retinalysis-vascx: An explainable software toolbox for the extraction of retinal vascular biomarkers 2026-02-09 cs.CV;q-bio.TO q-bio.TO https://arxiv.org/abs/2602.08580 False False 2602.08580 retinalysis-vascx: An explainable software toolbox for the extraction of retinal vascular biomarkers 2026-02-09 cs.CV;q-bio.TO q-bio.TO https://arxiv.org/abs/2602.08580 False False 2603.03312 Escaping the BLEU Trap: A Signal-Grounded Framework with Decoupled Semantic Guidance for EEG-to-Text Decoding 2026-02-09 cs.AI;cs.CL;cs.HC;eess.AS;q-bio.NC q-bio.NC https://arxiv.org/abs/2603.03312 False False 2602.08580 retinalysis-vascx: An explainable software toolbox for the extraction of retinal vascular biomarkers 2026-02-09 cs.CV;q-bio.TO q-bio.TO https://arxiv.org/abs/2602.08580 False False 2603.03312 Escaping the BLEU Trap: A Signal-Grounded Framework with Decoupled Semantic Guidance for EEG-to-Text Decoding 2026-02-09 cs.AI;cs.CL;cs.HC;eess.AS;q-bio.NC q-bio.NC https://arxiv.org/abs/2603.03312 False False 2602.08580 retinalysis-vascx: An explainable software toolbox for the extraction of retinal vascular biomarkers 2026-02-09 cs.CV;q-bio.TO q-bio.TO https://arxiv.org/abs/2602.08580 False False 2602.08275 Linguistics and Human Brain: A Perspective of Computational Neuroscience 2026-02-09 cs.CL;q-bio.NC q-bio.NC https://arxiv.org/abs/2602.08275 False False 2602.08275 Linguistics and Human Brain: A Perspective of Computational Neuroscience 2026-02-09 cs.CL;q-bio.NC q-bio.NC https://arxiv.org/abs/2602.08275 False False 2602.08640 Universal Approximation Theorems for Dynamical Systems with Infinite-Time Horizon Guarantees 2026-02-09 math.DS;q-bio.NC q-bio.NC https://arxiv.org/abs/2602.08640 False False 2602.08640 Universal Approximation Theorems for Dynamical Systems with Infinite-Time Horizon Guarantees 2026-02-09 math.DS;q-bio.NC q-bio.NC https://arxiv.org/abs/2602.08640 False False 2602.07735 TerraBind: Fast and Accurate Binding Affinity Prediction through Coarse Structural Representations 2026-02-08 cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2602.07735 False False 2602.07805 MetaHQ: Harmonized, high-quality metadata annotations of public omics samples and studies 2026-02-08 q-bio.GN q-bio.GN https://arxiv.org/abs/2602.07805 False False 2602.08008 Randomness-aware multiscale models of glioma invasion and treatment 2026-02-08 q-bio.CB q-bio.CB https://arxiv.org/abs/2602.08008 False False 2602.08079 Bootstrapping Life-Inspired Machine Intelligence: The Biological Route from Chemistry to Cognition and Creativity 2026-02-08 q-bio.NC q-bio.NC https://arxiv.org/abs/2602.08079 False False 2602.08101 From Stochastic Shocks to Macroscopic Tails: The Moyal Distribution as a Unified Framework for Epidemic Dynamics 2026-02-08 q-bio.PE q-bio.PE https://arxiv.org/abs/2602.08101 False False 2602.07816 Beyond Expertise: Stable Individual Differences in Predictive Eye-Hand Coordination 2026-02-08 cs.HC;q-bio.NC q-bio.NC https://arxiv.org/abs/2602.07816 False False 2602.07877 Effects of Stochastic Games on Evolutionary Dynamics in Structured Populations 2026-02-08 physics.soc-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2602.07877 False False 2602.07805 MetaHQ: Harmonized, high-quality metadata annotations of public omics samples and studies 2026-02-08 q-bio.GN q-bio.GN https://arxiv.org/abs/2602.07805 False False 2602.07877 Effects of Stochastic Games on Evolutionary Dynamics in Structured Populations 2026-02-08 physics.soc-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2602.07877 False False 2602.07816 Beyond Expertise: Stable Individual Differences in Predictive Eye-Hand Coordination 2026-02-08 cs.HC;q-bio.NC q-bio.NC https://arxiv.org/abs/2602.07816 False False 2602.07816 Beyond Expertise: Stable Individual Differences in Predictive Eye-Hand Coordination 2026-02-08 cs.HC;q-bio.NC q-bio.NC https://arxiv.org/abs/2602.07816 False False 2602.08079 Bootstrapping Life-Inspired Machine Intelligence: The Biological Route from Chemistry to Cognition and Creativity 2026-02-08 q-bio.NC q-bio.NC https://arxiv.org/abs/2602.08079 False False 2602.08079 Bootstrapping Life-Inspired Machine Intelligence: The Biological Route from Chemistry to Cognition and Creativity 2026-02-08 q-bio.NC q-bio.NC https://arxiv.org/abs/2602.08079 False False 2602.07426 Maximally probable tree topologies with $r$-furcation 2026-02-07 math.CO;q-bio.PE q-bio.PE https://arxiv.org/abs/2602.07426 False False 2602.07475 Bipartite Graph Attention-based Clustering for Large-scale scRNA-seq Data 2026-02-07 cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2602.07475 False False 2602.07539 Training-Driven Representational Geometry Modularization Predicts Brain Alignment in Language Models 2026-02-07 cs.CL;q-bio.NC q-bio.NC https://arxiv.org/abs/2602.07539 False False 2602.07547 Linguistic properties and model scale in brain encoding: from small to compressed language models 2026-02-07 cs.AI;cs.CL;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2602.07547 False False 2602.07570 How does longer temporal context enhance multimodal narrative video processing in the brain? 2026-02-07 cs.AI;cs.CV;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2602.07570 False False 2602.07648 Alteration of the Brains Microbiome and Neuroinflammation Associated with Ventricular Catheters 2026-02-07 q-bio.GN q-bio.GN https://arxiv.org/abs/2602.07648 False False 2602.07709 Generative structural elucidation from mass spectra as an iterative optimization problem 2026-02-07 cs.NE;q-bio.QM q-bio.QM https://arxiv.org/abs/2602.07709 False False 2602.07553 Punishment in bipartite societies 2026-02-07 cs.GT;q-bio.PE q-bio.PE https://arxiv.org/abs/2602.07553 False False 2602.07570 How does longer temporal context enhance multimodal narrative video processing in the brain? 2026-02-07 cs.AI;cs.CV;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2602.07570 False False 2602.07570 How does longer temporal context enhance multimodal narrative video processing in the brain? 2026-02-07 cs.AI;cs.CV;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2602.07570 False False 2602.07539 Training-Driven Representational Geometry Modularization Predicts Brain Alignment in Language Models 2026-02-07 cs.CL;q-bio.NC q-bio.NC https://arxiv.org/abs/2602.07539 False False 2602.07539 Training-Driven Representational Geometry Modularization Predicts Brain Alignment in Language Models 2026-02-07 cs.CL;q-bio.NC q-bio.NC https://arxiv.org/abs/2602.07539 False False 2602.06282 An Interpretable Vision Transformer as a Fingerprint-Based Diagnostic Aid for Kabuki and Wiedemann-Steiner Syndromes 2026-02-06 cs.CV;q-bio.QM q-bio.QM https://arxiv.org/abs/2602.06282 False False 2602.06296 Internalized Morphogenesis: A Self-Organizing Model for Growth, Replication, and Regeneration via Local Token Exchange in Modular Systems 2026-02-06 cs.RO;q-bio.QM q-bio.QM https://arxiv.org/abs/2602.06296 False False 2602.06394 Unlocking Noisy Real-World Corpora for Foundation Model Pre-Training via Quality-Aware Tokenization 2026-02-06 cs.AI;cs.CE;q-bio.GN;q-fin.CP q-bio.GN https://arxiv.org/abs/2602.06394 False False 2602.06418 Adaptive Protein Tokenization 2026-02-06 cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2602.06418 False False 2602.06606 Multiple timescales in collective motion: daily and intraday upstream fish migration focusing on Feller condition 2026-02-06 math.DS;q-bio.PE q-bio.PE https://arxiv.org/abs/2602.06606 False False 2602.06640 Habitat heterogeneity and dispersal network structure as drivers of metacommunity dynamics 2026-02-06 physics.stat-mech;q-bio.PE q-bio.PE https://arxiv.org/abs/2602.06640 False False 2602.06649 Growth Models Under Uniform Catastrophes 2026-02-06 math.PR;q-bio.PE q-bio.PE https://arxiv.org/abs/2602.06649 False False 2602.07084 AbFlow : End-to-end Paratope-Centric Antibody Design by Interaction Enhanced Flow Matching 2026-02-06 cs.AI;cs.CE;q-bio.QM q-bio.QM https://arxiv.org/abs/2602.07084 False False 2602.07103 scDFM: Distributional Flow Matching Model for Robust Single-Cell Perturbation Prediction 2026-02-06 cs.AI;q-bio.QM q-bio.QM https://arxiv.org/abs/2602.07103 False False 2602.07131 Behavior Score Prediction in Resting-State Functional MRI by Deep State Space Modeling 2026-02-06 eess.SP;q-bio.NC q-bio.NC https://arxiv.org/abs/2602.07131 False False 2602.07134 Deterministic and stochastic infection dynamics in a population subject to stress 2026-02-06 math.DS;q-bio.PE q-bio.PE https://arxiv.org/abs/2602.07134 False False 2602.07231 Impulsive Release Strategies for Wolbachia-Infected Mosquitoes under Temperature-Induced Infection Loss 2026-02-06 q-bio.PE q-bio.PE https://arxiv.org/abs/2602.07231 False False 2602.07233 Extracting Root-Causal Brain Activity Driving Psychopathology from Resting State fMRI 2026-02-06 cs.CV;cs.LG;eess.IV;q-bio.NC q-bio.NC https://arxiv.org/abs/2602.07233 False False 2602.07257 A Modular Mechanistic In Silico Model for In Vitro Transcription Process Yield and Product Quality Prediction 2026-02-06 q-bio.MN q-bio.MN https://arxiv.org/abs/2602.07257 False False 2602.07261 Cognitive algorithms and systems of episodic memory, semantic memory and their learnings 2026-02-06 cs.AI;cs.ET;q-bio.NC q-bio.NC https://arxiv.org/abs/2602.07261 False False 2603.02213 A Zipf-preserving, long-range correlated surrogate for written language and other symbolic sequences 2026-02-06 cs.CL;physics.stat-mech;q-bio.GN q-bio.GN https://arxiv.org/abs/2603.02213 False False 2602.07131 Behavior Score Prediction in Resting-State Functional MRI by Deep State Space Modeling 2026-02-06 eess.SP;q-bio.NC q-bio.NC https://arxiv.org/abs/2602.07131 False False 2602.07131 Behavior Score Prediction in Resting-State Functional MRI by Deep State Space Modeling 2026-02-06 eess.SP;q-bio.NC q-bio.NC https://arxiv.org/abs/2602.07131 False False 2602.06606 Multiple timescales in collective motion: daily and intraday upstream fish migration focusing on Feller condition 2026-02-06 math.DS;q-bio.PE q-bio.PE https://arxiv.org/abs/2602.06606 False False 2602.06606 Multiple timescales in collective motion: daily and intraday upstream fish migration focusing on Feller condition 2026-02-06 math.DS;q-bio.PE q-bio.PE https://arxiv.org/abs/2602.06606 False False 2602.06640 Habitat heterogeneity and dispersal network structure as drivers of metacommunity dynamics 2026-02-06 physics.stat-mech;q-bio.PE q-bio.PE https://arxiv.org/abs/2602.06640 False False 2602.06640 Habitat heterogeneity and dispersal network structure as drivers of metacommunity dynamics 2026-02-06 physics.stat-mech;q-bio.PE q-bio.PE https://arxiv.org/abs/2602.06640 False False 2602.06282 An Interpretable Vision Transformer as a Fingerprint-Based Diagnostic Aid for Kabuki and Wiedemann-Steiner Syndromes 2026-02-06 cs.CV;q-bio.QM q-bio.QM https://arxiv.org/abs/2602.06282 False False 2602.06606 Multiple timescales in collective motion: daily and intraday upstream fish migration focusing on Feller condition 2026-02-06 math.DS;q-bio.PE q-bio.PE https://arxiv.org/abs/2602.06606 False False 2602.06282 An Interpretable Vision Transformer as a Fingerprint-Based Diagnostic Aid for Kabuki and Wiedemann-Steiner Syndromes 2026-02-06 cs.CV;q-bio.QM q-bio.QM https://arxiv.org/abs/2602.06282 False False 2602.06606 Multiple timescales in collective motion: daily and intraday upstream fish migration focusing on Feller condition 2026-02-06 math.DS;q-bio.PE q-bio.PE https://arxiv.org/abs/2602.06606 False False 2602.07134 Deterministic and stochastic infection dynamics in a population subject to stress 2026-02-06 math.DS;q-bio.PE q-bio.PE https://arxiv.org/abs/2602.07134 False False 2602.07134 Deterministic and stochastic infection dynamics in a population subject to stress 2026-02-06 math.DS;q-bio.PE q-bio.PE https://arxiv.org/abs/2602.07134 False False 2602.05196 Learning virulence-transmission relationships using causal inference 2026-02-05 q-bio.PE;q-bio.QM q-bio.PE https://arxiv.org/abs/2602.05196 False False 2602.05274 Specieslike clusters based on identical ancestor points 2026-02-05 q-bio.PE q-bio.PE https://arxiv.org/abs/2602.05274 False False 2602.05583 Intermittent precipitation and spatial Allee effects drive irregular vegetation patterns in semiarid ecosystems 2026-02-05 physics.AO;q-bio.PE q-bio.PE https://arxiv.org/abs/2602.05583 False False 2602.05971 Characterizing Human Semantic Navigation in Concept Production as Trajectories in Embedding Space 2026-02-05 cs.CL;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2602.05971 False False 2602.06106 To clean or not to clean: The free-rider problem in sequentially shared resources 2026-02-05 physics.soc-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2602.06106 False False 2602.06200 Threshold Resource Redistribution in Spatially-Structured Kinship Networks 2026-02-05 physics.AO;physics.soc-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2602.06200 False False 2602.06020 Mechanisms of AI Protein Folding in ESMFold 2026-02-05 cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2602.06020 False False 2602.05451 CPTCs Drive Somatic-Visceral Communication via the Wnt Axis in Somatic Mechanotherapy: A Single-Cell Deep Learning Study 2026-02-05 q-bio.BM q-bio.BM https://arxiv.org/abs/2602.05451 False False 2602.05971 Characterizing Human Semantic Navigation in Concept Production as Trajectories in Embedding Space 2026-02-05 cs.CL;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2602.05971 False False 2602.05971 Characterizing Human Semantic Navigation in Concept Production as Trajectories in Embedding Space 2026-02-05 cs.CL;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2602.05971 False False 2602.06020 Two Stages of Folding: Convergent Mechanisms in AI Protein Folding Trunks 2026-02-05 cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2602.06020 False False 2602.06020 Two Stages of Folding: Convergent Mechanisms in AI Protein Folding Trunks 2026-02-05 cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2602.06020 False False 2602.04095 A computational account of dreaming: learning and memory consolidation 2026-02-04 cs.AI;cs.ET;q-bio.NC q-bio.NC https://arxiv.org/abs/2602.04095 False False 2602.04119 Synthesizable Molecular Generation via Soft-constrained GFlowNets with Rich Chemical Priors 2026-02-04 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2602.04119 False False 2602.04150 A brief review of evolutionary game dynamics in the reinforcement learning paradigm 2026-02-04 physics.AO;physics.dis-nn;q-bio.PE q-bio.PE https://arxiv.org/abs/2602.04150 False False 2602.04270 Multi-Integration of Labels across Categories for Component Identification (MILCCI) 2026-02-04 cs.LG;q-bio.NC;q-bio.QM;stat.ML q-bio.NC https://arxiv.org/abs/2602.04270 False False 2602.04437 How seed banks evolve in plants: a stochastic dynamical system subject to a strong drift 2026-02-04 math.DS;math.PR;q-bio.PE q-bio.PE https://arxiv.org/abs/2602.04437 False False 2602.04481 The impact of heterogeneity on the co-evolution of cooperation and epidemic spreading in complex networks 2026-02-04 cs.GT;physics.soc-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2602.04481 False False 2602.04492 Discovering Mechanistic Models of Neural Activity: System Identification in an in Silico Zebrafish 2026-02-04 cs.AI;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2602.04492 False False 2602.04512 BrainVista: Modeling Naturalistic Brain Dynamics as Multimodal Next-Token Prediction 2026-02-04 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2602.04512 False False 2602.04762 Uncertainty in Island-based Ecosystem Services and Climate Change 2026-02-04 q-bio.PE;stat.AP;stat.OT q-bio.PE https://arxiv.org/abs/2602.04762 False False 2602.04883 Protein Autoregressive Modeling via Multiscale Structure Generation 2026-02-04 cs.AI;cs.LG;q-bio.BM;q-bio.QM q-bio.BM https://arxiv.org/abs/2602.04883 False False 2602.05017 A novel scalable high performance diffusion solver for multiscale cell simulations 2026-02-04 cs.DC;q-bio.CB q-bio.CB https://arxiv.org/abs/2602.05017 False False 2602.05071 Optimal Harvesting in Stream Networks: Maximizing Biomass and Yield 2026-02-04 math.DS;q-bio.PE q-bio.PE https://arxiv.org/abs/2602.05071 False False 2602.05118 Combination therapy for colorectal cancer with anti-PD-L1 and cancer vaccine: A multiscale mathematical model of tumor-immune interactions 2026-02-04 q-bio.PE q-bio.PE https://arxiv.org/abs/2602.05118 False False 2602.04916 AFD-INSTRUCTION: A Comprehensive Antibody Instruction Dataset with Functional Annotations for LLM-Based Understanding and Design 2026-02-04 cs.CL;q-bio.QM q-bio.QM https://arxiv.org/abs/2602.04916 False False 2602.23382 Audited calibration under regime shift as a computational test of support-structured broadcast 2026-02-04 q-bio.NC q-bio.NC https://arxiv.org/abs/2602.23382 False False 2602.04883 Protein Autoregressive Modeling via Multiscale Structure Generation 2026-02-04 cs.AI;cs.LG;q-bio.BM;q-bio.QM q-bio.BM https://arxiv.org/abs/2602.04883 False False 2602.04883 Protein Autoregressive Modeling via Multiscale Structure Generation 2026-02-04 cs.AI;cs.LG;q-bio.BM;q-bio.QM q-bio.BM https://arxiv.org/abs/2602.04883 False False 2602.04150 A brief review of evolutionary game dynamics in the reinforcement learning paradigm 2026-02-04 physics.AO;physics.dis-nn;q-bio.PE q-bio.PE https://arxiv.org/abs/2602.04150 False False 2602.04916 AFD-INSTRUCTION: A Comprehensive Antibody Instruction Dataset with Functional Annotations for LLM-Based Understanding and Design 2026-02-04 cs.CL;q-bio.QM q-bio.QM https://arxiv.org/abs/2602.04916 False False 2602.04150 A brief review of evolutionary game dynamics in the reinforcement learning paradigm 2026-02-04 physics.AO;physics.dis-nn;q-bio.PE q-bio.PE https://arxiv.org/abs/2602.04150 False False 2602.04916 AFD-INSTRUCTION: A Comprehensive Antibody Instruction Dataset with Functional Annotations for LLM-Based Understanding and Design 2026-02-04 cs.CL;q-bio.QM q-bio.QM https://arxiv.org/abs/2602.04916 False False 2602.04119 Synthesizable Molecular Generation via Soft-constrained GFlowNets with Rich Chemical Priors 2026-02-04 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2602.04119 False False 2602.03172 Adversarial construction as a potential solution to the experiment design problem in large task spaces 2026-02-03 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2602.03172 False False 2602.03240 Estimating measures of information processing during cognitive tasks using functional magnetic resonance imaging 2026-02-03 cs.IT;math.IT;q-bio.NC q-bio.NC https://arxiv.org/abs/2602.03240 False False 2602.03269 Systematic review of self-supervised foundation models for brain network representation using electroencephalography 2026-02-03 q-bio.NC q-bio.NC https://arxiv.org/abs/2602.03269 False False 2602.03343 MARADONER: Motif Activity Response Analysis Done Right 2026-02-03 q-bio.GN;q-bio.QM;stat.CO q-bio.GN https://arxiv.org/abs/2602.03343 False False 2602.03477 ScDiVa: Masked Discrete Diffusion for Joint Modeling of Single-Cell Identity and Expression 2026-02-03 cs.AI;cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2602.03477 False False 2602.03490 A Minimal Task Reveals Emergent Path Integration and Object-Location Binding in a Predictive Sequence Model 2026-02-03 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2602.03490 False False 2602.03766 FOVI: A biologically-inspired foveated interface for deep vision models 2026-02-03 cs.CV;cs.NE;q-bio.NC q-bio.NC https://arxiv.org/abs/2602.03766 False False 2602.03779 Generative AI for Enzyme Design and Biocatalysis 2026-02-03 q-bio.BM q-bio.BM https://arxiv.org/abs/2602.03779 False False 2602.03896 A Hitchhiker's Guide to Poisson Gradient Estimation 2026-02-03 cs.LG;q-bio.NC;stat.ML q-bio.NC https://arxiv.org/abs/2602.03896 False False 2602.03902 All-Atom GPCR-Ligand Simulation via Residual Isometric Latent Flow 2026-02-03 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2602.03902 False False 2602.04008 Mathematical simulations of pediatric hemodynamics in isolated ventricular septal defect 2026-02-03 q-bio.TO q-bio.TO https://arxiv.org/abs/2602.04008 False False 2602.04021 Group Contrastive Learning for Weakly Paired Multimodal Data 2026-02-03 cs.LG;q-bio.QM;stat.ML q-bio.QM https://arxiv.org/abs/2602.04021 False False 2602.04058 RareCollab -- An Agentic System Diagnosing Mendelian Disorders with Integrated Phenotypic and Molecular Evidence 2026-02-03 q-bio.GN q-bio.GN https://arxiv.org/abs/2602.04058 False False 2602.04901 Beyond Independent Genes: Learning Module-Inductive Representations for Gene Perturbation Prediction 2026-02-03 cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2602.04901 False False 2602.03886 Prenatal Stress Detection from Electrocardiography Using Self-Supervised Deep Learning: Development and External Validation 2026-02-03 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2602.03886 False False 2602.03824 Deep-learning-based pan-phenomic data reveals the explosive evolution of avian visual disparity 2026-02-03 cs.CV;q-bio.PE;q-bio.QM q-bio.PE https://arxiv.org/abs/2602.03824 False False 2602.03228 Asymptotic Behavior of Integral Projection Models via Genealogical Quantities 2026-02-03 q-bio.PE q-bio.PE https://arxiv.org/abs/2602.03228 False False 2602.03998 AtlasPatch: Efficient Tissue Detection and High-throughput Patch Extraction for Computational Pathology at Scale 2026-02-03 cs.CV;eess.IV;q-bio.QM q-bio.QM https://arxiv.org/abs/2602.03998 False False 2602.03228 Asymptotic Behavior of Integral Projection Models via Genealogical Quantities 2026-02-03 q-bio.PE q-bio.PE https://arxiv.org/abs/2602.03228 False False 2602.03886 Prenatal Stress Detection from Electrocardiography Using Self-Supervised Deep Learning: Development and External Validation 2026-02-03 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2602.03886 False False 2602.04058 RareCollab: an LLM-powered framework for multimodal reasoning in Mendelian disease diagnosis 2026-02-03 q-bio.GN q-bio.GN https://arxiv.org/abs/2602.04058 False False 2602.03228 Asymptotic Behavior of Integral Projection Models via Genealogical Quantities 2026-02-03 q-bio.PE q-bio.PE https://arxiv.org/abs/2602.03228 False False 2602.03886 Prenatal Stress Detection from Electrocardiography Using Self-Supervised Deep Learning: Development and External Validation 2026-02-03 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2602.03886 False False 2602.04058 RareCollab: an LLM-powered framework for multimodal reasoning in Mendelian disease diagnosis 2026-02-03 q-bio.GN q-bio.GN https://arxiv.org/abs/2602.04058 False False 2602.03490 Path Integration and Object-Location Binding Emerge in an Action-Conditioned Predictive Sequence Network 2026-02-03 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2602.03490 False False 2602.03490 Path Integration and Object-Location Binding Emerge in an Action-Conditioned Predictive Sequence Network 2026-02-03 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2602.03490 False False 2602.03896 A hitchhiker's guide to Poisson gradient estimation 2026-02-03 cs.LG;q-bio.NC;stat.ML q-bio.NC https://arxiv.org/abs/2602.03896 False False 2602.03896 A hitchhiker's guide to Poisson gradient estimation 2026-02-03 cs.LG;q-bio.NC;stat.ML q-bio.NC https://arxiv.org/abs/2602.03896 False False 2602.03766 FOVI: A biologically-inspired foveated interface for deep vision models 2026-02-03 cs.CV;cs.NE;q-bio.NC q-bio.NC https://arxiv.org/abs/2602.03766 False False 2602.03766 FOVI: A biologically-inspired foveated interface for deep vision models 2026-02-03 cs.CV;cs.NE;q-bio.NC q-bio.NC https://arxiv.org/abs/2602.03766 False False 2602.04901 Beyond Independent Genes: Learning Module-Inductive Representations for Single-Cell Gene Perturbation Prediction 2026-02-03 cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2602.04901 False False 2602.04901 Beyond Independent Genes: Learning Module-Inductive Representations for Single-Cell Gene Perturbation Prediction 2026-02-03 cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2602.04901 False False 2602.03228 Genealogical Expansions of Positive Fredholm Operators via a Reference-Point Method 2026-02-03 q-bio.PE q-bio.PE https://arxiv.org/abs/2602.03228 False False 2602.03228 Genealogical Expansions of Positive Fredholm Operators via a Reference-Point Method 2026-02-03 q-bio.PE q-bio.PE https://arxiv.org/abs/2602.03228 False False 2602.03228 Genealogical Expansions of Positive Fredholm Operators via a Reference-Point Method 2026-02-03 q-bio.PE q-bio.PE https://arxiv.org/abs/2602.03228 False False 2602.03228 Genealogical Expansions of Positive Fredholm Operators via a Reference-Point Method 2026-02-03 q-bio.PE q-bio.PE https://arxiv.org/abs/2602.03228 False False 2602.03824 Quantifying Avian Morphological Evolution through Deep Representation Learning 2026-02-03 cs.CV;q-bio.PE;q-bio.QM q-bio.PE https://arxiv.org/abs/2602.03824 False False 2602.03824 Quantifying Avian Morphological Evolution through Deep Representation Learning 2026-02-03 cs.CV;q-bio.PE;q-bio.QM q-bio.PE https://arxiv.org/abs/2602.03824 False False 2602.03228 Genealogical Expansions of Positive Fredholm Operators via a Reference-Point Method 2026-02-03 q-bio.PE q-bio.PE https://arxiv.org/abs/2602.03228 False False 2602.03228 Genealogical Expansions of Positive Fredholm Operators via a Reference-Point Method 2026-02-03 q-bio.PE q-bio.PE https://arxiv.org/abs/2602.03228 False False 2602.02916 Mathematical Modeling of Lesion Pattern Formation in Dendritic Keratitis 2026-02-02 q-bio.TO q-bio.TO https://arxiv.org/abs/2602.02916 False False 2602.01492 From Discrete to Continuous Mixed Populations of Conformists, Nonconformists, and Imitators 2026-02-02 cs.SY;eess.SY;q-bio.PE q-bio.PE https://arxiv.org/abs/2602.01492 False False 2602.01496 Is Normalized Biomass Really Abundance? Pitfalls, Artifacts, and Misconceptions in the Field of Size Spectra Analysis -- A Case for Back-Transformed Spectra 2026-02-02 q-bio.QM q-bio.QM https://arxiv.org/abs/2602.01496 False False 2602.01604 Thermodynamic cost-controllability tradeoff in metabolic currency coupling 2026-02-02 physics.bio-ph;q-bio.SC q-bio.SC https://arxiv.org/abs/2602.01604 False False 2602.01772 DIA-CLIP: a universal representation learning framework for zero-shot DIA proteomics 2026-02-02 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2602.01772 False False 2602.01839 DOGMA: Weaving Structural Information into Data-centric Single-cell Transcriptomics Analysis 2026-02-02 cs.AI;cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2602.01839 False False 2602.01845 No Generation without Representation: Efficient Causal Protein Language Models Enable Zero-Shot Fitness Estimation 2026-02-02 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2602.01845 False False 2602.02374 Recurrent neural chemical reaction networks trained to switch dynamical behaviours through learned bifurcations 2026-02-02 math.DS;q-bio.MN q-bio.MN https://arxiv.org/abs/2602.02374 False False 2602.02425 Repurposing Protein Language Models for Latent Flow-Based Fitness Optimization 2026-02-02 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2602.02425 False False 2602.02494 MEG-XL: Data-Efficient Brain-to-Text via Long-Context Pre-Training 2026-02-02 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2602.02494 False False 2602.02605 Fine-Tuning Language Models to Know What They Know 2026-02-02 cs.AI;cs.CL;cs.NE;q-bio.NC q-bio.NC https://arxiv.org/abs/2602.02605 False False 2602.02638 hSNMF: Hybrid Spatially Regularized NMF for Image-Derived Spatial Transcriptomics 2026-02-02 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2602.02638 False False 2602.02825 On the consistent and scalable detection of spatial patterns 2026-02-02 q-bio.QM;stat.AP;stat.ME q-bio.QM https://arxiv.org/abs/2602.02825 False False 2602.02918 A Multi-scale Linear-time Encoder for Whole-Slide Image Analysis 2026-02-02 cs.AI;cs.CV;cs.LG;q-bio.TO q-bio.TO https://arxiv.org/abs/2602.02918 False False 2602.02920 A Reproducible Framework for Bias-Resistant Machine Learning on Small-Sample Neuroimaging Data 2026-02-02 cs.CV;cs.LG;q-bio.NC;q-bio.QM q-bio.NC https://arxiv.org/abs/2602.02920 False False 2602.01751 MGKAN: Predicting Asymmetric Drug-Drug Interactions via a Multimodal Graph Kolmogorov-Arnold Network 2026-02-02 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2602.01751 False False 2602.02320 A Large-Scale Dataset for Molecular Structure-Language Description via a Rule-Regularized Method 2026-02-02 cs.AI;cs.CL;q-bio.BM q-bio.BM https://arxiv.org/abs/2602.02320 False False 2602.02128 Scalable Spatio-Temporal SE(3) Diffusion for Long-Horizon Protein Dynamics 2026-02-02 cs.AI;cs.LG;physics.bio-ph;q-bio.BM;q-bio.QM q-bio.BM https://arxiv.org/abs/2602.02128 False False 2602.13249 Boltz is a Strong Baseline for Atom-level Representation Learning 2026-02-02 cs.AI;cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2602.13249 False False 2602.02620 CryoLVM: Self-supervised Learning from Cryo-EM Density Maps with Large Vision Models 2026-02-02 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2602.02620 False False 2602.02916 Mathematical Modeling of Lesion Pattern Formation in Dendritic Keratitis 2026-02-02 q-bio.TO q-bio.TO https://arxiv.org/abs/2602.02916 False False 2602.01496 Is normalized biomass really abundance? pitfalls, artifacts, and misconceptions in the field of size spectra analysis: a case for back-transformed spectra and standardized binning 2026-02-02 q-bio.QM q-bio.QM https://arxiv.org/abs/2602.01496 False False 2602.01839 DOGMA: Weaving Structural Information into Data-centric Single-cell Transcriptomics Analysis 2026-02-02 cs.AI;cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2602.01839 False False 2602.01839 DOGMA: Weaving Structural Information into Data-centric Single-cell Transcriptomics Analysis 2026-02-02 cs.AI;cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2602.01839 False False 2602.02320 A Large-Scale Dataset for Molecular Structure-Language Description via a Rule-Regularized Method 2026-02-02 cs.AI;cs.CL;q-bio.BM q-bio.BM https://arxiv.org/abs/2602.02320 False False 2602.02320 A Large-Scale Dataset for Molecular Structure-Language Description via a Rule-Regularized Method 2026-02-02 cs.AI;cs.CL;q-bio.BM q-bio.BM https://arxiv.org/abs/2602.02320 False False 2602.02494 MEG-XL: Data-Efficient Brain-to-Text via Long-Context Pre-Training 2026-02-02 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2602.02494 False False 2602.02494 MEG-XL: Data-Efficient Brain-to-Text via Long-Context Pre-Training 2026-02-02 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2602.02494 False False 2602.01604 Thermodynamic cost-controllability tradeoff in metabolic currency coupling 2026-02-02 physics.bio-ph;q-bio.SC q-bio.SC https://arxiv.org/abs/2602.01604 False False 2602.01604 Thermodynamic cost-controllability tradeoff in metabolic currency coupling 2026-02-02 physics.bio-ph;q-bio.SC q-bio.SC https://arxiv.org/abs/2602.01604 False False 2602.13249 A Systematic Evaluation of Co-folding Model Representations for Small-Molecule Learning 2026-02-02 cs.AI;cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2602.13249 False False 2602.13249 A Systematic Evaluation of Co-folding Model Representations for Small-Molecule Learning 2026-02-02 cs.AI;cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2602.13249 False False 2602.02605 Fine-Tuning Language Models to Know What They Know 2026-02-02 cs.AI;cs.CL;cs.NE;q-bio.NC q-bio.NC https://arxiv.org/abs/2602.02605 False False 2602.02605 Fine-Tuning Language Models to Know What They Know 2026-02-02 cs.AI;cs.CL;cs.NE;q-bio.NC q-bio.NC https://arxiv.org/abs/2602.02605 False False 2602.02320 A Large-Scale Dataset for Molecular Structure-Language Description via a Rule-Regularized Method 2026-02-02 cs.AI;cs.CL;q-bio.BM q-bio.BM https://arxiv.org/abs/2602.02320 False False 2602.02320 A Large-Scale Dataset for Molecular Structure-Language Description via a Rule-Regularized Method 2026-02-02 cs.AI;cs.CL;q-bio.BM q-bio.BM https://arxiv.org/abs/2602.02320 False False 2602.00978 Organismal Agency and Rapid Adaptation: The Phenopoiesis Algorithm for Phenotype-First Evolution 2026-02-01 cs.NE;q-bio.PE q-bio.PE https://arxiv.org/abs/2602.00978 False False 2602.01019 Inter- and Intra-Subject Variability in EEG: A Systematic Survey 2026-02-01 cs.AI;cs.HC;q-bio.NC q-bio.NC https://arxiv.org/abs/2602.01019 False False 2602.01088 INDIGENA: inductive prediction of disease-gene associations using phenotype ontologies 2026-02-01 q-bio.QM q-bio.QM https://arxiv.org/abs/2602.01088 False False 2602.01230 Toward Interpretable and Generalizable AI in Regulatory Genomics 2026-02-01 q-bio.GN q-bio.GN https://arxiv.org/abs/2602.01230 False False 2602.01482 Community-Level Modeling of Gyral Folding Patterns for Robust and Anatomically Informed Individualized Brain Mapping 2026-02-01 cs.AI;cs.CV;q-bio.NC q-bio.NC https://arxiv.org/abs/2602.01482 False False 2602.03875 Reversible Deep Learning for 13C NMR in Chemoinformatics: On Structures and Spectra 2026-02-01 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2602.03875 False False 2602.01347 Vulnerability-Amplifying Interaction Loops: a systematic failure mode in AI chatbot mental-health interactions 2026-02-01 cs.HC;q-bio.NC q-bio.NC https://arxiv.org/abs/2602.01347 False False 2602.03875 Reversible Deep Learning for 13C NMR in Chemoinformatics: On Structures and Spectra 2026-02-01 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2602.03875 False False 2602.03875 Reversible Deep Learning for 13C NMR in Chemoinformatics: On Structures and Spectra 2026-02-01 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2602.03875 False False 2602.01347 A clinically validated framework for auditing AI chatbot behavior in mental health interactions 2026-02-01 cs.HC;q-bio.NC q-bio.NC https://arxiv.org/abs/2602.01347 False False 2602.01347 A clinically validated framework for auditing AI chatbot behavior in mental health interactions 2026-02-01 cs.HC;q-bio.NC q-bio.NC https://arxiv.org/abs/2602.01347 False False 2602.00464 A 30-item Test for Assessing Chinese Character Amnesia in Child Handwriters 2026-01-31 cs.CV;q-bio.QM q-bio.QM https://arxiv.org/abs/2602.00464 False False 2602.00586 RAG-GNN: Integrating Retrieved Knowledge with Graph Neural Networks for Precision Medicine 2026-01-31 cs.AI;cs.LG;q-bio.MN q-bio.MN https://arxiv.org/abs/2602.00586 False False 2602.00660 Phase Transitions in Unsupervised Feature Selection 2026-01-31 physics.data-an;q-bio.BM q-bio.BM https://arxiv.org/abs/2602.00660 False False 2602.00782 Controlling Repetition in Protein Language Models 2026-01-31 cs.AI;q-bio.BM q-bio.BM https://arxiv.org/abs/2602.00782 False False 2602.00832 Size and shape of terrestrial animals 2026-01-31 physics.bio-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2602.00832 False False 2602.02587 The Evolution of Lying in a Spatially-Explicit Prisoner's Dilemma Model 2026-01-31 cs.GT;physics.soc-ph;physics.stat-mech;q-bio.PE q-bio.PE https://arxiv.org/abs/2602.02587 False False 2602.00663 SEISMO: Increasing Sample Efficiency in Molecular Optimization with a Trajectory-Aware LLM Agent 2026-01-31 cs.AI;cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2602.00663 False False 2602.00586 RAG-GNN: Integrating Retrieved Knowledge with Graph Neural Networks for Precision Medicine 2026-01-31 cs.AI;cs.LG;q-bio.MN q-bio.MN https://arxiv.org/abs/2602.00586 False False 2602.00586 RAG-GNN: Integrating Retrieved Knowledge with Graph Neural Networks for Precision Medicine 2026-01-31 cs.AI;cs.LG;q-bio.MN q-bio.MN https://arxiv.org/abs/2602.00586 False False 2601.22613 Effects of multi-phase control mechanism on fibroblast dynamics: A segmented mathematical modeling approach 2026-01-30 q-bio.CB q-bio.CB https://arxiv.org/abs/2601.22613 False False 2601.22619 Epigenetic state inheritance drivers drug-tolerant persister-induced resistance in solid tumors: A stochastic agent-based model 2026-01-30 q-bio.PE q-bio.PE https://arxiv.org/abs/2601.22619 False False 2601.22684 BioModelsRAG: A Biological Modeling Assistant Using RAG (Retrieval Augmented Generation) 2026-01-30 q-bio.MN q-bio.MN https://arxiv.org/abs/2601.22684 False False 2601.22757 Unveiling Scaling Behaviors in Molecular Language Models: Effects of Model Size, Data, and Representation 2026-01-30 cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2601.22757 False False 2601.22866 Classification of SARS-CoV-2 Variants through The Epistatical Circos Plots with Convolutional Neural Networks 2026-01-30 q-bio.GN q-bio.GN https://arxiv.org/abs/2601.22866 False False 2601.22918 Microbiome association diversity reflects proximity to the edge of instability 2026-01-30 q-bio.PE;q-bio.QM q-bio.PE https://arxiv.org/abs/2601.22918 False False 2601.22967 How adaptation to food resources and death rates shape oscillatory dynamics in a microbial population 2026-01-30 physics.bio-ph;physics.soft;q-bio.PE q-bio.PE https://arxiv.org/abs/2601.22967 False False 2601.22971 Dynamic modelling and evaluation of preclinical trials in acute leukaemia 2026-01-30 q-bio.QM;stat.ME q-bio.QM https://arxiv.org/abs/2601.22971 False False 2601.23023 The Where and How of Touch: A Review of Tactile Localization Research 2026-01-30 q-bio.NC q-bio.NC https://arxiv.org/abs/2601.23023 False False 2601.23090 Omni-fMRI: A Universal Atlas-Free fMRI Foundation Model 2026-01-30 cs.CE;q-bio.QM q-bio.QM https://arxiv.org/abs/2601.23090 False False 2601.23212 Disentangling multispecific antibody function with graph neural networks 2026-01-30 cs.AI;q-bio.BM q-bio.BM https://arxiv.org/abs/2601.23212 False False 2602.02553 Indirect Reciprocity with Environmental Feedback 2026-01-30 math.DS;physics.soc-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2602.02553 False False 2602.02558 PA-MIL: Phenotype-Aware Multiple Instance Learning Guided by Language Prompting and Genotype-to-Phenotype Relationships 2026-01-30 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2602.02558 False False 2602.02562 A Distinct Communication Strategies Model of the Double Empathy Problem 2026-01-30 math.DS;physics.soc-ph;q-bio.NC q-bio.NC https://arxiv.org/abs/2602.02562 False False 2602.00197 Rank-and-Reason: Multi-Agent Collaboration Accelerates Zero-Shot Protein Mutation Prediction 2026-01-30 cs.AI;cs.CL;q-bio.QM q-bio.QM https://arxiv.org/abs/2602.00197 False False 2602.00193 Multi-strain SIS dynamics with coinfection under host population structure 2026-01-30 math.DS;q-bio.PE q-bio.PE https://arxiv.org/abs/2602.00193 False False 2602.00261 You ain't seen nothing, and yet: Future biochemical concentrations can be predicted with surprisingly high accuracy 2026-01-30 physics.bio-ph;q-bio.MN q-bio.MN https://arxiv.org/abs/2602.00261 False False 2602.09034 Recovering Whole-Brain Causal Connectivity under Indirect Observation with Applications to Human EEG and fMRI 2026-01-30 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2602.09034 False False 2602.09036 Predicting Gene Disease Associations in Type 2 Diabetes Using Machine Learning on Single-Cell RNA-Seq Data 2026-01-30 cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2602.09036 False False 2602.11189 MuCO: Generative Peptide Cyclization Empowered by Multi-stage Conformation Optimization 2026-01-30 cs.AI;q-bio.BM q-bio.BM https://arxiv.org/abs/2602.11189 False False 2601.22866 Classification of SARS-CoV-2 Variants through The Epistatical Circos Plots with Convolutional Neural Networks 2026-01-30 q-bio.GN q-bio.GN https://arxiv.org/abs/2601.22866 False False 2601.22866 Classification of SARS-CoV-2 Variants through The Epistatical Circos Plots with Convolutional Neural Networks 2026-01-30 q-bio.GN q-bio.GN https://arxiv.org/abs/2601.22866 False False 2602.09034 Latent-Space Causal Discovery from Indirect Neuroimaging Observations 2026-01-30 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2602.09034 False False 2602.09034 Latent-Space Causal Discovery from Indirect Neuroimaging Observations 2026-01-30 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2602.09034 False False 2602.11189 MuCO: Generative Peptide Cyclization Empowered by Multi-stage Conformation Optimization 2026-01-30 cs.AI;q-bio.BM q-bio.BM https://arxiv.org/abs/2602.11189 False False 2602.11189 MuCO: Generative Peptide Cyclization Empowered by Multi-stage Conformation Optimization 2026-01-30 cs.AI;q-bio.BM q-bio.BM https://arxiv.org/abs/2602.11189 False False 2601.23023 The Where and How of Touch: A Review of Tactile Localization Research 2026-01-30 q-bio.NC q-bio.NC https://arxiv.org/abs/2601.23023 False False 2601.23023 The Where and How of Touch: A Review of Tactile Localization Research 2026-01-30 q-bio.NC q-bio.NC https://arxiv.org/abs/2601.23023 False False 2602.00261 You ain't seen nothing, and yet: Future biochemical concentrations can be predicted with surprisingly high accuracy 2026-01-30 physics.bio-ph;q-bio.MN q-bio.MN https://arxiv.org/abs/2602.00261 False False 2602.00261 You ain't seen nothing, and yet: Future biochemical concentrations can be predicted with surprisingly high accuracy 2026-01-30 physics.bio-ph;q-bio.MN q-bio.MN https://arxiv.org/abs/2602.00261 False False 2601.22971 Dynamic modelling and evaluation of preclinical trials in acute leukaemia 2026-01-30 q-bio.QM;stat.ME q-bio.QM https://arxiv.org/abs/2601.22971 False False 2601.22971 Dynamic modelling and evaluation of preclinical trials in acute leukaemia 2026-01-30 q-bio.QM;stat.ME q-bio.QM https://arxiv.org/abs/2601.22971 False False 2601.22866 Classification of SARS-CoV-2 Variants through The Epistatical Circos Plots with Convolutional Neural Networks 2026-01-30 q-bio.GN q-bio.GN https://arxiv.org/abs/2601.22866 False False 2601.22866 Classification of SARS-CoV-2 Variants through The Epistatical Circos Plots with Convolutional Neural Networks 2026-01-30 q-bio.GN q-bio.GN https://arxiv.org/abs/2601.22866 False False 2601.21216 Multiple binding modes of AKT on PIP$_3$-containing membranes 2026-01-29 physics.bio-ph;physics.comp-ph;q-bio.BM q-bio.BM https://arxiv.org/abs/2601.21216 False False 2601.21407 BrainFuse: a unified infrastructure integrating realistic biological modeling and core AI methodology 2026-01-29 cs.NE;q-bio.NC q-bio.NC https://arxiv.org/abs/2601.21407 False False 2601.21478 Differential Dynamic Causal Nets: Model Construction, Identification and Group Comparisons 2026-01-29 q-bio.NC;stat.AP;stat.ML q-bio.NC https://arxiv.org/abs/2601.21478 False False 2601.21480 Long-term evolution of regulatory DNA sequences. Part 2: Theory and future challenges 2026-01-29 q-bio.PE q-bio.PE https://arxiv.org/abs/2601.21480 False False 2601.21508 How 'Neural' is a Neural Foundation Model? 2026-01-29 q-bio.NC q-bio.NC https://arxiv.org/abs/2601.21508 False False 2601.21643 Computational investigation of single herbal drugs in Ayurveda for diabetes and obesity using knowledge graph and network pharmacology 2026-01-29 q-bio.MN;q-bio.SC q-bio.MN https://arxiv.org/abs/2601.21643 False False 2601.21743 Impact of behavioral heterogeneity on epidemic outcome and its mapping into effective network topologies 2026-01-29 physics.soc-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2601.21743 False False 2601.22128 The Patient is not a Moving Document: A World Model Training Paradigm for Longitudinal EHR 2026-01-29 cs.AI;cs.CE;q-bio.QM q-bio.QM https://arxiv.org/abs/2601.22128 False False 2601.22193 Structural properties of distance-bounded phylogenetic reconciliation 2026-01-29 q-bio.PE q-bio.PE https://arxiv.org/abs/2601.22193 False False 2601.22203 Beyond Conditional Computation: Retrieval-Augmented Genomic Foundation Models with Gengram 2026-01-29 cs.AI;q-bio.GN q-bio.GN https://arxiv.org/abs/2601.22203 False False 2601.22408 Minimal-Action Discrete Schrödinger Bridge Matching for Peptide Sequence Design 2026-01-29 cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2601.22408 False False 2602.00143 Early warning prediction: Onsager-Machlup vs Schrödinger 2026-01-29 cs.LG;q-bio.QM;stat.ML q-bio.QM https://arxiv.org/abs/2602.00143 False False 2602.00156 Accelerating De Novo Genome Assembly via Quantum-Assisted Graph Optimization with Bitstring Recovery 2026-01-29 physics.quant-ph;q-bio.GN q-bio.GN https://arxiv.org/abs/2602.00156 False False 2602.00163 Deep Learning Pose Estimation for Multi-Label Recognition of Combined Hyperkinetic Movement Disorders 2026-01-29 cs.CV;q-bio.NC q-bio.NC https://arxiv.org/abs/2602.00163 False False 2602.00157 ProDCARL: Reinforcement Learning-Aligned Diffusion Models for De Novo Antimicrobial Peptide Design 2026-01-29 cs.AI;q-bio.BM;q-bio.QM q-bio.BM https://arxiv.org/abs/2602.00157 False False 2602.00156 Accelerating De Novo Genome Assembly via Quantum-Assisted Graph Optimization with Bitstring Recovery 2026-01-29 physics.quant-ph;q-bio.GN q-bio.GN https://arxiv.org/abs/2602.00156 False False 2602.00156 Accelerating De Novo Genome Assembly via Quantum-Assisted Graph Optimization with Bitstring Recovery 2026-01-29 physics.quant-ph;q-bio.GN q-bio.GN https://arxiv.org/abs/2602.00156 False False 2602.00163 Deep Learning Pose Estimation for Multi-Label Recognition of Combined Hyperkinetic Movement Disorders 2026-01-29 cs.CV;q-bio.NC q-bio.NC https://arxiv.org/abs/2602.00163 False False 2602.00163 Deep Learning Pose Estimation for Multi-Label Recognition of Combined Hyperkinetic Movement Disorders 2026-01-29 cs.CV;q-bio.NC q-bio.NC https://arxiv.org/abs/2602.00163 False False 2602.00163 Deep Learning Pose Estimation for Multi-Label Recognition of Combined Hyperkinetic Movement Disorders 2026-01-29 cs.CV;q-bio.NC q-bio.NC https://arxiv.org/abs/2602.00163 False False 2602.00163 Deep Learning Pose Estimation for Multi-Label Recognition of Combined Hyperkinetic Movement Disorders 2026-01-29 cs.CV;q-bio.NC q-bio.NC https://arxiv.org/abs/2602.00163 False False 2602.00163 Deep Learning Pose Estimation for Multi-Label Recognition of Combined Hyperkinetic Movement Disorders 2026-01-29 cs.CV;q-bio.NC q-bio.NC https://arxiv.org/abs/2602.00163 False False 2601.20236 Implications of temporal sampling in voltage imaging microscopy 2026-01-28 physics.optics;q-bio.NC;q-bio.QM q-bio.NC https://arxiv.org/abs/2601.20236 False False 2601.20343 CEI: A Clonal Expansion Identifier for T-cell receptor clones following SARS-CoV-2 vaccination 2026-01-28 q-bio.QM q-bio.QM https://arxiv.org/abs/2601.20343 False False 2601.20416 Promotion of cooperation in deme-structured populations with growth-merging dynamics 2026-01-28 q-bio.PE q-bio.PE https://arxiv.org/abs/2601.20416 False False 2601.20447 Assembling the Mind's Mosaic: Towards EEG Semantic Intent Decoding 2026-01-28 cs.AI;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2601.20447 False False 2601.20480 An explainable framework for the relationship between dementia and glucose metabolism patterns 2026-01-28 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2601.20480 False False 2601.20606 WFR-MFM: One-Step Inference for Dynamic Unbalanced Optimal Transport 2026-01-28 cs.AI;cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2601.20606 False False 2601.20670 Noise-induced excitability: bloom, bust and extirpation in autotoxic population dynamics 2026-01-28 physics.AO;physics.stat-mech;q-bio.PE q-bio.PE https://arxiv.org/abs/2601.20670 False False 2601.20771 Cross-Country Learning for National Infectious Disease Forecasting Using European Data 2026-01-28 cs.LG;q-bio.PE q-bio.PE https://arxiv.org/abs/2601.20771 False False 2601.20891 ATTNSOM: Learning Cross-Isoform Attention for Cytochrome P450 Site-of-Metabolism 2026-01-28 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2601.20891 False False 2601.20981 Diversifying Toxicity Search in Large Language Models Through Speciation 2026-01-28 cs.NE;q-bio.PE q-bio.PE https://arxiv.org/abs/2601.20981 False False 2602.06994 SurfAge-Net: A Hierarchical Surface-Based Network for Interpretable Fine-Grained Brain Age Prediction 2026-01-28 cs.AI;cs.CV;q-bio.NC q-bio.NC https://arxiv.org/abs/2602.06994 False False 2601.21079 The quenched coalescent for structured diploid populations with large migrations and uneven offspring distributions 2026-01-28 math.PR;q-bio.PE q-bio.PE https://arxiv.org/abs/2601.21079 False False 2601.20480 An explainable framework for the relationship between dementia and glucose metabolism patterns 2026-01-28 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2601.20480 False False 2601.20981 Diversifying Toxicity Search in Large Language Models Through Speciation 2026-01-28 cs.NE;q-bio.PE q-bio.PE https://arxiv.org/abs/2601.20981 False False 2601.20670 Noise-induced excitability: bloom, bust and extirpation in autotoxic population dynamics 2026-01-28 physics.AO;physics.stat-mech;q-bio.PE q-bio.PE https://arxiv.org/abs/2601.20670 False False 2601.20670 Noise-induced excitability: bloom, bust and extirpation in autotoxic population dynamics 2026-01-28 physics.AO;physics.stat-mech;q-bio.PE q-bio.PE https://arxiv.org/abs/2601.20670 False False 2601.20771 Cross-Country Learning for National Infectious Disease Forecasting Using European Data 2026-01-28 cs.LG;q-bio.PE q-bio.PE https://arxiv.org/abs/2601.20771 False False 2601.20771 Cross-Country Learning for National Infectious Disease Forecasting Using European Data 2026-01-28 cs.LG;q-bio.PE q-bio.PE https://arxiv.org/abs/2601.20771 False False 2601.19064 LvD: A New Algorithm for Computing the Likelihood of a Phylogeny 2026-01-27 cs.DS;q-bio.PE q-bio.PE https://arxiv.org/abs/2601.19064 False False 2601.19125 Stroboscopic motion reversals in delay-coupled neural fields 2026-01-27 math.DS;physics.PS;q-bio.NC q-bio.NC https://arxiv.org/abs/2601.19125 False False 2601.19205 EnzyPGM: Pocket-conditioned Generative Model for Substrate-specific Enzyme Design 2026-01-27 cs.AI;cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2601.19205 False False 2601.19257 PCEvo: Path-Consistent Molecular Representation via Virtual Evolutionary 2026-01-27 cs.AI;cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2601.19257 False False 2601.19384 GenPairX: A Hardware-Algorithm Co-Designed Accelerator for Paired-End Read Mapping 2026-01-27 cs.AR;q-bio.GN q-bio.GN https://arxiv.org/abs/2601.19384 False False 2601.19681 Long-term evolution of regulatory DNA sequences. Part 1: Simulations on global, biophysically-realistic genotype-phenotype maps 2026-01-27 q-bio.PE q-bio.PE https://arxiv.org/abs/2601.19681 False False 2601.20123 Optimal illness policy for an unethical daycare center 2026-01-27 math.DS;q-bio.PE q-bio.PE https://arxiv.org/abs/2601.20123 False False 2601.20135 Control systems for synthetic biology and a case-study in cell fate reprogramming 2026-01-27 cs.SY;eess.SY;q-bio.MN q-bio.MN https://arxiv.org/abs/2601.20135 False False 2601.22177 Emergent spatial organization of competing species under environmental stress and cooperation 2026-01-27 math.DS;q-bio.PE q-bio.PE https://arxiv.org/abs/2601.22177 False False 2601.19149 GPCR-Filter: a deep learning framework for efficient and precise GPCR modulator discovery 2026-01-27 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2601.19149 False False 2601.18214 A model for a population of trees structured by phenological traits 2026-01-26 q-bio.PE q-bio.PE https://arxiv.org/abs/2601.18214 False False 2601.18286 Closed Eyes and Coil Size -- Effects on Motor Threshold and Intracortical Inhibition, measured with TMS 2026-01-26 q-bio.NC q-bio.NC https://arxiv.org/abs/2601.18286 False False 2601.18703 Chemotaxis-inspired PDE models of airborne infectious disease transmission: epidemiologically-motivated mathematical and numerical analyses 2026-01-26 math.AP;q-bio.PE q-bio.PE https://arxiv.org/abs/2601.18703 False False 2601.18713 Point transformer for protein structural heterogeneity analysis using CryoEM 2026-01-26 cs.AI;q-bio.QM q-bio.QM https://arxiv.org/abs/2601.18713 False False 2601.18716 Conditioned Generative Modeling of Molecular Glues: A Realistic AI Approach for Synthesizable Drug-like Molecules 2026-01-26 cs.AI;q-bio.BM q-bio.BM https://arxiv.org/abs/2601.18716 False False 2601.18921 Accelerating Large-Scale Cheminformatics Using a Byte-Offset Indexing Architecture for Terabyte-Scale Data Integration 2026-01-26 cs.CE;cs.DB;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2601.18921 False False 2601.18946 Schema-based active inference supports rapid generalization of experience and frontal cortical coding of abstract structure 2026-01-26 q-bio.NC q-bio.NC https://arxiv.org/abs/2601.18946 False False 2601.19019 Smooth embeddings in contracting recurrent networks driven by regular dynamics: A synthesis for neural representation 2026-01-26 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2601.19019 False False 2601.19037 XIMP: Cross Graph Inter-Message Passing for Molecular Property Prediction 2026-01-26 cs.LG;q-bio.QM;stat.ML q-bio.QM https://arxiv.org/abs/2601.19037 False False 2601.18604 LaCoGSEA: Unsupervised deep learning for pathway analysis via latent correlation 2026-01-26 cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2601.18604 False False 2601.18640 TwinPurify: Purifying gene expression data to reveal tumor-intrinsic transcriptional programs via self-supervised learning 2026-01-26 cs.LG;q-bio.MN q-bio.MN https://arxiv.org/abs/2601.18640 False False 2601.18435 The Quantum Cliff: A Critical Proton Tunneling Threshold Determines Clinical Severity in RPE65-Mediated Retinal Disease 2026-01-26 cs.ET;q-bio.BM q-bio.BM https://arxiv.org/abs/2601.18435 False False 2601.19002 Y-Trim: Evidence-gated Adaptase tail trimming for single-stranded bisulfite sequencing 2026-01-26 q-bio.GN q-bio.GN https://arxiv.org/abs/2601.19002 False False 2601.18946 Schema-based active inference supports rapid generalization of experience and frontal cortical coding of abstract structure 2026-01-26 q-bio.NC q-bio.NC https://arxiv.org/abs/2601.18946 False False 2601.18921 Accelerating Large-Scale Cheminformatics Using a Byte-Offset Indexing Architecture for Terabyte-Scale Data Integration 2026-01-26 cs.CE;cs.DB;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2601.18921 False False 2601.19019 Embedding of Low-Dimensional Sensory Dynamics in Recurrent Networks: Implications for the Geometry of Neural Representation 2026-01-26 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2601.19019 False False 2601.19019 Embedding of Low-Dimensional Sensory Dynamics in Recurrent Networks: Implications for the Geometry of Neural Representation 2026-01-26 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2601.19019 False False 2601.19019 Embedding of Low-Dimensional Sensory Dynamics in Recurrent Networks: Implications for the Geometry of Neural Representation 2026-01-26 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2601.19019 False False 2601.19019 Embedding of Low-Dimensional Sensory Dynamics in Recurrent Networks: Implications for the Geometry of Neural Representation 2026-01-26 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2601.19019 False False 2601.17669 Quantitative cancer-immunity cycle modeling to optimize bevacizumab and atezolizumab combination therapy for advanced renal cell carcinoma 2026-01-25 q-bio.QM;q-bio.TO q-bio.QM https://arxiv.org/abs/2601.17669 0.7556 0.8019 True 6 6.75 False 2601.17763 Tracking dynamics of superspreading through contacts, exposures, and transmissions in edge-based network epidemics 2026-01-25 q-bio.PE q-bio.PE https://arxiv.org/abs/2601.17763 False False 2601.17796 AI and World Models 2026-01-25 q-bio.NC q-bio.NC https://arxiv.org/abs/2601.17796 False False 2601.17808 Motif Diversity in Human Liver ChIP-seq Data Using MAP-Elites 2026-01-25 cs.NE;q-bio.GN q-bio.GN https://arxiv.org/abs/2601.17808 False False 2601.17808 Motif Diversity in Human Liver ChIP-seq Data Using MAP-Elites 2026-01-25 cs.NE;q-bio.GN q-bio.GN https://arxiv.org/abs/2601.17808 False False 2601.17763 Tracking dynamics of superspreading through contacts, exposures, and transmissions in edge-based network epidemics 2026-01-25 q-bio.PE q-bio.PE https://arxiv.org/abs/2601.17763 False False 2601.17763 Tracking dynamics of superspreading through contacts, exposures, and transmissions in edge-based network epidemics 2026-01-25 q-bio.PE q-bio.PE https://arxiv.org/abs/2601.17763 False False 2601.17763 Tracking dynamics of superspreading through contacts, exposures, and transmissions in edge-based network epidemics 2026-01-25 q-bio.PE q-bio.PE https://arxiv.org/abs/2601.17763 False False 2601.17763 Tracking dynamics of superspreading through contacts, exposures, and transmissions in edge-based network epidemics 2026-01-25 q-bio.PE q-bio.PE https://arxiv.org/abs/2601.17763 False False 2601.17466 $β$-diversity and Graph Sheaf Laplacians 2026-01-24 q-bio.PE q-bio.PE https://arxiv.org/abs/2601.17466 False False 2601.17504 BMDS-Net: A Bayesian Multi-Modal Deep Supervision Network for Robust Brain Tumor Segmentation 2026-01-24 cs.CV;q-bio.QM q-bio.QM https://arxiv.org/abs/2601.17504 False False 2601.17523 Unsupervised sleep-like intra- and inter-layer plasticity categorizes and improves energy efficiency in a multilayer spiking network 2026-01-24 physics.bio-ph;q-bio.NC q-bio.NC https://arxiv.org/abs/2601.17523 False False 2601.17528 Sampling in the Euclidean Motion Group and a Problem from Brain's Primary Visual Cortex 2026-01-24 math.FA;q-bio.NC q-bio.NC https://arxiv.org/abs/2601.17528 False False 2601.17590 Travelling Waves in Wolbachia Spread Dynamics 2026-01-24 math.DS;q-bio.PE q-bio.PE https://arxiv.org/abs/2601.17590 False False 2601.18819 Descriptive and risk analysis of vehicle movements linked to porcine reproductive and respiratory syndrome and porcine epidemic diarrhea transmission in US commercial swine farms 2026-01-24 q-bio.QM q-bio.QM https://arxiv.org/abs/2601.18819 False False 2601.17582 GenAI-Net: A Generative AI Framework for Automated Biomolecular Network Design 2026-01-24 cs.AI;cs.LG;cs.SY;eess.SY;q-bio.MN;q-bio.QM q-bio.MN https://arxiv.org/abs/2601.17582 False False 2601.17504 BMDS-Net:Deployment-aware multi-modal brain tumor segmentation with adaptive fusion,decoder regularization,and Bayesian calibration 2026-01-24 cs.CV;q-bio.QM q-bio.QM https://arxiv.org/abs/2601.17504 False False 2601.17528 Sampling in the Euclidean Motion Group and a Problem from Brain's Primary Visual Cortex 2026-01-24 math.FA;q-bio.NC q-bio.NC https://arxiv.org/abs/2601.17528 False False 2601.16378 Cognitively-Inspired Tokens Overcome Egocentric Bias in Multimodal Models 2026-01-23 cs.AI;cs.CV;q-bio.NC q-bio.NC https://arxiv.org/abs/2601.16378 False False 2601.16384 Modeling tumor progression in heterogeneous microenvironments: A cellular automata approach 2026-01-23 q-bio.CB q-bio.CB https://arxiv.org/abs/2601.16384 False False 2601.17102 Domain-Aware Geometric Multimodal Learning for Multi-Domain Protein-Ligand Affinity Prediction 2026-01-23 q-bio.QM q-bio.QM https://arxiv.org/abs/2601.17102 False False 2601.17184 FASTR: Reimagining FASTQ via Compact Image-inspired Representation 2026-01-23 cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2601.17184 False False 2601.17228 Semi-Supervised Domain Adaptation with Latent Diffusion for Pathology Image Classification 2026-01-23 cs.CV;q-bio.QM q-bio.QM https://arxiv.org/abs/2601.17228 False False 2601.16593 Adaptive dynamics of eco-evolutionary repeated games: Effect of reward and punishment 2026-01-23 physics.AO;physics.soc-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2601.16593 False False 2601.18818 LabelKAN -- Kolmogorov-Arnold Networks for Inter-Label Learning: Avian Community Learning 2026-01-23 cs.AI;q-bio.PE;q-bio.QM q-bio.PE https://arxiv.org/abs/2601.18818 False False 2601.17138 AI Developments for T and B Cell Receptor Modeling and Therapeutic Design 2026-01-23 q-bio.BM q-bio.BM https://arxiv.org/abs/2601.17138 False False 2601.16689 Agonist-Antagonist Neural Coordination without Mechanical Coupling after Targeted Muscle Reinnervation 2026-01-23 eess.SP;q-bio.NC q-bio.NC https://arxiv.org/abs/2601.16689 False False 2601.15689 Resting-State Functional Connectivity Correlates of Emotional Memory Control under Cognitive load in Subclinical Anxiety 2026-01-22 q-bio.NC q-bio.NC https://arxiv.org/abs/2601.15689 False False 2601.15771 Rethinking Drug-Drug Interaction Modeling as Generalizable Relation Learning 2026-01-22 cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2601.15771 False False 2601.15886 PhageMind: Generalized Strain-level Phage Host Range Prediction via Meta-learning 2026-01-22 q-bio.GN q-bio.GN https://arxiv.org/abs/2601.15886 False False 2601.15952 Reconstructing Patched or Partial Holograms to allow for Whole Slide Imaging with a Self-Referencing Holographic Microscope 2026-01-22 eess.SP;q-bio.QM q-bio.QM https://arxiv.org/abs/2601.15952 False False 2601.17061 How Information Evolves: Stability-Driven Assembly and the Emergence of a Natural Genetic Algorithm 2026-01-22 cs.NE;physics.AO;q-bio.PE q-bio.PE https://arxiv.org/abs/2601.17061 False False 2601.20878 Log Focal Frequency Loss for Bioimage Restoration 2026-01-22 q-bio.QM q-bio.QM https://arxiv.org/abs/2601.20878 False False 2601.16151 In vitro binding energies capture Klf4 occupancy across the human genome 2026-01-22 physics.bio-ph;q-bio.BM;q-bio.GN q-bio.BM https://arxiv.org/abs/2601.16151 False False 2601.15689 Resting-State Functional Connectivity Correlates of Emotional Memory Control under Cognitive load in Subclinical Anxiety 2026-01-22 q-bio.NC q-bio.NC https://arxiv.org/abs/2601.15689 False False 2601.15689 Resting-State Functional Connectivity Correlates of Emotional Memory Control under Cognitive load in Subclinical Anxiety 2026-01-22 q-bio.NC q-bio.NC https://arxiv.org/abs/2601.15689 False False 2601.17061 How Information Evolves: Stability-Driven Assembly and the Emergence of a Natural Genetic Algorithm 2026-01-22 cs.NE;physics.AO;q-bio.PE q-bio.PE https://arxiv.org/abs/2601.17061 False False 2601.17061 How Information Evolves: Stability-Driven Assembly and the Emergence of a Natural Genetic Algorithm 2026-01-22 cs.NE;physics.AO;q-bio.PE q-bio.PE https://arxiv.org/abs/2601.17061 False False 2601.14574 De novo design of protein binders targeting the human sweet taste receptor as potential sweet proteins 2026-01-21 q-bio.BM q-bio.BM https://arxiv.org/abs/2601.14574 False False 2601.14577 FBApro: A fast, simple linear transformation for diverse metabolic modeling tasks 2026-01-21 q-bio.QM q-bio.QM https://arxiv.org/abs/2601.14577 False False 2601.14624 Biological Sequence Clustering: A Survey 2026-01-21 q-bio.GN q-bio.GN https://arxiv.org/abs/2601.14624 False False 2601.14632 The missing links: Evaluating contact tracing with incomplete data in large metropolitan areas during an epidemic 2026-01-21 physics.soc-ph;physics.stat-mech;q-bio.PE q-bio.PE https://arxiv.org/abs/2601.14632 False False 2601.14653 Efficient Imputation for Patch-based Missing Single-cell Data via Cluster-regularized Optimal Transport 2026-01-21 cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2601.14653 False False 2601.14678 Transfer Learning from One Cancer to Another via Deep Learning Domain Adaptation 2026-01-21 cs.AI;cs.CV;cs.LG;cs.NE;q-bio.TO q-bio.TO https://arxiv.org/abs/2601.14678 False False 2601.14869 Early warning signals of non-critical transitions from linearised time-varying dynamics with applications to epidemic systems 2026-01-21 q-bio.PE q-bio.PE https://arxiv.org/abs/2601.14869 False False 2601.14961 Power-Law Scaling in the Classification Performance of Small-Scale Spiking Neural Networks 2026-01-21 q-bio.NC q-bio.NC https://arxiv.org/abs/2601.14961 False False 2601.15032 Single-Node Wilson--Cowan Model Accounts for Speech-Evoked $γ$-Band Deficits in Schizophrenia 2026-01-21 q-bio.NC q-bio.NC https://arxiv.org/abs/2601.15032 False False 2601.15091 Circadian Modulation of Semantic Exploration in Social Media Language 2026-01-21 cs.CL;cs.CY;cs.SI;q-bio.NC q-bio.NC https://arxiv.org/abs/2601.15091 False False 2601.15144 Modification speed and radius of higher-order interactions alter the oscillatory dynamics in an agent-based model 2026-01-21 q-bio.PE q-bio.PE https://arxiv.org/abs/2601.15144 False False 2601.15273 How high-resolution agent-based models can improve fundamental insights in tissue development and cell culturing methods 2026-01-21 q-bio.QM q-bio.QM https://arxiv.org/abs/2601.15273 False False 2601.15362 Flocking by stopping: a novel mechanism of emergent order in collective movement 2026-01-21 q-bio.QM q-bio.QM https://arxiv.org/abs/2601.15362 False False 2601.15388 Final size of a structured SIRD Model with active-population force of infection 2026-01-21 q-bio.PE q-bio.PE https://arxiv.org/abs/2601.15388 False False 2601.15462 Dynamic Mean Field Theories for Nonlinear Noise in Recurrent Neuronal Networks 2026-01-21 math.DS;q-bio.NC q-bio.NC https://arxiv.org/abs/2601.15462 False False 2601.15504 SAGE-FM: A lightweight and interpretable spatial transcriptomics foundation model 2026-01-21 cs.LG;q-bio.GN;q-bio.QM q-bio.GN https://arxiv.org/abs/2601.15504 False False 2601.15517 A computation of maximum likelihood for 4-states-triplets under Jukes-Cantor and MC 2026-01-21 q-bio.PE q-bio.PE https://arxiv.org/abs/2601.15517 False False 2601.14795 Validating Behavioral Proxies for Disease Risk Monitoring via Large-Scale E-commerce Data 2026-01-21 cs.SI;q-bio.PE q-bio.PE https://arxiv.org/abs/2601.14795 False False 2601.15219 A height-based metaconcept for rooted tree balance and its implications for the $B_1$ index 2026-01-21 math.CO;q-bio.PE q-bio.PE https://arxiv.org/abs/2601.15219 False False 2601.15530 Machine learning-enhanced non-amnestic Alzheimer's disease diagnosis from MRI and clinical features 2026-01-21 cs.LG;q-bio.NC;q-bio.QM q-bio.NC https://arxiv.org/abs/2601.15530 False False 2602.12286 Alignment or Integration? Rethinking Multimodal Fusion in DNA-language Foundation Models 2026-01-21 cs.CL;q-bio.GN q-bio.GN https://arxiv.org/abs/2602.12286 False False 2601.14969 Robust Machine Learning for Regulatory Sequence Modeling under Biological and Technical Distribution Shifts 2026-01-21 q-bio.GN;stat.ML q-bio.GN https://arxiv.org/abs/2601.14969 False False 2601.15502 Optical Manipulation of Erythrocytes via Evanescent Waves: Assessing Glucose-Induced Mobility Variations 2026-01-21 physics.bio-ph;physics.optics;q-bio.CB;q-bio.QM q-bio.CB https://arxiv.org/abs/2601.15502 False False 2602.12286 Mind the Gap No More: Achieving Zero-Gap Multimodal Integration via One Tokenizer 2026-01-21 cs.CL;q-bio.GN q-bio.GN https://arxiv.org/abs/2602.12286 False False 2602.12286 Mind the Gap No More: Achieving Zero-Gap Multimodal Integration via One Tokenizer 2026-01-21 cs.CL;q-bio.GN q-bio.GN https://arxiv.org/abs/2602.12286 False False 2601.14577 FBApro: A fast, simple linear transformation for diverse metabolic modeling tasks 2026-01-21 q-bio.QM q-bio.QM https://arxiv.org/abs/2601.14577 False False 2601.14577 FBApro: A fast, simple linear transformation for diverse metabolic modeling tasks 2026-01-21 q-bio.QM q-bio.QM https://arxiv.org/abs/2601.14577 False False 2601.14653 Efficient Imputation for Patch-based Missing Single-cell Data via Cluster-regularized Optimal Transport 2026-01-21 cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2601.14653 False False 2601.14653 Efficient Imputation for Patch-based Missing Single-cell Data via Cluster-regularized Optimal Transport 2026-01-21 cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2601.14653 False False 2601.14653 Efficient Imputation for Patch-based Missing Single-cell Data via Cluster-regularized Optimal Transport 2026-01-21 cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2601.14653 False False 2601.14961 Power-Law Scaling in the Classification Performance of Small-Scale Spiking Neural Networks 2026-01-21 q-bio.NC q-bio.NC https://arxiv.org/abs/2601.14961 False False 2601.14961 Power-Law Scaling in the Classification Performance of Small-Scale Spiking Neural Networks 2026-01-21 q-bio.NC q-bio.NC https://arxiv.org/abs/2601.14961 False False 2601.14632 The missing links: Evaluating contact tracing with incomplete data in large metropolitan areas during an epidemic 2026-01-21 physics.soc-ph;physics.stat-mech;q-bio.PE q-bio.PE https://arxiv.org/abs/2601.14632 False False 2601.14632 The missing links: Evaluating contact tracing with incomplete data in large metropolitan areas during an epidemic 2026-01-21 physics.soc-ph;physics.stat-mech;q-bio.PE q-bio.PE https://arxiv.org/abs/2601.14632 False False 2601.15219 A height-based metaconcept for rooted tree balance and its implications for the $B_1$ index 2026-01-21 math.CO;q-bio.PE q-bio.PE https://arxiv.org/abs/2601.15219 False False 2601.15219 A height-based metaconcept for rooted tree balance and its implications for the $B_1$ index 2026-01-21 math.CO;q-bio.PE q-bio.PE https://arxiv.org/abs/2601.15219 False False 2601.13564 Multi-objective fluorescent molecule design with a data-physics dual-driven generative framework 2026-01-20 cs.AI;cs.LG;physics.chem-ph;q-bio.BM q-bio.BM https://arxiv.org/abs/2601.13564 False False 2601.13693 End-to-End Reverse Screening Identifies Protein Targets of Small Molecules Using HelixFold3 2026-01-20 cs.AI;q-bio.BM q-bio.BM https://arxiv.org/abs/2601.13693 False False 2601.13714 Cost-Effectiveness of Adult Hepatitis A Vaccination Strategies in Korea Under an Aging Susceptibility Profile 2026-01-20 math.OC;q-bio.PE q-bio.PE https://arxiv.org/abs/2601.13714 False False 2601.13730 Outbreak dynamics and population vulnerability in stochastic epidemic models on networks 2026-01-20 q-bio.PE q-bio.PE https://arxiv.org/abs/2601.13730 False False 2601.13866 Audio Outperforms Text for Visual Decoding 2026-01-20 q-bio.NC q-bio.NC https://arxiv.org/abs/2601.13866 False False 2601.13926 SCG With Your Phone: Diagnosis of Rhythmic Spectrum Disorders in Field Conditions 2026-01-20 cs.LG;eess.SP;q-bio.QM q-bio.QM https://arxiv.org/abs/2601.13926 False False 2601.13947 Nonlinear competition avoidance favors coexistence in microbial populations 2026-01-20 physics.bio-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2601.13947 False False 2601.13962 Optimal Calibration of the endpoint-corrected Hilbert Transform 2026-01-20 cs.SY;eess.SP;eess.SY;q-bio.NC;stat.ME q-bio.NC https://arxiv.org/abs/2601.13962 False False 2601.14077 MooneyMaker: A Python package to create ambiguous two-tone images 2026-01-20 cs.CV;q-bio.NC q-bio.NC https://arxiv.org/abs/2601.14077 False False 2601.14213 Rare species advantage in Antarctic Lakes 2026-01-20 q-bio.PE q-bio.PE https://arxiv.org/abs/2601.14213 False False 2601.14509 Cell proliferation maintains cell area polydispersity in the growing fruit fly wing epithelium 2026-01-20 physics.bio-ph;q-bio.CB q-bio.CB https://arxiv.org/abs/2601.14509 False False 2601.14514 """Just in Time"" World Modeling Supports Human Planning and Reasoning" 2026-01-20 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2601.14514 False False 2601.14536 engGNN: A Dual-Graph Neural Network for Omics-Based Disease Classification and Feature Selection 2026-01-20 cs.LG;q-bio.GN;stat.ML q-bio.GN https://arxiv.org/abs/2601.14536 False False 2601.15336 Learning Discrete Successor Transitions in Continuous Attractor Networks: Emergence, Limits, and Topological Constraints 2026-01-20 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2601.15336 False False 2601.15344 A Dual-Head Transformer-State-Space Architecture for Neurocircuit Mechanism Decomposition from fMRI 2026-01-20 q-bio.NC q-bio.NC https://arxiv.org/abs/2601.15344 False False 2601.15341 Latent Causal Diffusions for Single-Cell Perturbation Modeling 2026-01-20 cs.LG;q-bio.MN q-bio.MN https://arxiv.org/abs/2601.15341 False False 2601.15333 Empowering LLMs for Structure-Based Drug Design via Exploration-Augmented Latent Inference 2026-01-20 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2601.15333 False False 2602.00057 Explore Brain-Inspired Machine Intelligence for Connecting Dots on Graphs Through Holographic Blueprint of Oscillatory Synchronization 2026-01-20 cs.AI;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2602.00057 False False 2601.14183 Gradient-based optimization of exact stochastic kinetic models 2026-01-20 physics.comp-ph;physics.stat-mech;q-bio.QM q-bio.QM https://arxiv.org/abs/2601.14183 False False 2601.14205 Three-Dimensional Volumetric Reconstruction of Native Chilean Pollen via Lens-Free Digital In-line Holographic Microscopy 2026-01-20 physics.bio-ph;physics.optics;q-bio.QM q-bio.QM https://arxiv.org/abs/2601.14205 False False 2601.13962 Optimal Calibration of the Endpoint-corrected Hilbert Transform 2026-01-20 cs.SY;eess.SP;eess.SY;q-bio.NC;stat.ME q-bio.NC https://arxiv.org/abs/2601.13962 False False 2601.13962 Optimal Calibration of the Endpoint-corrected Hilbert Transform 2026-01-20 cs.SY;eess.SP;eess.SY;q-bio.NC;stat.ME q-bio.NC https://arxiv.org/abs/2601.13962 False False 2601.12637 Topology-Aware Multiscale Mixture of Experts for Efficient Molecular Property Prediction 2026-01-19 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2601.12637 False False 2601.12712 Multiscale Modelling of Birth-Death Processes 2026-01-19 q-bio.PE q-bio.PE https://arxiv.org/abs/2601.12712 False False 2601.12717 Energy flow controls the stability of multitrophic ecosystems with stratified nonreciprocity 2026-01-19 physics.dis-nn;physics.stat-mech;q-bio.PE q-bio.PE https://arxiv.org/abs/2601.12717 False False 2601.12801 Pollutant-induced changes in fish pigmentation and spatial patterns 2026-01-19 math.AP;physics.bio-ph;q-bio.QM q-bio.QM https://arxiv.org/abs/2601.12801 False False 2601.12837 Cognition spaces: natural, artificial, and hybrid 2026-01-19 cs.AI;cs.HC;cs.NE;q-bio.NC q-bio.NC https://arxiv.org/abs/2601.12837 False False 2601.12854 A generalized work theorem for stopped stochastic chemical reaction networks 2026-01-19 physics.stat-mech;q-bio.MN q-bio.MN https://arxiv.org/abs/2601.12854 False False 2601.12928 An efficient heuristic for geometric analysis of cell deformations 2026-01-19 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2601.12928 False False 2601.13010 Extracting useful information about reversible evolutionary processes from irreversible evolutionary accumulation models 2026-01-19 q-bio.PE;stat.ME q-bio.PE https://arxiv.org/abs/2601.13010 False False 2601.13170 Global stability of a Hebbian/anti-Hebbian network for principal subspace learning 2026-01-19 cs.NE;math.DS;q-bio.NC q-bio.NC https://arxiv.org/abs/2601.13170 False False 2601.13182 Polyphonic Intelligence: Constraint-Based Emergence, Pluralistic Inference, and Non-Dominating Integration 2026-01-19 q-bio.NC q-bio.NC https://arxiv.org/abs/2601.13182 False False 2601.13211 A tropical geometry for bounded biochemical state spaces 2026-01-19 q-bio.QM q-bio.QM https://arxiv.org/abs/2601.13211 False False 2601.13297 Multifaceted neural representation of words in naturalistic language 2026-01-19 q-bio.NC q-bio.NC https://arxiv.org/abs/2601.13297 False False 2601.13370 A First Step for Expansion X-Ray Microscopy: Achieving Contrast in Expanded Tissues Sufficient to Reveal Cell Bodies 2026-01-19 q-bio.NC;q-bio.QM q-bio.NC https://arxiv.org/abs/2601.13370 False False 2601.13442 Menopause averted a midlife energetic crisis with help from older children and parents: A simulation study 2026-01-19 q-bio.PE q-bio.PE https://arxiv.org/abs/2601.13442 False False 2601.14313 Investigating cerebral anomalies in preterm infants and associated risk factors with magnetic resonance imaging at term-equivalent age 2026-01-19 q-bio.NC q-bio.NC https://arxiv.org/abs/2601.14313 False False 2601.14314 Fed-ComBat: A Generalized Federated Framework for Batch Effect Harmonization in Collaborative Studies 2026-01-19 q-bio.QM q-bio.QM https://arxiv.org/abs/2601.14314 False False 2601.12805 SciHorizon-GENE: Benchmarking LLM for Life Sciences Inference from Gene Knowledge to Functional Understanding 2026-01-19 cs.AI;cs.CL;q-bio.GN q-bio.GN https://arxiv.org/abs/2601.12805 False False 2601.13407 A Joint Survival Modeling and Therapy Knowledge Graph Framework to Characterize Opioid Use Disorder Trajectories 2026-01-19 q-bio.QM q-bio.QM https://arxiv.org/abs/2601.13407 False False 2601.15326 ECGomics: An Open Platform for AI-ECG Digital Biomarker Discovery 2026-01-19 cs.AI;q-bio.QM q-bio.QM https://arxiv.org/abs/2601.15326 False False 2601.13349 Conservation priority mapping to prevent zoonotic spillovers 2026-01-19 econ.GN;q-bio.PE;q-fin.EC q-bio.PE https://arxiv.org/abs/2601.13349 False False 2601.13010 Extracting useful information about reversible evolutionary processes from irreversible evolutionary accumulation models 2026-01-19 q-bio.PE;stat.ME q-bio.PE https://arxiv.org/abs/2601.13010 False False 2601.12805 SciHorizon-GENE: Benchmarking LLM for Life Sciences Inference from Gene Knowledge to Functional Understanding 2026-01-19 cs.AI;cs.CL;q-bio.GN q-bio.GN https://arxiv.org/abs/2601.12805 False False 2601.12805 SciHorizon-GENE: Benchmarking LLM for Life Sciences Inference from Gene Knowledge to Functional Understanding 2026-01-19 cs.AI;cs.CL;q-bio.GN q-bio.GN https://arxiv.org/abs/2601.12805 False False 2601.12805 SciHorizon-GENE: Benchmarking LLM for Life Sciences Inference from Gene Knowledge to Functional Understanding 2026-01-19 cs.AI;cs.CL;q-bio.GN q-bio.GN https://arxiv.org/abs/2601.12805 False False 2601.12805 SciHorizon-GENE: Benchmarking LLM for Life Sciences Inference from Gene Knowledge to Functional Understanding 2026-01-19 cs.AI;cs.CL;q-bio.GN q-bio.GN https://arxiv.org/abs/2601.12805 False False 2601.13442 Menopause averted a midlife energetic crisis with help from older dependent children and parents: A simulation study 2026-01-19 q-bio.PE q-bio.PE https://arxiv.org/abs/2601.13442 False False 2601.13442 Menopause averted a midlife energetic crisis with help from older dependent children and parents: A simulation study 2026-01-19 q-bio.PE q-bio.PE https://arxiv.org/abs/2601.13442 False False 2601.13407 A Joint Survival Modeling and Therapy Knowledge Graph Framework to Characterize Opioid Use Disorder Trajectories 2026-01-19 q-bio.QM q-bio.QM https://arxiv.org/abs/2601.13407 False False 2601.13407 A Joint Survival Modeling and Therapy Knowledge Graph Framework to Characterize Opioid Use Disorder Trajectories 2026-01-19 q-bio.QM q-bio.QM https://arxiv.org/abs/2601.13407 False False 2601.12712 Multiscale Modelling of Birth-Death Processes 2026-01-19 q-bio.PE q-bio.PE https://arxiv.org/abs/2601.12712 False False 2601.12712 Multiscale Modelling of Birth-Death Processes 2026-01-19 q-bio.PE q-bio.PE https://arxiv.org/abs/2601.12712 False False 2601.12219 Persistent Sheaf Laplacian Analysis of Protein Stability and Solubility Changes upon Mutation 2026-01-18 cs.LG;math.SP;q-bio.QM q-bio.QM https://arxiv.org/abs/2601.12219 False False 2601.12258 Modeling Dynamic Computations in the Primate Ventral Visual Stream 2026-01-18 q-bio.NC q-bio.NC https://arxiv.org/abs/2601.12258 False False 2601.12381 Multimodal Spatial Omics: From Data Acquisition to Computational Integration 2026-01-18 q-bio.BM;q-bio.GN;q-bio.QM q-bio.BM https://arxiv.org/abs/2601.12381 False False 2601.12455 Identifying Therapeutic Targets for Triple-Negative Breast Cancer using a Novel Mathematical Model of the Tumor Microenvironment 2026-01-18 q-bio.QM q-bio.QM https://arxiv.org/abs/2601.12455 False False 2601.12577 Primate-like perceptual decision making emerges through deep recurrent reinforcement learning 2026-01-18 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2601.12577 False False 2601.12424 If Grid Cells are the Answer, What is the Question? A Review of Normative Grid Cell Theory 2026-01-18 q-bio.NC q-bio.NC https://arxiv.org/abs/2601.12424 False False 2601.12455 Identifying Therapeutic Targets for Triple-Negative Breast Cancer using a Novel Mathematical Model of the Tumor Microenvironment 2026-01-18 q-bio.QM q-bio.QM https://arxiv.org/abs/2601.12455 False False 2601.12455 Identifying Therapeutic Targets for Triple-Negative Breast Cancer using a Novel Mathematical Model of the Tumor Microenvironment 2026-01-18 q-bio.QM q-bio.QM https://arxiv.org/abs/2601.12455 False False 2601.11878 Accelerated MR Elastography Using Learned Neural Network Representation 2026-01-17 cs.CV;cs.LG;eess.SP;q-bio.QM q-bio.QM https://arxiv.org/abs/2601.11878 False False 2601.11941 Fluctuation Theorems from a Continuous-Time Markov Model of Information-Thermodynamic Capacity in Biochemical Signal Cascades 2026-01-17 q-bio.MN q-bio.MN https://arxiv.org/abs/2601.11941 False False 2601.12005 The challenge of scale in molecular adaptation: Local searches in astronomical genotype networks 2026-01-17 q-bio.PE q-bio.PE https://arxiv.org/abs/2601.12005 False False 2601.12053 A New Strategy for Artificial Intelligence: Training Foundation Models Directly on Human Brain Data 2026-01-17 cs.AI;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2601.12053 False False 2601.12054 Automated Place Preference Paradigm for Optogenetic Stimulation of the Pedunculopontine Nucleus Reveals Motor Arrest-Linked Preference Behavior 2026-01-17 q-bio.NC q-bio.NC https://arxiv.org/abs/2601.12054 False False 2601.12101 Chargaff's second parity rule and the kinetics of DNA replication 2026-01-17 q-bio.QM q-bio.QM https://arxiv.org/abs/2601.12101 False False 2601.12054 Automated Place Preference Paradigm for Optogenetic Stimulation of the Pedunculopontine Nucleus Reveals Motor Arrest-Linked Preference Behavior 2026-01-17 q-bio.NC q-bio.NC https://arxiv.org/abs/2601.12054 False False 2601.12054 Automated Place Preference Paradigm for Optogenetic Stimulation of the Pedunculopontine Nucleus Reveals Motor Arrest-Linked Preference Behavior 2026-01-17 q-bio.NC q-bio.NC https://arxiv.org/abs/2601.12054 False False 2601.11878 Accelerated MR Elastography Using Learned Neural Network Representation 2026-01-17 cs.CV;cs.LG;eess.SP;q-bio.QM q-bio.QM https://arxiv.org/abs/2601.11878 False False 2601.11878 Accelerated MR Elastography Using Learned Neural Network Representation 2026-01-17 cs.CV;cs.LG;eess.SP;q-bio.QM q-bio.QM https://arxiv.org/abs/2601.11878 False False 2601.10959 Depression Detection Based on Electroencephalography Using a Hybrid Deep Neural Network CNN-GRU and MRMR Feature Selection 2026-01-16 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2601.10959 False False 2601.10995 GP-DHT: A Dual-Head Transformer with Contras-tive Learning for Predicting Gene Regulatory Rela-tionships across Species from Single-Cell Data 2026-01-16 q-bio.GN q-bio.GN https://arxiv.org/abs/2601.10995 False False 2601.11108 Simple Models, Rich Representations: Visual Decoding from Primate Intracortical Neural Signals 2026-01-16 cs.CV;q-bio.NC q-bio.NC https://arxiv.org/abs/2601.11108 0.7599 0.7064 True 6 7.2 False 2601.11148 Mechanistic Learning for Survival Prediction in NSCLC Using Routine Blood Biomarkers and Tumor Kinetics 2026-01-16 q-bio.QM q-bio.QM https://arxiv.org/abs/2601.11148 False False 2601.11318 Building Digital Twins of Different Human Organs for Personalized Healthcare 2026-01-16 eess.IV;physics.med-ph;q-bio.TO q-bio.TO https://arxiv.org/abs/2601.11318 False False 2601.11450 Principles of Client Enrichment in Multicomponent Biomolecular Condensates 2026-01-16 physics.bio-ph;physics.soft;q-bio.BM q-bio.BM https://arxiv.org/abs/2601.11450 False False 2601.11505 MetaboNet: The Largest Publicly Available Consolidated Dataset for Type 1 Diabetes Management 2026-01-16 cs.AI;cs.LG;cs.SY;eess.SY;q-bio.QM q-bio.QM https://arxiv.org/abs/2601.11505 False False 2601.11668 Integrating Household Dynamics in Stochastic Epidemic Modeling: An SDE Approach to the SIR Framework 2026-01-16 q-bio.PE q-bio.PE https://arxiv.org/abs/2601.11668 False False 2601.11833 Karhunen-Loève Expansion-Based Residual Anomaly Map for Resource-Efficient Glioma MRI Segmentation 2026-01-16 cs.CV;cs.LG;eess.IV;q-bio.QM q-bio.QM https://arxiv.org/abs/2601.11833 False False 2601.15319 Large Language Models as Simulative Agents for Neurodivergent Adult Psychometric Profiles 2026-01-16 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2601.15319 False False 2601.15320 On Brain as a Mathematical Manifold: Neural Manifolds, Sheaf Semantics, and Leibnizian Harmony 2026-01-16 q-bio.NC q-bio.NC https://arxiv.org/abs/2601.15320 False False 2601.15321 Analysis of the Ventriloquism Aftereffect Using Network Theory Techniques 2026-01-16 cs.HC;q-bio.NC q-bio.NC https://arxiv.org/abs/2601.15321 False False 2601.11382 Effects of 2.45 GHz radiofrequency upon Leuconostoc mesenteroides Glucose-6-phosphate dehydrogenase enzymatic activity 2026-01-16 physics.bio-ph;q-bio.BM q-bio.BM https://arxiv.org/abs/2601.11382 False False 2601.10912 Graph Neural Network Reveals the Local Cortical Morphology of Brain Aging in Normal Cognition and Alzheimers Disease 2026-01-16 eess.IV;q-bio.NC;q-bio.QM q-bio.NC https://arxiv.org/abs/2601.10912 False False 2601.11013 De novo emergence of metabolically active protocells 2026-01-16 physics.AO;physics.bio-ph;physics.chem-ph;physics.soft;q-bio.BM q-bio.BM https://arxiv.org/abs/2601.11013 False False 2601.11018 KOCOBrain: Kuramoto-Guided Graph Network for Uncovering Structure-Function Coupling in Adolescent Prenatal Drug Exposure 2026-01-16 cs.CV;q-bio.NC q-bio.NC https://arxiv.org/abs/2601.11018 False False 2601.20869 Integrating Color Histogram Analysis and Convolutional Neural Network for Skin Lesion Classification 2026-01-16 cs.AI;eess.IV;q-bio.QM q-bio.QM https://arxiv.org/abs/2601.20869 False False 2601.11691 Explainable histomorphology-based survival prediction of glioblastoma, IDH-wildtype 2026-01-16 cs.LG;eess.IV;q-bio.QM q-bio.QM https://arxiv.org/abs/2601.11691 False False 2602.00019 AutoBinder Agent: An MCP-Based Agent for End-to-End Protein Binder Design 2026-01-16 cs.AI;q-bio.BM q-bio.BM https://arxiv.org/abs/2602.00019 False False 2601.11691 Explainable histomorphology-based survival prediction of glioblastoma, IDH-wildtype 2026-01-16 cs.LG;eess.IV;q-bio.QM q-bio.QM https://arxiv.org/abs/2601.11691 False False 2601.11505 MetaboNet: The Largest Publicly Available Consolidated Dataset for Type 1 Diabetes Management 2026-01-16 cs.AI;cs.LG;cs.SY;eess.SY;q-bio.QM q-bio.QM https://arxiv.org/abs/2601.11505 False False 2601.11505 MetaboNet: The Largest Publicly Available Consolidated Dataset for Type 1 Diabetes Management 2026-01-16 cs.AI;cs.LG;cs.SY;eess.SY;q-bio.QM q-bio.QM https://arxiv.org/abs/2601.11505 False False 2601.10912 Graph Neural Network Reveals the Cortical Morphology of Local Brain Aging in Normal Cognition and Alzheimer's Disease 2026-01-16 eess.IV;q-bio.NC;q-bio.QM q-bio.NC https://arxiv.org/abs/2601.10912 False False 2601.10912 Graph Neural Network Reveals the Cortical Morphology of Local Brain Aging in Normal Cognition and Alzheimer's Disease 2026-01-16 eess.IV;q-bio.NC;q-bio.QM q-bio.NC https://arxiv.org/abs/2601.10912 False False 2601.10032 Macroscopic dynamics of quadratic integrate-and-fire neurons subject to correlated noise 2026-01-15 physics.AO;physics.stat-mech;q-bio.NC q-bio.NC https://arxiv.org/abs/2601.10032 False False 2601.10070 Comparative Evaluation of Deep Learning-Based and WHO-Informed Approaches for Sperm Morphology Assessment 2026-01-15 cs.CV;cs.LG;eess.IV;q-bio.QM q-bio.QM https://arxiv.org/abs/2601.10070 False False 2601.10202 Robust and Generalizable Atrial Fibrillation Detection from ECG Using Time-Frequency Fusion and Supervised Contrastive Learning 2026-01-15 q-bio.QM q-bio.QM https://arxiv.org/abs/2601.10202 False False 2601.10250 Cell Behavior Video Classification Challenge, a benchmark for computer vision methods in time-lapse microscopy 2026-01-15 cs.CV;eess.IV;q-bio.QM q-bio.QM https://arxiv.org/abs/2601.10250 False False 2601.10276 How Intrinsic Motivation Underlies Embodied Open-Ended Behavior 2026-01-15 q-bio.NC q-bio.NC https://arxiv.org/abs/2601.10276 False False 2601.10364 Gene genealogies in diploid populations evolving according to sweepstakes reproduction 2026-01-15 math.PR;q-bio.PE q-bio.PE https://arxiv.org/abs/2601.10364 False False 2601.10405 A Predictive Model for Synergistic Oncolytic Virotherapy: Unveiling the Ping-Pong Mechanism and Optimal Timing of Combined Vesicular Stomatitis and Vaccinia Viruses 2026-01-15 math.DS;q-bio.QM q-bio.QM https://arxiv.org/abs/2601.10405 False False 2601.10464 MitoFREQ: A Novel Approach for Mitogenome Frequency Estimation from Top-level Haplogroups and Single Nucleotide Variants 2026-01-15 q-bio.GN;stat.AP q-bio.GN https://arxiv.org/abs/2601.10464 False False 2601.10515 Testing three models of cognitive stress effects: A psychopharmacological randomized controlled trial of acute stress and stress hormones across visual perception, response inhibition and cognitive flexibility 2026-01-15 q-bio.NC q-bio.NC https://arxiv.org/abs/2601.10515 False False 2601.10663 Sporadic Creutzfeldt Jakob disease presenting with cerebral atrophy following traumatic brain injury mimicking hydrocephalus a case report and literature review 2026-01-15 q-bio.NC q-bio.NC https://arxiv.org/abs/2601.10663 False False 2601.10847 The genetic and developmental enigma of rhizomes: crucial traits with limited understanding 2026-01-15 q-bio.PE q-bio.PE https://arxiv.org/abs/2601.10847 False False 2601.10221 A Unified Dynamical Field Theory of Learning, Inference, and Emergence 2026-01-15 q-bio.NC q-bio.NC https://arxiv.org/abs/2601.10221 False False 2601.10397 Reshaping Neural Representation via Associative, Presynaptic Short-Term Plasticity 2026-01-15 q-bio.NC q-bio.NC https://arxiv.org/abs/2601.10397 False False 2601.15314 Beyond the Einstein-Bohr Debate: Cognitive Complementarity and the Emergence of Quantum Intuition 2026-01-15 cs.AI;physics.quant-ph;q-bio.NC q-bio.NC https://arxiv.org/abs/2601.15314 False False 2601.11653 AI Agents Need Memory Control Over More Context 2026-01-15 cs.LG;cs.MA;q-bio.NC q-bio.NC https://arxiv.org/abs/2601.11653 False False 2601.10482 Convex Efficient Coding 2026-01-15 q-bio.NC q-bio.NC https://arxiv.org/abs/2601.10482 False False 2601.10397 Reshaping Neural Representation via Associative, Presynaptic Short-Term Plasticity 2026-01-15 q-bio.NC q-bio.NC https://arxiv.org/abs/2601.10397 False False 2601.10397 Reshaping Neural Representation via Associative, Presynaptic Short-Term Plasticity 2026-01-15 q-bio.NC q-bio.NC https://arxiv.org/abs/2601.10397 False False 2601.10464 MitoFREQ: A Novel Approach for Mitogenome Frequency Estimation from Top-level Haplogroups and Single Nucleotide Variants 2026-01-15 q-bio.GN;stat.AP q-bio.GN https://arxiv.org/abs/2601.10464 False False 2601.10464 MitoFREQ: A Novel Approach for Mitogenome Frequency Estimation from Top-level Haplogroups and Single Nucleotide Variants 2026-01-15 q-bio.GN;stat.AP q-bio.GN https://arxiv.org/abs/2601.10464 False False 2601.10221 Cognitive Field Theory of Learning, Inference, and Emergence 2026-01-15 q-bio.NC q-bio.NC https://arxiv.org/abs/2601.10221 False False 2601.10221 Cognitive Field Theory of Learning, Inference, and Emergence 2026-01-15 q-bio.NC q-bio.NC https://arxiv.org/abs/2601.10221 False False 2601.10221 Cognitive Field Theory of Learning, Inference, and Emergence 2026-01-15 q-bio.NC q-bio.NC https://arxiv.org/abs/2601.10221 False False 2601.10221 Cognitive Field Theory of Learning, Inference, and Emergence 2026-01-15 q-bio.NC q-bio.NC https://arxiv.org/abs/2601.10221 False False 2601.10221 Cognitive Field Theory of Learning, Inference, and Emergence 2026-01-15 q-bio.NC q-bio.NC https://arxiv.org/abs/2601.10221 False False 2601.10221 Cognitive Field Theory of Learning, Inference, and Emergence 2026-01-15 q-bio.NC q-bio.NC https://arxiv.org/abs/2601.10221 False False 2601.10221 Cognitive Field Theory of Learning, Inference, and Emergence 2026-01-15 q-bio.NC q-bio.NC https://arxiv.org/abs/2601.10221 False False 2601.10034 Minimal Decision Dynamics and Contextual Probability: A Quantum Tug-of-War Model 2026-01-15 cs.AI;physics.quant-ph;q-bio.NC q-bio.NC https://arxiv.org/abs/2601.10034 False False 2601.10034 Minimal Decision Dynamics and Contextual Probability: A Quantum Tug-of-War Model 2026-01-15 cs.AI;physics.quant-ph;q-bio.NC q-bio.NC https://arxiv.org/abs/2601.10034 False False 2601.10221 Cognitive Field Theory: Memory-Dressed Collective Dynamics of Intelligence 2026-01-15 q-bio.NC q-bio.NC https://arxiv.org/abs/2601.10221 False False 2601.10221 Cognitive Field Theory: Memory-Dressed Collective Dynamics of Intelligence 2026-01-15 q-bio.NC q-bio.NC https://arxiv.org/abs/2601.10221 False False 2601.10202 Robust and Generalizable Atrial Fibrillation Detection from ECG Using Time-Frequency Fusion and Supervised Contrastive Learning 2026-01-15 q-bio.QM q-bio.QM https://arxiv.org/abs/2601.10202 False False 2601.10202 Robust and Generalizable Atrial Fibrillation Detection from ECG Using Time-Frequency Fusion and Supervised Contrastive Learning 2026-01-15 q-bio.QM q-bio.QM https://arxiv.org/abs/2601.10202 False False 2601.10221 Cognitive Field Theory: Memory-Dressed Collective Dynamics of Intelligence 2026-01-15 q-bio.NC q-bio.NC https://arxiv.org/abs/2601.10221 False False 2601.10221 Cognitive Field Theory: Memory-Dressed Collective Dynamics of Intelligence 2026-01-15 q-bio.NC q-bio.NC https://arxiv.org/abs/2601.10221 False False 2601.09767 From the Hallmarks of Cancer to the Survival System: A Paradigmatic Reconstruction of Oncological Theory through the Existential Crisis-Driven Survival (ECDS) Framework 2026-01-14 q-bio.TO q-bio.TO https://arxiv.org/abs/2601.09767 False False 2601.09320 Mapping Connectomic Structure to Function(s) in Cerebellar-like Networks using Kernel Regression 2026-01-14 q-bio.NC q-bio.NC https://arxiv.org/abs/2601.09320 False False 2601.09537 Gene genealogies in haploid populations evolving according to sweepstakes reproduction 2026-01-14 math.PR;q-bio.PE q-bio.PE https://arxiv.org/abs/2601.09537 False False 2601.09634 Human Ancestries Simulation and Inference: a Review of Ancestral Recombination Graph Samplers 2026-01-14 q-bio.PE q-bio.PE https://arxiv.org/abs/2601.09634 False False 2601.09660 Constitutive parameter inference using physics-based data-driven modeling in full volume datasets of intact and torn rotator cuff tendons 2026-01-14 physics.bio-ph;q-bio.TO q-bio.TO https://arxiv.org/abs/2601.09660 False False 2601.09758 Detecting Batch Heterogeneity via Likelihood Clustering 2026-01-14 cs.LG;q-bio.GN;stat.ME;stat.ML q-bio.GN https://arxiv.org/abs/2601.09758 False False 2601.09813 An agent-based modelling approach to investigate the impact of gender on tuberculosis transmission in Uganda 2026-01-14 q-bio.PE q-bio.PE https://arxiv.org/abs/2601.09813 False False 2601.09816 The multi-allelic Moran process as a multi-zealot voter model: exact results and consequences for diversity thresholds 2026-01-14 physics.AO;q-bio.PE q-bio.PE https://arxiv.org/abs/2601.09816 False False 2601.09912 High-Density Multi-Depth Human Recordings Using 45 mm Long Neuropixels Probes 2026-01-14 q-bio.NC q-bio.NC https://arxiv.org/abs/2601.09912 False False 2601.15313 Attention Is Not Retention: The Orthogonality Constraint in Infinite-Context Architectures 2026-01-14 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2601.15313 False False 2601.09173 Geometric Stability: The Missing Axis of Representations 2026-01-14 cs.CL;cs.LG;q-bio.QM;stat.ML q-bio.QM https://arxiv.org/abs/2601.09173 False False 2601.11636 Qualitative analysis and numerical investigations of time-fractional Zika virus model arising in population dynamics 2026-01-14 cs.NA;math.DS;math.NA;q-bio.PE q-bio.PE https://arxiv.org/abs/2601.11636 False False 2601.09767 From the Hallmarks of Cancer to the Survival System: A Paradigmatic Reconstruction of Oncological Theory through the Existential Crisis-Driven Survival (ECDS) Framework 2026-01-14 q-bio.TO q-bio.TO https://arxiv.org/abs/2601.09767 False False 2601.09320 Mapping Connectomic Structure to Function(s) in Cerebellar-like Networks using Kernel Regression 2026-01-14 q-bio.NC q-bio.NC https://arxiv.org/abs/2601.09320 False False 2601.09634 Human Ancestries Simulation and Inference: a Review of Ancestral Recombination Graph-Based Approaches 2026-01-14 q-bio.PE q-bio.PE https://arxiv.org/abs/2601.09634 False False 2601.09634 Human Ancestries Simulation and Inference: a Review of Ancestral Recombination Graph-Based Approaches 2026-01-14 q-bio.PE q-bio.PE https://arxiv.org/abs/2601.09634 False False 2601.09173 Geometric Stability: The Missing Axis of Representations 2026-01-14 cs.CL;cs.LG;q-bio.QM;stat.ML q-bio.QM https://arxiv.org/abs/2601.09173 False False 2601.09660 Constitutive parameter inference using physics-based data-driven modeling in full volume datasets of intact and torn rotator cuff tendons 2026-01-14 physics.bio-ph;q-bio.TO q-bio.TO https://arxiv.org/abs/2601.09660 False False 2601.09660 Constitutive parameter inference using physics-based data-driven modeling in full volume datasets of intact and torn rotator cuff tendons 2026-01-14 physics.bio-ph;q-bio.TO q-bio.TO https://arxiv.org/abs/2601.09660 False False 2601.09634 Human Ancestries Simulation and Inference: a Review of Ancestral Recombination Graph-Based Approaches 2026-01-14 q-bio.PE q-bio.PE https://arxiv.org/abs/2601.09634 False False 2601.09634 Human Ancestries Simulation and Inference: a Review of Ancestral Recombination Graph-Based Approaches 2026-01-14 q-bio.PE q-bio.PE https://arxiv.org/abs/2601.09634 False False 2601.09634 Human Ancestries Simulation and Inference: a Review of Ancestral Recombination Graph-Based Approaches 2026-01-14 q-bio.PE q-bio.PE https://arxiv.org/abs/2601.09634 False False 2601.09634 Human Ancestries Simulation and Inference: a Review of Ancestral Recombination Graph-Based Approaches 2026-01-14 q-bio.PE q-bio.PE https://arxiv.org/abs/2601.09634 False False 2601.09173 Geometric Stability: The Missing Axis of Representations 2026-01-14 cs.CL;cs.LG;q-bio.QM;stat.ML q-bio.QM https://arxiv.org/abs/2601.09173 False False 2601.09173 Geometric Stability: The Missing Axis of Representations 2026-01-14 cs.CL;cs.LG;q-bio.QM;stat.ML q-bio.QM https://arxiv.org/abs/2601.09173 False False 2601.09537 Gene genealogies in haploid populations evolving according to sweepstakes reproduction 2026-01-14 math.PR;q-bio.PE q-bio.PE https://arxiv.org/abs/2601.09537 False False 2601.09537 Gene genealogies in haploid populations evolving according to sweepstakes reproduction 2026-01-14 math.PR;q-bio.PE q-bio.PE https://arxiv.org/abs/2601.09537 False False 2601.08147 Network Pharmacology Framework Characterizes Polypharmacological Properties of Dietary Flavonoids: Integration of Computational, Experimental, and Epidemiological Evidence 2026-01-13 q-bio.BM;q-bio.QM q-bio.BM https://arxiv.org/abs/2601.08147 False False 2601.08285 Training Under Attentional Competition Produces Persistent Biases in Visual Appearance 2026-01-13 q-bio.NC q-bio.NC https://arxiv.org/abs/2601.08285 False False 2601.08318 Disentangling History and Propagation Dependencies in Cross-Subject Knee Contact Stress Prediction Using a Shared MeshGraphNet Backbone 2026-01-13 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2601.08318 False False 2601.08370 Tara Polaris expeditions: Sustained decadal observations of the coupled Arctic system in rapid transition 2026-01-13 q-bio.PE q-bio.PE https://arxiv.org/abs/2601.08370 False False 2601.08478 A whole-brain model of amyloid beta accumulation and cerebral hypoperfusion in Alzheimer's disease 2026-01-13 cs.NA;math.NA;q-bio.NC q-bio.NC https://arxiv.org/abs/2601.08478 False False 2601.08538 Beta-coalescents when sample size is large 2026-01-13 math.PR;q-bio.PE q-bio.PE https://arxiv.org/abs/2601.08538 False False 2601.08685 Stable Filtering for Efficient Dimensionality Reduction of Streaming Manifold Data 2026-01-13 eess.SP;q-bio.NC;stat.AP;stat.ME q-bio.NC https://arxiv.org/abs/2601.08685 False False 2601.08798 Near-perfect photo-ID of the Hula painted frog with zero-shot deep local-feature matching 2026-01-13 cs.CV;q-bio.QM q-bio.QM https://arxiv.org/abs/2601.08798 False False 2601.08932 Simulations Predict Improved Valve Performance Without Direct Leaflet Intervention After Neonatal Truncus Arteriosus Repair 2026-01-13 q-bio.TO q-bio.TO https://arxiv.org/abs/2601.08932 False False 2601.08963 Breaking the Bottlenecks: Scalable Diffusion Models for 3D Molecular Generation 2026-01-13 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2601.08963 False False 2601.08975 Stability and robustness of a generalized pump-leak model for epithelial cell and lumen volume regulation 2026-01-13 math.DS;q-bio.CB q-bio.CB https://arxiv.org/abs/2601.08975 False False 2601.08996 Semiparametric estimation of GLMs with interval-censored covariates via an augmented Turnbull estimator 2026-01-13 q-bio.QM;stat.ME q-bio.QM https://arxiv.org/abs/2601.08996 False False 2601.08818 Gyral-Sulcal-Net: An Integrated Network Representation of Brain Folding Patterns 2026-01-13 q-bio.NC q-bio.NC https://arxiv.org/abs/2601.08818 False False 2601.08701 Automated Lesion Segmentation of Stroke MRI Using nnU-Net: A Comprehensive External Validation Across Acute and Chronic Lesions 2026-01-13 cs.CV;q-bio.QM q-bio.QM https://arxiv.org/abs/2601.08701 False False 2601.08266 An open-source computational framework for immersed fluid-structure interaction modeling using FEBio and MFEM 2026-01-13 physics.comp-ph;q-bio.QM q-bio.QM https://arxiv.org/abs/2601.08266 False False 2601.09011 Fisher's fundamental theorem and regression in causal analysis 2026-01-13 q-bio.PE;stat.ME q-bio.PE https://arxiv.org/abs/2601.09011 False False 2601.09011 Causal attribution by the chain rule: unifying natural selection, learning, economics, and other disciplines 2026-01-13 q-bio.PE;stat.ME q-bio.PE https://arxiv.org/abs/2601.09011 False False 2601.09011 Causal attribution by the chain rule: unifying natural selection, learning, economics, and other disciplines 2026-01-13 q-bio.PE;stat.ME q-bio.PE https://arxiv.org/abs/2601.09011 False False 2601.09011 Causal attribution by the chain rule: unifying natural selection, learning, economics, and other disciplines 2026-01-13 q-bio.PE;stat.ME q-bio.PE https://arxiv.org/abs/2601.09011 False False 2601.08478 A whole-brain model of amyloid beta accumulation and cerebral hypoperfusion in Alzheimer's disease 2026-01-13 cs.NA;math.NA;q-bio.NC q-bio.NC https://arxiv.org/abs/2601.08478 False False 2601.08478 A whole-brain model of amyloid beta accumulation and cerebral hypoperfusion in Alzheimer's disease 2026-01-13 cs.NA;math.NA;q-bio.NC q-bio.NC https://arxiv.org/abs/2601.08478 False False 2601.08932 Simulations Predict Improved Valve Performance Without Direct Leaflet Intervention After Neonatal Truncus Arteriosus Repair 2026-01-13 q-bio.TO q-bio.TO https://arxiv.org/abs/2601.08932 False False 2601.08932 Simulations Predict Improved Valve Performance Without Direct Leaflet Intervention After Neonatal Truncus Arteriosus Repair 2026-01-13 q-bio.TO q-bio.TO https://arxiv.org/abs/2601.08932 False False 2601.08266 An open-source computational framework for immersed fluid-structure interaction modeling using FEBio and MFEM 2026-01-13 physics.comp-ph;q-bio.QM q-bio.QM https://arxiv.org/abs/2601.08266 False False 2601.08266 An open-source computational framework for immersed fluid-structure interaction modeling using FEBio and MFEM 2026-01-13 physics.comp-ph;q-bio.QM q-bio.QM https://arxiv.org/abs/2601.08266 False False 2601.07215 Neuronal Spike Trains as Functional-Analytic Distributions: Representation, Analysis, and Significance 2026-01-12 math.FA;q-bio.NC q-bio.NC https://arxiv.org/abs/2601.07215 False False 2601.07261 Pseudodata-guided Invariant Representation Learning Boosts the Out-of-Distribution Generalization in Enzymatic Kinetic Parameter Prediction 2026-01-12 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2601.07261 False False 2601.07403 Modeling and analysis of a novel two-strain dengue epidemics model considering secondary infections with increased mortality 2026-01-12 math.DS;q-bio.PE q-bio.PE https://arxiv.org/abs/2601.07403 False False 2601.07415 PLANET v2.0: A comprehensive Protein-Ligand Affinity Prediction Model Based on Mixture Density Network 2026-01-12 cs.LG;q-bio.MN q-bio.MN https://arxiv.org/abs/2601.07415 False False 2601.07546 Estimators for Substitution Rates in Genomes from Read Data 2026-01-12 cs.IT;math.IT;q-bio.GN q-bio.GN https://arxiv.org/abs/2601.07546 False False 2601.07591 Charting the velocity of brain growth and development 2026-01-12 q-bio.NC;q-bio.QM q-bio.NC https://arxiv.org/abs/2601.07591 False False 2601.07691 A Framework for Feature Discovery in Intracranial Pressure Monitoring Data Using Neural Network Attention 2026-01-12 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2601.07691 False False 2601.07826 Histopathology-centered Computational Evolution of Spatial Omics: Integration, Mapping, and Foundation Models 2026-01-12 q-bio.GN q-bio.GN https://arxiv.org/abs/2601.07826 False False 2601.07830 Optimal Learning Rate Schedule for Balancing Effort and Performance 2026-01-12 cs.LG;cs.NE;q-bio.NC q-bio.NC https://arxiv.org/abs/2601.07830 False False 2601.08056 The embodied brain: Bridging the brain, body, and behavior with neuromechanical digital twins 2026-01-12 cs.RO;q-bio.NC q-bio.NC https://arxiv.org/abs/2601.08056 False False 2601.08062 Combinatorial comparison of general galled trees, time-consistent galled trees, and simplex time-consistent galled trees 2026-01-12 math.CO;q-bio.PE q-bio.PE https://arxiv.org/abs/2601.08062 False False 2601.09747 Topological Percolation in Urban Dengue Transmission: A Multi-Scale Analysis of Spatial Connectivity 2026-01-12 math.GT;q-bio.PE;stat.AP q-bio.PE https://arxiv.org/abs/2601.09747 False False 2601.07215 Neuronal Spike Trains as Functional-Analytic Distributions: Representation, Analysis, and Significance 2026-01-12 math.FA;q-bio.NC q-bio.NC https://arxiv.org/abs/2601.07215 False False 2601.08056 The embodied brain: Bridging the brain, body, and behavior with neuromechanical digital twins 2026-01-12 cs.RO;q-bio.NC q-bio.NC https://arxiv.org/abs/2601.08056 False False 2601.08056 The embodied brain: Bridging the brain, body, and behavior with neuromechanical digital twins 2026-01-12 cs.RO;q-bio.NC q-bio.NC https://arxiv.org/abs/2601.08056 False False 2601.07215 Neuronal Spike Trains as Functional-Analytic Distributions: Representation, Analysis, and Significance 2026-01-12 math.FA;q-bio.NC q-bio.NC https://arxiv.org/abs/2601.07215 False False 2601.07215 Neuronal Spike Trains as Functional-Analytic Distributions: Representation, Analysis, and Significance 2026-01-12 math.FA;q-bio.NC q-bio.NC https://arxiv.org/abs/2601.07215 False False 2601.08056 The embodied brain: Bridging the brain, body, and behavior with biorealistic neuromechanical models 2026-01-12 cs.RO;q-bio.NC q-bio.NC https://arxiv.org/abs/2601.08056 False False 2601.08056 The embodied brain: Bridging the brain, body, and behavior with biorealistic neuromechanical models 2026-01-12 cs.RO;q-bio.NC q-bio.NC https://arxiv.org/abs/2601.08056 False False 2601.08056 The embodied brain: Bridging the brain, body, and behavior with biorealistic neuromechanical models 2026-01-12 cs.RO;q-bio.NC q-bio.NC https://arxiv.org/abs/2601.08056 False False 2601.08056 The embodied brain: Bridging the brain, body, and behavior with biorealistic neuromechanical models 2026-01-12 cs.RO;q-bio.NC q-bio.NC https://arxiv.org/abs/2601.08056 False False 2601.06991 Continuous Energy Landscape Model for Analyzing Brain State Transitions 2026-01-11 eess.SP;q-bio.NC q-bio.NC https://arxiv.org/abs/2601.06991 False False 2601.07024 Largest connected component in duplication-divergence growing graphs with symmetric coupled divergence 2026-01-11 physics.AO;physics.soc-ph;physics.stat-mech;q-bio.MN q-bio.MN https://arxiv.org/abs/2601.07024 False False 2601.06360 Computational Mapping of Reactive Stroma in Prostate Cancer Yields Interpretable, Prognostic Biomarkers 2026-01-10 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2601.06360 False False 2601.06381 Hierarchical Pooling and Explainability in Graph Neural Networks for Tumor and Tissue-of-Origin Classification Using RNA-seq Data 2026-01-10 cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2601.06381 False False 2601.06531 Learning Principles for Overcoming Non-ideal Factors in Brain 2026-01-10 q-bio.NC q-bio.NC https://arxiv.org/abs/2601.06531 False False 2601.06712 In-context learning emerges in chemical reaction networks without attention 2026-01-10 physics.dis-nn;physics.stat-mech;q-bio.MN q-bio.MN https://arxiv.org/abs/2601.06712 False False 2601.07863 From local defects to shear-organized biofilms in tonsillar crypts via computational simulations 2026-01-10 q-bio.QM q-bio.QM https://arxiv.org/abs/2601.07863 False False 2601.07871 Imaging-anchored Multiomics in Cardiovascular Disease: Integrating Cardiac Imaging, Bulk, Single-cell, and Spatial Transcriptomics 2026-01-10 cs.AI;cs.CV;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2601.07871 False False 2601.05531 DNATokenizer: A GPU-First Byte-to-Identifier Tokenizer for High-Throughput DNA Language Models 2026-01-09 cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2601.05531 False False 2601.05648 Open World Knowledge Aided Single-Cell Foundation Model with Robust Cross-Modal Cell-Language Pre-training 2026-01-09 cs.AI;cs.CL;cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2601.05648 False False 2601.05792 Tensor-DTI: Enhancing Biomolecular Interaction Prediction with Contrastive Embedding Learning 2026-01-09 cs.AI;cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2601.05792 False False 2601.05842 A latent factor approach to hyperspectral time series data for multivariate genomic prediction of grain yield in wheat 2026-01-09 q-bio.QM;stat.AP;stat.ME q-bio.QM https://arxiv.org/abs/2601.05842 False False 2601.05893 An outlook on extracellular waveforms produced by the three neuronal compartments 2026-01-09 q-bio.NC q-bio.NC https://arxiv.org/abs/2601.05893 False False 2601.05921 Evaluating infectious disease forecasts in a cost-loss situation 2026-01-09 q-bio.QM q-bio.QM https://arxiv.org/abs/2601.05921 False False 2601.05923 Cedalion Tutorial: A Python-based framework for comprehensive analysis of multimodal fNIRS & DOT from the lab to the everyday world 2026-01-09 cs.AI;cs.LG;eess.IV;eess.SP;q-bio.QM q-bio.QM https://arxiv.org/abs/2601.05923 False False 2601.06257 Gamma2Patterns: Deep Cognitive Attention Region Identification and Gamma-Alpha Pattern Analysis 2026-01-09 cs.AI;cs.CV;q-bio.NC q-bio.NC https://arxiv.org/abs/2601.06257 False False 2601.06354 Designing a Resilient Allee-Ornstein-Uhlenbeck model 2026-01-09 math.OC;q-bio.PE q-bio.PE https://arxiv.org/abs/2601.06354 False False 2601.11614 Multi-modal MRI-Based Alzheimer's Disease Diagnosis with Transformer-based Image Synthesis and Transfer Learning 2026-01-09 cs.CV;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2601.11614 False False 2601.14273 New water oxidation mechanism in Photosystem II resolves major experimental controversies 2026-01-09 physics.chem-ph;q-bio.BM q-bio.BM https://arxiv.org/abs/2601.14273 False False 2601.06272 Crossing the Functional Desert: Cascade-Driven Assembly and Feasibility Transitions in Early Life 2026-01-09 physics.AO;physics.bio-ph;physics.soc-ph;q-bio.MN;q-bio.PE q-bio.MN https://arxiv.org/abs/2601.06272 False False 2601.05605 AntibodyDesignBFN: High-Fidelity Fixed-Backbone Antibody Design via Discrete Bayesian Flow Networks 2026-01-09 q-bio.QM q-bio.QM https://arxiv.org/abs/2601.05605 False False 2601.04536 Identifying expanding TCR clonotypes with a longitudinal Bayesian mixture model and their associations with cancer patient prognosis, metastasis-directed therapy, and VJ gene enrichment 2026-01-08 q-bio.QM;stat.ME q-bio.QM https://arxiv.org/abs/2601.04536 False False 2601.04874 Structural-dynamic behavior of histamine in solution: the role of water models 2026-01-08 q-bio.BM q-bio.BM https://arxiv.org/abs/2601.04874 False False 2601.04909 Effects of T-type and L-type calcium currents on synchronized activity patterns in a model subthalamo-pallidal network 2026-01-08 q-bio.NC q-bio.NC https://arxiv.org/abs/2601.04909 False False 2601.04926 Entrainment of the suprachiasmatic nucleus network by a light-dark cycle 2026-01-08 physics.AO;q-bio.QM q-bio.QM https://arxiv.org/abs/2601.04926 False False 2601.05019 Hán Dān Xué Bù (Mimicry) or Qīng Chū Yú Lán (Mastery)? A Cognitive Perspective on Reasoning Distillation in Large Language Models 2026-01-08 cs.AI;cs.CL;q-bio.NC q-bio.NC https://arxiv.org/abs/2601.05019 False False 2601.05021 Geometric developmental principles for the emergence of brain-like weighted and directed neuronal networks 2026-01-08 physics.bio-ph;q-bio.NC q-bio.NC https://arxiv.org/abs/2601.05021 False False 2601.05193 Cell size control in bacteria is modulated through extrinsic noise, single-cell- and population-growth 2026-01-08 physics.stat-mech;q-bio.CB;q-bio.PE q-bio.CB https://arxiv.org/abs/2601.05193 False False 2601.05220 Mechanics of axis formation in $\textit{Hydra}$ 2026-01-08 physics.bio-ph;physics.soft;q-bio.TO q-bio.TO https://arxiv.org/abs/2601.05220 False False 2601.05222 Oscillatory Regimes in a Game-Theoretic Model for Mosquito Population Dynamics under Breeding Site Control 2026-01-08 math.DS;q-bio.PE q-bio.PE https://arxiv.org/abs/2601.05222 False False 2601.05356 PRISM: Protocol Refinement through Intelligent Simulation Modeling 2026-01-08 cs.AI;cs.MA;cs.RO;q-bio.QM q-bio.QM https://arxiv.org/abs/2601.05356 False False 2601.05367 The rights and wrongs of rescaling in population genetics simulations 2026-01-08 q-bio.PE q-bio.PE https://arxiv.org/abs/2601.05367 False False 2601.06214 Dynamics-inspired Structure Hallucination for Protein-protein Interaction Modeling 2026-01-08 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2601.06214 False False 2601.05301 Is E. coli good at chemotaxis? 2026-01-08 q-bio.CB q-bio.CB https://arxiv.org/abs/2601.05301 False False 2601.09737 Absorption and fixation times for evolutionary processes on graphs 2026-01-08 math.MP;math.PR;physics.math-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2601.09737 False False 2601.09738 From Ecological Connectivity to Outbreak Risk: A Heterogeneous Graph Network for Epidemiological Reasoning under Sparse Spatiotemporal Data 2026-01-08 cs.SI;q-bio.PE q-bio.PE https://arxiv.org/abs/2601.09738 False False 2601.05367 The rights and wrongs of rescaling in population genetics simulations 2026-01-08 q-bio.PE q-bio.PE https://arxiv.org/abs/2601.05367 False False 2601.05367 The rights and wrongs of rescaling in population genetics simulations 2026-01-08 q-bio.PE q-bio.PE https://arxiv.org/abs/2601.05367 False False 2601.05019 Hán Dān Xué Bù (Mimicry) or Qīng Chū Yú Lán (Mastery)? A Cognitive Perspective on Reasoning Distillation in Large Language Models 2026-01-08 cs.AI;cs.CL;q-bio.NC q-bio.NC https://arxiv.org/abs/2601.05019 False False 2601.05019 Hán Dān Xué Bù (Mimicry) or Qīng Chū Yú Lán (Mastery)? A Cognitive Perspective on Reasoning Distillation in Large Language Models 2026-01-08 cs.AI;cs.CL;q-bio.NC q-bio.NC https://arxiv.org/abs/2601.05019 False False 2601.05367 The rights and wrongs of rescaling in population genetics simulations 2026-01-08 q-bio.PE q-bio.PE https://arxiv.org/abs/2601.05367 False False 2601.05367 The rights and wrongs of rescaling in population genetics simulations 2026-01-08 q-bio.PE q-bio.PE https://arxiv.org/abs/2601.05367 False False 2601.03478 Emergent togetherness in collaborative dance improvisation: neural and motor synchronization reveal a coupling-decoupling paradox 2026-01-07 physics.AO;q-bio.NC q-bio.NC https://arxiv.org/abs/2601.03478 False False 2601.03498 A Quantifiable Information-Processing Hierarchy Provides a Necessary Condition for Detecting Agency 2026-01-07 cs.IT;math.IT;physics.data-an;q-bio.NC;stat.ML q-bio.NC https://arxiv.org/abs/2601.03498 False False 2601.03599 The Feller diffusion as the limit of a coalescent point process 2026-01-07 math.PR;q-bio.PE q-bio.PE https://arxiv.org/abs/2601.03599 False False 2601.03619 Evolution of Plastic Dispersal in Stable Environment: Local Information of Fitness Consequence 2026-01-07 q-bio.PE q-bio.PE https://arxiv.org/abs/2601.03619 False False 2601.03677 Roadmap for Condensates in Cell Biology 2026-01-07 physics.bio-ph;physics.soft;q-bio.BM;q-bio.SC q-bio.BM https://arxiv.org/abs/2601.03677 False False 2601.03681 Integrated strong reciprocity enables productive punishment and protective defection 2026-01-07 cs.CY;physics.AO;physics.soc-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2601.03681 False False 2601.03704 Investigating Knowledge Distillation Through Neural Networks for Protein Binding Affinity Prediction 2026-01-07 cs.AI;cs.LG;q-bio.BM;q-bio.MN;q-bio.QM q-bio.BM https://arxiv.org/abs/2601.03704 False False 2601.03796 Data-driven inference of brain dynamical states from the r-spectrum of correlation matrices 2026-01-07 q-bio.NC q-bio.NC https://arxiv.org/abs/2601.03796 False False 2601.03877 Minimal branching and fusion morphogenesis approaches biological multi-objective optimality 2026-01-07 physics.AO;physics.soc-ph;q-bio.QM q-bio.QM https://arxiv.org/abs/2601.03877 False False 2601.03930 Bayes-PD: Exploring a Sequence to Binding Bayesian Neural Network model trained on Phage Display data 2026-01-07 cs.AI;cs.LG;q-bio.PE q-bio.PE https://arxiv.org/abs/2601.03930 False False 2601.04016 Restoring information in aged gene regulatory networks by single knock-ins 2026-01-07 physics.bio-ph;q-bio.MN q-bio.MN https://arxiv.org/abs/2601.04016 False False 2601.04111 Stigmergic optimal transport 2026-01-07 cs.SY;eess.SY;physics.AO;q-bio.NC q-bio.NC https://arxiv.org/abs/2601.04111 False False 2601.04122 Tool Choice Matters: Evaluating edgeR vs. DESeq2 for Sensitivity, Robustness, and Cross-Study Performance 2026-01-07 q-bio.GN q-bio.GN https://arxiv.org/abs/2601.04122 False False 2601.03563 A disease-spread model on hypergraphs with distinct droplet and aerosol transmission modes 2026-01-07 math.DS;physics.AO;physics.soc-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2601.03563 False False 2601.04269 Systems Explaining Systems: A Framework for Intelligence and Consciousness 2026-01-07 cs.AI;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2601.04269 False False 2601.04299 Transformer-Based Multi-Modal Temporal Embeddings for Explainable Metabolic Phenotyping in Type 1 Diabetes 2026-01-07 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2601.04299 False False 2601.04325 When evolution realizes large deviations of fitness: from speciation to dynamical phase transitions 2026-01-07 physics.stat-mech;q-bio.PE q-bio.PE https://arxiv.org/abs/2601.04325 False False 2601.04335 Thermodynamic Constraints Drive Hierarchical Preemption in Cellular Decision-Making: A Hybrid Petri Net Framework with Application to Bacillus subtilis Sporulation 2026-01-07 q-bio.CB;q-bio.GN;q-bio.MN;q-bio.SC q-bio.CB https://arxiv.org/abs/2601.04335 False False 2601.04362 Phasor Agents: Oscillatory Graphs with Three-Factor Plasticity and Sleep-Staged Learning 2026-01-07 cs.LG;cs.NE;q-bio.NC q-bio.NC https://arxiv.org/abs/2601.04362 False False 2601.04380 Past Psychedelic Use Predicts Divergent Thinking 2026-01-07 q-bio.NC q-bio.NC https://arxiv.org/abs/2601.04380 False False 2601.04434 Reconstructing MSM Sexual Networks to Guide PrEP Distribution Strategies for HIV Prevention 2026-01-07 physics.soc-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2601.04434 False False 2601.05284 Irreversible behavior drives neural flows in the hippocampus 2026-01-07 physics.bio-ph;q-bio.NC q-bio.NC https://arxiv.org/abs/2601.05284 False False 2601.04375 Biomechanically Informed Image Registration for Patient-Specific Aortic Valve Strain Analysis 2026-01-07 physics.app-ph;q-bio.QM q-bio.QM https://arxiv.org/abs/2601.04375 False False 2601.04434 Reconstructing MSM Sexual Networks to Guide PrEP Distribution Strategies for HIV Prevention 2026-01-07 physics.soc-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2601.04434 False False 2601.04122 Tool Choice Matters: Evaluating edgeR vs. DESeq2 for Sensitivity, Robustness, and Cross-Study Performance 2026-01-07 q-bio.GN q-bio.GN https://arxiv.org/abs/2601.04122 False False 2601.04122 Tool Choice Matters: Evaluating edgeR vs. DESeq2 for Sensitivity, Robustness, and Cross-Study Performance 2026-01-07 q-bio.GN q-bio.GN https://arxiv.org/abs/2601.04122 False False 2601.03599 The Feller diffusion as the limit of a coalescent point process 2026-01-07 math.PR;q-bio.PE q-bio.PE https://arxiv.org/abs/2601.03599 False False 2601.03599 The Feller diffusion as the limit of a coalescent point process 2026-01-07 math.PR;q-bio.PE q-bio.PE https://arxiv.org/abs/2601.03599 False False 2601.03478 Emergent togetherness in collaborative dance improvisation: neural and motor synchronization reveal a coupling-decoupling paradox 2026-01-07 physics.AO;q-bio.NC q-bio.NC https://arxiv.org/abs/2601.03478 False False 2601.03478 Emergent togetherness in collaborative dance improvisation: neural and motor synchronization reveal a coupling-decoupling paradox 2026-01-07 physics.AO;q-bio.NC q-bio.NC https://arxiv.org/abs/2601.03478 False False 2601.04122 Tool Choice Matters: Evaluating edgeR vs. DESeq2 for Sensitivity, Robustness, and Cross-Study Performance 2026-01-07 q-bio.GN q-bio.GN https://arxiv.org/abs/2601.04122 False False 2601.04122 Tool Choice Matters: Evaluating edgeR vs. DESeq2 for Sensitivity, Robustness, and Cross-Study Performance 2026-01-07 q-bio.GN q-bio.GN https://arxiv.org/abs/2601.04122 False False 2601.02618 Hierarchical temporal receptive windows and zero-shot timescale generalization in biologically constrained scale-invariant deep networks 2026-01-06 cs.AI;cs.CL;cs.LG;cs.NE;q-bio.NC q-bio.NC https://arxiv.org/abs/2601.02618 False False 2601.02636 Credit Assignment via Neural Manifold Noise Correlation 2026-01-06 cs.AI;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2601.02636 False False 2601.02787 Simple chemical systems with chaos 2026-01-06 physics.CD;q-bio.MN q-bio.MN https://arxiv.org/abs/2601.02787 False False 2601.03117 Transformers self-organize like newborn visual systems when trained in prenatal worlds 2026-01-06 cs.AI;cs.CV;q-bio.NC q-bio.NC https://arxiv.org/abs/2601.03117 False False 2601.03299 Progressive Bayesian Confidence Architectures for Cold-Start Personal Health Analytics: Formalizing Early Insight Through Posterior Contraction and Risk-Aware Interpretation 2026-01-06 math.ST;q-bio.QM;stat.ME;stat.TH q-bio.QM https://arxiv.org/abs/2601.03299 False False 2601.03308 A Comprehensive Database of Leaf Temperature, Water, and CO 2 Fluxes in Young Oil Palm Plants Across Diverse Climate Scenarios 2026-01-06 q-bio.QM q-bio.QM https://arxiv.org/abs/2601.03308 False False 2601.02885 A Mathematical Formalization of Self-Determining Agency 2026-01-06 cs.SY;eess.SY;q-bio.NC q-bio.NC https://arxiv.org/abs/2601.02885 False False 2601.03019 DNACHUNKER: Learnable Tokenization for DNA Language Models 2026-01-06 cs.CL;q-bio.GN q-bio.GN https://arxiv.org/abs/2601.03019 False False 2601.03307 Understanding the temperature response of biological systems: Part II -- Network-level mechanisms and emergent dynamics 2026-01-06 physics.AO;physics.bio-ph;physics.soft;physics.stat-mech;q-bio.MN q-bio.MN https://arxiv.org/abs/2601.03307 False False 2601.03307 Understanding the temperature response of biological systems: Part II -- Network-level mechanisms and emergent dynamics 2026-01-06 physics.AO;physics.bio-ph;physics.soft;physics.stat-mech;q-bio.MN q-bio.MN https://arxiv.org/abs/2601.03307 False False 2601.03019 DNACHUNKER: Learnable Tokenization for DNA Language Models 2026-01-06 cs.CL;q-bio.GN q-bio.GN https://arxiv.org/abs/2601.03019 False False 2601.03019 DNACHUNKER: Learnable Tokenization for DNA Language Models 2026-01-06 cs.CL;q-bio.GN q-bio.GN https://arxiv.org/abs/2601.03019 False False 2601.01728 An AI-guided mechanotyping instrument for fully automated oocyte quality assessment 2026-01-05 physics.bio-ph;q-bio.CB q-bio.CB https://arxiv.org/abs/2601.01728 False False 2601.01782 Insular intracranial activity identifies multiple facial expressions via diverse, intermixed temporal patterns at the single-contact level 2026-01-05 q-bio.NC q-bio.NC https://arxiv.org/abs/2601.01782 False False 2601.01875 Toward Auditable Neuro-Symbolic Reasoning in Pathology: SQL as an Explicit Trace of Evidence 2026-01-05 cs.AI;q-bio.QM q-bio.QM https://arxiv.org/abs/2601.01875 False False 2601.01996 Oscillatory evolutionarily stable state and limit cycle in replicator dynamics 2026-01-05 econ.TH;physics.AO;q-bio.PE q-bio.PE https://arxiv.org/abs/2601.01996 False False 2601.02010 A neural network for modeling human concept formation, understanding and communication 2026-01-05 cs.AI;cs.CL;q-bio.NC q-bio.NC https://arxiv.org/abs/2601.02010 False False 2601.02138 Edge-aware GAT-based protein binding site prediction 2026-01-05 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2601.02138 False False 2601.02143 Responses of the Neurobiological Craving Signature to smoking versus alternative social rewards predict craving and monthly smoking in adolescents 2026-01-05 q-bio.NC q-bio.NC https://arxiv.org/abs/2601.02143 False False 2601.02265 Predicting Early and Complete Drug Release from Long-Acting Injectables Using Explainable Machine Learning 2026-01-05 cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2601.02265 False False 2601.02308 Mapping the landscape of mathematical models for antimicrobial resistance: a scoping review 2026-01-05 q-bio.PE q-bio.PE https://arxiv.org/abs/2601.02308 False False 2601.02552 Instant cost and delayed reward. Demographic eco-evolutionary game dynamics under the impact of the delay resulting from the offspring maturation time 2026-01-05 physics.CD;q-bio.PE q-bio.PE https://arxiv.org/abs/2601.02552 False False 2601.03295 MetagenBERT: a Transformer-based Architecture using Foundational genomic Large Language Models for novel Metagenome Representation 2026-01-05 cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2601.03295 False False 2601.01850 Allostery Beyond Amplification: Temporal Regulation of Signaling Information 2026-01-05 math.DS;physics.bio-ph;physics.chem-ph;q-bio.MN q-bio.MN https://arxiv.org/abs/2601.01850 False False 2601.01740 Fold-switching proteins push the boundaries of conformational ensemble prediction 2026-01-05 q-bio.BM q-bio.BM https://arxiv.org/abs/2601.01740 False False 2601.06134 DeeperBrain: A Neuro-Grounded EEG Foundation Model Towards Universal BCI 2026-01-05 cs.LG;eess.SP;q-bio.NC q-bio.NC https://arxiv.org/abs/2601.06134 False False 2601.02063 How much neuroscience does a neuroscientist need to know? 2026-01-05 q-bio.NC q-bio.NC https://arxiv.org/abs/2601.02063 False False 2601.08855 Evolutionary tuning of TAM receptor-ligand interfaces highlights electrostatic features associated with regenerative phagocytic signaling 2026-01-05 physics.bio-ph;q-bio.NC q-bio.NC https://arxiv.org/abs/2601.08855 False False 2601.02530 Multi-scale Graph Autoregressive Modeling: Molecular Property Prediction via Next Token Prediction 2026-01-05 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2601.02530 False False 2601.02606 gPC-based robustness analysis of neural systems through probabilistic recurrence metrics 2026-01-05 q-bio.NC q-bio.NC https://arxiv.org/abs/2601.02606 False False 2601.02446 Apparent Selection Pressure for Dynamic Range and Channel Capacity in Bacterial Chemotactic Sensors 2026-01-05 q-bio.QM q-bio.QM https://arxiv.org/abs/2601.02446 False False 2601.06134 DeeperBrain: A Neuro-Grounded EEG Foundation Model Towards Universal BCI 2026-01-05 cs.LG;eess.SP;q-bio.NC q-bio.NC https://arxiv.org/abs/2601.06134 False False 2601.02446 An Investigation of the Channel Capacity of Bacterial Chemotactic Sensors for Low Chemoattractant Concentrations 2026-01-05 q-bio.QM q-bio.QM https://arxiv.org/abs/2601.02446 False False 2601.02446 An Investigation of the Channel Capacity of Bacterial Chemotactic Sensors for Low Chemoattractant Concentrations 2026-01-05 q-bio.QM q-bio.QM https://arxiv.org/abs/2601.02446 False False 2601.01315 Quantifying Local Strain Field and Deformation in Active Contraction of Bladder Using a Pretrained Transformer Model: A Speckle-Free Approach 2026-01-04 cs.AI;cs.CV;q-bio.TO q-bio.TO https://arxiv.org/abs/2601.01315 False False 2601.01337 HyperNetWalk: A Unified Framework for Personalized and Population-Level Cancer Driver Gene Identification via Multi-Network Hypergraph Diffusion 2026-01-04 q-bio.MN;q-bio.QM q-bio.MN https://arxiv.org/abs/2601.01337 False False 2601.01358 A New Framework for Explainable Rare Cell Identification in Single-Cell Transcriptomics Data 2026-01-04 cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2601.01358 False False 2601.01424 Unveiling the Heart-Brain Connection: An Analysis of ECG in Cognitive Performance 2026-01-04 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2601.01424 False False 2601.01549 Dependence Structure and Epidemic Outcomes in Heterogeneous SIR Models 2026-01-04 q-bio.PE q-bio.PE https://arxiv.org/abs/2601.01549 False False 2601.01599 From Theory of Mind to Theory of Environment: Counterfactual Simulation of Latent Environmental Dynamics 2026-01-04 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2601.01599 False False 2601.01337 HyperNetWalk: A Unified Framework for Personalized and Cohort-Level Cancer Driver Gene Identification via Reverse Inference on Layered Signaling-Regulatory Network 2026-01-04 q-bio.MN;q-bio.QM q-bio.MN https://arxiv.org/abs/2601.01337 False False 2601.01337 HyperNetWalk: A Unified Framework for Personalized and Cohort-Level Cancer Driver Gene Identification via Reverse Inference on Layered Signaling-Regulatory Network 2026-01-04 q-bio.MN;q-bio.QM q-bio.MN https://arxiv.org/abs/2601.01337 False False 2601.01245 Model-Assisted Causal Inference for the Treatment Effect on Recurrent Events in the Presence of Terminal Events 2026-01-03 q-bio.QM;q-bio.TO;stat.AP;stat.ME q-bio.QM https://arxiv.org/abs/2601.01245 False False 2601.01116 Beyond P-Values: Importing Quantitative Finance's Risk and Regret Metrics for AI in Learning Health Systems 2026-01-03 q-bio.QM;stat.ME q-bio.QM https://arxiv.org/abs/2601.01116 False False 2601.01089 Central Dogma Transformer: Towards Mechanism-Oriented AI for Cellular Understanding 2026-01-03 cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2601.01089 False False 2601.04231 Where do We Poop? City-Wide Simulation of Defecation Behavior for Wastewater-Based Epidemiology 2026-01-03 cs.MA;physics.soc-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2601.04231 False False 2601.04231 Where Do We Poop? City-Wide Simulation of Defecation Behavior for Wastewater-Based Epidemiology 2026-01-03 cs.MA;physics.soc-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2601.04231 False False 2601.04231 Where Do We Poop? City-Wide Simulation of Defecation Behavior for Wastewater-Based Epidemiology 2026-01-03 cs.MA;physics.soc-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2601.04231 False False 2601.00599 The thermodynamics of pressure activated assembly of supramolecules in isochoric and isobaric systems 2026-01-02 physics.soft;q-bio.BM q-bio.BM https://arxiv.org/abs/2601.00599 False False 2601.00608 Peak-Nadir Encoding for Efficient CGM Data Compression and High-Fidelity Reconstruction 2026-01-02 q-bio.QM q-bio.QM https://arxiv.org/abs/2601.00608 False False 2601.00618 Quantifying the uncertainty of molecular dynamics simulations : Good-Turing statistics revisited 2026-01-02 q-bio.BM;q-bio.QM q-bio.BM https://arxiv.org/abs/2601.00618 False False 2601.00647 Physio-DPO: Aligning Large Language Models with the Protein Energy Landscape to Eliminate Structural Hallucinations 2026-01-02 cs.CE;cs.CL;q-bio.QM q-bio.QM https://arxiv.org/abs/2601.00647 False False 2601.00656 Quantum Simulation of Protein Fragment Electronic Structure Using Moment-based Adaptive Variational Quantum Algorithms 2026-01-02 cs.ET;q-bio.QM q-bio.QM https://arxiv.org/abs/2601.00656 False False 2601.00707 Gardner volumes and self-organization in a minimal model of complex ecosystems 2026-01-02 math.DS;physics.AO;q-bio.PE q-bio.PE https://arxiv.org/abs/2601.00707 False False 2601.00769 Evolutionary and Structural Constraints Define a Mutation-Resistant Catalytic Core in E. coli Serine Hydroxy methyltransferase (SHMT) 2026-01-02 q-bio.BM;q-bio.PE q-bio.BM https://arxiv.org/abs/2601.00769 False False 2601.00941 Comparative Analysis of Formula and Structure Prediction from Tandem Mass Spectra 2026-01-02 cs.AI;cs.CE;q-bio.QM q-bio.QM https://arxiv.org/abs/2601.00941 False False 2601.00515 The Physics of Causation 2026-01-02 physics.bio-ph;physics.hist-ph;q-bio.MN;q-bio.PE q-bio.MN https://arxiv.org/abs/2601.00515 False False 2601.00757 Modeling Epidemic Dynamics of Mutant Strains with Evolutionary Game-based Vaccination Behavior 2026-01-02 cs.SI;physics.soc-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2601.00757 False False 2601.00984 A Biologically Plausible Dense Associative Memory with Exponential Capacity 2026-01-02 q-bio.NC q-bio.NC https://arxiv.org/abs/2601.00984 False False 2601.00984 A Biologically Plausible Dense Associative Memory with Exponential Capacity 2026-01-02 q-bio.NC q-bio.NC https://arxiv.org/abs/2601.00984 False False 2601.00515 The Physics of Causation 2026-01-02 physics.bio-ph;physics.hist-ph;q-bio.MN;q-bio.PE q-bio.MN https://arxiv.org/abs/2601.00515 False False 2601.00515 The Physics of Causation 2026-01-02 physics.bio-ph;physics.hist-ph;q-bio.MN;q-bio.PE q-bio.MN https://arxiv.org/abs/2601.00515 False False 2601.00618 Quantifying the uncertainty of molecular dynamics simulations : Good-Turing statistics revisited 2026-01-02 q-bio.BM;q-bio.QM q-bio.BM https://arxiv.org/abs/2601.00618 False False 2601.00618 Quantifying the uncertainty of molecular dynamics simulations : Good-Turing statistics revisited 2026-01-02 q-bio.BM;q-bio.QM q-bio.BM https://arxiv.org/abs/2601.00618 False False 2601.00143 MethConvTransformer: A Deep Learning Framework for Cross-Tissue Alzheimer's Disease Detection 2026-01-01 cs.AI;q-bio.GN q-bio.GN https://arxiv.org/abs/2601.00143 False False 2601.00277 Benchmarking Preprocessing and Integration Methods in Single-Cell Genomics 2026-01-01 cs.AI;q-bio.QM q-bio.QM https://arxiv.org/abs/2601.00277 False False 2601.00460 Non-dilemmatic social dynamics promote cooperation in multilayer networks 2026-01-01 physics.soc-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2601.00460 False False 2601.00466 Rogue Variable Theory: A Quantum-Compatible Cognition Framework with a Rosetta Stone Alignment Algorithm 2026-01-01 q-bio.NC q-bio.NC https://arxiv.org/abs/2601.00466 False False 2601.00323 Self-assembled versus biological pattern formation in geology 2026-01-01 physics.EP;physics.PS;physics.geo-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2601.00323 False False 2601.00505 Effect of Electric Charge on Biotherapeutic Transport, Binding and Absorption: A Computational Study 2026-01-01 cs.CE;cs.NA;math.NA;physics.flu-dyn;physics.med-ph;q-bio.BM q-bio.BM https://arxiv.org/abs/2601.00505 False False 2601.06094 Auditory Filter Behavior and Updated Estimated Constants 2026-01-01 cs.SD;cs.SY;eess.AS;eess.SP;eess.SY;q-bio.TO q-bio.TO https://arxiv.org/abs/2601.06094 False False 2601.00374 The spontaneous emergence of leaders and followers in a mathematical model of cranial neural crest cell migration 2026-01-01 q-bio.CB q-bio.CB https://arxiv.org/abs/2601.00374 False False 2512.24654 Muscle Synergy Patterns During Running: Coordinative Mechanisms From a Neuromechanical Perspective 2025-12-31 q-bio.NC;q-bio.QM q-bio.NC https://arxiv.org/abs/2512.24654 False False 2512.24779 The tournament ratchet's clicktime process, and metastability in a Moran model 2025-12-31 math.PR;q-bio.PE q-bio.PE https://arxiv.org/abs/2512.24779 False False 2512.24930 Constraints on the perfect phylogeny mixture model and their effect on reducing degeneracy 2025-12-31 q-bio.PE;stat.OT q-bio.PE https://arxiv.org/abs/2512.24930 False False 2512.24969 Large language models and the entropy of English 2025-12-31 cs.CL;physics.bio-ph;physics.stat-mech;q-bio.NC q-bio.NC https://arxiv.org/abs/2512.24969 False False 2512.24977 SymSeqBench: a unified framework for the generation and analysis of rule-based symbolic sequences and datasets 2025-12-31 cs.AI;cs.LG;cs.NE;q-bio.NC q-bio.NC https://arxiv.org/abs/2512.24977 False False 2601.00073 Non-Contact and Non-Destructive Detection of Structural Defects in Bioprinted Constructs Using Video-Based Vibration Analysis 2025-12-31 q-bio.QM q-bio.QM https://arxiv.org/abs/2601.00073 False False 2512.24945 Dynamic response phenotypes and model discrimination in systems and synthetic biology 2025-12-31 math.OC;q-bio.QM q-bio.QM https://arxiv.org/abs/2512.24945 False False 2601.00895 Deep Learning Framework for RNA Inverse Folding with Geometric Structure Potentials 2025-12-31 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2601.00895 False False 2512.24643 Diagnosing Heteroskedasticity and Resolving Multicollinearity Paradoxes in Physicochemical Property Prediction 2025-12-31 cs.LG;physics.chem-ph;q-bio.BM;stat.AP q-bio.BM https://arxiv.org/abs/2512.24643 False False 2512.24843 friends.test: rank-based method for feature selection in interaction matrices 2025-12-31 q-bio.QM q-bio.QM https://arxiv.org/abs/2512.24843 False False 2601.00050 Domain-aware priors stabilize, not merely enable, vertical federated learning in data-scarce coral multi-omics 2025-12-31 q-bio.QM q-bio.QM https://arxiv.org/abs/2601.00050 False False 2601.00050 Domain-aware priors stabilize, not merely enable, vertical federated learning in data-scarce coral multi-omics 2025-12-31 q-bio.QM q-bio.QM https://arxiv.org/abs/2601.00050 False False 2512.24643 Diagnosing Heteroskedasticity and Resolving Multicollinearity Paradoxes in Physicochemical Property Prediction 2025-12-31 cs.LG;physics.chem-ph;q-bio.BM;stat.AP q-bio.BM https://arxiv.org/abs/2512.24643 False False 2512.23922 Non-stationary dynamics of interspike intervals in neuronal populations 2025-12-30 physics.dis-nn;q-bio.NC q-bio.NC https://arxiv.org/abs/2512.23922 False False 2512.24401 Finite element analysis of very large bone models based on micro-CT scans 2025-12-30 cs.NA;math.NA;physics.med-ph;q-bio.QM q-bio.QM https://arxiv.org/abs/2512.24401 False False 2512.24427 Epigenetic Control and Reprogramming-Induced Potential Landscapes of Gene Regulatory Networks: A Quantitative Theoretical Approach 2025-12-30 physics.AO;physics.CD;physics.bio-ph;q-bio.MN;q-bio.QM q-bio.MN https://arxiv.org/abs/2512.24427 False False 2512.24439 Complexity and dynamics of partially symmetric random neural networks 2025-12-30 physics.bio-ph;q-bio.NC q-bio.NC https://arxiv.org/abs/2512.24439 False False 2512.24354 SeedFold: Scaling Biomolecular Structure Prediction 2025-12-30 q-bio.BM q-bio.BM https://arxiv.org/abs/2512.24354 False False 2601.00036 Unifying Weak Independence and Signal Hierarchy Theory: Extended Biological Petri Net Formalism with Application to Vibrio fischeri Quorum Sensing 2025-12-30 q-bio.MN;q-bio.QM q-bio.MN https://arxiv.org/abs/2601.00036 False False 2601.00863 Selective Imperfection as a Generative Framework for Analysis, Creativity and Discovery 2025-12-30 cs.LG;physics.dis-nn;q-bio.BM q-bio.BM https://arxiv.org/abs/2601.00863 False False 2512.24192 SeedProteo: Accurate De Novo All-Atom Design of Protein Binders 2025-12-30 q-bio.BM q-bio.BM https://arxiv.org/abs/2512.24192 False False 2512.24427 Epigenetic feedback reshapes dynamical landscapes in gene regulatory networks 2025-12-30 physics.AO;physics.CD;physics.bio-ph;q-bio.MN;q-bio.QM q-bio.MN https://arxiv.org/abs/2512.24427 False False 2512.24427 Epigenetic feedback reshapes dynamical landscapes in gene regulatory networks 2025-12-30 physics.AO;physics.CD;physics.bio-ph;q-bio.MN;q-bio.QM q-bio.MN https://arxiv.org/abs/2512.24427 False False 2512.23137 Graph Neural Networks with Transformer Fusion of Brain Connectivity Dynamics and Tabular Data for Forecasting Future Tobacco Use 2025-12-29 cs.LG;eess.IV;q-bio.NC q-bio.NC https://arxiv.org/abs/2512.23137 False False 2512.23144 An Inference-Based Architecture for Intent and Affordance Saturation in Decision-Making 2025-12-29 cs.AI;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2512.23144 False False 2512.23146 A Network of Biologically Inspired Rectified Spectral Units (ReSUs) Learns Hierarchical Features Without Error Backpropagation 2025-12-29 q-bio.NC q-bio.NC https://arxiv.org/abs/2512.23146 False False 2512.23175 HELM-BERT: A Transformer for Medium-sized Peptide Property Prediction 2025-12-29 cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2512.23175 False False 2512.23301 Somatosensory prediction in premature neonates: iatrogenic pain experience increases repetition suppression and deviance detection of innocuous stimuli in a tactile oddball protocol 2025-12-29 q-bio.NC q-bio.NC https://arxiv.org/abs/2512.23301 False False 2512.23442 Bandwidth Selection of Density Estimators over Treespaces 2025-12-29 q-bio.PE q-bio.PE https://arxiv.org/abs/2512.23442 False False 2512.23531 Ambiguous signals and efficient codes 2025-12-29 physics.bio-ph;q-bio.MN q-bio.MN https://arxiv.org/abs/2512.23531 False False 2512.23554 An integrated quantitative single-objective light-sheet microscope for subcellular dynamics in embryos and cultured multicellular systems 2025-12-29 physics.bio-ph;physics.ins-det;physics.optics;q-bio.QM q-bio.QM https://arxiv.org/abs/2512.23554 False False 2512.23661 Dynamical incompatibilities in paced finger tapping experiments 2025-12-29 q-bio.NC q-bio.NC https://arxiv.org/abs/2512.23661 False False 2512.23784 Sheaf-theoretic representation of the proteolipid code 2025-12-29 physics.bio-ph;q-bio.BM;q-bio.MN q-bio.BM https://arxiv.org/abs/2512.23784 False False 2512.23861 Stochastic multi-step cell size homeostasis model for cycling human cells 2025-12-29 q-bio.CB;q-bio.QM q-bio.CB https://arxiv.org/abs/2512.23861 False False 2601.00030 Forking Anatomy: How MorphoDepot Applies the Open-Source Development Model to 3D Digital Morphology 2025-12-29 q-bio.QM q-bio.QM https://arxiv.org/abs/2601.00030 False False 2601.05277 Evolving Cognitive Architectures 2025-12-29 cs.AI;cs.NE;q-bio.NC q-bio.NC https://arxiv.org/abs/2601.05277 False False 2512.23877 High-fidelity robotic PCR amplification 2025-12-29 q-bio.QM q-bio.QM https://arxiv.org/abs/2512.23877 False False 2512.23877 High-fidelity robotic PCR amplification 2025-12-29 q-bio.QM q-bio.QM https://arxiv.org/abs/2512.23877 False False 2512.23877 High-fidelity robotic PCR amplification 2025-12-29 q-bio.QM q-bio.QM https://arxiv.org/abs/2512.23877 False False 2512.23661 Dynamical incompatibilities in paced finger tapping experiments 2025-12-29 q-bio.NC q-bio.NC https://arxiv.org/abs/2512.23661 False False 2512.23661 Dynamical incompatibilities in paced finger tapping experiments 2025-12-29 q-bio.NC q-bio.NC https://arxiv.org/abs/2512.23661 False False 2512.22785 Nonlinear Dynamical Modeling of Human Intracranial Brain Activity with Flexible Inference 2025-12-28 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2512.22785 False False 2512.22820 Epigenetic state encodes locus-specific chromatin mechanics 2025-12-28 physics.bio-ph;physics.soft;q-bio.BM;q-bio.GN q-bio.BM https://arxiv.org/abs/2512.22820 False False 2512.22868 "The body is not there to compute: Comment on ""Informational embodiment: Computational role of information structure in codes and robots"" by Pitti et al" 2025-12-28 cs.AI;cs.RO;q-bio.NC;q-bio.QM q-bio.NC https://arxiv.org/abs/2512.22868 False False 2512.22946 Determining habitat anomalies in cross-diffusion predator-prey chemotaxis models 2025-12-28 math.AP;q-bio.CB q-bio.CB https://arxiv.org/abs/2512.22946 False False 2512.23080 QSAR-Guided Generative Framework for the Discovery of Synthetically Viable Odorants 2025-12-28 cs.LG;physics.chem-ph;q-bio.BM;q-bio.QM q-bio.BM https://arxiv.org/abs/2512.23080 False False 2601.05275 On the dynamical stability of skeletal muscle 2025-12-28 math.DS;physics.med-ph;q-bio.TO q-bio.TO https://arxiv.org/abs/2601.05275 False False 2512.22485 JParc: Joint cortical surface parcellation with registration 2025-12-27 cs.CV;eess.IV;q-bio.NC q-bio.NC https://arxiv.org/abs/2512.22485 False False 2512.22568 Lessons from Neuroscience for AI: How integrating Actions, Compositional Structure and Episodic Memory could enable Safe, Interpretable and Human-Like AI 2025-12-27 cs.AI;physics.bio-ph;q-bio.NC q-bio.NC https://arxiv.org/abs/2512.22568 False False 2512.22651 Decoding the Architecture of Living Systems 2025-12-27 physics.app-ph;physics.bio-ph;physics.dis-nn;q-bio.QM q-bio.QM https://arxiv.org/abs/2512.22651 False False 2512.23754 Process Bigraphs and the Architecture of Compositional Systems Biology 2025-12-27 q-bio.QM q-bio.QM https://arxiv.org/abs/2512.23754 False False 2512.22415 Hierarchical Preemption: A Novel Information-Theoretic Control Mechanism in Lambda Phage Decision-Making 2025-12-27 q-bio.MN;q-bio.QM q-bio.MN https://arxiv.org/abs/2512.22415 False False 2512.22506 The effect of dispersal area on the extinction threshold 2025-12-27 q-bio.PE q-bio.PE https://arxiv.org/abs/2512.22506 False False 2512.21895 Drug discovery guided by maximum drug likeness 2025-12-26 q-bio.QM q-bio.QM https://arxiv.org/abs/2512.21895 False False 2512.21952 Characterizing Fungal Infections in the All of Us Research Program 2025-12-26 q-bio.QM q-bio.QM https://arxiv.org/abs/2512.21952 False False 2512.21997 Sample volume as a key design parameter in affinity-based biosensors 2025-12-26 q-bio.QM q-bio.QM https://arxiv.org/abs/2512.21997 False False 2512.22045 Learning continually with representational drift 2025-12-26 q-bio.NC q-bio.NC https://arxiv.org/abs/2512.22045 False False 2512.22077 Heterogeneous fragmentation of empty sites promotes cooperation in phenotypically diverse populations with tag-mediated interactions 2025-12-26 cs.SI;physics.AO;physics.soc-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2512.22077 False False 2512.21988 The Color-Clinical Decoupling: Why Perceptual Calibration Fails Clinical Biomarkers in Smartphone Dermatology 2025-12-26 cs.CV;eess.IV;q-bio.QM q-bio.QM https://arxiv.org/abs/2512.21988 False False 2512.22098 Exact inference via quasi-conjugacy in two-parameter Poisson-Dirichlet hidden Markov models 2025-12-26 math.PR;math.ST;q-bio.PE;stat.CO;stat.ME;stat.TH q-bio.PE https://arxiv.org/abs/2512.22098 False False 2512.21881 SLIM-Brain: A Data- and Training-Efficient Foundation Model for fMRI Data Analysis 2025-12-26 cs.CV;q-bio.NC q-bio.NC https://arxiv.org/abs/2512.21881 False False 2512.21997 Sample volume as a key design parameter in affinity-based biosensors 2025-12-26 q-bio.QM q-bio.QM https://arxiv.org/abs/2512.21997 False False 2512.22098 Exact inference via quasi-conjugacy in two-parameter Poisson-Dirichlet hidden Markov models 2025-12-26 math.PR;math.ST;q-bio.PE;stat.CO;stat.ME;stat.TH q-bio.PE https://arxiv.org/abs/2512.22098 False False 2512.21997 Sample volume as a key design parameter in affinity-based biosensors 2025-12-26 q-bio.QM q-bio.QM https://arxiv.org/abs/2512.21997 False False 2512.22098 Exact inference via quasi-conjugacy in two-parameter Poisson-Dirichlet hidden Markov models 2025-12-26 math.PR;math.ST;q-bio.PE;stat.CO;stat.ME;stat.TH q-bio.PE https://arxiv.org/abs/2512.22098 False False 2512.22098 Exact inference via quasi-conjugacy in two-parameter Poisson-Dirichlet hidden Markov models 2025-12-26 math.PR;math.ST;q-bio.PE;stat.CO;stat.ME;stat.TH q-bio.PE https://arxiv.org/abs/2512.22098 False False 2512.22098 Exact inference via quasi-conjugacy in two-parameter Poisson-Dirichlet hidden Markov models 2025-12-26 math.PR;math.ST;q-bio.PE;stat.CO;stat.ME;stat.TH q-bio.PE https://arxiv.org/abs/2512.22098 False False 2512.21988 Region-Specific Calibration Achieves Excellent Inter-Device Reliability for Smartphone Dermatology: A Multi-Device Benchmark on Korean Facial Skin 2025-12-26 cs.CV;eess.IV;q-bio.QM q-bio.QM https://arxiv.org/abs/2512.21988 False False 2512.21988 Region-Specific Calibration Achieves Excellent Inter-Device Reliability for Smartphone Dermatology: A Multi-Device Benchmark on Korean Facial Skin 2025-12-26 cs.CV;eess.IV;q-bio.QM q-bio.QM https://arxiv.org/abs/2512.21988 False False 2512.21988 Region-Specific Calibration Achieves Excellent Inter-Device Reliability for Smartphone Dermatology: A Multi-Device Benchmark on Korean Facial Skin 2025-12-26 cs.CV;eess.IV;q-bio.QM q-bio.QM https://arxiv.org/abs/2512.21988 False False 2512.21988 Region-Specific Calibration Achieves Excellent Inter-Device Reliability for Smartphone Dermatology: A Multi-Device Benchmark on Korean Facial Skin 2025-12-26 cs.CV;eess.IV;q-bio.QM q-bio.QM https://arxiv.org/abs/2512.21988 False False 2512.21455 Distributed delay stabilizes bistable genetic networks 2025-12-25 q-bio.SC q-bio.SC https://arxiv.org/abs/2512.21455 False False 2512.21623 Democratizing Drug Discovery with an Orchestrated, Knowledge-Driven Multi-Agent Team for User-Guided Therapeutic Design 2025-12-25 cs.AI;cs.MA;q-bio.QM q-bio.QM https://arxiv.org/abs/2512.21623 False False 2512.21659 Metaboplasticity: The Reciprocal Regulation of Neuronal Activity and Cellular Energetics 2025-12-25 q-bio.NC q-bio.NC https://arxiv.org/abs/2512.21659 False False 2512.21765 Phylogenetics in a warm place: computational aspects of the Tropical Grassmannian 2025-12-25 q-bio.PE;stat.CO q-bio.PE https://arxiv.org/abs/2512.21765 False False 2512.21768 Numerical Twin with Two Dimensional Ornstein--Uhlenbeck Processes of Transient Oscillations in EEG signal 2025-12-25 q-bio.NC q-bio.NC https://arxiv.org/abs/2512.21768 False False 2512.20887 Using stationary information flows to prove kinetic uncertainty relations in biochemical control systems 2025-12-24 q-bio.MN;q-bio.SC q-bio.MN https://arxiv.org/abs/2512.20887 False False 2512.20924 Clever Hans in Chemistry: Chemist Style Signals Confound Activity Prediction on Public Benchmarks 2025-12-24 cs.LG;physics.chem-ph;q-bio.BM q-bio.BM https://arxiv.org/abs/2512.20924 False False 2512.20929 Decoding Predictive Inference in Visual Language Processing via Spatiotemporal Neural Coherence 2025-12-24 cs.CL;q-bio.NC q-bio.NC https://arxiv.org/abs/2512.20929 False False 2512.21129 Active inference and artificial reasoning 2025-12-24 physics.data-an;q-bio.NC;stat.ML q-bio.NC https://arxiv.org/abs/2512.21129 False False 2512.21301 Transcriptome-Conditioned Personalized De Novo Drug Generation for AML Using Metaheuristic Assembly and Target-Driven Filtering 2025-12-24 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2512.21301 False False 2512.21397 Tree rearrangement graphs admit paths of decreasing Robinson-Foulds distance 2025-12-24 q-bio.PE q-bio.PE https://arxiv.org/abs/2512.21397 False False 2512.22257 LiveProteinBench: A Contamination-Free Benchmark for Assessing Models' Specialized Capabilities in Protein Science 2025-12-24 q-bio.QM q-bio.QM https://arxiv.org/abs/2512.22257 False False 2512.22262 INSIGHT: Spatially resolved survival modelling from routine histology crosslinked with molecular profiling reveals prognostic epithelial-immune axes in stage II/III colorectal cancer 2025-12-24 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2512.22262 False False 2512.22270 Measuring the time-scale-dependent information flow between maternal and fetal heartbeats during the third trimester 2025-12-24 physics.med-ph;q-bio.QM q-bio.QM https://arxiv.org/abs/2512.22270 False False 2512.21320 An Allele-Centric Pan-Graph-Matrix Representation for Scalable Pangenome Analysis 2025-12-24 cs.DB;cs.DS;q-bio.GN q-bio.GN https://arxiv.org/abs/2512.21320 False False 2512.22262 INSIGHT: Spatially resolved survival modelling from routine histology crosslinked with molecular profiling reveals prognostic epithelial-immune axes in stage II/III colorectal cancer 2025-12-24 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2512.22262 False False 2512.22262 INSIGHT: Spatially resolved survival modelling from routine histology crosslinked with molecular profiling reveals prognostic epithelial-immune axes in stage II/III colorectal cancer 2025-12-24 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2512.22262 False False 2512.19939 Methods for Analyzing RNA Pseudoknots via Chord Diagrams and Intersection Graphs 2025-12-23 math.CO;q-bio.BM;q-bio.QM q-bio.BM https://arxiv.org/abs/2512.19939 False False 2512.20044 Self-motion as a structural prior for coherent and robust formation of cognitive maps 2025-12-23 cs.NE;q-bio.NC q-bio.NC https://arxiv.org/abs/2512.20044 False False 2512.20263 Drug-like antibodies with low immunogenicity in human panels designed with Latent-X2 2025-12-23 q-bio.BM q-bio.BM https://arxiv.org/abs/2512.20263 False False 2512.20319 Deep Learning Classification of EEG Responses to Multi-Dimensional Transcranial Electrical Stimulation 2025-12-23 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2512.20319 False False 2512.20333 SynCraft: Guiding Large Language Models to Predict Edit Sequences for Molecular Synthesizability Optimization 2025-12-23 cs.AI;q-bio.QM q-bio.QM https://arxiv.org/abs/2512.20333 False False 2512.20547 Behavioral patterns and mean-field games in epidemiological models 2025-12-23 math.OC;q-bio.PE q-bio.PE https://arxiv.org/abs/2512.20547 False False 2512.20481 Coherence in the brain unfolds across separable temporal regimes 2025-12-23 cs.CL;q-bio.NC q-bio.NC https://arxiv.org/abs/2512.20481 False False 2512.22225 Literature Mining System for Nutraceutical Biosynthesis: From AI Framework to Biological Insight 2025-12-23 cs.AI;q-bio.QM q-bio.QM https://arxiv.org/abs/2512.22225 False False 2512.22246 A nonconservative kinetic framework with logistic growth for modeling the coexistence in a multi-species ecological system 2025-12-23 math.MP;physics.math-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2512.22246 False False 2512.20581 MERGE-RNA: a physics-based model to predict RNA secondary structure ensembles with chemical probing 2025-12-23 physics.bio-ph;q-bio.BM q-bio.BM https://arxiv.org/abs/2512.20581 False False 2512.20481 Coherence in the brain unfolds across separable temporal regimes 2025-12-23 cs.CL;q-bio.NC q-bio.NC https://arxiv.org/abs/2512.20481 False False 2512.20481 Coherence in the brain unfolds across separable temporal regimes 2025-12-23 cs.CL;q-bio.NC q-bio.NC https://arxiv.org/abs/2512.20481 False False 2512.20581 MERGE-RNA: a physics-based model to predict RNA secondary structure ensembles with chemical probing 2025-12-23 physics.bio-ph;q-bio.BM q-bio.BM https://arxiv.org/abs/2512.20581 False False 2512.20581 MERGE-RNA: a physics-based model to predict RNA secondary structure ensembles with chemical probing 2025-12-23 physics.bio-ph;q-bio.BM q-bio.BM https://arxiv.org/abs/2512.20581 False False 2512.19416 Machine Learning of Temperature-dependent Chemical Kinetics Using Parallel Droplet Microreactors 2025-12-22 cs.SY;eess.SY;physics.bio-ph;q-bio.QM q-bio.QM https://arxiv.org/abs/2512.19416 False False 2512.19419 Hair-thin confocal fluorescence endo-microscopy for deep-brain in-vivo imaging 2025-12-22 physics.optics;q-bio.NC q-bio.NC https://arxiv.org/abs/2512.19419 False False 2512.19450 A Rate-Distortion Perspective on the Emergence of Number Sense in Unsupervised Generative Models 2025-12-22 q-bio.NC q-bio.NC https://arxiv.org/abs/2512.19450 False False 2512.19485 Enabling Evolutionary Therapy in Metastatic Cancer Lacking Serum Biomarkers 2025-12-22 q-bio.PE q-bio.PE https://arxiv.org/abs/2512.19485 0.7556 0.787 True 6 5.7 False 2512.18566 Comparing Dynamical Models Through Diffeomorphic Vector Field Alignment 2025-12-21 cs.LG;cs.SY;eess.SY;q-bio.NC q-bio.NC https://arxiv.org/abs/2512.18566 False False 2512.18652 Impact of temporary lockdown on disease extinction in assortative networks 2025-12-21 physics.stat-mech;q-bio.PE q-bio.PE https://arxiv.org/abs/2512.18652 False False 2512.18752 Quantifying the Emergence of Selection Prior to Biological Evolution 2025-12-21 physics.bio-ph;q-bio.MN;q-bio.PE q-bio.MN https://arxiv.org/abs/2512.18752 False False 2512.18585 Deep Teleportation: Quantum Simulation of Conscious Report in Attentional Blink 2025-12-21 q-bio.NC q-bio.NC https://arxiv.org/abs/2512.18585 False False 2512.18566 Comparing Dynamical Models Through Diffeomorphic Vector Field Alignment 2025-12-21 cs.LG;cs.SY;eess.SY;q-bio.NC q-bio.NC https://arxiv.org/abs/2512.18566 False False 2512.18566 Comparing Dynamical Models Through Diffeomorphic Vector Field Alignment 2025-12-21 cs.LG;cs.SY;eess.SY;q-bio.NC q-bio.NC https://arxiv.org/abs/2512.18566 False False 2512.18652 Impact of temporary lockdown on disease extinction in assortative networks 2025-12-21 physics.stat-mech;q-bio.PE q-bio.PE https://arxiv.org/abs/2512.18652 False False 2512.18652 Impact of temporary lockdown on disease extinction in assortative networks 2025-12-21 physics.stat-mech;q-bio.PE q-bio.PE https://arxiv.org/abs/2512.18652 False False 2512.18165 Coord2Region: A Python Package for Mapping 3D Brain Coordinates to Atlas Labels, Literature, and AI Summaries 2025-12-20 q-bio.NC q-bio.NC https://arxiv.org/abs/2512.18165 False False 2512.18197 Standardized Evaluation of Automatic Methods for Perivascular Spaces Segmentation in MRI -- MICCAI 2024 Challenge Results 2025-12-20 cs.CV;eess.IV;q-bio.QM q-bio.QM https://arxiv.org/abs/2512.18197 False False 2512.18216 Phage-antibiotic therapy under density dependent bacterial defenses 2025-12-20 q-bio.PE q-bio.PE https://arxiv.org/abs/2512.18216 False False 2512.18387 From Brain Scans to Therapy Response: PDE Modelling of Immunotherapy for Glioblastoma 2025-12-20 q-bio.PE q-bio.PE https://arxiv.org/abs/2512.18387 False False 2512.18471 The Geometry of Abstraction: Continual Learning via Recursive Quotienting 2025-12-20 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2512.18471 False False 2512.18442 Markovian Promoter Models: A Mechanistic Alternative to Hill Functions in Gene Regulatory Networks 2025-12-20 q-bio.MN;q-bio.QM q-bio.MN https://arxiv.org/abs/2512.18442 False False 2512.18454 Out-of-Distribution Detection in Molecular Complexes via Diffusion Models for Irregular Graphs 2025-12-20 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2512.18454 False False 2512.18471 The Urysohn Ladder: Recursive Metric Contraction for Scalable Continual Learning 2025-12-20 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2512.18471 False False 2512.18471 The Urysohn Ladder: Recursive Metric Contraction for Scalable Continual Learning 2025-12-20 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2512.18471 False False 2512.18454 Out-of-Distribution Detection in Molecular Complexes via Diffusion Models for Irregular Graphs 2025-12-20 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2512.18454 False False 2512.18454 Out-of-Distribution Detection in Molecular Complexes via Diffusion Models for Irregular Graphs 2025-12-20 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2512.18454 False False 2512.17989 The Subject of Emergent Misalignment in Superintelligence: An Anthropological, Cognitive Neuropsychological, Machine-Learning, and Ontological Perspective 2025-12-19 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2512.17989 False False 2512.17146 Biosecurity-Aware AI: Agentic Risk Auditing of Soft Prompt Attacks on ESM-Based Variant Predictors 2025-12-19 cs.CR;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2512.17146 False False 2512.17169 Application of machine learning to predict food processing level using Open Food Facts 2025-12-19 cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2512.17169 False False 2512.17255 From Priors to Predictions: Explaining and Visualizing Human Reasoning in a Graph Neural Network Framework 2025-12-19 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2512.17255 False False 2512.17317 Novel Kuramoto model with inhibition dynamics modeling scale-free avalanches and synchronization in neuronal cultures 2025-12-19 physics.dis-nn;q-bio.NC q-bio.NC https://arxiv.org/abs/2512.17317 False False 2512.17403 Piezo1 Decodes Mechanical Forces via Allosteric Network Reprogramming 2025-12-19 q-bio.MN q-bio.MN https://arxiv.org/abs/2512.17403 False False 2512.17491 On the abelian structure of noncompetitive chemical reaction networks 2025-12-19 math.PR;q-bio.MN q-bio.MN https://arxiv.org/abs/2512.17491 False False 2512.17512 BHiCect 2.0: Multi-resolution clustering of Hi-C data 2025-12-19 q-bio.GN q-bio.GN https://arxiv.org/abs/2512.17512 False False 2512.17517 PathBench-MIL: A Comprehensive AutoML and Benchmarking Framework for Multiple Instance Learning in Histopathology 2025-12-19 cs.CV;cs.LG;cs.NE;cs.SE;q-bio.TO q-bio.TO https://arxiv.org/abs/2512.17517 False False 2512.17525 Computational analysis reveals historical trajectory of East-Polynesian lunar calendars 2025-12-19 cs.CL;q-bio.PE q-bio.PE https://arxiv.org/abs/2512.17525 False False 2512.17597 Design of a minimal, allosteric, and ATPase-like machine using mechanical linkages 2025-12-19 physics.bio-ph;physics.soft;q-bio.MN q-bio.MN https://arxiv.org/abs/2512.17597 False False 2512.17655 Bitbox: Behavioral Imaging Toolbox for Computational Analysis of Behavior from Videos 2025-12-19 cs.CV;q-bio.NC q-bio.NC https://arxiv.org/abs/2512.17655 False False 2512.17735 Gravity Prior and Temporal Horizon Shape Interceptive Behavior under Active Inference 2025-12-19 q-bio.NC q-bio.NC https://arxiv.org/abs/2512.17735 False False 2512.17775 How Light Shapes Memory: Beta Synchrony in the Temporal-Parietal Cortex Predicts Cognitive Ergonomics for BCI Applications 2025-12-19 q-bio.NC q-bio.NC https://arxiv.org/abs/2512.17775 False False 2512.17815 Structure-Aware Antibody Design with Affinity-Optimized Inverse Folding 2025-12-19 cs.CE;q-bio.BM q-bio.BM https://arxiv.org/abs/2512.17815 False False 2512.17825 Mathematical Modeling of Biofilm Eradication Using Optimal Control 2025-12-19 math.AP;q-bio.PE q-bio.PE https://arxiv.org/abs/2512.17825 False False 2512.17972 Re-assessing the evidence for mental rotation abilities in children using computational models 2025-12-19 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2512.17972 False False 2512.17978 MEGState: Phoneme Decoding from Magnetoencephalography Signals 2025-12-19 cs.LG;cs.SD;q-bio.NC q-bio.NC https://arxiv.org/abs/2512.17978 False False 2512.18113 Responses to transient perturbation can distinguish intrinsic from latent criticality in spiking neural populations 2025-12-19 physics.dis-nn;q-bio.NC q-bio.NC https://arxiv.org/abs/2512.18113 False False 2512.18139 Adapting cluster graphs for inference of continuous trait evolution on phylogenetic networks 2025-12-19 q-bio.PE;stat.CO q-bio.PE https://arxiv.org/abs/2512.18139 False False 2512.20663 Multiple-Timescale Solutions to the Susceptible-Infected-Recovered (SIR) Epidemic Model Equations in the Case of High Basic Reproduction Number 2025-12-19 q-bio.PE q-bio.PE https://arxiv.org/abs/2512.20663 False False 2512.23728 Spike-Timing-Dependent Plasticity for Bernoulli Message Passing 2025-12-19 cs.LG;cs.NE;q-bio.NC q-bio.NC https://arxiv.org/abs/2512.23728 0.7887 0.7562 True 6 6.3 False 2512.17988 easyplater: The easy way to generate microplate designs deconvolved from multivariate clinical data 2025-12-19 q-bio.QM q-bio.QM https://arxiv.org/abs/2512.17988 False False 2512.17989 The Subject of Emergent Misalignment in Superintelligence: An Anthropological, Cognitive Neuropsychological, Machine-Learning, and Ontological Perspective 2025-12-19 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2512.17989 False False 2512.18114 Greater than the Sum of Its Parts: Building Substructure into Protein Encoding Models 2025-12-19 q-bio.QM q-bio.QM https://arxiv.org/abs/2512.18114 False False 2512.17491 On the abelian structure of noncompetitive chemical reaction networks 2025-12-19 math.PR;q-bio.MN q-bio.MN https://arxiv.org/abs/2512.17491 False False 2512.17491 On the abelian structure of noncompetitive chemical reaction networks 2025-12-19 math.PR;q-bio.MN q-bio.MN https://arxiv.org/abs/2512.17491 False False 2512.16084 Can plants grow on the Moon and Mars: seed germination enhancement using magnesium oxide coated halloysite nanotubes (MgO HNTs) 2025-12-18 q-bio.QM q-bio.QM https://arxiv.org/abs/2512.16084 False False 2512.16691 Computational support for case-heavy proofs in mathematical phylogenetics 2025-12-18 q-bio.PE q-bio.PE https://arxiv.org/abs/2512.16691 False False 2512.17106 Weak Independence and Coupled Parallelism in Biological Petri Nets 2025-12-18 q-bio.MN;q-bio.QM q-bio.MN https://arxiv.org/abs/2512.17106 False False 2512.17129 DiffeoMorph: Learning to Morph 3D Shapes Using Differentiable Agent-Based Simulations 2025-12-18 cs.LG;cs.MA;cs.RO;q-bio.QM q-bio.QM https://arxiv.org/abs/2512.17129 False False 2512.17126 DNAMotifTokenizer: Towards Biologically Informed Tokenization of Genomic Sequences 2025-12-18 q-bio.GN q-bio.GN https://arxiv.org/abs/2512.17126 False False 2512.16616 The hands of time: Moving my body to keep time order in the brain 2025-12-18 q-bio.NC q-bio.NC https://arxiv.org/abs/2512.16616 False False 2601.04214 Active Sensing Shapes Real-World Decision-Making through Dynamic Evidence Accumulation 2025-12-18 cs.AI;cs.HC;cs.RO;q-bio.NC q-bio.NC https://arxiv.org/abs/2601.04214 False False 2512.17129 DiffeoMorph: Learning to Morph 3D Shapes Using Differentiable Agent-Based Simulations 2025-12-18 cs.LG;cs.MA;cs.RO;q-bio.QM q-bio.QM https://arxiv.org/abs/2512.17129 False False 2512.17129 DiffeoMorph: Learning to Morph 3D Shapes Using Differentiable Agent-Based Simulations 2025-12-18 cs.LG;cs.MA;cs.RO;q-bio.QM q-bio.QM https://arxiv.org/abs/2512.17129 False False 2512.15118 Stochastic Modelling and Analysis of Within-Farm Highly Pathogenic Avian Influenza Dynamics in Dairy Cattle 2025-12-17 math.DS;q-bio.PE q-bio.PE https://arxiv.org/abs/2512.15118 False False 2512.15209 A multiscale framework integrating within-host infection kinetics with airborne transmission dynamics 2025-12-17 math.AP;q-bio.PE;q-bio.QM q-bio.PE https://arxiv.org/abs/2512.15209 False False 2512.15236 Modeling Plant Action Potentials under Photoperiod Stress via Hodgkin-Huxley Dynamics 2025-12-17 physics.bio-ph;q-bio.MN q-bio.MN https://arxiv.org/abs/2512.15236 False False 2512.15534 Characterizing Open-Ended Evolution Through Undecidability Mechanisms in Random Boolean Networks 2025-12-17 q-bio.PE q-bio.PE https://arxiv.org/abs/2512.15534 False False 2512.15645 Machine learning for RNA-targeting drug design 2025-12-17 q-bio.BM q-bio.BM https://arxiv.org/abs/2512.15645 False False 2512.15671 When sufficiency is insufficient: the functional information bottleneck for identifying probabilistic neural representations 2025-12-17 q-bio.NC q-bio.NC https://arxiv.org/abs/2512.15671 False False 2512.15706 Learning Model Parameter Dynamics in a Combination Therapy for Bladder Cancer from Sparse Biological Data 2025-12-17 cs.LG;q-bio.CB q-bio.CB https://arxiv.org/abs/2512.15706 False False 2512.15808 Foundation Models in Biomedical Imaging: Turning Hype into Reality 2025-12-17 cs.AI;cs.CV;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2512.15808 False False 2512.15828 Accessibility of Modified NK Fitness Landscapes 2025-12-17 q-bio.QM q-bio.QM https://arxiv.org/abs/2512.15828 False False 2512.15837 Handling Class Imbalance Problem in Skin Lesion Classification: Finding Strengths and Weaknesses of Various Balancing Techniques 2025-12-17 q-bio.QM q-bio.QM https://arxiv.org/abs/2512.15837 False False 2512.15930 Scalable Agentic Reasoning for Designing Biologics Targeting Intrinsically Disordered Proteins 2025-12-17 cs.AI;q-bio.QM q-bio.QM https://arxiv.org/abs/2512.15930 False False 2512.15948 Subjective functions 2025-12-17 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2512.15948 False False 2512.15984 Lifting Biomolecular Data Acquisition 2025-12-17 q-bio.BM;stat.ML q-bio.BM https://arxiv.org/abs/2512.15984 False False 2512.15830 From Minutes to Days: Scaling Intracranial Speech Decoding with Supervised Pretraining 2025-12-17 cs.CL;cs.SD;q-bio.NC q-bio.NC https://arxiv.org/abs/2512.15830 False False 2512.15891 Dynamical Mechanisms for Coordinating Long-term Working Memory Based on the Precision of Spike-timing in Cortical Neurons 2025-12-17 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2512.15891 False False 2512.15891 Dynamical Mechanisms for Coordinating Long-term Working Memory Based on the Precision of Spike-timing in Cortical Neurons 2025-12-17 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2512.15891 False False 2512.15534 Characterizing Open-Ended Evolution Through Undecidability Mechanisms in Random Boolean Networks 2025-12-17 q-bio.PE q-bio.PE https://arxiv.org/abs/2512.15534 False False 2512.15948 Subjective functions 2025-12-17 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2512.15948 False False 2512.15808 Foundation Models in Biomedical Imaging: Turning Hype into Reality 2025-12-17 cs.AI;cs.CV;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2512.15808 False False 2512.15808 Foundation Models in Biomedical Imaging: Turning Hype into Reality 2025-12-17 cs.AI;cs.CV;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2512.15808 False False 2512.15930 Scalable Agentic Reasoning for Designing Biologics Targeting Intrinsically Disordered Proteins 2025-12-17 cs.AI;q-bio.QM q-bio.QM https://arxiv.org/abs/2512.15930 False False 2512.15930 Scalable Agentic Reasoning for Designing Biologics Targeting Intrinsically Disordered Proteins 2025-12-17 cs.AI;q-bio.QM q-bio.QM https://arxiv.org/abs/2512.15930 False False 2512.15891 Dynamical Mechanisms for Coordinating Long-term Working Memory Based on the Precision of Spike-timing in Cortical Neurons 2025-12-17 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2512.15891 False False 2512.15891 Dynamical Mechanisms for Coordinating Long-term Working Memory Based on the Precision of Spike-timing in Cortical Neurons 2025-12-17 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2512.15891 False False 2512.15236 Modeling Plant Action Potentials under Photoperiod Stress via Hodgkin-Huxley Dynamics 2025-12-17 physics.bio-ph;q-bio.MN q-bio.MN https://arxiv.org/abs/2512.15236 False False 2512.15236 Modeling Plant Action Potentials under Photoperiod Stress via Hodgkin-Huxley Dynamics 2025-12-17 physics.bio-ph;q-bio.MN q-bio.MN https://arxiv.org/abs/2512.15236 False False 2512.15534 Characterizing Open-Ended Evolution Through Undecidability Mechanisms in Random Boolean Networks 2025-12-17 q-bio.PE q-bio.PE https://arxiv.org/abs/2512.15534 False False 2512.15534 Characterizing Open-Ended Evolution Through Undecidability Mechanisms in Random Boolean Networks 2025-12-17 q-bio.PE q-bio.PE https://arxiv.org/abs/2512.15534 False False 2512.15534 Characterizing Open-Ended Evolution Through Undecidability Mechanisms in Random Boolean Networks 2025-12-17 q-bio.PE q-bio.PE https://arxiv.org/abs/2512.15534 False False 2512.15534 Characterizing Open-Ended Evolution Through Undecidability Mechanisms in Random Boolean Networks 2025-12-17 q-bio.PE q-bio.PE https://arxiv.org/abs/2512.15534 False False 2512.15891 Dynamical Mechanisms for Coordinating Long-term Working Memory Based on the Precision of Spike-timing in Cortical Neurons 2025-12-17 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2512.15891 False False 2512.15891 Dynamical Mechanisms for Coordinating Long-term Working Memory Based on the Precision of Spike-timing in Cortical Neurons 2025-12-17 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2512.15891 False False 2512.15948 Subjective functions 2025-12-17 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2512.15948 False False 2512.15948 Subjective functions 2025-12-17 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2512.15948 False False 2512.15891 Dynamical Mechanisms for Coordinating Long-term Working Memory Based on the Precision of Spike-timing in Cortical Neurons 2025-12-17 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2512.15891 False False 2512.15891 Dynamical Mechanisms for Coordinating Long-term Working Memory Based on the Precision of Spike-timing in Cortical Neurons 2025-12-17 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2512.15891 False False 2512.14011 Accelerating MHC-II Epitope Discovery via Multi-Scale Prediction in Antigen Presentation 2025-12-16 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2512.14011 False False 2512.14019 EXAONE Path 2.5: Pathology Foundation Model with Multi-Omics Alignment 2025-12-16 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2512.14019 False False 2512.14055 When many noisy genes optimize information flow 2025-12-16 physics.bio-ph;q-bio.MN q-bio.MN https://arxiv.org/abs/2512.14055 False False 2512.14171 Spatio-temporal Moran dynamics in continuous media 2025-12-16 math.MP;physics.math-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2512.14171 False False 2512.14359 Temporal interference stimulation for deep brain neuromodulation in humans 2025-12-16 cs.SY;eess.SY;q-bio.NC q-bio.NC https://arxiv.org/abs/2512.14359 False False 2512.14461 AnySleep: a channel-agnostic deep learning system for high-resolution sleep staging in multi-center cohorts 2025-12-16 cs.LG;eess.SP;q-bio.QM q-bio.QM https://arxiv.org/abs/2512.14461 False False 2512.14506 Linguists should learn to love speech-based deep learning models 2025-12-16 cs.CL;cs.SD;eess.AS;q-bio.NC q-bio.NC https://arxiv.org/abs/2512.14506 False False 2512.14160 Forecasting Excessive Anesthesia Depth Using EEG α-Spindle Dynamics and Machine Learning 2025-12-16 q-bio.NC q-bio.NC https://arxiv.org/abs/2512.14160 False False 2512.22158 Pseudo-biodiversity effects across scales 2025-12-16 q-bio.PE q-bio.PE https://arxiv.org/abs/2512.22158 False False 2512.22160 On the comparison of models and experiments in the study of DNA open states: the problem of degrees of freedom 2025-12-16 physics.other;q-bio.BM q-bio.BM https://arxiv.org/abs/2512.22160 False False 2512.14461 AnySleep: a channel-agnostic deep learning system for high-resolution sleep staging in multi-center cohorts 2025-12-16 cs.LG;eess.SP;q-bio.QM q-bio.QM https://arxiv.org/abs/2512.14461 False False 2512.14461 AnySleep: a channel-agnostic deep learning system for high-resolution sleep staging in multi-center cohorts 2025-12-16 cs.LG;eess.SP;q-bio.QM q-bio.QM https://arxiv.org/abs/2512.14461 False False 2512.14171 Spatiotemporal Moran dynamics in continuous media 2025-12-16 math.MP;physics.math-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2512.14171 False False 2512.14171 Spatiotemporal Moran dynamics in continuous media 2025-12-16 math.MP;physics.math-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2512.14171 False False 2512.12969 Binary normal networks without near reticulations can be reconstructed from their rooted triples 2025-12-15 math.CO;q-bio.PE q-bio.PE https://arxiv.org/abs/2512.12969 False False 2512.12974 Cycles Communities from the Perspective of Dendrograms and Gradient Sampling 2025-12-15 cs.CG;q-bio.QM;stat.ML q-bio.QM https://arxiv.org/abs/2512.12974 False False 2512.13010 Deep Learning-Driven Inversion Framework for Shear Modulus Estimation in Magnetic Resonance Elastography (DIME) 2025-12-15 cs.LG;q-bio.TO q-bio.TO https://arxiv.org/abs/2512.13010 False False 2512.13084 FlowClass.jl: Classifying Dynamical Systems by Structural Properties in Julia 2025-12-15 math.DS;q-bio.CB q-bio.CB https://arxiv.org/abs/2512.13084 False False 2512.13116 Vertex Model Mechanics Explain the Emergence of Centroidal Voronoi Tiling in Epithelia 2025-12-15 physics.soft;q-bio.TO q-bio.TO https://arxiv.org/abs/2512.13116 False False 2512.13156 Ecological interactions and spatial dynamics in microbial aggregates: A novel modelling framework 2025-12-15 q-bio.PE q-bio.PE https://arxiv.org/abs/2512.13156 False False 2512.13347 Stable equilibria in the Lotka-Volterra equations 2025-12-15 math.DS;q-bio.PE q-bio.PE https://arxiv.org/abs/2512.13347 False False 2512.13455 Nondimensionalization is more science than art 2025-12-15 math.AC;math.DS;q-bio.QM q-bio.QM https://arxiv.org/abs/2512.13455 False False 2512.13517 A Deep Learning Model of Mental Rotation Informed by Interactive VR Experiments 2025-12-15 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2512.13517 False False 2512.13539 Altered oscillatory brain networks during emotional face processing in ADHD: an eLORETA and functional ICA study 2025-12-15 q-bio.NC q-bio.NC https://arxiv.org/abs/2512.13539 False False 2512.13052 Macular: a multi-scale simulation platform for the retina and the primary visual system 2025-12-15 physics.comp-ph;q-bio.NC q-bio.NC https://arxiv.org/abs/2512.13052 False False 2512.13759 An Improved Inverse Method for Estimating Disease Transmission Rates in Low-Prevalence Epidemics 2025-12-15 q-bio.PE q-bio.PE https://arxiv.org/abs/2512.13759 False False 2512.13859 Neuromodulation-inspired gated associative memory networks:extended memory retrieval and emergent multistability 2025-12-15 physics.stat-mech;q-bio.NC q-bio.NC https://arxiv.org/abs/2512.13859 False False 2512.13927 A Complete Guide to Spherical Equivariant Graph Transformers 2025-12-15 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2512.13927 False False 2512.13935 Informing Acquisition Functions via Foundation Models for Molecular Discovery 2025-12-15 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2512.13935 False False 2512.13441 Large language models are not about natural language 2025-12-15 cs.CL;q-bio.NC q-bio.NC https://arxiv.org/abs/2512.13441 False False 2512.13347 Stable equilibria in the Lotka-Volterra equations 2025-12-15 math.DS;q-bio.PE q-bio.PE https://arxiv.org/abs/2512.13347 False False 2512.13347 Stable equilibria in the Lotka-Volterra equations 2025-12-15 math.DS;q-bio.PE q-bio.PE https://arxiv.org/abs/2512.13347 False False 2512.13517 A Deep Learning Model of Mental Rotation Informed by Interactive VR Experiments 2025-12-15 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2512.13517 False False 2512.13517 A Deep Learning Model of Mental Rotation Informed by Interactive VR Experiments 2025-12-15 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2512.13517 False False 2512.12558 Pattern Formation Beyond Turing: Physical Principles of Mass-Conserving Reaction--Diffusion Systems 2025-12-14 physics.PS;physics.bio-ph;physics.soft;q-bio.SC q-bio.SC https://arxiv.org/abs/2512.12558 False False 2512.12577 Dual-Model Framework for CHIKV Transmission Modeling: ODE and Petri Net Analysis of the 2025 Foshan Outbreak 2025-12-14 q-bio.PE q-bio.PE https://arxiv.org/abs/2512.12577 False False 2512.12709 Investigating High-Order Behaviors in Multivariate Cardiovascular Interactions via Nonlinear Prediction and Information-Theoretic Tools 2025-12-14 physics.data-an;q-bio.QM q-bio.QM https://arxiv.org/abs/2512.12709 False False 2512.12881 Unsupervised learning of multiscale switching dynamical system models from multimodal neural data 2025-12-14 cs.LG;q-bio.NC;stat.ML q-bio.NC https://arxiv.org/abs/2512.12881 False False 2512.12767 Random matrix theory of sparse neuronal networks with heterogeneous timescales 2025-12-14 cs.LG;math.PR;physics.dis-nn;physics.hep-th;q-bio.NC q-bio.NC https://arxiv.org/abs/2512.12767 False False 2512.12802 A Disproof of Large Language Model Consciousness: The Necessity of Continual Learning for Consciousness 2025-12-14 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2512.12802 False False 2512.12113 Prediction of PLX-4720 Sensitivity in Cancer Cell Lines through Multi-Omics Integration and Attention-Based Fusion Modeling 2025-12-13 q-bio.GN q-bio.GN https://arxiv.org/abs/2512.12113 False False 2512.12134 Modeling Dabrafenib Response Using Multi-Omics Modality Fusion and Protein Network Embeddings Based on Graph Convolutional Networks 2025-12-13 cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2512.12134 False False 2512.12135 BaRISTA: Brain Scale Informed Spatiotemporal Representation of Human Intracranial Neural Activity 2025-12-13 cs.AI;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2512.12135 False False 2512.12184 DCAF-Net: Dual-Channel Attentive Fusion Network for Lower Limb Motion Intention Prediction in Stroke Rehabilitation Exoskeletons 2025-12-13 cs.HC;q-bio.QM q-bio.QM https://arxiv.org/abs/2512.12184 False False 2512.12198 MolGuidance: Advanced Guidance Strategies for Conditional Molecular Generation with Flow Matching 2025-12-13 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2512.12198 False False 2512.12221 Scalable branch-and-bound model selection with non-monotonic criteria including AIC, BIC and Mallows's $\mathit{C_p}$ 2025-12-13 q-bio.QM;stat.ME;stat.ML q-bio.QM https://arxiv.org/abs/2512.12221 False False 2512.12272 Accurate de novo sequencing of the modified proteome with OmniNovo 2025-12-13 cs.AI;q-bio.QM q-bio.QM https://arxiv.org/abs/2512.12272 False False 2512.12388 Modeling the Prey-Predator Dynamics of Habu Snakes and Mongooses Leading to Ecological Disaster on Amami Oshima Island in Japan 2025-12-13 math.DS;q-bio.PE q-bio.PE https://arxiv.org/abs/2512.12388 False False 2512.12406 Morphogenesis of bacterial colonies in liquid crystalline environments 2025-12-13 physics.bio-ph;physics.flu-dyn;physics.mtrl-sci;physics.soft;q-bio.CB q-bio.CB https://arxiv.org/abs/2512.12406 False False 2512.12461 Cross-Modal Representational Knowledge Distillation for Enhanced Spike-Informed LFP Modeling 2025-12-13 cs.AI;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2512.12461 False False 2512.12462 Dynamical modeling of nonlinear latent factors in multiscale neural activity with real-time inference 2025-12-13 cs.AI;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2512.12462 False False 2512.12467 Reduced rank regression for neural communication: a tutorial for neuroscientists 2025-12-13 q-bio.NC q-bio.NC https://arxiv.org/abs/2512.12467 False False 2512.13724 Graph AI generates neurological hypotheses validated in molecular, organoid, and clinical systems 2025-12-13 cs.AI;q-bio.NC;q-bio.QM q-bio.NC https://arxiv.org/abs/2512.13724 False False 2512.14750 Multiscale Cross-Modal Mapping of Molecular, Pathologic, and Radiologic Phenotypes in Lipid-Deficient Clear Cell Renal CellCarcinoma 2025-12-13 cs.AI;q-bio.QM q-bio.QM https://arxiv.org/abs/2512.14750 False False 2512.12101 AI-Augmented Pollen Recognition in Optical and Holographic Microscopy for Veterinary Imaging 2025-12-13 cs.CV;cs.LG;q-bio.QM;stat.ML q-bio.QM https://arxiv.org/abs/2512.12101 False False 2512.11244 Model Reduction of Multicellular Communication Systems via Singular Perturbation: Sender Receiver Systems 2025-12-12 cs.SY;eess.SY;q-bio.BM q-bio.BM https://arxiv.org/abs/2512.11244 False False 2512.11384 Results for Global Attractivity of Interior Equilibrium Points for Lotka-Volterra Systems 2025-12-12 cs.SY;eess.SY;math.DS;math.OC;q-bio.PE q-bio.PE https://arxiv.org/abs/2512.11384 False False 2512.11412 Task-Specific Sparse Feature Masks for Molecular Toxicity Prediction with Chemical Language Models 2025-12-12 cs.AI;cs.CE;cs.CL;cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2512.11412 False False 2512.11413 Stability and bifurcations of a minimal model for the effect of PrEP-related risk compensation in epidemics of sexually transmitted infections 2025-12-12 math.DS;q-bio.PE q-bio.PE https://arxiv.org/abs/2512.11413 False False 2512.11454 Optimizing infectious disease mitigation under dynamic conditions 2025-12-12 math.OC;q-bio.PE q-bio.PE https://arxiv.org/abs/2512.11454 False False 2512.11495 Mechanisms of thrombin inhibition by protein S and the TFPIα-fVshort-protein S complex 2025-12-12 q-bio.MN;q-bio.TO q-bio.MN https://arxiv.org/abs/2512.11495 False False 2512.11511 DREAM-B3P: Dual-Stream Transformer Network Enhanced by Feedback Diffusion Model for Blood-Brain Barrier Penetrating Peptide Prediction 2025-12-12 q-bio.QM q-bio.QM https://arxiv.org/abs/2512.11511 False False 2512.11738 Multiscale Causal Geometric Deep Learning for Modeling Brain Structure 2025-12-12 q-bio.NC q-bio.NC https://arxiv.org/abs/2512.11738 False False 2512.11927 Gene regulatory network inference algorithm based on spectral signed directed graph convolution 2025-12-12 cs.AI;q-bio.MN q-bio.MN https://arxiv.org/abs/2512.11927 False False 2512.11936 GNN-Based Deep Surrogate Modeling of Knee Contact Mechanics: Generalizing Neuromuscular Control Patterns Across Subjects 2025-12-12 q-bio.QM q-bio.QM https://arxiv.org/abs/2512.11936 False False 2512.14743 The Role of Affect and Priors in the Generation of Hallucinations in Early Psychosis 2025-12-12 q-bio.NC q-bio.NC https://arxiv.org/abs/2512.14743 False False 2512.12052 An algorithm to align a chain of sequences to paths in a pangenome graph 2025-12-12 q-bio.GN q-bio.GN https://arxiv.org/abs/2512.12052 False False 2512.11693 Algorithms for Reconstructing B Cell Lineages in the Presence of Context-Dependent Somatic Hypermutation 2025-12-12 q-bio.PE;stat.CO;stat.ME q-bio.PE https://arxiv.org/abs/2512.11693 False False 2512.11651 Nano-engineered surface enhanced Raman spectroscopy substrates for probing tissue-material interactions 2025-12-12 physics.mtrl-sci;q-bio.TO q-bio.TO https://arxiv.org/abs/2512.11651 False False 2512.11582 Brain-Semantoks: Learning Semantic Tokens of Brain Dynamics with a Self-Distilled Foundation Model 2025-12-12 cs.CV;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2512.11582 False False 2512.11605 Enhancing Morpho-Kinematic analysis for Plant Water Stress Classification through Leaf Movements 2025-12-12 q-bio.QM q-bio.QM https://arxiv.org/abs/2512.11605 False False 2512.10515 UNAAGI: Atom-Level Diffusion for Generating Non-Canonical Amino Acid Substitutions 2025-12-11 q-bio.BM q-bio.BM https://arxiv.org/abs/2512.10515 False False 2512.10525 Parallel Neuron Groups in the Drosophila Brain 2025-12-11 q-bio.NC q-bio.NC https://arxiv.org/abs/2512.10525 False False 2512.10708 Saturation-Based Atom Provenance Tracing in Chemical Reaction Networks 2025-12-11 cs.DM;q-bio.MN q-bio.MN https://arxiv.org/abs/2512.10708 False False 2512.10834 Allometric scaling of brain activity explained by avalanche criticality 2025-12-11 q-bio.NC q-bio.NC https://arxiv.org/abs/2512.10834 False False 2512.10898 Trimming to coexistence: How dispersal strategies should be accounted for in resource management 2025-12-11 q-bio.PE q-bio.PE https://arxiv.org/abs/2512.10898 False False 2512.10588 Why a chloroplast needs its own genome tethered to the thylakoid membrane -- Co-location for Redox Regulation 2025-12-11 q-bio.MN q-bio.MN https://arxiv.org/abs/2512.10588 False False 2512.10612 Coupling opinion dynamics and epidemiology 2025-12-11 math.DS;physics.soc-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2512.10612 False False 2512.10844 Modeling, Segmenting and Statistics of Transient Spindles via Two-Dimensional Ornstein-Uhlenbeck Dynamics 2025-12-11 math.SP;q-bio.NC q-bio.NC https://arxiv.org/abs/2512.10844 False False 2512.10279 Computing Evolutionarily Stable Strategies in Imperfect-Information Games 2025-12-11 cs.AI;cs.GT;cs.MA;econ.TH;q-bio.PE q-bio.PE https://arxiv.org/abs/2512.10279 False False 2512.11075 Fast, accurate measurement of the worker populations of honey bee colonies using deep learning 2025-12-11 cs.AI;q-bio.QM q-bio.QM https://arxiv.org/abs/2512.11075 False False 2512.11101 Agave villalobosii (sección Ditepalae, Agavaceae), una especie nueva de la meseta central Mexicana de aguascalientes y zacatecas 2025-12-11 q-bio.PE;q-bio.QM q-bio.PE https://arxiv.org/abs/2512.11101 False False 2512.11164 Mixed birth-death and death-birth updating in structured populations 2025-12-11 q-bio.PE q-bio.PE https://arxiv.org/abs/2512.11164 False False 2512.11180 Optimal Protected Area Design for Allee Effect Mitigation in Spatial Predator-Prey Systems 2025-12-11 q-bio.PE q-bio.PE https://arxiv.org/abs/2512.11180 False False 2512.10309 Tracking large chemical reaction networks and rare events by neural networks 2025-12-11 cs.LG;physics.bio-ph;q-bio.MN q-bio.MN https://arxiv.org/abs/2512.10309 False False 2512.13718 Ecological Management of Wild Oat (Avena fatua L.) in Winter Wheat: Modeling Yield Loss and Determination of Economic Thresholds under Varying Crop Densities 2025-12-11 q-bio.TO q-bio.TO https://arxiv.org/abs/2512.13718 False False 2512.13720 Absement: Quantitative Assessment of Metabolic Cost during Quasi-Isometric Muscle Loading 2025-12-11 physics.bio-ph;q-bio.QM q-bio.QM https://arxiv.org/abs/2512.13720 False False 2512.10331 Curvature-Weighted Contact Networks: Spectral Reduction and Global Stability in a Markovian SIR Model 2025-12-11 math.DS;math.PR;q-bio.PE q-bio.PE https://arxiv.org/abs/2512.10331 False False 2512.11136 Heuristic model on the origin of the homochirality of life 2025-12-11 q-bio.PE q-bio.PE https://arxiv.org/abs/2512.11136 False False 2512.11164 Mixed updating in structured populations 2025-12-11 q-bio.PE q-bio.PE https://arxiv.org/abs/2512.11164 False False 2512.10834 Allometric scaling of brain activity explained by avalanche criticality 2025-12-11 q-bio.NC q-bio.NC https://arxiv.org/abs/2512.10834 False False 2512.10834 Allometric scaling of brain activity explained by avalanche criticality 2025-12-11 q-bio.NC q-bio.NC https://arxiv.org/abs/2512.10834 False False 2512.10279 Computing Evolutionarily Stable Strategies in Imperfect-Information Games 2025-12-11 cs.AI;cs.GT;cs.MA;econ.TH;q-bio.PE q-bio.PE https://arxiv.org/abs/2512.10279 False False 2512.10279 Computing Evolutionarily Stable Strategies in Imperfect-Information Games 2025-12-11 cs.AI;cs.GT;cs.MA;econ.TH;q-bio.PE q-bio.PE https://arxiv.org/abs/2512.10279 False False 2512.10279 Computing Evolutionarily Stable Strategies in Imperfect-Information Games 2025-12-11 cs.AI;cs.GT;cs.MA;econ.TH;q-bio.PE q-bio.PE https://arxiv.org/abs/2512.10279 False False 2512.10279 Computing Evolutionarily Stable Strategies in Imperfect-Information Games 2025-12-11 cs.AI;cs.GT;cs.MA;econ.TH;q-bio.PE q-bio.PE https://arxiv.org/abs/2512.10279 False False 2512.10279 Computing Evolutionarily Stable Strategies in Imperfect-Information Games 2025-12-11 cs.AI;cs.GT;cs.MA;econ.TH;q-bio.PE q-bio.PE https://arxiv.org/abs/2512.10279 False False 2512.10279 Computing Evolutionarily Stable Strategies in Imperfect-Information Games 2025-12-11 cs.AI;cs.GT;cs.MA;econ.TH;q-bio.PE q-bio.PE https://arxiv.org/abs/2512.10279 False False 2512.10279 Computing Evolutionarily Stable Strategies in Imperfect-Information Games 2025-12-11 cs.AI;cs.GT;cs.MA;econ.TH;q-bio.PE q-bio.PE https://arxiv.org/abs/2512.10279 False False 2512.10279 Computing Evolutionarily Stable Strategies in Imperfect-Information Games 2025-12-11 cs.AI;cs.GT;cs.MA;econ.TH;q-bio.PE q-bio.PE https://arxiv.org/abs/2512.10279 False False 2512.13720 Absement: Quantitative Assessment of Metabolic Cost during Quasi-Isometric Muscle Loading 2025-12-11 physics.bio-ph;q-bio.QM q-bio.QM https://arxiv.org/abs/2512.13720 False False 2512.13720 Absement: Quantitative Assessment of Metabolic Cost during Quasi-Isometric Muscle Loading 2025-12-11 physics.bio-ph;q-bio.QM q-bio.QM https://arxiv.org/abs/2512.13720 False False 2512.09259 MoDaH achieves rate optimal batch correction 2025-12-10 math.ST;q-bio.GN;stat.ME;stat.TH q-bio.GN https://arxiv.org/abs/2512.09259 False False 2512.09351 The Third Visual Pathway for Social Perception 2025-12-10 q-bio.NC q-bio.NC https://arxiv.org/abs/2512.09351 False False 2512.09502 Scalable Construction of Spiking Neural Networks using up to thousands of GPUs 2025-12-10 cs.DC;cs.NE;physics.comp-ph;q-bio.NC q-bio.NC https://arxiv.org/abs/2512.09502 False False 2512.09524 NeuroSketch: An Effective Framework for Neural Decoding via Systematic Architectural Optimization 2025-12-10 cs.AI;cs.LG;eess.SP;q-bio.NC q-bio.NC https://arxiv.org/abs/2512.09524 False False 2512.09366 Meta-learning three-factor plasticity rules for structured credit assignment with sparse feedback 2025-12-10 cs.LG;physics.bio-ph;physics.dis-nn;q-bio.NC q-bio.NC https://arxiv.org/abs/2512.09366 False False 2512.09761 Prefrontal scaling of reward prediction error readout gates reinforcement-derived adaptive behavior in primates 2025-12-10 q-bio.NC q-bio.NC https://arxiv.org/abs/2512.09761 False False 2512.09964 Development of an Agentic AI Model for NGS Downstream Analysis Targeting Researchers with Limited Biological Background 2025-12-10 q-bio.GN q-bio.GN https://arxiv.org/abs/2512.09964 False False 2512.10048 In silico modelling of changes in spinal cord blood flow after endovascular aortic aneurysm repair 2025-12-10 q-bio.TO q-bio.TO https://arxiv.org/abs/2512.10048 False False 2512.10147 Murmur2Vec: A Hashing Based Solution For Embedding Generation Of COVID-19 Spike Sequences 2025-12-10 cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2512.10147 False False 2512.10995 Boosted Random Forests for Predicting Treatment Failure of Chemotherapy Regimens 2025-12-10 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2512.10995 False False 2512.11000 Unambiguous Representations in Neural Networks: An Information-Theoretic Approach to Intentionality 2025-12-10 cs.AI;cs.NE;q-bio.NC q-bio.NC https://arxiv.org/abs/2512.11000 False False 2512.11003 Global stability of epidemic models with uniform susceptibility 2025-12-10 math.DS;q-bio.PE q-bio.PE https://arxiv.org/abs/2512.11003 False False 2512.10011 Spatial Spiking Neural Networks Enable Efficient and Robust Temporal Computation 2025-12-10 cs.NE;q-bio.NC q-bio.NC https://arxiv.org/abs/2512.10011 False False 2512.10115 Decoding How Proteins Fold 2025-12-10 q-bio.BM q-bio.BM https://arxiv.org/abs/2512.10115 False False 2512.09502 Scalable Construction of Spiking Neural Networks using up to thousands of GPUs 2025-12-10 cs.DC;cs.NE;physics.comp-ph;q-bio.NC q-bio.NC https://arxiv.org/abs/2512.09502 False False 2512.09502 Scalable Construction of Spiking Neural Networks using up to thousands of GPUs 2025-12-10 cs.DC;cs.NE;physics.comp-ph;q-bio.NC q-bio.NC https://arxiv.org/abs/2512.09502 False False 2512.11000 Unambiguous Representations in Neural Networks: An Information-Theoretic Approach to Intentionality 2025-12-10 cs.AI;cs.NE;q-bio.NC q-bio.NC https://arxiv.org/abs/2512.11000 False False 2512.08175 needLR: Long-read structural variant annotation with population-scale frequency estimation 2025-12-09 q-bio.GN q-bio.GN https://arxiv.org/abs/2512.08175 False False 2512.08202 Spatially-extended Flow Phixer (SpeF-Phixer): A Spatially Extended $φ$-Mixing Framework for Gene Regulatory Causal Inference in Spatial Gene Field 2025-12-09 q-bio.QM q-bio.QM https://arxiv.org/abs/2512.08202 False False 2512.08224 Frequency Locking to Environmental Forcing Suppresses Oscillatory Extinction in Phage-Bacteria Interactions 2025-12-09 physics.CD;physics.bio-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2512.08224 False False 2512.08226 ImmunoNX: a robust bioinformatics workflow to support personalized neoantigen vaccine trials 2025-12-09 q-bio.GN q-bio.GN https://arxiv.org/abs/2512.08226 False False 2512.08355 Joint economic and epidemiological modelling of alternative pandemic response strategies 2025-12-09 physics.soc-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2512.08355 False False 2512.08367 Integrating Coarse-Grained Simulations and Deep Learning to Unveil Entropy-Driven dsRNA Unwinding by DDX3X 2025-12-09 physics.soft;q-bio.BM q-bio.BM https://arxiv.org/abs/2512.08367 False False 2512.08508 Fused Gromov-Wasserstein Contrastive Learning for Effective Enzyme-Reaction Screening 2025-12-09 cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2512.08508 False False 2512.08660 Flow-Based Modelling of Population Dynamics with Consecutive Continuous Mutations 2025-12-09 math.DS;q-bio.PE q-bio.PE https://arxiv.org/abs/2512.08660 False False 2512.08704 Sleep effects on brain, cognition, and mental health during adolescence are mediated by the glymphatic system 2025-12-09 q-bio.NC;q-bio.PE q-bio.NC https://arxiv.org/abs/2512.08704 False False 2512.08732 Neural Ordinary Differential Equations for Simulating Metabolic Pathway Dynamics from Time-Series Multiomics Data 2025-12-09 cs.LG;q-bio.SC q-bio.SC https://arxiv.org/abs/2512.08732 False False 2512.08762 Resource and population dynamics in an agent-environment interaction model 2025-12-09 physics.bio-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2512.08762 False False 2512.08783 Dynamical compatibility for finite and infinite population models used in genetics 2025-12-09 q-bio.PE q-bio.PE https://arxiv.org/abs/2512.08783 False False 2512.08815 Multi state neurons 2025-12-09 q-bio.NC q-bio.NC https://arxiv.org/abs/2512.08815 False False 2512.08842 A mathematical model of \textit{Culex} population abundance and the impact of vector control interventions in a patchy environment 2025-12-09 physics.bio-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2512.08842 False False 2512.09145 Inhomogeneous Branching Random Walks: Incorporating Genealogy and Density Effects 2025-12-09 math.PR;q-bio.PE q-bio.PE https://arxiv.org/abs/2512.09145 False False 2512.09152 Understanding temperature tuning in energy-based models 2025-12-09 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2512.09152 False False 2512.09158 Riemannian vs. Euclidean Representation of Gait Kinematics: A Comparative Analysis 2025-12-09 q-bio.QM q-bio.QM https://arxiv.org/abs/2512.09158 False False 2512.10991 MolSculpt: Sculpting 3D Molecular Geometries from Chemical Syntax 2025-12-09 cs.AI;cs.LG;physics.chem-ph;q-bio.QM q-bio.QM https://arxiv.org/abs/2512.10991 False False 2512.09003 Digital Modeling of Spatial Pathway Activity from Histology Reveals Tumor Microenvironment Heterogeneity 2025-12-09 cs.AI;q-bio.QM q-bio.QM https://arxiv.org/abs/2512.09003 False False 2512.17930 CytoDINO: Risk-Aware and Biologically-Informed Adaptation of DINOv3 for Bone Marrow Cytomorphology 2025-12-09 cs.CV;eess.IV;q-bio.OT;q-bio.QM q-bio.QM https://arxiv.org/abs/2512.17930 False False 2512.08589 Automated Pollen Recognition in Optical and Holographic Microscopy Images 2025-12-09 cs.CV;cs.LG;q-bio.QM;stat.ML q-bio.QM https://arxiv.org/abs/2512.08589 False False 2512.09003 Digital Modeling of Spatial Pathway Activity from Histology Reveals Tumor Microenvironment Heterogeneity 2025-12-09 cs.AI;q-bio.QM q-bio.QM https://arxiv.org/abs/2512.09003 False False 2512.08508 Multi-Alignment Contrastive Learning for Enzyme--Reaction Retrieval 2025-12-09 cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2512.08508 False False 2512.08508 Multi-Alignment Contrastive Learning for Enzyme--Reaction Retrieval 2025-12-09 cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2512.08508 False False 2512.08355 Joint economic and epidemiological modelling of alternative pandemic response strategies 2025-12-09 physics.soc-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2512.08355 False False 2512.08355 Joint economic and epidemiological modelling of alternative pandemic response strategies 2025-12-09 physics.soc-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2512.08355 False False 2512.08224 Frequency Locking to Environmental Forcing Suppresses Oscillatory Extinction in Phage-Bacteria Interactions 2025-12-09 physics.CD;physics.bio-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2512.08224 False False 2512.08224 Frequency Locking to Environmental Forcing Suppresses Oscillatory Extinction in Phage-Bacteria Interactions 2025-12-09 physics.CD;physics.bio-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2512.08224 False False 2512.08367 ATP-Independent Entropy-Driven dsRNA Unwinding by DDX3X Revealed by Coarse-Grained Simulations and Deep Learning 2025-12-09 physics.soft;q-bio.BM q-bio.BM https://arxiv.org/abs/2512.08367 False False 2512.08367 ATP-Independent Entropy-Driven dsRNA Unwinding by DDX3X Revealed by Coarse-Grained Simulations and Deep Learning 2025-12-09 physics.soft;q-bio.BM q-bio.BM https://arxiv.org/abs/2512.08367 False False 2512.08783 Dynamical compatibility for finite and infinite population models used in genetics 2025-12-09 q-bio.PE q-bio.PE https://arxiv.org/abs/2512.08783 False False 2512.08783 Dynamical compatibility for finite and infinite population models used in genetics 2025-12-09 q-bio.PE q-bio.PE https://arxiv.org/abs/2512.08783 False False 2512.07064 Self-Supervised Learning on Molecular Graphs: A Systematic Investigation of Masking Design 2025-12-08 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2512.07064 False False 2512.07080 Big shells, bigger data: cohort analysis of Chesapeake Bay Crassostrea virginica reefs 2025-12-08 q-bio.QM;stat.AP;stat.CO q-bio.QM https://arxiv.org/abs/2512.07080 False False 2512.07113 PlantBiMoE: A Bidirectional Foundation Model with SparseMoE for Plant Genomes 2025-12-08 cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2512.07113 False False 2512.07116 Structure-conditioned input-to-state stability for layer-by-layer molecular computations in parallel chemical reaction networks 2025-12-08 math.DS;q-bio.MN q-bio.MN https://arxiv.org/abs/2512.07116 False False 2512.07153 A Structured Review of Fixed and Multimodal Sensing Techniques for Bat Monitoring 2025-12-08 cs.SY;eess.SY;q-bio.QM q-bio.QM https://arxiv.org/abs/2512.07153 False False 2512.07413 The emergence and diversification of dog morphology 2025-12-08 q-bio.PE q-bio.PE https://arxiv.org/abs/2512.07413 False False 2512.07772 Universal bounds on entropy production from fluctuating coarse-grained trajectories 2025-12-08 physics.stat-mech;q-bio.QM q-bio.QM https://arxiv.org/abs/2512.07772 False False 2512.07907 Harmonizing Community Science Datasets to Model Highly Pathogenic Avian Influenza (HPAI) in Birds in the Subantarctic 2025-12-08 cs.AI;q-bio.PE q-bio.PE https://arxiv.org/abs/2512.07907 False False 2512.07912 A Semi-Supervised Inf-Net Framework for CT-Based Lung Nodule Analysis with a Conceptual Extension Toward Genomic Integration 2025-12-08 q-bio.QM q-bio.QM https://arxiv.org/abs/2512.07912 False False 2512.08024 Coarse-graining and stochastic oscillations in a phenomenological model of cell-size homeostasis 2025-12-08 q-bio.CB q-bio.CB https://arxiv.org/abs/2512.08024 False False 2512.08087 Subcellular proteome niche discovery using semi-supervised functional clustering 2025-12-08 q-bio.QM;q-bio.SC;stat.AP q-bio.QM https://arxiv.org/abs/2512.08087 False False 2512.07692 Mapping Still Matters: Coarse-Graining with Machine Learning Potentials 2025-12-08 physics.chem-ph;q-bio.BM q-bio.BM https://arxiv.org/abs/2512.07692 False False 2512.08074 Understanding the temperature response of biological systems: Part I -- Phenomenological descriptions and microscopic models 2025-12-08 physics.AO;physics.bio-ph;physics.soft;physics.stat-mech;q-bio.QM q-bio.QM https://arxiv.org/abs/2512.08074 False False 2512.08074 Understanding the temperature response of biological systems: Part I -- Phenomenological descriptions and microscopic models 2025-12-08 physics.AO;physics.bio-ph;physics.soft;physics.stat-mech;q-bio.QM q-bio.QM https://arxiv.org/abs/2512.08074 False False 2512.06808 Leveraging Pre-trained Neural Network Models for the Classification of Tumor Cells Analyzed by Label-free Phase Holotomographic Microscopy 2025-12-07 physics.app-ph;physics.bio-ph;physics.optics;q-bio.CB q-bio.CB https://arxiv.org/abs/2512.06808 False False 2512.06934 Visual Function Profiles via Multi-Path Aggregation Reveal Neuron-Level Responses in the Drosophila Brain 2025-12-07 q-bio.NC;q-bio.QM q-bio.NC https://arxiv.org/abs/2512.06934 False False 2512.06961 Self-organized criticality in complex model ecosystems 2025-12-07 physics.dis-nn;physics.stat-mech;q-bio.PE q-bio.PE https://arxiv.org/abs/2512.06961 False False 2512.09945 Fast generation of 3D flow obstacles from parametric surface models: application to cardiac valves 2025-12-07 physics.med-ph;q-bio.TO q-bio.TO https://arxiv.org/abs/2512.09945 False False 2512.10988 Mathematics of natural intelligence 2025-12-07 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2512.10988 False False 2512.06280 Assessing the Information Content of Individual Spikes in Population-Level Models of Neural Spiking Activity 2025-12-06 q-bio.NC;q-bio.QM;stat.ME q-bio.NC https://arxiv.org/abs/2512.06280 False False 2512.06294 Interpretable Neural Approximation of Stochastic Reaction Dynamics with Guaranteed Reliability 2025-12-06 cs.LG;math.PR;q-bio.MN;q-bio.QM;stat.ML q-bio.MN https://arxiv.org/abs/2512.06294 False False 2512.06492 Quantification of Planar Cortical Magnification with Optimal Transport and Topological Smoothing 2025-12-06 q-bio.NC q-bio.NC https://arxiv.org/abs/2512.06492 False False 2512.06496 PRIMRose: Insights into the Per-Residue Energy Metrics of Proteins with Double InDel Mutations using Deep Learning 2025-12-06 cs.AI;cs.LG;cs.NE;q-bio.BM;q-bio.QM q-bio.BM https://arxiv.org/abs/2512.06496 False False 2512.06502 Small Language Models Can Use Nuanced Reasoning For Health Science Research Classification: A Microbial-Oncogenesis Case Study 2025-12-06 cs.CE;q-bio.QM q-bio.QM https://arxiv.org/abs/2512.06502 False False 2512.06592 On fine-tuning Boltz-2 for protein-protein affinity prediction 2025-12-06 cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2512.06592 False False 2512.06245 How Conflict Aversion Can Enable Authoritarianism: An Evolutionary Dynamics Approach 2025-12-06 physics.AO;physics.soc-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2512.06245 False False 2512.15737 Enzyme-Substrate Complex Formation Modulates Diffusion-Driven Patterning In Metabolic Pathways 2025-12-06 q-bio.MN q-bio.MN https://arxiv.org/abs/2512.15737 False False 2512.15737 Enzyme-Substrate Complex Formation Modulates Diffusion-Driven Patterning In Metabolic Pathways 2025-12-06 q-bio.MN q-bio.MN https://arxiv.org/abs/2512.15737 False False 2512.15737 Enzyme-Substrate Complex Formation Modulates Diffusion-Driven Patterning In Metabolic Pathways 2025-12-06 q-bio.MN q-bio.MN https://arxiv.org/abs/2512.15737 False False 2512.06245 How Withheld Punishment Enables Authoritarian Persistence: An Evolutionary Dynamics Approach 2025-12-06 physics.AO;physics.soc-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2512.06245 False False 2512.06245 How Withheld Punishment Enables Authoritarian Persistence: An Evolutionary Dynamics Approach 2025-12-06 physics.AO;physics.soc-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2512.06245 False False 2512.05346 Hypothesis-Based Particle Detection for Accurate Nanoparticle Counting and Digital Diagnostics 2025-12-05 physics.comp-ph;physics.med-ph;physics.optics;q-bio.QM q-bio.QM https://arxiv.org/abs/2512.05346 False False 2512.05365 MCP-AI: Protocol-Driven Intelligence Framework for Autonomous Reasoning in Healthcare 2025-12-05 cs.AI;q-bio.QM q-bio.QM https://arxiv.org/abs/2512.05365 False False 2512.05462 Model Gateway: Model Management Platform for Model-Driven Drug Discovery 2025-12-05 cs.DC;cs.LG;cs.SE;q-bio.QM q-bio.QM https://arxiv.org/abs/2512.05462 False False 2512.05499 Tree Thinking in the Genomic Era: Unifying Models Across Cells, Populations, and Species 2025-12-05 q-bio.PE q-bio.PE https://arxiv.org/abs/2512.05499 False False 2512.05500 SSDLabeler: Realistic semi-synthetic data generation for multi-label artifact classification in EEG 2025-12-05 cs.LG;eess.SP;q-bio.NC q-bio.NC https://arxiv.org/abs/2512.05500 False False 2512.05528 Decoding Selective Auditory Attention to Musical Elements in Ecologically Valid Music Listening 2025-12-05 cs.LG;cs.SD;eess.AS;eess.SP;q-bio.NC q-bio.NC https://arxiv.org/abs/2512.05528 False False 2512.05573 Refined HLA Linkage Disequilibrium Architectures of World Populations by a Novel Allelic Correlation Measure 2025-12-05 q-bio.GN;q-bio.QM q-bio.GN https://arxiv.org/abs/2512.05573 False False 2512.05649 Physics-Guided Surrogate Modeling for Machine Learning-Driven DLD Design Optimization 2025-12-05 q-bio.QM q-bio.QM https://arxiv.org/abs/2512.05649 False False 2512.05718 Emergence of Language in the Developing Brain 2025-12-05 q-bio.NC q-bio.NC https://arxiv.org/abs/2512.05718 False False 2512.05794 Mechanistic Interpretability of Antibody Language Models Using SAEs 2025-12-05 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2512.05794 False False 2512.05856 Fluctuating Environments Favor Extreme Dormancy Strategies and Penalize Intermediate Ones 2025-12-05 physics.bio-ph;physics.stat-mech;q-bio.PE q-bio.PE https://arxiv.org/abs/2512.05856 False False 2512.05889 The Effective Reproduction Number in the Kermack-McKendrick model with age of infection and reinfection 2025-12-05 q-bio.PE q-bio.PE https://arxiv.org/abs/2512.05889 False False 2512.06134 Physics-Informed Neural Koopman Machine for Interpretable Longitudinal Personalized Alzheimer's Disease Forecasting 2025-12-05 cs.AI;cs.LG;q-bio.NC;q-bio.QM q-bio.NC https://arxiv.org/abs/2512.06134 False False 2512.06141 Synergistic Computational Approaches for Accelerated Drug Discovery: Integrating Quantum Mechanics, Statistical Thermodynamics, and Quantum Computing 2025-12-05 physics.chem-ph;physics.quant-ph;q-bio.QM q-bio.QM https://arxiv.org/abs/2512.06141 False False 2512.06181 Beyond Lux thresholds: a systematic pipeline for classifying biologically relevant light contexts from wearable data 2025-12-05 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2512.06181 False False 2512.06064 Towards smart canopies: Algorithmic design of maize canopy architectures that maximize light use efficiency 2025-12-05 q-bio.PE;q-bio.QM q-bio.PE https://arxiv.org/abs/2512.06064 False False 2512.10985 "Marti-5: A Mathematical Model of ""Self in the World"" as a First Step Toward Self-Awareness" 2025-12-05 cs.AI;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2512.10985 False False 2512.06116 Spatial Analysis for AI-segmented Histopathology Images: Methods and Implementation 2025-12-05 q-bio.QM;stat.AP q-bio.QM https://arxiv.org/abs/2512.06116 False False 2512.05731 DeeDeeExperiment: Building an infrastructure for integrating and managing omics data analysis results in R/Bioconductor 2025-12-05 q-bio.GN q-bio.GN https://arxiv.org/abs/2512.05731 False False 2512.05794 Mechanistic Interpretability of Antibody Language Models Using SAEs 2025-12-05 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2512.05794 False False 2512.05794 Mechanistic Interpretability of Antibody Language Models Using SAEs 2025-12-05 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2512.05794 False False 2512.05794 Mechanistic Interpretability of Antibody Language Models Using SAEs 2025-12-05 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2512.05794 False False 2512.05794 Mechanistic Interpretability of Antibody Language Models Using SAEs 2025-12-05 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2512.05794 False False 2512.05462 Model Gateway: Management Platform for Model-Driven Drug Discovery 2025-12-05 cs.DC;cs.LG;cs.SE;q-bio.QM q-bio.QM https://arxiv.org/abs/2512.05462 False False 2512.05462 Model Gateway: Management Platform for Model-Driven Drug Discovery 2025-12-05 cs.DC;cs.LG;cs.SE;q-bio.QM q-bio.QM https://arxiv.org/abs/2512.05462 False False 2512.04340 Collective adsorption of pheromones at the water-air interface 2025-12-04 physics.chem-ph;physics.soft;q-bio.BM q-bio.BM https://arxiv.org/abs/2512.04340 False False 2512.04427 Sedimentary models of fossil biomolecules, principles and methodological improvements 2025-12-04 q-bio.PE q-bio.PE https://arxiv.org/abs/2512.04427 False False 2512.04624 The Endocranial Cast of Khirtharia (Artiodactyla, Raoellidae) Provides New Insights into the Earliest Evolution of the Cetacean Brain 2025-12-04 q-bio.PE q-bio.PE https://arxiv.org/abs/2512.04624 False False 2512.04642 Limit cycles for speech 2025-12-04 cs.CL;q-bio.NC q-bio.NC https://arxiv.org/abs/2512.04642 False False 2512.04693 Colorings of unrooted tree-based networks and related graphs 2025-12-04 q-bio.PE q-bio.PE https://arxiv.org/abs/2512.04693 False False 2512.04937 A Systemic Pathological Network Model and Combinatorial Intervention Strategies for Alzheimer's Disease 2025-12-04 q-bio.MN q-bio.MN https://arxiv.org/abs/2512.04937 False False 2512.04869 Developing a General Personal Tutor for Education 2025-12-04 cs.AI;cs.CY;q-bio.NC q-bio.NC https://arxiv.org/abs/2512.04869 False False 2512.04989 Influence of Object Affordance on Action Language Understanding: Evidence from Dynamic Causal Modeling Analysis 2025-12-04 q-bio.NC q-bio.NC https://arxiv.org/abs/2512.04989 False False 2512.05007 Revealing stimulus-dependent dynamics through statistical complexity 2025-12-04 q-bio.NC q-bio.NC https://arxiv.org/abs/2512.05007 False False 2512.05190 Exactly Solvable Population Model with Square-Root Growth Noise and Cell-Size Regulation 2025-12-04 math.PR;physics.stat-mech;q-bio.PE q-bio.PE https://arxiv.org/abs/2512.05190 False False 2512.05208 Peakspan: Defining, Quantifying and Extending the Boundaries of Peak Productive Lifespan 2025-12-04 econ.GN;q-bio.QM;q-fin.EC q-bio.QM https://arxiv.org/abs/2512.05208 False False 2512.05245 STAR-GO: Improving Protein Function Prediction by Learning to Hierarchically Integrate Ontology-Informed Semantic Embeddings 2025-12-04 cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2512.05245 False False 2512.05247 Incorporating indel channels into average-case analysis of seed-chain-extend 2025-12-04 cs.DS;q-bio.QM q-bio.QM https://arxiv.org/abs/2512.05247 False False 2512.05252 Competition, stability, and functionality in excitatory-inhibitory neural circuits 2025-12-04 math.OC;physics.dis-nn;q-bio.NC q-bio.NC https://arxiv.org/abs/2512.05252 False False 2512.05256 Enhancing Clinical Note Generation with ICD-10, Clinical Ontology Knowledge Graphs, and Chain-of-Thought Prompting Using GPT-4 2025-12-04 cs.CL;q-bio.QM q-bio.QM https://arxiv.org/abs/2512.05256 False False 2512.05305 The Great Oxidation Event (GOE): Biogeochemical Feedback and Tipping Points 2025-12-04 physics.ao-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2512.05305 False False 2512.06021 Investigating the effect of adaptive optimal control function in epidemic dynamics: predictions and strategy evolution based on SIR/V game theoretic framework 2025-12-04 math.DS;physics.soc-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2512.06021 False False 2512.10981 Targeting the Synergistic Interaction of Pathologies in Alzheimer's Disease: Rationale and Prospects for Combination Therapy 2025-12-04 q-bio.NC q-bio.NC https://arxiv.org/abs/2512.10981 False False 2512.10982 Rosetta Stone of Neural Mass Models 2025-12-04 physics.CD;q-bio.NC q-bio.NC https://arxiv.org/abs/2512.10982 False False 2512.10983 Compartmental-reaction diffusion framework for microscale dynamics of extracellular serotonin in brain tissue 2025-12-04 q-bio.CB;q-bio.NC;q-bio.TO q-bio.CB https://arxiv.org/abs/2512.10983 False False 2512.10984 Developmental Symmetry-Loss: A Free-Energy Perspective on Brain-Inspired Invariance Learning 2025-12-04 cs.AI;cs.LG;physics.AO;q-bio.NC q-bio.NC https://arxiv.org/abs/2512.10984 False False 2512.04808 Setting up for failure: automatic discovery of the neural mechanisms of cognitive errors 2025-12-04 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2512.04808 False False 2512.04393 pHapCompass: Probabilistic Assembly and Uncertainty Quantification of Polyploid Haplotype Phase 2025-12-04 q-bio.GN;q-bio.QM q-bio.GN https://arxiv.org/abs/2512.04393 False False 2512.04393 pHapCompass: Probabilistic Assembly and Uncertainty Quantification of Polyploid Haplotype Phase 2025-12-04 q-bio.GN;q-bio.QM q-bio.GN https://arxiv.org/abs/2512.04393 False False 2512.05208 Peakspan: Defining, Quantifying and Extending the Boundaries of Peak Productive Lifespan 2025-12-04 econ.GN;q-bio.QM;q-fin.EC q-bio.QM https://arxiv.org/abs/2512.05208 False False 2512.05245 STAR-GO: Improving Protein Function Prediction by Learning to Hierarchically Integrate Ontology-Informed Semantic Embeddings 2025-12-04 cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2512.05245 False False 2512.10983 Compartmental-reaction diffusion framework for microscale dynamics of extracellular serotonin in brain tissue 2025-12-04 q-bio.CB;q-bio.NC;q-bio.TO q-bio.CB https://arxiv.org/abs/2512.10983 False False 2512.10983 Compartmental-reaction diffusion framework for microscale dynamics of extracellular serotonin in brain tissue 2025-12-04 q-bio.CB;q-bio.NC;q-bio.TO q-bio.CB https://arxiv.org/abs/2512.10983 False False 2512.05252 Competition, stability, and functionality in excitatory-inhibitory neural circuits 2025-12-04 math.OC;physics.dis-nn;q-bio.NC q-bio.NC https://arxiv.org/abs/2512.05252 False False 2512.05252 Competition, stability, and functionality in excitatory-inhibitory neural circuits 2025-12-04 math.OC;physics.dis-nn;q-bio.NC q-bio.NC https://arxiv.org/abs/2512.05252 False False 2512.10982 Rosetta Stone of Neural Mass Models 2025-12-04 physics.CD;q-bio.NC q-bio.NC https://arxiv.org/abs/2512.10982 False False 2512.10982 Rosetta Stone of Neural Mass Models 2025-12-04 physics.CD;q-bio.NC q-bio.NC https://arxiv.org/abs/2512.10982 False False 2512.05190 Exactly Solvable Population Model with Square-Root Growth Noise and Cell-Size Regulation 2025-12-04 math.PR;physics.stat-mech;q-bio.PE q-bio.PE https://arxiv.org/abs/2512.05190 False False 2512.05190 Exactly Solvable Population Model with Square-Root Growth Noise and Cell-Size Regulation 2025-12-04 math.PR;physics.stat-mech;q-bio.PE q-bio.PE https://arxiv.org/abs/2512.05190 False False 2512.04693 Colorings of unrooted tree-based networks and related graphs 2025-12-04 q-bio.PE q-bio.PE https://arxiv.org/abs/2512.04693 False False 2512.04693 Colorings of unrooted tree-based networks and related graphs 2025-12-04 q-bio.PE q-bio.PE https://arxiv.org/abs/2512.04693 False False 2512.05190 Exactly Solvable Population Model with Square-Root Growth Noise and Cell-Size Regulation 2025-12-04 math.PR;physics.stat-mech;q-bio.PE q-bio.PE https://arxiv.org/abs/2512.05190 False False 2512.05190 Exactly Solvable Population Model with Square-Root Growth Noise and Cell-Size Regulation 2025-12-04 math.PR;physics.stat-mech;q-bio.PE q-bio.PE https://arxiv.org/abs/2512.05190 False False 2512.03409 Optimal Griffiths Phase in Heterogeneous Human Brain Networks: Brain Criticality Embracing Stability and Flexibility across Individuals 2025-12-03 q-bio.NC q-bio.NC https://arxiv.org/abs/2512.03409 False False 2512.03460 Learning From Limited Data and Feedback for Cell Culture Process Monitoring: A Comparative Study 2025-12-03 cs.AI;cs.CE;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2512.03460 False False 2512.03497 Cell-cell communication inference and analysis: biological mechanisms, computational approaches, and future opportunities 2025-12-03 cs.AI;q-bio.CB;q-bio.QM q-bio.CB https://arxiv.org/abs/2512.03497 False False 2512.03585 Microclimatic variation in tropical canopies: A glimpse into the processes of community assembly in epiphytic bryophyte communities 2025-12-03 q-bio.PE q-bio.PE https://arxiv.org/abs/2512.03585 False False 2512.03784 Sleep Modulation: The Challenge of Transitioning from Open Loop to Closed Loop 2025-12-03 cs.HC;q-bio.NC q-bio.NC https://arxiv.org/abs/2512.03784 False False 2512.03866 Generating a Contact Matrix for Aged Care Settings in Australia: an agent-based model study 2025-12-03 cs.SI;q-bio.PE q-bio.PE https://arxiv.org/abs/2512.03866 False False 2512.03880 Leveraging topological data analysis to estimate bone strength from micro-CT as a surrogate for advanced imaging 2025-12-03 q-bio.QM q-bio.QM https://arxiv.org/abs/2512.03880 False False 2512.03907 Emergent Spatiotemporal Dynamics in Large-Scale Brain Networks with Next Generation Neural Mass Models 2025-12-03 q-bio.NC q-bio.NC https://arxiv.org/abs/2512.03907 False False 2512.04225 GOPHER: Optimization-based Phenotype Randomization for Genome-Wide Association Studies with Differential Privacy 2025-12-03 q-bio.QM q-bio.QM https://arxiv.org/abs/2512.04225 False False 2512.04232 Decentralized Social Media and Artificial Intelligence in Digital Public Health Monitoring 2025-12-03 cs.CY;q-bio.PE q-bio.PE https://arxiv.org/abs/2512.04232 False False 2512.04241 Covering Relations in the Poset of Combinatorial Neural Codes 2025-12-03 math.CO;q-bio.NC q-bio.NC https://arxiv.org/abs/2512.04241 False False 2512.04287 Artificial Intelligence Applications in Horizon Scanning for Infectious Diseases 2025-12-03 cs.AI;q-bio.PE q-bio.PE https://arxiv.org/abs/2512.04287 False False 2512.04311 Real-time Cricket Sorting By Sex 2025-12-03 cs.CV;q-bio.QM q-bio.QM https://arxiv.org/abs/2512.04311 False False 2512.10976 The Homological Brain: Parity Principle and Amortized Inference 2025-12-03 q-bio.NC q-bio.NC https://arxiv.org/abs/2512.10976 False False 2512.10978 Cognitive Mirrors: Exploring the Diverse Functional Roles of Attention Heads in LLM Reasoning 2025-12-03 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2512.10978 False False 2512.11837 Vision Foundry: A System for Training Foundational Vision AI Models 2025-12-03 cs.AI;cs.CV;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2512.11837 False False 2512.04310 RNNs perform task computations by dynamically warping neural representations 2025-12-03 cs.LG;math.DG;math.DS;q-bio.NC q-bio.NC https://arxiv.org/abs/2512.04310 False False 2512.03866 Generating a Contact Matrix for Aged Care Settings in Australia: an agent-based model study 2025-12-03 cs.SI;q-bio.PE q-bio.PE https://arxiv.org/abs/2512.03866 False False 2512.03497 Cell-cell Communication Inference and Analysis: Biological Mechanisms, Computational Approaches, and Future Opportunities 2025-12-03 cs.AI;q-bio.CB;q-bio.QM q-bio.CB https://arxiv.org/abs/2512.03497 False False 2512.10976 The Homological Brain: Parity Principle and Amortized Inference 2025-12-03 q-bio.NC q-bio.NC https://arxiv.org/abs/2512.10976 False False 2512.10976 The Homological Brain: Parity Principle and Amortized Inference 2025-12-03 q-bio.NC q-bio.NC https://arxiv.org/abs/2512.10976 False False 2512.02303 Training Dynamics of Learning 3D-Rotational Equivariance 2025-12-02 cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2512.02303 False False 2512.02312 Fast and Accurate Node-Age Estimation Under Fossil Calibration Uncertainty Using the Adjusted Pairwise Likelihood 2025-12-02 q-bio.PE;q-bio.QM q-bio.PE https://arxiv.org/abs/2512.02312 False False 2512.02315 Few-shot Protein Fitness Prediction via In-context Learning and Test-time Training 2025-12-02 cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2512.02315 False False 2512.02328 Molecular Embedding-Based Algorithm Selection in Protein-Ligand Docking 2025-12-02 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2512.02328 False False 2512.02471 scCluBench: Comprehensive Benchmarking of Clustering Algorithms for Single-Cell RNA Sequencing 2025-12-02 cs.AI;q-bio.GN q-bio.GN https://arxiv.org/abs/2512.02471 False False 2512.02478 Simulation and inference methods for non-Markovian stochastic biochemical reaction networks 2025-12-02 cs.NA;math.NA;q-bio.MN;stat.CO q-bio.MN https://arxiv.org/abs/2512.02478 False False 2512.02503 Individual-specific precision neuroimaging of learning-related plasticity 2025-12-02 q-bio.NC q-bio.NC https://arxiv.org/abs/2512.02503 False False 2512.02671 Translating Measures onto Mechanisms: The Cognitive Relevance of Higher-Order Information 2025-12-02 q-bio.NC q-bio.NC https://arxiv.org/abs/2512.02671 False False 2512.02719 Emergent Bayesian Behaviour and Optimal Cue Combination in LLMs 2025-12-02 cs.AI;cs.CL;cs.CV;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2512.02719 False False 2512.02419 The brain-AI convergence: Predictive and generative world models for general-purpose computation 2025-12-02 cs.AI;cs.CL;cs.NE;q-bio.NC q-bio.NC https://arxiv.org/abs/2512.02419 False False 2512.02811 Vessel Network Topology in Molecular Communication: Insights from Experiments and Theory 2025-12-02 cs.ET;q-bio.QM q-bio.QM https://arxiv.org/abs/2512.02811 False False 2512.02864 Modulation of DNA rheology by a transcription factor that forms aging microgels 2025-12-02 physics.bio-ph;physics.comp-ph;physics.other;physics.soft;q-bio.BM q-bio.BM https://arxiv.org/abs/2512.02864 False False 2512.02908 Imperfect molecular detection renormalizes apparent kinetic rates in stochastic gene regulatory networks 2025-12-02 q-bio.MN;q-bio.QM;q-bio.SC q-bio.MN https://arxiv.org/abs/2512.02908 False False 2512.02978 Rethinking Generalized BCIs: Benchmarking 340,000+ Unique Algorithmic Configurations for EEG Mental Command Decoding 2025-12-02 cs.AI;cs.HC;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2512.02978 False False 2512.03110 The BEAT-CF Causal Model: A model for guiding the design of trials and observational analyses of cystic fibrosis exacerbations 2025-12-02 cs.AI;q-bio.QM q-bio.QM https://arxiv.org/abs/2512.03110 False False 2512.03111 PanFoMa: A Lightweight Foundation Model and Benchmark for Pan-Cancer 2025-12-02 cs.AI;cs.CV;q-bio.GN q-bio.GN https://arxiv.org/abs/2512.03111 False False 2512.03122 Beyond Bayesian Inference: The Correlation Integral Likelihood Framework and Gradient Flow Methods for Deterministic Sampling 2025-12-02 q-bio.QM q-bio.QM https://arxiv.org/abs/2512.03122 False False 2512.03158 Contrastive Deep Learning for Variant Detection in Wastewater Genomic Sequencing 2025-12-02 cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2512.03158 False False 2512.03191 A Comprehensive Review of Casein Kinase 2 in Drosophila Circadian Timing and Its Biomedical Relevance 2025-12-02 q-bio.MN;q-bio.SC q-bio.MN https://arxiv.org/abs/2512.03191 False False 2512.03286 SpikGPT: A High-Accuracy and Interpretable Spiking Attention Framework for Single-Cell Annotation 2025-12-02 q-bio.GN;q-bio.QM q-bio.GN https://arxiv.org/abs/2512.03286 False False 2512.03293 Prior preferences in active inference agents: soft, hard, and goal shaping 2025-12-02 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2512.03293 False False 2512.02528 Assessment of Simulation-based Inference Methods for Stochastic Compartmental Models 2025-12-02 q-bio.QM q-bio.QM https://arxiv.org/abs/2512.02528 False False 2512.03312 Unlocking hidden biomolecular conformational landscapes in diffusion models at inference time 2025-12-02 cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2512.03312 False False 2512.02503 Individual-specific precision neuroimaging of learning-related plasticity 2025-12-02 q-bio.NC q-bio.NC https://arxiv.org/abs/2512.02503 False False 2512.02503 Individual-specific precision neuroimaging of learning-related plasticity 2025-12-02 q-bio.NC q-bio.NC https://arxiv.org/abs/2512.02503 False False 2512.02528 Assessment of Simulation-based Inference Methods for Stochastic Compartmental Models in Epidemiological Research 2025-12-02 q-bio.QM q-bio.QM https://arxiv.org/abs/2512.02528 False False 2512.02528 Assessment of Simulation-based Inference Methods for Stochastic Compartmental Models in Epidemiological Research 2025-12-02 q-bio.QM q-bio.QM https://arxiv.org/abs/2512.02528 False False 2512.02328 Molecular Embedding-Based Algorithm Selection in Protein-Ligand Docking 2025-12-02 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2512.02328 False False 2512.02328 Molecular Embedding-Based Algorithm Selection in Protein-Ligand Docking 2025-12-02 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2512.02328 False False 2512.02528 Assessment of Simulation-based Inference Methods for Stochastic Compartmental Models in Epidemiological Research 2025-12-02 q-bio.QM q-bio.QM https://arxiv.org/abs/2512.02528 False False 2512.02528 Assessment of Simulation-based Inference Methods for Stochastic Compartmental Models in Epidemiological Research 2025-12-02 q-bio.QM q-bio.QM https://arxiv.org/abs/2512.02528 False False 2512.02908 Imperfect molecular detection can renormalize apparent kinetic rates in stochastic gene regulatory networks 2025-12-02 q-bio.MN;q-bio.QM;q-bio.SC q-bio.MN https://arxiv.org/abs/2512.02908 False False 2512.02908 Imperfect molecular detection can renormalize apparent kinetic rates in stochastic gene regulatory networks 2025-12-02 q-bio.MN;q-bio.QM;q-bio.SC q-bio.MN https://arxiv.org/abs/2512.02908 False False 2512.02978 Rethinking Generalized BCIs: Benchmarking 340,000+ Unique Algorithmic Configurations for EEG Mental Command Decoding 2025-12-02 cs.AI;cs.HC;cs.LG;q-bio.NC;q-bio.QM q-bio.NC https://arxiv.org/abs/2512.02978 False False 2512.02978 Rethinking Generalized BCIs: Benchmarking 340,000+ Unique Algorithmic Configurations for EEG Mental Command Decoding 2025-12-02 cs.AI;cs.HC;cs.LG;q-bio.NC;q-bio.QM q-bio.NC https://arxiv.org/abs/2512.02978 False False 2512.02503 Individual-specific precision neuroimaging of learning-related plasticity 2025-12-02 q-bio.NC q-bio.NC https://arxiv.org/abs/2512.02503 False False 2512.02503 Individual-specific precision neuroimaging of learning-related plasticity 2025-12-02 q-bio.NC q-bio.NC https://arxiv.org/abs/2512.02503 False False 2512.01160 From Regression to Classification: Exploring the Benefits of Categorical Representations of Energy in MLIPs 2025-12-01 cs.LG;q-bio.MN q-bio.MN https://arxiv.org/abs/2512.01160 False False 2512.01199 Know Thyself by Knowing Others: Learning Neuron Identity from Population Context 2025-12-01 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2512.01199 False False 2512.01320 A Review of Wearable Sweat Monitoring Platforms: From Biomarker Detection to Signal Processing Systems 2025-12-01 q-bio.BM q-bio.BM https://arxiv.org/abs/2512.01320 False False 2512.01406 Personalized optimization of pediatric HD-tDCS for dose consistency and target engagement 2025-12-01 q-bio.NC;q-bio.QM q-bio.NC https://arxiv.org/abs/2512.01406 False False 2512.01435 Existence of two thresholds in a bistable equation with nonlocal competition 2025-12-01 math.AP;q-bio.PE q-bio.PE https://arxiv.org/abs/2512.01435 False False 2512.01462 Robustness and resilience of dynamical networks in biology and epidemiology 2025-12-01 math.MP;physics.math-ph;q-bio.QM q-bio.QM https://arxiv.org/abs/2512.01462 False False 2512.01591 Scaling and context steer LLMs along the same computational path as the human brain 2025-12-01 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2512.01591 False False 2512.01652 From Toggle to Tuning: Controlling Turing Patterns in Gene Circuits 2025-12-01 math.DS;math.MP;physics.PS;physics.bio-ph;physics.math-ph;q-bio.QM q-bio.QM https://arxiv.org/abs/2512.01652 False False 2512.01903 Realistic Transition Paths for Large Biomolecular Systems: A Langevin Bridge Approach 2025-12-01 physics.bio-ph;q-bio.BM q-bio.BM https://arxiv.org/abs/2512.01903 False False 2512.01962 A framework for disentangling spatial and visual neural representations 2025-12-01 q-bio.NC q-bio.NC https://arxiv.org/abs/2512.01962 False False 2512.01986 A robust generalizable device-agnostic deep learning model for sleep-wake determination from triaxial wrist accelerometry 2025-12-01 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2512.01986 False False 2512.02089 A Compact, Data-Logging Breath-Gas Analyzer 2025-12-01 q-bio.QM q-bio.QM https://arxiv.org/abs/2512.02089 False False 2512.02162 Mapping of Lesion Images to Somatic Mutations 2025-12-01 cs.CV;q-bio.QM q-bio.QM https://arxiv.org/abs/2512.02162 False False 2512.02204 MoRSAIK: Sequence Motif Reactor Simulation, Analysis and Inference Kit in Python 2025-12-01 physics.bio-ph;q-bio.BM;q-bio.MN;q-bio.PE q-bio.BM https://arxiv.org/abs/2512.02204 False False 2512.02223 On the Approximation of Phylogenetic Distance Functions by Artificial Neural Networks 2025-12-01 cs.LG;q-bio.PE q-bio.PE https://arxiv.org/abs/2512.02223 False False 2512.02260 EcoCast: A Spatio-Temporal Model for Continual Biodiversity and Climate Risk Forecasting 2025-12-01 q-bio.QM;stat.ML q-bio.QM https://arxiv.org/abs/2512.02260 False False 2512.01976 Consistent Synthetic Sequences Unlock Structural Diversity in Fully Atomistic De Novo Protein Design 2025-12-01 q-bio.BM q-bio.BM https://arxiv.org/abs/2512.01976 False False 2512.10972 Quantifying the Dynamics of Consciousness using Hierarchical Integration, Organised Complexity and Metastability 2025-12-01 q-bio.NC q-bio.NC https://arxiv.org/abs/2512.10972 False False 2512.01417 Active Force Dynamics in Red Blood Cells Under Non-Invasive Optical Tweezers 2025-12-01 physics.bio-ph;q-bio.BM;q-bio.CB;q-bio.SC q-bio.BM https://arxiv.org/abs/2512.01417 False False 2512.01885 TransientTrack: Advanced Multi-Object Tracking and Classification of Cancer Cells with Transient Fluorescent Signals 2025-12-01 cs.CV;q-bio.CB;q-bio.QM q-bio.CB https://arxiv.org/abs/2512.01885 False False 2512.03098 An AI Implementation Science Study to Improve Trustworthy Data in a Large Healthcare System 2025-12-01 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2512.03098 False False 2512.00708 Towards Precision Protein-Ligand Affinity Prediction Benchmark: A Complete and Modification-Aware DAVIS Dataset 2025-11-30 cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2512.00708 False False 2512.00905 Disentangling Proxies of Demographic Adjustments in Clinical Equations 2025-11-30 q-bio.QM q-bio.QM https://arxiv.org/abs/2512.00905 False False 2512.00984 Symmetries at the origin of hierarchical emergence 2025-11-30 physics.dis-nn;q-bio.NC q-bio.NC https://arxiv.org/abs/2512.00984 False False 2512.00989 Sleep Apnea Detection on a Wireless Multimodal Wearable Device Without Oxygen Flow Using a Mamba-based Deep Learning Approach 2025-11-30 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2512.00989 False False 2512.01006 The Coupling Strength Is a Scale Parameter in Threshold Power-Law Reservoirs and Does Not Influence Training Accuracy 2025-11-30 math.DS;q-bio.NC q-bio.NC https://arxiv.org/abs/2512.01006 False False 2512.01007 Adaptation to time-varying environments in a reaction-diffusion model 2025-11-30 physics.stat-mech;q-bio.PE q-bio.PE https://arxiv.org/abs/2512.01007 False False 2512.01073 The Modeler Schema Theory of Consciousness, with a Falsifiable Experiment 2025-11-30 q-bio.NC q-bio.NC https://arxiv.org/abs/2512.01073 False False 2512.01074 COVID-19 Forecasting from U.S. Wastewater Surveillance Data: A Retrospective Multi-Model Study (2022-2024) 2025-11-30 q-bio.QM;stat.AP q-bio.QM https://arxiv.org/abs/2512.01074 False False 2512.01081 Testing the Machine Consciousness Hypothesis 2025-11-30 cs.AI;cs.CL;cs.LG;cs.MA;cs.NE;q-bio.NC q-bio.NC https://arxiv.org/abs/2512.01081 False False 2512.01058 Stability analysis of action potential generation using Markov models of voltage-gated sodium channel isoforms 2025-11-30 physics.CD;q-bio.NC q-bio.NC https://arxiv.org/abs/2512.01058 False False 2512.03092 Approximate Bayesian Inference on Mechanisms of Network Growth and Evolution 2025-11-30 cs.SI;q-bio.QM q-bio.QM https://arxiv.org/abs/2512.03092 False False 2512.00696 Hierarchical Molecular Language Models (HMLMs) 2025-11-30 cs.AI;cs.ET;q-bio.MN q-bio.MN https://arxiv.org/abs/2512.00696 False False 2512.01033 Associative Syntax and Maximal Repetitions reveal context-dependent complexity in fruit bat communication 2025-11-30 cs.CL;cs.IT;cs.LG;math.IT;q-bio.QM q-bio.QM https://arxiv.org/abs/2512.01033 False False 2512.01074 COVID-19 Forecasting from U.S. Wastewater Surveillance Data: A Retrospective Multi-Model Study (2022-2024) 2025-11-30 q-bio.QM;stat.AP q-bio.QM https://arxiv.org/abs/2512.01074 False False 2512.01073 The Modeler Schema Theory of Consciousness, with a Falsifiable Experiment 2025-11-30 q-bio.NC q-bio.NC https://arxiv.org/abs/2512.01073 False False 2512.01073 The Modeler Schema Theory of Consciousness, with a Falsifiable Experiment 2025-11-30 q-bio.NC q-bio.NC https://arxiv.org/abs/2512.01073 False False 2512.01073 The Modeler Schema Theory of Consciousness, with a Falsifiable Experiment 2025-11-30 q-bio.NC q-bio.NC https://arxiv.org/abs/2512.01073 False False 2512.01073 The Modeler Schema Theory of Consciousness, with a Falsifiable Experiment 2025-11-30 q-bio.NC q-bio.NC https://arxiv.org/abs/2512.01073 False False 2512.00254 Spatial self-organization stabilizes obligate mutualism through pattern formation 2025-11-29 q-bio.PE q-bio.PE https://arxiv.org/abs/2512.00254 False False 2512.00281 Rethinking Lung Cancer Screening: AI Nodule Detection and Diagnosis Outperforms Radiologists, Leading Models, and Standards Beyond Size and Growth 2025-11-29 cs.CV;q-bio.NC q-bio.NC https://arxiv.org/abs/2512.00281 False False 2512.00376 Layer Probing Improves Kinase Functional Prediction with Protein Language Models 2025-11-29 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2512.00376 False False 2512.00379 EnzyCLIP: A Cross-Attention Dual Encoder Framework with Contrastive Learning for Predicting Enzyme Kinetic Constants 2025-11-29 cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2512.00379 False False 2512.00384 Efficient and Programmable Exploration of Synthesizable Chemical Space 2025-11-29 cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2512.00384 False False 2512.00467 A Theoretical Framework for the Formation of Large Animal Groups: Topological Coordination, Subgroup Merging, and Velocity Inheritance 2025-11-29 math.DS;physics.AO;physics.bio-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2512.00467 False False 2512.00550 Tissue stress measurements with Bayesian Inversion Stress Microscopy 2025-11-29 physics.bio-ph;q-bio.QM q-bio.QM https://arxiv.org/abs/2512.00550 False False 2512.00586 Statistical NLP for Optimization of Clinical Trial Success Prediction in Pharmaceutical R&D 2025-11-29 cs.CL;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2512.00586 False False 2512.00642 DeepFRI Demystified: Interpretability vs. Accuracy in AI Protein Function Prediction 2025-11-29 q-bio.BM q-bio.BM https://arxiv.org/abs/2512.00642 False False 2512.00283 BioArc: Discovering Optimal Neural Architectures for Biological Foundation Models 2025-11-29 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2512.00283 False False 2512.00521 Rep3Net: An Approach Exploiting Multimodal Representation for Molecular Bioactivity Prediction 2025-11-29 cs.CL;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2512.00521 False False 2512.00315 Correlation-Weighted Communicability Curvature as a Structural Driver of Dengue Spread: A Bayesian Spatial Analysis of Recife (2015-2024) 2025-11-29 math.PR;physics.soc-ph;q-bio.PE;stat.AP q-bio.PE https://arxiv.org/abs/2512.00315 False False 2512.00306 VCWorld: A Biological World Model for Virtual Cell Simulation 2025-11-29 cs.AI;cs.LG;q-bio.CB q-bio.CB https://arxiv.org/abs/2512.00306 False False 2512.00281 Integrated AI Nodule Detection and Diagnosis for Lung Cancer Screening Beyond Size and Growth-Based Standards Compared with Radiologists and Leading Models 2025-11-29 cs.CV;q-bio.NC q-bio.NC https://arxiv.org/abs/2512.00281 False False 2512.00281 Integrated AI Nodule Detection and Diagnosis for Lung Cancer Screening Beyond Size and Growth-Based Standards Compared with Radiologists and Leading Models 2025-11-29 cs.CV;q-bio.NC q-bio.NC https://arxiv.org/abs/2512.00281 False False 2512.00254 Self-organized vegetation patterns promote persistence of plant-pollinator mutualisms under environmental stress 2025-11-29 q-bio.PE q-bio.PE https://arxiv.org/abs/2512.00254 False False 2512.00254 Self-organized vegetation patterns promote persistence of plant-pollinator mutualisms under environmental stress 2025-11-29 q-bio.PE q-bio.PE https://arxiv.org/abs/2512.00254 False False 2512.00281 Beyond Size and Growth: Rethinking Lung Cancer Screening with AI Based Nodule Detection and Diagnosis 2025-11-29 cs.CV;q-bio.NC q-bio.NC https://arxiv.org/abs/2512.00281 False False 2512.00281 Beyond Size and Growth: Rethinking Lung Cancer Screening with AI Based Nodule Detection and Diagnosis 2025-11-29 cs.CV;q-bio.NC q-bio.NC https://arxiv.org/abs/2512.00281 False False 2512.00283 BioArc: Discovering Optimal Neural Architectures for Biological Foundation Models 2025-11-29 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2512.00283 False False 2512.00283 BioArc: Discovering Optimal Neural Architectures for Biological Foundation Models 2025-11-29 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2512.00283 False False 2511.22821 deepFEPS: Deep Learning-Oriented Feature Extraction for Biological Sequences 2025-11-28 q-bio.GN q-bio.GN https://arxiv.org/abs/2511.22821 0.7254 0.6698 True 5 5.45 False 2511.22828 Fast dynamical similarity analysis 2025-11-28 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2511.22828 False False 2511.22841 A novel approach to profile global circulation pathway of SARS-CoV-2 variants by site-based mutation dynamics 2025-11-28 q-bio.PE;q-bio.QM q-bio.PE https://arxiv.org/abs/2511.22841 False False 2511.22870 Scalable Diffusion Transformer for Conditional 4D fMRI Synthesis 2025-11-28 cs.CV;q-bio.NC q-bio.NC https://arxiv.org/abs/2511.22870 False False 2511.23114 A Spectral Koopman Approximation Framework for Stochastic Reaction Networks 2025-11-28 math.PR;q-bio.MN;q-bio.QM q-bio.MN https://arxiv.org/abs/2511.23114 False False 2511.23209 Stochastic fluctuations in an eco-evolutionary game dynamics with environmental feedbacks 2025-11-28 q-bio.PE q-bio.PE https://arxiv.org/abs/2511.23209 False False 2511.23344 A theory for coexistence and selection of branched actin networks in a shared and finite pool of monomers 2025-11-28 physics.bio-ph;physics.soft;q-bio.SC q-bio.SC https://arxiv.org/abs/2511.23344 False False 2512.00132 An Operational Quantum Information Framework for Experimental Studies on Color Perception 2025-11-28 math.MP;physics.math-ph;physics.quant-ph;physics.soc-ph;q-bio.NC q-bio.NC https://arxiv.org/abs/2512.00132 False False 2512.00137 HyperADRs: A Hierarchical Hypergraph Framework for Drug-Gene-ADR Prediction 2025-11-28 q-bio.QM q-bio.QM https://arxiv.org/abs/2512.00137 False False 2512.00140 The Geometry of Certainty: Recursive Topological Condensation and the Limits of Inference 2025-11-28 q-bio.NC q-bio.NC https://arxiv.org/abs/2512.00140 False False 2512.00194 AutocleanEEG ICVision: Automated ICA Artifact Classification Using Vision-Language AI 2025-11-28 cs.CV;cs.LG;eess.IV;q-bio.QM q-bio.QM https://arxiv.org/abs/2512.00194 False False 2512.00196 Emergent Riemannian geometry over learning discrete computations on continuous manifolds 2025-11-28 cs.LG;cs.NE;math.DG;q-bio.NC;stat.ML q-bio.NC https://arxiv.org/abs/2512.00196 False False 2512.05990 Memory-Amortized Inference: A Topological Unification of Search, Closure, and Structure 2025-11-28 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2512.05990 False False 2511.22848 Short-term plasticity recalls forgotten memories through a trampoline mechanism 2025-11-28 physics.dis-nn;physics.stat-mech;q-bio.NC q-bio.NC https://arxiv.org/abs/2511.22848 False False 2512.00126 RadDiff: Retrieval-Augmented Denoising Diffusion for Protein Inverse Folding 2025-11-28 cs.AI;q-bio.QM q-bio.QM https://arxiv.org/abs/2512.00126 False False 2511.22828 Fast dynamical similarity analysis 2025-11-28 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2511.22828 False False 2511.23344 A theory for coexistence and selection of branched actin networks in a shared and finite pool of monomers 2025-11-28 physics.bio-ph;physics.soft;q-bio.SC q-bio.SC https://arxiv.org/abs/2511.23344 False False 2511.23344 A theory for coexistence and selection of branched actin networks in a shared and finite pool of monomers 2025-11-28 physics.bio-ph;physics.soft;q-bio.SC q-bio.SC https://arxiv.org/abs/2511.23344 False False 2511.22005 Assessing the Validity of the Fixed Tree Topology Assumption in Phylodynamic Inference 2025-11-27 q-bio.PE q-bio.PE https://arxiv.org/abs/2511.22005 False False 2511.22050 Integrative characterization of the topography of V4 neural codes using deep learning approaches 2025-11-27 q-bio.NC q-bio.NC https://arxiv.org/abs/2511.22050 False False 2511.22096 Density-based Neural Temporal Point Processes for Heartbeat Dynamics 2025-11-27 eess.SP;q-bio.TO;stat.AP q-bio.TO https://arxiv.org/abs/2511.22096 False False 2511.22145 Dynamical Inference of Cell Size Regulation Parameters 2025-11-27 q-bio.QM q-bio.QM https://arxiv.org/abs/2511.22145 False False 2511.22239 DeepPNI: Language- and graph-based model for mutation-driven protein-nucleic acid energetics 2025-11-27 cs.AI;q-bio.BM q-bio.BM https://arxiv.org/abs/2511.22239 False False 2511.22252 Stochastic Models of Resource Allocation in Chemical Reaction Networks 2025-11-27 math.PR;q-bio.MN q-bio.MN https://arxiv.org/abs/2511.22252 False False 2511.22519 FoldSAE: Learning to Steer Protein Folding Through Sparse Representations 2025-11-27 q-bio.QM q-bio.QM https://arxiv.org/abs/2511.22519 False False 2511.22736 Bounds on the sequence length sufficient to reconstruct level-1 phylogenetic networks 2025-11-27 math.CO;q-bio.PE q-bio.PE https://arxiv.org/abs/2511.22736 False False 2512.00100 Predicting COVID-19 Prevalence Using Wastewater RNA Surveillance: A Semi-Supervised Learning Approach with Temporal Feature Trust 2025-11-27 cs.LG;q-bio.QM;stat.AP q-bio.QM https://arxiv.org/abs/2512.00100 False False 2512.00109 The Dual-Loop Model of Psychophysiological Regulation: A Framework for Psychological Breakthrough and State Transition 2025-11-27 q-bio.NC q-bio.NC https://arxiv.org/abs/2512.00109 False False 2512.07881 "Revised comment on the paper titled ""The Origin of Quantum Mechanical Statistics: Insights from Research on Human Language" 2025-11-27 physics.hist-ph;q-bio.NC q-bio.NC https://arxiv.org/abs/2512.07881 False False 2511.22736 Bounds on the sequence length sufficient to reconstruct binary level-$1$ phylogenetic networks under the CFN model 2025-11-27 math.CO;q-bio.PE q-bio.PE https://arxiv.org/abs/2511.22736 False False 2511.22736 Bounds on the sequence length sufficient to reconstruct binary level-$1$ phylogenetic networks under the CFN model 2025-11-27 math.CO;q-bio.PE q-bio.PE https://arxiv.org/abs/2511.22736 False False 2511.22519 FoldSAE: Learning to Steer Protein Folding Through Sparse Representations 2025-11-27 q-bio.QM q-bio.QM https://arxiv.org/abs/2511.22519 False False 2511.21476 Steering Generative Models for Protein Design: Aligning and Conditioning Strategies 2025-11-26 q-bio.BM q-bio.BM https://arxiv.org/abs/2511.21476 False False 2511.20990 Meditative absorption shifts brain dynamics toward criticality 2025-11-26 q-bio.NC q-bio.NC https://arxiv.org/abs/2511.20990 False False 2511.21124 Moonshine.jl: a Julia package for genome-scale model-based ancestral recombination graph inference 2025-11-26 q-bio.GN q-bio.GN https://arxiv.org/abs/2511.21124 False False 2511.21199 Behavior-induced oscillations in epidemic outbreaks with distributed memory: beyond the linear chain trick using numerical methods 2025-11-26 math.DS;q-bio.PE q-bio.PE https://arxiv.org/abs/2511.21199 False False 2511.21587 Approximate Bayesian Computation Made Easy: A Practical Guide to ABC-SMC for Dynamical Systems with \texttt{pymc} 2025-11-26 physics.comp-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2511.21587 False False 2511.21605 Detecting absence: A dedicated prediction-error signal emerging in the auditory thalamus 2025-11-26 q-bio.NC q-bio.NC https://arxiv.org/abs/2511.21605 False False 2511.21614 Automated Protein Motif Localization using Concept Activation Vectors in Protein Language Model Embedding Space 2025-11-26 q-bio.QM q-bio.QM https://arxiv.org/abs/2511.21614 False False 2511.21655 Geometric Confinement Reveals Scale-Free Velocity Correlations in Epithelial Cell Monolayer 2025-11-26 q-bio.TO q-bio.TO https://arxiv.org/abs/2511.21655 False False 2511.21674 Event-driven eligibility propagation in large sparse networks: efficiency shaped by biological realism 2025-11-26 cs.NE;q-bio.NC q-bio.NC https://arxiv.org/abs/2511.21674 False False 2511.21781 BeeRNA: tertiary structure-based RNA inverse folding using Artificial Bee Colony 2025-11-26 cs.AI;q-bio.BM q-bio.BM https://arxiv.org/abs/2511.21781 False False 2511.21848 Massively Parallel Imitation Learning of Mouse Forelimb Musculoskeletal Reaching Dynamics 2025-11-26 cs.LG;cs.RO;q-bio.NC;q-bio.QM q-bio.NC https://arxiv.org/abs/2511.21848 False False 2511.21900 Beyond Atoms: Evaluating Electron Density Representation for 3D Molecular Learning 2025-11-26 cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2511.21900 False False 2511.21919 Identifying all snarls and superbubbles in linear-time, via a unified SPQR-tree framework 2025-11-26 cs.DM;cs.DS;q-bio.QM q-bio.QM https://arxiv.org/abs/2511.21919 False False 2511.21940 Deep Learning Architectures for Code-Modulated Visual Evoked Potentials Detection 2025-11-26 cs.LG;eess.SP;q-bio.NC q-bio.NC https://arxiv.org/abs/2511.21940 False False 2512.00090 Biomimetic Metamaterial-based Interface for Decoding Heterogeneous Mechanodermal Activity 2025-11-26 q-bio.NC q-bio.NC https://arxiv.org/abs/2512.00090 False False 2512.07869 Manifolds and Modules: How Function Develops in a Neural Foundation Model 2025-11-26 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2512.07869 False False 2511.20950 Stabilizing Fractional Dynamical Networks Suppresses Epileptic Seizures 2025-11-26 q-bio.NC;q-bio.QM q-bio.NC https://arxiv.org/abs/2511.20950 False False 2511.21677 Lesion-Independent Associations Between Thalamic Nuclei Volumes and Information Processing Speed in Multiple Sclerosis 2025-11-26 q-bio.NC q-bio.NC https://arxiv.org/abs/2511.21677 False False 2511.21476 Steering Generative Models for Protein Design: Aligning and Conditioning Strategies 2025-11-26 q-bio.BM q-bio.BM https://arxiv.org/abs/2511.21476 False False 2511.21124 Moonshine.jl: a Julia package for genome-scale model-based ancestral recombination graph inference 2025-11-26 q-bio.GN q-bio.GN https://arxiv.org/abs/2511.21124 False False 2511.21124 Moonshine.jl: a Julia package for genome-scale model-based ancestral recombination graph inference 2025-11-26 q-bio.GN q-bio.GN https://arxiv.org/abs/2511.21124 False False 2511.21124 Moonshine.jl: a Julia package for genome-scale model-based ancestral recombination graph inference 2025-11-26 q-bio.GN q-bio.GN https://arxiv.org/abs/2511.21124 False False 2511.21124 Moonshine.jl: a Julia package for genome-scale model-based ancestral recombination graph inference 2025-11-26 q-bio.GN q-bio.GN https://arxiv.org/abs/2511.21124 False False 2511.19813 Time-Varying Network Driver Estimation (TNDE) Quantifies Stage-Specific Regulatory Effects From Single-Cell Snapshots 2025-11-25 q-bio.MN;stat.AP;stat.ML q-bio.MN https://arxiv.org/abs/2511.19813 False False 2511.19828 Expectation-enforcing strategies for repeated games 2025-11-25 cs.GT;econ.TH;q-bio.PE q-bio.PE https://arxiv.org/abs/2511.19828 False False 2511.19894 Spanning Tree Basis for Unbiased Averaging of Network Topologies 2025-11-25 q-bio.QM q-bio.QM https://arxiv.org/abs/2511.19894 False False 2511.19964 Hormonal Regulation of Breast Cancer Incidence Dynamics: A Mathematical Analysis Explaining the Clemmesen's Hook 2025-11-25 q-bio.PE q-bio.PE https://arxiv.org/abs/2511.19964 False False 2511.20155 Noninvasive rheological inference from stable flows in confined tissues 2025-11-25 physics.soft;q-bio.TO q-bio.TO https://arxiv.org/abs/2511.20155 False False 2511.20162 While recognizing actions, LMMs struggle to detect core interaction events 2025-11-25 cs.AI;cs.CV;q-bio.NC q-bio.NC https://arxiv.org/abs/2511.20162 False False 2511.20339 Plumbing Analog of Molecular Computation 2025-11-25 q-bio.SC q-bio.SC https://arxiv.org/abs/2511.20339 False False 2511.20392 Mechano-chemical modeling of glia initiated secondary injury of neurons under mechanical load 2025-11-25 q-bio.NC;q-bio.QM q-bio.NC https://arxiv.org/abs/2511.20392 False False 2511.20723 Multivariate Functional Data Analysis Uncovers Behavioral Fingerprints in Invertebrate Locomotor Response to Micropollutants 2025-11-25 q-bio.QM q-bio.QM https://arxiv.org/abs/2511.20723 False False 2511.20727 SeqManager: A Web-Based Tool for Efficient Sequencing Data Storage Management and Duplicate Detection 2025-11-25 q-bio.GN q-bio.GN https://arxiv.org/abs/2511.20727 False False 2511.20819 A statistical framework for comparing epidemic forests 2025-11-25 q-bio.QM;stat.AP;stat.ME q-bio.QM https://arxiv.org/abs/2511.20819 False False 2511.20835 Symbiotic Brain-Machine Drawing via Visual Brain-Computer Interfaces 2025-11-25 cs.HC;q-bio.NC q-bio.NC https://arxiv.org/abs/2511.20835 False False 2511.20382 MoRE: Batch-Robust Multi-Omics Representations from Frozen Pre-trained Transformers 2025-11-25 cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2511.20382 False False 2511.20883 Immunometabolic Gatekeeping: Reconciling Peto's & the T-cell Infiltration Prognostic Paradox 2025-11-25 q-bio.TO q-bio.TO https://arxiv.org/abs/2511.20883 False False 2511.20890 A software-based focus system for wide-field optical microscopy 2025-11-25 physics.bio-ph;q-bio.QM q-bio.QM https://arxiv.org/abs/2511.20890 False False 2511.21767 LAYER: A Quantitative Explainable AI Framework for Decoding Tissue-Layer Drivers of Myofascial Low Back Pain 2025-11-25 cs.AI;cs.CV;eess.IV;q-bio.TO q-bio.TO https://arxiv.org/abs/2511.21767 False False 2511.21770 Automated Statistical and Machine Learning Platform for Biological Research 2025-11-25 cs.LG;q-bio.QM;stat.ML q-bio.QM https://arxiv.org/abs/2511.21770 False False 2511.20532 MIMIC-MJX: Neuromechanical Emulation of Animal Behavior 2025-11-25 cs.AI;cs.RO;q-bio.NC q-bio.NC https://arxiv.org/abs/2511.20532 False False 2511.20734 Automated Histopathologic Assessment of Hirschsprung Disease Using a Multi-Stage Vision Transformer Framework 2025-11-25 cs.CV;eess.IV;q-bio.QM q-bio.QM https://arxiv.org/abs/2511.20734 False False 2511.20179 Human-computer interactions predict mental health 2025-11-25 cs.AI;cs.HC;q-bio.NC q-bio.NC https://arxiv.org/abs/2511.20179 False False 2511.20859 Computing Evolutionarily Stable Strategies in Multiplayer Games 2025-11-25 cs.AI;cs.GT;cs.MA;econ.TH;q-bio.PE q-bio.PE https://arxiv.org/abs/2511.20859 False False 2511.20162 Action Without Interaction: Probing the Physical Foundations of Video LMMs via Contact-Release Detection 2025-11-25 cs.AI;cs.CV;q-bio.NC q-bio.NC https://arxiv.org/abs/2511.20162 False False 2511.20179 Human-computer interactions predict mental health 2025-11-25 cs.AI;cs.HC;q-bio.NC q-bio.NC https://arxiv.org/abs/2511.20179 False False 2511.20162 Action Without Interaction: Probing the Physical Foundations of Video LMMs via Contact-Release Detection 2025-11-25 cs.AI;cs.CV;q-bio.NC q-bio.NC https://arxiv.org/abs/2511.20162 False False 2511.20179 Human-computer interactions predict mental health 2025-11-25 cs.AI;cs.HC;q-bio.NC q-bio.NC https://arxiv.org/abs/2511.20179 False False 2511.20179 Human-computer interactions predict mental health 2025-11-25 cs.AI;cs.HC;q-bio.NC q-bio.NC https://arxiv.org/abs/2511.20179 False False 2511.20179 Human-computer interactions predict mental health 2025-11-25 cs.AI;cs.HC;q-bio.NC q-bio.NC https://arxiv.org/abs/2511.20179 False False 2511.20162 Action Without Interaction: Probing the Physical Foundations of Video LMMs via Contact-Release Detection 2025-11-25 cs.AI;cs.CV;q-bio.NC q-bio.NC https://arxiv.org/abs/2511.20162 False False 2511.20162 Action Without Interaction: Probing the Physical Foundations of Video LMMs via Contact-Release Detection 2025-11-25 cs.AI;cs.CV;q-bio.NC q-bio.NC https://arxiv.org/abs/2511.20162 False False 2511.20859 Computing Evolutionarily Stable Strategies in Multiplayer Games 2025-11-25 cs.AI;cs.GT;cs.MA;econ.TH;q-bio.PE q-bio.PE https://arxiv.org/abs/2511.20859 False False 2511.20859 Computing Evolutionarily Stable Strategies in Multiplayer Games 2025-11-25 cs.AI;cs.GT;cs.MA;econ.TH;q-bio.PE q-bio.PE https://arxiv.org/abs/2511.20859 False False 2511.20859 Computing Evolutionarily Stable Strategies in Multiplayer Games 2025-11-25 cs.AI;cs.GT;cs.MA;econ.TH;q-bio.PE q-bio.PE https://arxiv.org/abs/2511.20859 False False 2511.20859 Computing Evolutionarily Stable Strategies in Multiplayer Games 2025-11-25 cs.AI;cs.GT;cs.MA;econ.TH;q-bio.PE q-bio.PE https://arxiv.org/abs/2511.20859 False False 2511.20532 MIMIC-MJX: Neuromechanical Emulation of Animal Behavior 2025-11-25 cs.AI;cs.RO;q-bio.NC q-bio.NC https://arxiv.org/abs/2511.20532 False False 2511.20532 MIMIC-MJX: Neuromechanical Emulation of Animal Behavior 2025-11-25 cs.AI;cs.RO;q-bio.NC q-bio.NC https://arxiv.org/abs/2511.20532 False False 2511.18745 On the role of fractional Brownian motion in models of chemotaxis and stochastic gradient ascent 2025-11-24 cs.CE;q-bio.QM;stat.AP q-bio.QM https://arxiv.org/abs/2511.18745 False False 2511.18853 Decoding the science behind antioxidant -antiinflammatory nutraceuticals in stroke 2025-11-24 q-bio.NC q-bio.NC https://arxiv.org/abs/2511.18853 False False 2511.18883 Enumeration of Autocatalytic Subsystems in Large Chemical Reaction Networks 2025-11-24 math.CO;q-bio.CB;q-bio.MN q-bio.CB https://arxiv.org/abs/2511.18883 False False 2511.18893 A universal phase-plane model for in vivo protein aggregation 2025-11-24 q-bio.BM q-bio.BM https://arxiv.org/abs/2511.18893 False False 2511.19068 The TAG array of a multiple sequence alignment 2025-11-24 cs.DS;q-bio.GN q-bio.GN https://arxiv.org/abs/2511.19068 False False 2511.19093 Many-Eyes and Sentinels in Selfish and Cooperative Groups 2025-11-24 cs.MA;physics.bio-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2511.19093 False False 2511.19153 Fast and Flexible Flow Decompositions in General Graphs via Dominators 2025-11-24 cs.DS;math.OC;q-bio.GN q-bio.GN https://arxiv.org/abs/2511.19153 False False 2511.19184 Torsion-Space Diffusion for Protein Backbone Generation with Geometric Refinement 2025-11-24 cs.AI;q-bio.BM q-bio.BM https://arxiv.org/abs/2511.19184 False False 2511.19264 Interpreting GFlowNets for Drug Discovery: Extracting Actionable Insights for Medicinal Chemistry 2025-11-24 cs.AI;cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2511.19264 False False 2511.19423 Beyond Protein Language Models: An Agentic LLM Framework for Mechanistic Enzyme Design 2025-11-24 cs.AI;q-bio.QM q-bio.QM https://arxiv.org/abs/2511.19423 False False 2511.19520 Modeling Bioelectric State Transitions in Glial Cells: An ASAL-Inspired Computational Approach to Glioblastoma Initiation 2025-11-24 cs.NE;physics.bio-ph;q-bio.NC q-bio.NC https://arxiv.org/abs/2511.19520 False False 2511.19535 Masked Autoencoder Joint Learning for Robust Spitzoid Tumor Classification 2025-11-24 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2511.19535 False False 2511.19548 When Should Neural Data Inform Welfare? A Critical Framework for Policy Uses of Neuroeconomics 2025-11-24 cs.AI;cs.CY;cs.LG;econ.GN;q-bio.NC;q-fin.EC q-bio.NC https://arxiv.org/abs/2511.19548 False False 2511.19549 Parallelism in Neurodegenerative Biomarker Tests: Hidden Errors and the Risk of Misconduct 2025-11-24 q-bio.QM;stat.AP q-bio.QM https://arxiv.org/abs/2511.19549 False False 2511.19743 Population size in stochastic multi-patch ecological models 2025-11-24 math.PR;q-bio.PE q-bio.PE https://arxiv.org/abs/2511.19743 False False 2511.19769 Blini: lightweight nucleotide sequence search and dereplication 2025-11-24 q-bio.QM q-bio.QM https://arxiv.org/abs/2511.19769 False False 2511.20493 Development of a fully deep learning model to improve the reproducibility of sector classification systems for predicting unerupted maxillary canine likelihood of impaction 2025-11-24 cs.CV;eess.IV;q-bio.QM q-bio.QM https://arxiv.org/abs/2511.20493 False False 2512.00063 Exploring the changes in brain network SC-FC coupling patterns of partial sleep deprivation based on DTI-fMRI fusion analysis 2025-11-24 q-bio.NC q-bio.NC https://arxiv.org/abs/2512.00063 False False 2512.07842 State and Parameter Estimation for a Neural Model of Local Field Potentials 2025-11-24 math.DS;math.PR;q-bio.NC;stat.CO q-bio.NC https://arxiv.org/abs/2512.07842 False False 2511.18883 Enumeration of Autocatalytic Subsystems in Large Chemical Reaction Networks 2025-11-24 math.CO;q-bio.CB;q-bio.MN q-bio.CB https://arxiv.org/abs/2511.18883 False False 2511.18883 Enumeration of Autocatalytic Subsystems in Large Chemical Reaction Networks 2025-11-24 math.CO;q-bio.CB;q-bio.MN q-bio.CB https://arxiv.org/abs/2511.18883 False False 2512.07842 State and Parameter Estimation for a Neural Model of Local Field Potentials 2025-11-24 math.DS;math.PR;q-bio.NC;stat.CO q-bio.NC https://arxiv.org/abs/2512.07842 False False 2512.07842 State and Parameter Estimation for a Neural Model of Local Field Potentials 2025-11-24 math.DS;math.PR;q-bio.NC;stat.CO q-bio.NC https://arxiv.org/abs/2512.07842 False False 2511.19769 Blini: lightweight nucleotide sequence search and dereplication 2025-11-24 q-bio.QM q-bio.QM https://arxiv.org/abs/2511.19769 False False 2511.19769 Blini: lightweight nucleotide sequence search and dereplication 2025-11-24 q-bio.QM q-bio.QM https://arxiv.org/abs/2511.19769 False False 2511.18745 On the role of fractional Brownian motion in models of chemotaxis and stochastic gradient ascent 2025-11-24 cs.CE;q-bio.QM;stat.AP q-bio.QM https://arxiv.org/abs/2511.18745 False False 2511.18745 On the role of fractional Brownian motion in models of chemotaxis and stochastic gradient ascent 2025-11-24 cs.CE;q-bio.QM;stat.AP q-bio.QM https://arxiv.org/abs/2511.18745 False False 2511.19153 Fast and Flexible Flow Decompositions in General Graphs via Dominators 2025-11-24 cs.DS;math.OC;q-bio.GN q-bio.GN https://arxiv.org/abs/2511.19153 False False 2511.19153 Fast and Flexible Flow Decompositions in General Graphs via Dominators 2025-11-24 cs.DS;math.OC;q-bio.GN q-bio.GN https://arxiv.org/abs/2511.19153 False False 2511.19264 Interpreting GFlowNets for Drug Discovery: What probes can and cannot show 2025-11-24 cs.AI;cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2511.19264 False False 2511.19264 Interpreting GFlowNets for Drug Discovery: What probes can and cannot show 2025-11-24 cs.AI;cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2511.19264 False False 2511.18287 TRIDENT: A Trimodal Cascade Generative Framework for Drug and RNA-Conditioned Cellular Morphology Synthesis 2025-11-23 cs.CV;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2511.18287 False False 2511.18294 MultiDiffNet: A Multi-Objective Diffusion Framework for Generalizable Brain Decoding 2025-11-23 cs.AI;cs.HC;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2511.18294 False False 2511.18325 Brain-MGF: Multimodal Graph Fusion Network for EEG-fMRI Brain Connectivity Analysis Under Psilocybin 2025-11-23 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2511.18325 False False 2511.18336 Auxiliary Gene Learning: Spatial Gene Expression Estimation by Auxiliary Gene Selection 2025-11-23 cs.CV;cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2511.18336 False False 2511.18626 Learning the principles of T cell antigen discernment 2025-11-23 q-bio.CB;q-bio.MN;q-bio.QM q-bio.CB https://arxiv.org/abs/2511.18626 False False 2511.18238 Detecting Discontinuities in the Topology of Alzheimers gene Co-expression 2025-11-23 q-bio.QM q-bio.QM https://arxiv.org/abs/2511.18238 False False 2511.17905 Canalization as a stabilizing principle of gene regulatory networks: a discrete dynamical systems perspective 2025-11-22 cs.DM;math.DS;q-bio.MN q-bio.MN https://arxiv.org/abs/2511.17905 False False 2511.17996 CLTree: A Tool for Annotating, Rooting, and Evaluating Phylogenetic Trees Leveraging Genomic Lineages 2025-11-22 q-bio.PE;q-bio.QM q-bio.PE https://arxiv.org/abs/2511.17996 False False 2511.18000 Reward Engineering for Spatial Epidemic Simulations: A Reinforcement Learning Platform for Individual Behavioral Learning 2025-11-22 cs.AI;cs.LG;q-bio.PE q-bio.PE https://arxiv.org/abs/2511.18000 False False 2511.18010 EscalNet: Learn isotropic representation space for biomolecular dynamics based on effective energy 2025-11-22 q-bio.BM;q-bio.QM q-bio.BM https://arxiv.org/abs/2511.18010 False False 2511.18057 The Hydraulic Brain: Understanding as Constraint-Release Phase Transition in Whole-Body Resonance 2025-11-22 eess.SP;q-bio.NC q-bio.NC https://arxiv.org/abs/2511.18057 False False 2511.18063 A Lightweight, Interpretable Deep Learning System for Automated Detection of Cervical Adenocarcinoma In Situ (AIS) 2025-11-22 cs.CV;q-bio.TO q-bio.TO https://arxiv.org/abs/2511.18063 False False 2512.00058 Sight, smell and more: What cues do free-ranging dogs use for decision-making while scavenging? 2025-11-22 q-bio.NC q-bio.NC https://arxiv.org/abs/2512.00058 False False 2511.20692 The Human Brain as a Combinatorial Complex 2025-11-22 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2511.20692 False False 2511.18142 SEIR models with host heterogeneity: theoretical aspects and applications to seasonal influenza dynamics 2025-11-22 math.DS;q-bio.PE q-bio.PE https://arxiv.org/abs/2511.18142 False False 2511.18000 Reward Engineering for Spatial Epidemic Simulations: A Reinforcement Learning Platform for Individual Behavioral Learning 2025-11-22 cs.AI;cs.LG;q-bio.PE q-bio.PE https://arxiv.org/abs/2511.18000 False False 2511.18000 Reward Engineering for Spatial Epidemic Simulations: A Reinforcement Learning Platform for Individual Behavioral Learning 2025-11-22 cs.AI;cs.LG;q-bio.PE q-bio.PE https://arxiv.org/abs/2511.18000 False False 2511.18000 Reward Engineering for Spatial Epidemic Simulations: A Reinforcement Learning Platform for Individual Behavioral Learning 2025-11-22 cs.AI;cs.LG;q-bio.PE q-bio.PE https://arxiv.org/abs/2511.18000 False False 2511.16868 The Joint Gromov Wasserstein Objective for Multiple Object Matching 2025-11-21 cs.CV;q-bio.BM q-bio.BM https://arxiv.org/abs/2511.16868 False False 2511.16878 Double-Profile Intersection (DoPIo) Ultrasound: Pointwise Shear Elasticity Estimation using Paired Confocal Displacement Profiles 2025-11-21 eess.SP;physics.med-ph;q-bio.TO q-bio.TO https://arxiv.org/abs/2511.16878 False False 2511.16923 A Hybrid Computational Intelligence Framework for scRNA-seq Imputation: Integrating scRecover and Random Forests 2025-11-21 cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2511.16923 False False 2511.16933 A novel approach to classification of ECG arrhythmia types with latent ODEs 2025-11-21 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2511.16933 False False 2511.17499 Local equations for the generalized Lotka-Volterra model on sparse asymmetric graphs 2025-11-21 physics.dis-nn;q-bio.PE q-bio.PE https://arxiv.org/abs/2511.17499 False False 2511.17787 Data-Driven Predictive Modeling of Microfluidic Cancer Cell Separation Using a Deterministic Lateral Displacement Device 2025-11-21 cs.LG;physics.med-ph;q-bio.QM q-bio.QM https://arxiv.org/abs/2511.17787 False False 2511.17794 Complete strategy spaces reveal hidden pathways to cooperation 2025-11-21 cs.GT;q-bio.PE q-bio.PE https://arxiv.org/abs/2511.17794 False False 2511.17279 Survival and invasion dynamics in cell populations: an analytical framework for threshold behaviour in nonlinear age-structured models 2025-11-21 math.AP;q-bio.CB q-bio.CB https://arxiv.org/abs/2511.17279 False False 2511.17685 Dual-Path Knowledge-Augmented Contrastive Alignment Network for Spatially Resolved Transcriptomics 2025-11-21 cs.AI;cs.CV;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2511.17685 False False 2511.20689 Morality in AI. A plea to embed morality in LLM architectures and frameworks 2025-11-21 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2511.20689 False False 2511.17695 SynCell: Contextualized Drug Synergy Prediction 2025-11-21 q-bio.QM q-bio.QM https://arxiv.org/abs/2511.17695 False False 2511.17685 Dual-Path Knowledge-Augmented Contrastive Alignment Network for Spatially Resolved Transcriptomics 2025-11-21 cs.AI;cs.CV;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2511.17685 False False 2511.17695 SynCell: Contextualized Drug Synergy Prediction 2025-11-21 q-bio.QM q-bio.QM https://arxiv.org/abs/2511.17695 False False 2511.17499 Local equations for the generalized Lotka-Volterra model on sparse asymmetric graphs 2025-11-21 physics.dis-nn;q-bio.PE q-bio.PE https://arxiv.org/abs/2511.17499 False False 2511.17499 Local equations for the generalized Lotka-Volterra model on sparse asymmetric graphs 2025-11-21 physics.dis-nn;q-bio.PE q-bio.PE https://arxiv.org/abs/2511.17499 False False 2511.16868 The Joint Gromov Wasserstein Objective for Multiple Object Matching 2025-11-21 cs.CV;q-bio.BM q-bio.BM https://arxiv.org/abs/2511.16868 False False 2511.16868 The Joint Gromov Wasserstein Objective for Multiple Object Matching 2025-11-21 cs.CV;q-bio.BM q-bio.BM https://arxiv.org/abs/2511.16868 False False 2511.17794 Complete strategy spaces reveal hidden pathways to cooperation 2025-11-21 cs.GT;q-bio.PE q-bio.PE https://arxiv.org/abs/2511.17794 False False 2511.17794 Complete strategy spaces reveal hidden pathways to cooperation 2025-11-21 cs.GT;q-bio.PE q-bio.PE https://arxiv.org/abs/2511.17794 False False 2511.15977 Efficient Chromosome Parallelization for Precision Medicine Genomic Workflows 2025-11-20 cs.AI;cs.DC;cs.LG;cs.PF;q-bio.GN q-bio.GN https://arxiv.org/abs/2511.15977 False False 2511.15985 Beat Frequency Induced Transitions in Synchronization Dynamics 2025-11-20 physics.PS;q-bio.NC q-bio.NC https://arxiv.org/abs/2511.15985 False False 2511.16113 ProtT-Affinity: Sequence-Based Protein-Protein Binding Affinity Prediction Using ProtT5 Embeddings 2025-11-20 q-bio.QM q-bio.QM https://arxiv.org/abs/2511.16113 False False 2511.16179 Age-structured model of dengue transmission dynamics with time-varying parameters, and its application to Brazil 2025-11-20 math.AP;q-bio.PE q-bio.PE https://arxiv.org/abs/2511.16179 False False 2511.16432 From generative AI to the brain: five takeaways 2025-11-20 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2511.16432 False False 2511.16456 Entropy Transfer Throughout the Structure of PDZ-2 and TIM-Barrel Proteins. A Dynamic Gaussian Network Model Study 2025-11-20 q-bio.BM q-bio.BM https://arxiv.org/abs/2511.16456 False False 2511.16618 SAM2S: Segment Anything in Surgical Videos via Semantic Long-term Tracking 2025-11-20 cs.CV;eess.IV;q-bio.TO q-bio.TO https://arxiv.org/abs/2511.16618 False False 2511.16799 Labeled histories and maximally probable labeled topologies with multifurcation 2025-11-20 math.CO;q-bio.PE q-bio.PE https://arxiv.org/abs/2511.16799 False False 2511.16802 A model for mosquito-borne epidemic outbreaks with information-dependent protective behaviour 2025-11-20 math.DS;q-bio.PE q-bio.PE https://arxiv.org/abs/2511.16802 False False 2511.17652 TeamPath: Building MultiModal Pathology Experts with Reasoning AI Copilots 2025-11-20 cs.CV;q-bio.QM q-bio.QM https://arxiv.org/abs/2511.17652 False False 2511.17662 Enhancing Breast Cancer Prediction with LLM-Inferred Confounders 2025-11-20 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2511.17662 False False 2512.02032 Characterizing Continuous and Discrete Hybrid Latent Spaces for Structural Connectomes 2025-11-20 cs.AI;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2512.02032 False False 2512.02033 CONFIDE: Hallucination Assessment for Reliable Biomolecular Structure Prediction and Design 2025-11-20 cs.AI;q-bio.BM q-bio.BM https://arxiv.org/abs/2512.02033 False False 2511.16268 Weakly Supervised Segmentation and Classification of Alpha-Synuclein Aggregates in Brightfield Midbrain Images 2025-11-20 cs.CV;eess.IV;q-bio.QM q-bio.QM https://arxiv.org/abs/2511.16268 False False 2511.16465 Mesoscale tissue properties and electric fields in brain stimulation: Bridging the macroscopic and microscopic scales using layer-specific cortical conductivity 2025-11-20 physics.app-ph;physics.bio-ph;physics.med-ph;q-bio.NC q-bio.NC https://arxiv.org/abs/2511.16465 False False 2511.17652 TeamPath: Building MultiModal Pathology Experts with Reasoning AI Copilots 2025-11-20 cs.CV;q-bio.QM q-bio.QM https://arxiv.org/abs/2511.17652 False False 2511.17652 TeamPath: Building MultiModal Pathology Experts with Reasoning AI Copilots 2025-11-20 cs.CV;q-bio.QM q-bio.QM https://arxiv.org/abs/2511.17652 False False 2511.16802 A model for mosquito-borne epidemic outbreaks with information-dependent protective behaviour 2025-11-20 math.DS;q-bio.PE q-bio.PE https://arxiv.org/abs/2511.16802 False False 2511.16802 A model for mosquito-borne epidemic outbreaks with information-dependent protective behaviour 2025-11-20 math.DS;q-bio.PE q-bio.PE https://arxiv.org/abs/2511.16802 False False 2511.16465 Mesoscale tissue properties and electric fields in brain stimulation: Bridging the macroscopic and microscopic scales using layer-specific cortical conductivity 2025-11-20 physics.app-ph;physics.bio-ph;physics.med-ph;q-bio.NC q-bio.NC https://arxiv.org/abs/2511.16465 False False 2511.16465 Mesoscale tissue properties and electric fields in brain stimulation: Bridging the macroscopic and microscopic scales using layer-specific cortical conductivity 2025-11-20 physics.app-ph;physics.bio-ph;physics.med-ph;q-bio.NC q-bio.NC https://arxiv.org/abs/2511.16465 False False 2511.16465 Mesoscale tissue properties and electric fields in brain stimulation: Bridging the macroscopic and microscopic scales using layer-specific cortical conductivity 2025-11-20 physics.app-ph;physics.bio-ph;physics.med-ph;q-bio.NC q-bio.NC https://arxiv.org/abs/2511.16465 False False 2511.16465 Mesoscale tissue properties and electric fields in brain stimulation: Bridging the macroscopic and microscopic scales using layer-specific cortical conductivity 2025-11-20 physics.app-ph;physics.bio-ph;physics.med-ph;q-bio.NC q-bio.NC https://arxiv.org/abs/2511.16465 False False 2511.16618 SurgSLOT: Segment Anything in Surgical Videos via Semantic Long-term Tracking 2025-11-20 cs.CV;eess.IV;q-bio.TO q-bio.TO https://arxiv.org/abs/2511.16618 False False 2511.16618 SurgSLOT: Segment Anything in Surgical Videos via Semantic Long-term Tracking 2025-11-20 cs.CV;eess.IV;q-bio.TO q-bio.TO https://arxiv.org/abs/2511.16618 False False 2511.15067 Deep Pathomic Learning Defines Prognostic Subtypes and Molecular Drivers in Colorectal Cancer 2025-11-19 cs.AI;cs.CV;cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2511.15067 False False 2511.15139 CASPER: Cross-modal Alignment of Spatial and single-cell Profiles for Expression Recovery 2025-11-19 cs.AI;cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2511.15139 False False 2511.15173 Data-driven Prediction of Species-Specific Plant Responses to Spectral-Shifting Films from Leaf Phenotypic and Photosynthetic Traits 2025-11-19 cs.CV;cs.LG;eess.IV;q-bio.QM q-bio.QM https://arxiv.org/abs/2511.15173 False False 2511.15296 Detection of spiking motifs of arbitrary length in neural activity using bounded synaptic delays 2025-11-19 q-bio.NC q-bio.NC https://arxiv.org/abs/2511.15296 False False 2511.15298 Modulating the tennis racket grip during motor imagery influences serve accuracy and performance: A pilot study 2025-11-19 q-bio.NC q-bio.NC https://arxiv.org/abs/2511.15298 False False 2511.15330 BaGGLS: A Bayesian Shrinkage Framework for Interpretable Modeling of Interactions in High-Dimensional Biological Data 2025-11-19 q-bio.GN;stat.ME;stat.ML q-bio.GN https://arxiv.org/abs/2511.15330 False False 2511.15338 Does the Muller-Lyer illusion induced by a goalkeeper configuration influence soccer penalty kicks? 2025-11-19 q-bio.NC q-bio.NC https://arxiv.org/abs/2511.15338 False False 2511.15554 Chemical systems with chaos 2025-11-19 math.DS;q-bio.MN q-bio.MN https://arxiv.org/abs/2511.15554 False False 2511.15599 Kinetic and mean-field modeling of muscular dystrophies 2025-11-19 math.AP;physics.stat-mech;q-bio.PE;q-bio.SC q-bio.PE https://arxiv.org/abs/2511.15599 False False 2511.15628 Methods for Secondary and Tertiary Structure Prediction of Microproteins 2025-11-19 q-bio.BM q-bio.BM https://arxiv.org/abs/2511.15628 False False 2511.15906 Unified all-atom molecule generation with neural fields 2025-11-19 cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2511.15906 False False 2511.15932 How Mathematical Forms of Chemotherapy and Radiotherapy Bias Model-Optimized Predictions: Implications for Model Selection 2025-11-19 q-bio.QM q-bio.QM https://arxiv.org/abs/2511.15932 False False 2511.17641 Thermodynamics + Natural Selection = Bayesian Inference 2025-11-19 physics.stat-mech;q-bio.PE q-bio.PE https://arxiv.org/abs/2511.17641 False False 2512.02028 Seizure-NGCLNet: Representation Learning of SEEG Spatial Pathological Patterns for Epileptic Seizure Detection via Node-Graph Dual Contrastive Learning 2025-11-19 cs.LG;eess.SP;q-bio.NC q-bio.NC https://arxiv.org/abs/2512.02028 False False 2512.02030 Generative design and validation of therapeutic peptides for glioblastoma based on a potential target ATP5A 2025-11-19 cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2512.02030 False False 2512.02031 Pharmacophore-based design by learning on voxel grids 2025-11-19 cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2512.02031 False False 2511.15839 Comparing Bayesian and Frequentist Inference in Biological Models: A Comparative Analysis of Accuracy, Uncertainty, and Identifiability 2025-11-19 q-bio.QM q-bio.QM https://arxiv.org/abs/2511.15839 False False 2511.15070 The role of antibody-mediated immunity in shaping the seasonality of respiratory viruses 2025-11-19 q-bio.PE q-bio.PE https://arxiv.org/abs/2511.15070 False False 2511.15839 Comparing Bayesian and Frequentist Inference in Biological Models: A Comparative Analysis of Accuracy, Uncertainty, and Identifiability 2025-11-19 q-bio.QM q-bio.QM https://arxiv.org/abs/2511.15839 False False 2511.15070 The role of antibody-mediated immunity in shaping the seasonality of respiratory viruses 2025-11-19 q-bio.PE q-bio.PE https://arxiv.org/abs/2511.15070 False False 2511.15070 The role of antibody-mediated immunity in shaping the seasonality of respiratory viruses 2025-11-19 q-bio.PE q-bio.PE https://arxiv.org/abs/2511.15070 False False 2511.14388 Integral Bayesian symbolic regression for optimal discovery of governing equations from scarce and noisy data 2025-11-18 math.DS;physics.bio-ph;physics.data-an;q-bio.QM q-bio.QM https://arxiv.org/abs/2511.14388 False False 2511.14431 BiRNe: Symbolic bifurcation analysis of reaction networks with Python 2025-11-18 math.DS;q-bio.MN q-bio.MN https://arxiv.org/abs/2511.14431 False False 2511.14453 Multi-network Topology Underlying Individual Language Learning Success 2025-11-18 q-bio.NC q-bio.NC https://arxiv.org/abs/2511.14453 False False 2511.14559 Apo2Mol: 3D Molecule Generation via Dynamic Pocket-Aware Diffusion Models 2025-11-18 cs.AI;cs.LG;q-bio.BM;q-bio.QM q-bio.BM https://arxiv.org/abs/2511.14559 False False 2511.14663 ApexGen: Simultaneous design of peptide binder sequence and structure for target proteins 2025-11-18 q-bio.BM q-bio.BM https://arxiv.org/abs/2511.14663 False False 2511.14669 Hyperbolic Graph Embeddings Reveal the Host-Pathogen Interactome 2025-11-18 q-bio.MN q-bio.MN https://arxiv.org/abs/2511.14669 False False 2511.14676 Exploring AlphaFold 3 for CD47 Antibody-Antigen Binding Affinity: An Unexpected Discovery of Reverse docking 2025-11-18 q-bio.BM q-bio.BM https://arxiv.org/abs/2511.14676 False False 2511.14694 Near-Lossless Model Compression Enables Longer Context Inference in DNA Large Language Models 2025-11-18 cs.AI;cs.LG;q-bio.GN;q-bio.PE q-bio.GN https://arxiv.org/abs/2511.14694 False False 2511.14826 Leveraging NCBI Genomic Metadata for Epidemiological Insights: Example of Enterobacterales 2025-11-18 q-bio.QM q-bio.QM https://arxiv.org/abs/2511.14826 False False 2511.14909 Izzy: a high-throughput metagenomic read simulator 2025-11-18 q-bio.QM q-bio.QM https://arxiv.org/abs/2511.14909 False False 2511.14917 Teaching signal synchronization in deep neural networks with prospective neurons 2025-11-18 cs.NE;q-bio.NC q-bio.NC https://arxiv.org/abs/2511.14917 False False 2511.14962 Reconstruction of three-dimensional shapes of normal and disease-related erythrocytes from partial observations using multi-fidelity neural networks 2025-11-18 cs.LG;eess.IV;physics.bio-ph;physics.comp-ph;q-bio.QM q-bio.QM https://arxiv.org/abs/2511.14962 False False 2511.15736 How many outbreaks before an epidemic? 2025-11-18 math.PR;math.ST;q-bio.PE;stat.TH q-bio.PE https://arxiv.org/abs/2511.15736 False False 2511.14872 Maximum entropy models of neuronal populations at and off criticality 2025-11-18 q-bio.NC q-bio.NC https://arxiv.org/abs/2511.14872 False False 2511.17611 AI-driven Generation of MALDI-TOF MS for Microbial Characterization 2025-11-18 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2511.17611 False False 2511.17627 An Ecologically-Informed Deep Learning Framework for Interpretable and Validatable Habitat Mapping 2025-11-18 cs.LG;q-bio.PE q-bio.PE https://arxiv.org/abs/2511.17627 False False 2511.14466 Effect of Dopamine in Enhancement of SNR of Cortico-Striatal-Thalamo-Cortical Loop Spiking 2025-11-18 q-bio.NC q-bio.NC https://arxiv.org/abs/2511.14466 False False 2511.14188 A region-specific brain dysfunction underlies cognitive impairment in long COVID brain fog 2025-11-18 q-bio.NC q-bio.NC https://arxiv.org/abs/2511.14188 False False 2511.14090 Evolutionary Hysteresis: Cycling about in a Rugged Landscape 2025-11-18 q-bio.PE q-bio.PE https://arxiv.org/abs/2511.14090 False False 2511.14083 Fully Automated Deep Learning Based Glenoid Bone Loss Measurement and Severity Stratification on 3D CT in Shoulder Instability 2025-11-18 cs.AI;cs.CV;q-bio.QM q-bio.QM https://arxiv.org/abs/2511.14083 False False 2511.14065 Intrinsic Resonance depends on Network Size of Coupled-Delayed Interacting Oscillators 2025-11-18 cs.SY;eess.SY;q-bio.NC q-bio.NC https://arxiv.org/abs/2511.14065 False False 2511.14555 DecNefSimulator: A Modular, Interpretable Framework for Decoded Neurofeedback Simulation Using Generative Models 2025-11-18 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2511.14555 False False 2511.14555 DecNefSimulator: A Modular, Interpretable Framework for Decoded Neurofeedback Simulation Using Generative Models 2025-11-18 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2511.14555 False False 2511.14555 DecNefSimulator: A Modular, Interpretable Framework for Decoded Neurofeedback Simulation Using Generative Models 2025-11-18 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2511.14555 False False 2511.14872 Maximum entropy models of neuronal populations at and off criticality 2025-11-18 q-bio.NC q-bio.NC https://arxiv.org/abs/2511.14872 False False 2511.14872 Maximum entropy models of neuronal populations at and off criticality 2025-11-18 q-bio.NC q-bio.NC https://arxiv.org/abs/2511.14872 False False 2511.14917 Teaching signal synchronization in deep neural networks with prospective neurons 2025-11-18 cs.NE;q-bio.NC q-bio.NC https://arxiv.org/abs/2511.14917 False False 2511.14917 Teaching signal synchronization in deep neural networks with prospective neurons 2025-11-18 cs.NE;q-bio.NC q-bio.NC https://arxiv.org/abs/2511.14917 False False 2511.12843 Treatment of phenol wastewater by electro-Fenton oxidative degradation based on efficient iron-based-gas diffusion-photocatalysis 2025-11-17 q-bio.BM q-bio.BM https://arxiv.org/abs/2511.12843 False False 2511.12975 Dynamics of stochastic microorganism flocculation models 2025-11-17 math.PR;q-bio.PE q-bio.PE https://arxiv.org/abs/2511.12975 False False 2511.12990 Brain Networks Flow-Topology via Variance Minimization in the Wasserstein Space 2025-11-17 q-bio.QM q-bio.QM https://arxiv.org/abs/2511.12990 False False 2511.13124 Departures: Distributional Transport for Single-Cell Perturbation Prediction with Neural Schrödinger Bridges 2025-11-17 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2511.13124 False False 2511.13141 Bridging the genotype-phenotype gap with generative artificial intelligence 2025-11-17 q-bio.QM q-bio.QM https://arxiv.org/abs/2511.13141 False False 2511.13295 Causal Inference, Biomarker Discovery, Graph Neural Network, Feature Selection 2025-11-17 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2511.13295 False False 2511.13501 Modeling Spatial Synchronization of Predator-Prey Oscillations via the XY Model under Demographic Stochasticity and Migration 2025-11-17 q-bio.PE q-bio.PE https://arxiv.org/abs/2511.13501 False False 2511.13583 Evaluating and Scoring Ebolavirus Protein-protein Docking Models Using PIsToN 2025-11-17 q-bio.BM q-bio.BM https://arxiv.org/abs/2511.13583 False False 2511.13611 BIOMERO 2.0: end-to-end FAIR infrastructure for bioimaging data import, analysis, and provenance 2025-11-17 cs.SE;q-bio.QM q-bio.QM https://arxiv.org/abs/2511.13611 False False 2511.13668 Integrative Model for Interoception and Exteroception: predictive coding, points of modulation, and testable predictions 2025-11-17 q-bio.NC q-bio.NC https://arxiv.org/abs/2511.13668 False False 2511.13705 Rare Genomic Subtype Discovery from RNA-seq via Autoencoder Embeddings and Stability-Aware Clustering 2025-11-17 cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2511.13705 False False 2511.13797 MAT-MPNN: A Mobility-Aware Transformer-MPNN Model for Dynamic Spatiotemporal Prediction of HIV Diagnoses in California, Florida, and New England 2025-11-17 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2511.13797 False False 2511.13899 A Disentangled Low-Rank RNN Framework for Uncovering Neural Connectivity and Dynamics 2025-11-17 cs.CE;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2511.13899 False False 2511.13901 Stoichiometric ontogenetic development influences population dynamics: Stage-structured model under nutrient co-limitations 2025-11-17 math.DS;q-bio.PE q-bio.PE https://arxiv.org/abs/2511.13901 False False 2511.13916 Structural Flexibility of the TCF7L2-DNA Complex with the Type 2 Diabetes SNP rs7903146 2025-11-17 q-bio.BM q-bio.BM https://arxiv.org/abs/2511.13916 False False 2511.13954 A Brain Wave Encodes a Thousand Tokens: Modeling Inter-Cortical Neural Interactions for Effective EEG-based Emotion Recognition 2025-11-17 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2511.13954 False False 2511.13960 Classification of Aortic Shape with Topographical Pair Correlation Functions 2025-11-17 q-bio.TO q-bio.TO https://arxiv.org/abs/2511.13960 False False 2511.12931 cryoSENSE: Compressive Sensing Enables High-throughput Microscopy with Sparse and Generative Priors on the Protein Cryo-EM Image Manifold 2025-11-17 eess.IV;q-bio.BM q-bio.BM https://arxiv.org/abs/2511.12931 False False 2511.14806 MergeDNA: Context-aware Genome Modeling with Dynamic Tokenization through Token Merging 2025-11-17 cs.AI;cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2511.14806 False False 2511.13799 Symbiotic causal network of seagrass-bacteria-algae-diatoms interactions 2025-11-17 q-bio.QM q-bio.QM https://arxiv.org/abs/2511.13799 False False 2511.13550 MDIntrinsicDimension: Dimensionality-Based Analysis of Collective Motions in Macromolecules from Molecular Dynamics Trajectories 2025-11-17 physics.comp-ph;q-bio.BM q-bio.BM https://arxiv.org/abs/2511.13550 False False 2511.12931 cryoSENSE: Compressive Sensing Enables High-throughput Microscopy with Sparse and Generative Priors on the Protein Cryo-EM Image Manifold 2025-11-17 eess.IV;q-bio.BM q-bio.BM https://arxiv.org/abs/2511.12931 False False 2511.13611 BIOMERO 2.0: end-to-end FAIR infrastructure for bioimaging data import, analysis, and provenance 2025-11-17 cs.SE;q-bio.QM q-bio.QM https://arxiv.org/abs/2511.13611 False False 2511.13611 BIOMERO 2.0: end-to-end FAIR infrastructure for bioimaging data import, analysis, and provenance 2025-11-17 cs.SE;q-bio.QM q-bio.QM https://arxiv.org/abs/2511.13611 False False 2511.13899 A Factorized Low-Rank RNN Framework for Uncovering Independent Neural Latent Dynamics and Connectivity 2025-11-17 cs.CE;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2511.13899 False False 2511.12536 A mark and recapture perspective on vaccination touchpoints 2025-11-16 q-bio.PE q-bio.PE https://arxiv.org/abs/2511.12536 False False 2511.12715 Predicting upcoming visual features during eye movements yields scene representations aligned with human visual cortex 2025-11-16 cs.CV;q-bio.NC q-bio.NC https://arxiv.org/abs/2511.12715 False False 2511.12805 Practical Causal Evaluation Metrics for Biological Networks 2025-11-16 cs.LG;q-bio.MN q-bio.MN https://arxiv.org/abs/2511.12805 False False 2511.13786 CellStream: Dynamical Optimal Transport Informed Embeddings for Reconstructing Cellular Trajectories from Snapshots Data 2025-11-16 cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2511.13786 False False 2511.13790 GeoPl@ntNet: A Platform for Exploring Essential Biodiversity Variables 2025-11-16 cs.AI;q-bio.QM q-bio.QM https://arxiv.org/abs/2511.13790 False False 2511.13791 XAI-Driven Deep Learning for Protein Sequence Functional Group Classification 2025-11-16 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2511.13791 False False 2511.12797 Genomic Next-Token Predictors are In-Context Learners 2025-11-16 cs.AI;cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2511.12797 False False 2511.12463 Explainable deep learning framework for cancer therapeutic target prioritization leveraging PPI centrality and node embeddings 2025-11-16 q-bio.QM q-bio.QM https://arxiv.org/abs/2511.12463 False False 2511.12459 The Probabilistic Foundations of Surveillance Failure: From False Alerts to Structural Bias 2025-11-16 cs.CY;math.PR;q-bio.QM;stat.AP;stat.ME q-bio.QM https://arxiv.org/abs/2511.12459 False False 2511.12797 Genomic Next-Token Predictors are In-Context Learners 2025-11-16 cs.AI;cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2511.12797 False False 2511.13790 GeoPl@ntNet: A Platform for Exploring Essential Biodiversity Variables 2025-11-16 cs.AI;q-bio.QM q-bio.QM https://arxiv.org/abs/2511.13790 False False 2511.13790 GeoPl@ntNet: A Platform for Exploring Essential Biodiversity Variables 2025-11-16 cs.AI;q-bio.QM q-bio.QM https://arxiv.org/abs/2511.13790 False False 2511.12161 Agent-Based Modelling in Cellular Biology - Are we flexible yet? 2025-11-15 q-bio.CB q-bio.CB https://arxiv.org/abs/2511.12161 False False 2511.12183 DNA Replication Timing, Genome Stability and Non-adaptive Radiation 2025-11-15 q-bio.PE q-bio.PE https://arxiv.org/abs/2511.12183 False False 2511.12223 AMR-MoEGA: Antimicrobial Resistance Prediction using Mixture of Experts and Genetic Algorithms 2025-11-15 q-bio.PE q-bio.PE https://arxiv.org/abs/2511.12223 False False 2511.12135 RTMol: Rethinking Molecule-text Alignment in a Round-trip View 2025-11-15 cs.AI;cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2511.12135 False False 2511.11986 "Comment on ""Repair of DNA Double-Strand Breaks Leaves Heritable Impairment to Genome Function""" 2025-11-15 q-bio.CB;q-bio.SC q-bio.CB https://arxiv.org/abs/2511.11986 False False 2511.19444 "Comment on ""Direct Targeting and Regulation of RNA Polymerase II by Cell Signaling Kinases""" 2025-11-15 q-bio.CB;q-bio.MN;q-bio.SC q-bio.CB https://arxiv.org/abs/2511.19444 False False 2511.12205 LCPan: efficient variation graph construction using Locally Consistent Parsing 2025-11-15 q-bio.GN q-bio.GN https://arxiv.org/abs/2511.12205 False False 2511.12205 LCPan: efficient variation graph construction using Locally Consistent Parsing 2025-11-15 q-bio.GN q-bio.GN https://arxiv.org/abs/2511.12205 False False 2511.12205 LCPan: efficient variation graph construction using Locally Consistent Parsing 2025-11-15 q-bio.GN q-bio.GN https://arxiv.org/abs/2511.12205 False False 2511.10935 CAT-Net: A Cross-Attention Tone Network for Cross-Subject EEG-EMG Fusion Tone Decoding 2025-11-14 cs.LG;cs.SD;q-bio.NC q-bio.NC https://arxiv.org/abs/2511.10935 False False 2511.10947 Sensitivity of Finite Element Models to Relationship Between T2 Relaxation and Modulus in Articular Cartilage 2025-11-14 eess.IV;q-bio.TO q-bio.TO https://arxiv.org/abs/2511.10947 False False 2511.11080 Advanced Data Analysis of Spontaneous Biophoton Emission: A Multi-Method Approach 2025-11-14 physics.AO;physics.bio-ph;physics.data-an;q-bio.QM q-bio.QM https://arxiv.org/abs/2511.11080 False False 2511.11128 Effects of diode laser photobiomodulation on peri-implant inflammation and stability in orthodontic mini-implants: A randomized controlled trial 2025-11-14 physics.med-ph;q-bio.BM q-bio.BM https://arxiv.org/abs/2511.11128 False False 2511.11130 Animal social networks as intersections graphs of random walks 2025-11-14 math.PR;physics.soc-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2511.11130 False False 2511.11452 Synergy vs. Noise: Performance-Guided Multimodal Fusion For Biochemical Recurrence-Free Survival in Prostate Cancer 2025-11-14 cs.CV;cs.LG;eess.IV;q-bio.QM q-bio.QM https://arxiv.org/abs/2511.11452 False False 2511.11463 A universal theorem of sensory information 2025-11-14 q-bio.NC q-bio.NC https://arxiv.org/abs/2511.11463 False False 2511.11486 Multimodal Posterior Sampling-based Uncertainty in PD-L1 Segmentation from H&E Images 2025-11-14 cs.CV;q-bio.QM q-bio.QM https://arxiv.org/abs/2511.11486 False False 2511.11515 PEtab-GUI: A graphical user interface to create, edit and inspect PEtab parameter estimation problems 2025-11-14 q-bio.QM q-bio.QM https://arxiv.org/abs/2511.11515 False False 2511.11769 Socrates-Mol: Self-Oriented Cognitive Reasoning through Autonomous Trial-and-Error with Empirical-Bayesian Screening for Molecules 2025-11-14 cs.LG;physics.chem-ph;q-bio.QM;stat.ME q-bio.QM https://arxiv.org/abs/2511.11769 False False 2511.11860 Understanding Molecular Basis of PTPN11-Related Diseases 2025-11-14 q-bio.BM q-bio.BM https://arxiv.org/abs/2511.11860 False False 2511.11913 SarcGraph for High-Throughput Regional Analysis of Sarcomere Organization and Contractile Function in 2D Cardiac Muscle Bundles 2025-11-14 q-bio.QM q-bio.QM https://arxiv.org/abs/2511.11913 False False 2511.13762 Gene Incremental Learning for Single-Cell Transcriptomics 2025-11-14 cs.AI;cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2511.13762 False False 2511.11480 Inferring response times of perceptual decisions with Poisson variational autoencoders 2025-11-14 cs.AI;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2511.11480 False False 2511.20670 Phase Plane Analysis of Firing Patterns in the Adaptive Exponential Integrate-and-Fire Model 2025-11-14 physics.bio-ph;q-bio.NC q-bio.NC https://arxiv.org/abs/2511.20670 False False 2511.11293 Toward Scalable Early Cancer Detection: Evaluating EHR-Based Predictive Models Against Traditional Screening Criteria 2025-11-14 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2511.11293 False False 2511.09928 mRNA-protein assembly reduces fluctuations in a system with bursty transcription 2025-11-13 q-bio.SC q-bio.SC https://arxiv.org/abs/2511.09928 False False 2511.09949 Imaging the Topology of Dynamic Brain Connectivity 2025-11-13 q-bio.NC q-bio.NC https://arxiv.org/abs/2511.09949 False False 2511.09963 The Age-Structured Chemostat with Substrate Dynamics as a Control System 2025-11-13 cs.SY;eess.SY;math.AP;math.OC;q-bio.PE q-bio.PE https://arxiv.org/abs/2511.09963 False False 2511.10014 fastbmRAG: A Fast Graph-Based RAG Framework for Efficient Processing of Large-Scale Biomedical Literature 2025-11-13 cs.AI;q-bio.QM q-bio.QM https://arxiv.org/abs/2511.10014 False False 2511.10165 EPO: Diverse and Realistic Protein Ensemble Generation via Energy Preference Optimization 2025-11-13 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2511.10165 False False 2511.10184 Theoretical Analysis of Resource-Induced Phase Transitions in Estimation Strategies 2025-11-13 math.OC;physics.bio-ph;q-bio.NC;q-bio.SC q-bio.NC https://arxiv.org/abs/2511.10184 False False 2511.10286 Diversity Over Scale: Whole-Slide Image Variety Enables H&E Foundation Model Training with Fewer Patches 2025-11-13 q-bio.TO q-bio.TO https://arxiv.org/abs/2511.10286 False False 2511.10337 Stochastic Thermodynamics of Cooperative Biomolecular Machines: Fluctuation Relations and Hidden Detailed Balance Breaking 2025-11-13 physics.bio-ph;physics.chem-ph;physics.stat-mech;q-bio.MN q-bio.MN https://arxiv.org/abs/2511.10337 False False 2511.10432 Histology-informed tiling of whole tissue sections improves the interpretability and predictability of cancer relapse and genetic alterations 2025-11-13 cs.CV;q-bio.QM;q-bio.TO q-bio.QM https://arxiv.org/abs/2511.10432 False False 2511.10609 Multistationarity in semi-open Phosphorylation-Dephosphorylation Cycles 2025-11-13 math.DS;q-bio.MN q-bio.MN https://arxiv.org/abs/2511.10609 False False 2511.10708 MOSAIC: Codon Harmonization of Monte Carlo-Based Simulated Annealing for Linked Codons in Heterologous Protein Expression 2025-11-13 q-bio.QM q-bio.QM https://arxiv.org/abs/2511.10708 False False 2511.10757 Habit learning is associated with efficiently controlled network dynamics in naive macaque monkeys 2025-11-13 q-bio.NC q-bio.NC https://arxiv.org/abs/2511.10757 False False 2511.10807 Invading activity fronts stabilize excitable systems against stochastic extinction 2025-11-13 physics.stat-mech;q-bio.PE q-bio.PE https://arxiv.org/abs/2511.10807 False False 2511.15721 10 simple rules for data-model integration in theoretical ecology 2025-11-13 q-bio.PE q-bio.PE https://arxiv.org/abs/2511.15721 False False 2511.10261 Representation learning in cerebellum-like structures 2025-11-13 q-bio.NC q-bio.NC https://arxiv.org/abs/2511.10261 False False 2511.10835 What the flock knows that the birds do not: exploring the emergence of joint agency in multi-agent active inference 2025-11-13 cs.MA;math.OC;physics.AO;q-bio.NC q-bio.NC https://arxiv.org/abs/2511.10835 False False 2511.11758 Protein Structure Tokenization via Geometric Byte Pair Encoding 2025-11-13 cs.AI;q-bio.QM q-bio.QM https://arxiv.org/abs/2511.11758 False False 2511.10223 Stochastic Reaction Networks Within Interacting Compartments with Content-Dependent Fragmentation 2025-11-13 math.PR;q-bio.MN q-bio.MN https://arxiv.org/abs/2511.10223 False False 2511.10708 MOSAIC: Codon Harmonization of Monte Carlo-Based Simulated Annealing for Linked Codons in Heterologous Protein Expression 2025-11-13 q-bio.QM q-bio.QM https://arxiv.org/abs/2511.10708 False False 2511.10223 Stochastic Reaction Networks Within Interacting Compartments with Content-Dependent Fragmentation 2025-11-13 math.PR;q-bio.MN q-bio.MN https://arxiv.org/abs/2511.10223 False False 2511.10223 Stochastic Reaction Networks Within Interacting Compartments with Content-Dependent Fragmentation 2025-11-13 math.PR;q-bio.MN q-bio.MN https://arxiv.org/abs/2511.10223 False False 2511.15721 8 quick tips for data-model integration in ecology 2025-11-13 q-bio.PE q-bio.PE https://arxiv.org/abs/2511.15721 False False 2511.15721 8 quick tips for data-model integration in ecology 2025-11-13 q-bio.PE q-bio.PE https://arxiv.org/abs/2511.15721 False False 2511.10708 MOSAIC: Codon Harmonization of Monte Carlo-Based Simulated Annealing for Linked Codons in Heterologous Protein Expression 2025-11-13 q-bio.QM q-bio.QM https://arxiv.org/abs/2511.10708 False False 2511.10708 MOSAIC: Codon Harmonization of Monte Carlo-Based Simulated Annealing for Linked Codons in Heterologous Protein Expression 2025-11-13 q-bio.QM q-bio.QM https://arxiv.org/abs/2511.10708 False False 2511.10223 Stochastic Reaction Networks Within Interacting Compartments with Content-Dependent Fragmentation 2025-11-13 math.PR;q-bio.MN q-bio.MN https://arxiv.org/abs/2511.10223 False False 2511.10708 MOSAIC: Codon Harmonization of Monte Carlo-Based Simulated Annealing for Linked Codons in Heterologous Protein Expression 2025-11-13 q-bio.QM q-bio.QM https://arxiv.org/abs/2511.10708 False False 2511.10708 MOSAIC: Codon Harmonization of Monte Carlo-Based Simulated Annealing for Linked Codons in Heterologous Protein Expression 2025-11-13 q-bio.QM q-bio.QM https://arxiv.org/abs/2511.10708 False False 2511.15721 8 quick tips for data-model integration in ecology 2025-11-13 q-bio.PE q-bio.PE https://arxiv.org/abs/2511.15721 False False 2511.15721 8 quick tips for data-model integration in ecology 2025-11-13 q-bio.PE q-bio.PE https://arxiv.org/abs/2511.15721 False False 2511.10184 Theoretical Analysis of Resource-Induced Phase Transitions in Estimation Strategies 2025-11-13 math.OC;physics.bio-ph;q-bio.NC;q-bio.SC q-bio.NC https://arxiv.org/abs/2511.10184 False False 2511.10184 Theoretical Analysis of Resource-Induced Phase Transitions in Estimation Strategies 2025-11-13 math.OC;physics.bio-ph;q-bio.NC;q-bio.SC q-bio.NC https://arxiv.org/abs/2511.10184 False False 2511.08847 Data-driven spatiotemporal modeling reveals personalized trajectories of cortical atrophy in Alzheimer's disease 2025-11-12 math.DS;q-bio.NC q-bio.NC https://arxiv.org/abs/2511.08847 False False 2511.08921 DeepDR: an integrated deep-learning model web server for drug repositioning 2025-11-12 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2511.08921 False False 2511.09017 OMOP ETL Framework for Semi-Structured Health Data 2025-11-12 q-bio.QM q-bio.QM https://arxiv.org/abs/2511.09017 False False 2511.09026 DeepVRegulome: DNABERT-based deep-learning framework for predicting the functional impact of short genomic variants on the human regulome 2025-11-12 cs.AI;cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2511.09026 False False 2511.09183 Measuring irreversibility in stochastic systems by categorizing single-molecule displacements 2025-11-12 physics.stat-mech;q-bio.BM;q-bio.QM q-bio.BM https://arxiv.org/abs/2511.09183 False False 2511.09196 Genuine and spurious bistability in a simple epidemic model with waning immunity 2025-11-12 math.DS;q-bio.PE q-bio.PE https://arxiv.org/abs/2511.09196 False False 2511.09216 Controllable protein design through Feynman-Kac steering 2025-11-12 cs.LG;q-bio.QM;stat.ML q-bio.QM https://arxiv.org/abs/2511.09216 False False 2511.09243 Characterizing sleep stages through the complexity-entropy plane in human intracranial data and in a whole-brain model 2025-11-12 physics.bio-ph;q-bio.NC q-bio.NC https://arxiv.org/abs/2511.09243 False False 2511.09290 Multi-step Predictive Coding Leads To Simplicity Bias 2025-11-12 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2511.09290 False False 2511.09295 Simulating Mono-and Multi-Protein Phosphorylation within Nanoclusters 2025-11-12 physics.bio-ph;q-bio.SC q-bio.SC https://arxiv.org/abs/2511.09295 False False 2511.09574 HAMscope: a snapshot Hyperspectral Autofluorescence Miniscope for real-time molecular imaging 2025-11-12 eess.IV;physics.optics;q-bio.QM q-bio.QM https://arxiv.org/abs/2511.09574 False False 2511.09576 Prostate-VarBench: A Benchmark with Interpretable TabNet Framework for Prostate Cancer Variant Classification 2025-11-12 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2511.09576 False False 2511.09581 Clinically-aligned Multi-modal Chest X-ray Classification 2025-11-12 eess.IV;q-bio.QM q-bio.QM https://arxiv.org/abs/2511.09581 False False 2511.09588 Diffusion-Based Quality Control of Medical Image Segmentations across Organs 2025-11-12 eess.IV;q-bio.QM q-bio.QM https://arxiv.org/abs/2511.09588 False False 2511.09590 A Graphical Method for Identifying Gene Clusters from RNA Sequencing Data 2025-11-12 q-bio.GN q-bio.GN https://arxiv.org/abs/2511.09590 False False 2511.09594 A master equation approach to the n-coalescent problem 2025-11-12 physics.stat-mech;q-bio.PE q-bio.PE https://arxiv.org/abs/2511.09594 False False 2511.09636 Prebiotic Chemistry Insights for Dragonfly: Thermodynamics of Amino Acid Synthesis in Selk Crater on Titan 2025-11-12 physics.EP;physics.chem-ph;q-bio.BM q-bio.BM https://arxiv.org/abs/2511.09636 False False 2511.09765 Brian Intensify: An Adaptive Machine Learning Framework for Auditory EEG Stimulation and Cognitive Enhancement in FXS 2025-11-12 cs.AI;cs.LG;eess.SP;q-bio.NC q-bio.NC https://arxiv.org/abs/2511.09765 False False 2511.09583 Exhaustive Investigation of CBC-Derived Biomarker Ratios for Clinical Outcome Prediction: The RDW-to-MCHC Ratio as a Novel Mortality Predictor in Critical Care 2025-11-12 q-bio.QM q-bio.QM https://arxiv.org/abs/2511.09583 False False 2511.11717 Multiscale Grassmann Manifolds for Single-Cell Data Analysis 2025-11-12 cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2511.11717 False False 2511.09605 TomoGraphView: 3D Medical Image Classification with Omnidirectional Slice Representations and Graph Neural Networks 2025-11-12 cs.AI;cs.LG;eess.IV;q-bio.QM q-bio.QM https://arxiv.org/abs/2511.09605 False False 2511.09506 A thermoinformational formulation for the description of neuropsychological systems 2025-11-12 q-bio.NC;stat.AP q-bio.NC https://arxiv.org/abs/2511.09506 False False 2511.08855 Path Signatures Enable Model-Free Mapping of RNA Modifications 2025-11-12 q-bio.GN;stat.ML q-bio.GN https://arxiv.org/abs/2511.08855 False False 2511.08996 Partial domain adaptation enables cross domain cell type annotation between scRNA-seq and snRNA-seq 2025-11-12 q-bio.GN q-bio.GN https://arxiv.org/abs/2511.08996 False False 2511.09588 Diffusion-Based Quality Control of Medical Image Segmentations across Organs 2025-11-12 eess.IV;q-bio.QM q-bio.QM https://arxiv.org/abs/2511.09588 False False 2511.09216 Controllable protein design with particle-based Feynman-Kac steering 2025-11-12 cs.LG;q-bio.QM;stat.ML q-bio.QM https://arxiv.org/abs/2511.09216 False False 2511.09290 Prediction horizon shapes representations in predictive learning 2025-11-12 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2511.09290 False False 2511.09290 Prediction horizon shapes representations in predictive learning 2025-11-12 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2511.09290 False False 2511.09183 Experimentally accessible measurement of irreversibility in stochastic systems by categorizing single-molecule displacements 2025-11-12 physics.stat-mech;q-bio.BM;q-bio.QM q-bio.BM https://arxiv.org/abs/2511.09183 False False 2511.09183 Experimentally accessible measurement of irreversibility in stochastic systems by categorizing single-molecule displacements 2025-11-12 physics.stat-mech;q-bio.BM;q-bio.QM q-bio.BM https://arxiv.org/abs/2511.09183 False False 2511.09588 Diffusion-Based Quality Control of Medical Image Segmentations across Organs 2025-11-12 eess.IV;q-bio.QM q-bio.QM https://arxiv.org/abs/2511.09588 False False 2511.09588 Diffusion-Based Quality Control of Medical Image Segmentations across Organs 2025-11-12 eess.IV;q-bio.QM q-bio.QM https://arxiv.org/abs/2511.09588 False False 2511.09588 Diffusion-Based Quality Control of Medical Image Segmentations across Organs 2025-11-12 eess.IV;q-bio.QM q-bio.QM https://arxiv.org/abs/2511.09588 False False 2511.09588 Diffusion-Based Quality Control of Medical Image Segmentations across Organs 2025-11-12 eess.IV;q-bio.QM q-bio.QM https://arxiv.org/abs/2511.09588 False False 2511.09026 DeepVRegulome: DNABERT-based deep-learning framework for predicting the functional impact of short genomic variants on the human regulome 2025-11-12 cs.AI;cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2511.09026 False False 2511.09026 DeepVRegulome: DNABERT-based deep-learning framework for predicting the functional impact of short genomic variants on the human regulome 2025-11-12 cs.AI;cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2511.09026 False False 2511.07825 Inferring Hidden Motives: Bayesian Models of Preference Learning in Repeated Dictator Games 2025-11-11 q-bio.NC q-bio.NC https://arxiv.org/abs/2511.07825 False False 2511.07847 Matters of Life and Death in Computational Cell Biology 2025-11-11 math.DS;q-bio.CB q-bio.CB https://arxiv.org/abs/2511.07847 False False 2511.07960 Advancing credibility and transparency in brain-to-image reconstruction research: Reanalysis of Koide-Majima, Nishimoto, and Majima (Neural Networks, 2024) 2025-11-11 q-bio.NC q-bio.NC https://arxiv.org/abs/2511.07960 False False 2511.08292 Distance by de-correlation: Computing distance with heterogeneous grid cells 2025-11-11 q-bio.NC q-bio.NC https://arxiv.org/abs/2511.08292 False False 2511.08411 PHD-MS: Multiscale Domain Identification for Spatial Transcriptomics via Persistent Homology 2025-11-11 q-bio.QM q-bio.QM https://arxiv.org/abs/2511.08411 False False 2511.08436 Understanding Electro-communication and Electro-sensing in Weakly Electric Fish using Multi-Agent Deep Reinforcement Learning 2025-11-11 cs.AI;cs.MA;cs.NE;cs.SY;eess.SY;q-bio.NC q-bio.NC https://arxiv.org/abs/2511.08436 False False 2511.08531 Cognition as least action: the Physarum Lagrangian 2025-11-11 math.OC;physics.bio-ph;q-bio.CB;q-bio.NC q-bio.CB https://arxiv.org/abs/2511.08531 False False 2511.08554 A bioreactor-based architecture for in vivo model-based and sim-to-real learning control of microbial consortium composition 2025-11-11 cs.SY;eess.SY;q-bio.QM q-bio.QM https://arxiv.org/abs/2511.08554 False False 2511.08564 Genetically encoding stimulated Raman-scattering probes for cell imaging using infrared fluorescent proteins 2025-11-11 physics.bio-ph;physics.chem-ph;q-bio.BM q-bio.BM https://arxiv.org/abs/2511.08564 False False 2511.08649 Bio AI Agent: A Multi-Agent Artificial Intelligence System for Autonomous CAR-T Cell Therapy Development with Integrated Target Discovery, Toxicity Prediction, and Rational Molecular Design 2025-11-11 cs.AI;q-bio.QM q-bio.QM https://arxiv.org/abs/2511.08649 False False 2511.08802 Backcasting biodiversity at high spatiotemporal resolution using flexible site-occupancy models for opportunistically sampled citizen science data 2025-11-11 q-bio.PE;q-bio.QM;stat.AP q-bio.PE https://arxiv.org/abs/2511.08802 False False 2511.08648 Compact Artificial Neural Network Models for Predicting Protein Residue -- RNA Base Binding 2025-11-11 cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2511.08648 False False 2511.09571 General Intelligence-based Fragmentation (GIF): A framework for peak-labeled spectra simulation 2025-11-11 cs.AI;q-bio.QM q-bio.QM https://arxiv.org/abs/2511.09571 False False 2511.09592 Segment Any Tumour: An Uncertainty-Aware Vision Foundation Model for Whole-Body Analysis 2025-11-11 eess.IV;q-bio.QM q-bio.QM https://arxiv.org/abs/2511.09592 False False 2511.13739 Subject-Independent Imagined Speech Detection via Cross-Subject Generalization and Calibration 2025-11-11 cs.AI;cs.SD;q-bio.NC q-bio.NC https://arxiv.org/abs/2511.13739 False False 2511.08101 Direction and speed selectivity properties for spatio-temporal receptive fields according to the generalized Gaussian derivative model for visual receptive fields 2025-11-11 q-bio.NC q-bio.NC https://arxiv.org/abs/2511.08101 False False 2511.07847 Matters of Life and Death in Computational Cell Biology 2025-11-11 math.DS;q-bio.CB q-bio.CB https://arxiv.org/abs/2511.07847 False False 2511.07847 Matters of Life and Death in Computational Cell Biology 2025-11-11 math.DS;q-bio.CB q-bio.CB https://arxiv.org/abs/2511.07847 False False 2511.08292 Distance by de-correlation: Computing distance with heterogeneous grid cells 2025-11-11 q-bio.NC q-bio.NC https://arxiv.org/abs/2511.08292 False False 2511.08292 Distance by de-correlation: Computing distance with heterogeneous grid cells 2025-11-11 q-bio.NC q-bio.NC https://arxiv.org/abs/2511.08292 False False 2511.08436 Active Electrosensing and Communication in MARL-trained Weakly Electric Fish Collectives 2025-11-11 cs.AI;cs.MA;cs.NE;cs.SY;eess.SY;q-bio.NC q-bio.NC https://arxiv.org/abs/2511.08436 False False 2511.08436 Active Electrosensing and Communication in MARL-trained Weakly Electric Fish Collectives 2025-11-11 cs.AI;cs.MA;cs.NE;cs.SY;eess.SY;q-bio.NC q-bio.NC https://arxiv.org/abs/2511.08436 False False 2511.07825 Inferring Hidden Motives: A Utility Bayesian Model of learning the values of others 2025-11-11 q-bio.NC q-bio.NC https://arxiv.org/abs/2511.07825 False False 2511.07825 Inferring Hidden Motives: A Utility Bayesian Model of learning the values of others 2025-11-11 q-bio.NC q-bio.NC https://arxiv.org/abs/2511.07825 False False 2511.06585 Learning Biomolecular Motion: The Physics-Informed Machine Learning Paradigm 2025-11-10 cs.LG;physics.comp-ph;q-bio.BM;stat.ML q-bio.BM https://arxiv.org/abs/2511.06585 False False 2511.06602 A Causal Formulation of Spike-Wave Duality 2025-11-10 q-bio.NC;stat.ME q-bio.NC https://arxiv.org/abs/2511.06602 False False 2511.06662 Dual-Pathway Fusion of EHRs and Knowledge Graphs for Predicting Unseen Drug-Drug Interactions 2025-11-10 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2511.06662 False False 2511.06697 Emergent self-inhibition governs the landscape of stable states in complex ecosystems 2025-11-10 physics.dis-nn;physics.stat-mech;q-bio.PE q-bio.PE https://arxiv.org/abs/2511.06697 False False 2511.06904 Theory of Semi-discontinuous DNA Replication 2025-11-10 physics.bio-ph;physics.soft;q-bio.QM q-bio.QM https://arxiv.org/abs/2511.06904 False False 2511.06930 De Novo Design of SIK3 Inhibitors via Feedback-Driven Fine-Tuning of Seq2Seq-VAE 2025-11-10 q-bio.BM q-bio.BM https://arxiv.org/abs/2511.06930 False False 2511.07024 A critical assessment of the role of topology on protein thermal stability 2025-11-10 q-bio.BM q-bio.BM https://arxiv.org/abs/2511.07024 False False 2511.07219 Integrating Epigenetic and Phenotypic Features for Biological Age Estimation in Cancer Patients via Multimodal Learning 2025-11-10 q-bio.GN q-bio.GN https://arxiv.org/abs/2511.07219 False False 2511.07264 edible polysaccharides as stabilizers and carriers for the delivery of phenolic compounds and pigments in food formulations 2025-11-10 q-bio.BM q-bio.BM https://arxiv.org/abs/2511.07264 False False 2511.07313 De-Individualizing fMRI Signals via Mahalanobis Whitening and Bures Geometry 2025-11-10 cs.LG;q-bio.NC;q-bio.QM q-bio.NC https://arxiv.org/abs/2511.07313 False False 2511.07344 Higher-Order Interactions in Brain Connectomics: Implicit versus Explicit Modeling Approaches 2025-11-10 q-bio.QM q-bio.QM https://arxiv.org/abs/2511.07344 False False 2511.07406 Entangled Schrödinger Bridge Matching 2025-11-10 cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2511.07406 False False 2511.07497 Biodose Tools updates for criticality accidents and interlaboratory comparisons 2025-11-10 q-bio.QM q-bio.QM https://arxiv.org/abs/2511.07497 False False 2511.07624 TrackStudio: An Integrated Toolkit for Markerless Tracking 2025-11-10 cs.CV;q-bio.QM q-bio.QM https://arxiv.org/abs/2511.07624 False False 2511.07390 A Diffusion Model to Shrink Proteins While Maintaining Their Function 2025-11-10 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2511.07390 False False 2511.07024 The role of topology on protein thermal stability 2025-11-10 q-bio.BM q-bio.BM https://arxiv.org/abs/2511.07024 False False 2511.07624 TrackStudio: An Integrated Toolkit for Markerless Tracking 2025-11-10 cs.CV;q-bio.QM q-bio.QM https://arxiv.org/abs/2511.07624 False False 2511.07624 TrackStudio: An Integrated Toolkit for Markerless Tracking 2025-11-10 cs.CV;q-bio.QM q-bio.QM https://arxiv.org/abs/2511.07624 False False 2511.06697 Emergent self-inhibition governs the landscape of stable states in complex ecosystems 2025-11-10 physics.dis-nn;physics.stat-mech;q-bio.PE q-bio.PE https://arxiv.org/abs/2511.06697 False False 2511.06697 Emergent self-inhibition governs the landscape of stable states in complex ecosystems 2025-11-10 physics.dis-nn;physics.stat-mech;q-bio.PE q-bio.PE https://arxiv.org/abs/2511.06697 False False 2511.06269 LLM$^3$-DTI: A Large Language Model and Multi-modal data co-powered framework for Drug-Target Interaction prediction 2025-11-09 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2511.06269 False False 2511.06426 Geometric and statistical analysis of avian skull morphology 2025-11-09 q-bio.QM q-bio.QM https://arxiv.org/abs/2511.06426 False False 2511.06509 A mathematical framework of consumer-resource dynamics: How to incorporate interactions between interactions in evolutionary process 2025-11-09 q-bio.PE q-bio.PE https://arxiv.org/abs/2511.06509 False False 2511.06519 On the Analogy between Human Brain and LLMs: Spotting Key Neurons in Grammar Perception 2025-11-09 cs.AI;cs.CL;q-bio.NC q-bio.NC https://arxiv.org/abs/2511.06519 False False 2511.06356 Reaction Prediction via Interaction Modeling of Symmetric Difference Shingle Sets 2025-11-09 cs.AI;cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2511.06356 False False 2511.06426 Robust Parametric Estimation of Avian Cranial Morphology 2025-11-09 q-bio.QM q-bio.QM https://arxiv.org/abs/2511.06426 False False 2511.06426 Robust Parametric Estimation of Avian Cranial Morphology 2025-11-09 q-bio.QM q-bio.QM https://arxiv.org/abs/2511.06426 False False 2511.06426 Robust Parametric Estimation of Avian Cranial Morphology 2025-11-09 q-bio.QM q-bio.QM https://arxiv.org/abs/2511.06426 False False 2511.06426 Robust Parametric Estimation of Avian Cranial Morphology 2025-11-09 q-bio.QM q-bio.QM https://arxiv.org/abs/2511.06426 False False 2511.05973 Explainable Deep Learning-based Classification of Wolff-Parkinson-White Electrocardiographic Signals 2025-11-08 cs.LG;cs.NA;math.NA;q-bio.TO q-bio.TO https://arxiv.org/abs/2511.05973 False False 2511.05992 Shared and distinct exonic parts in alternative paths of splicing bubbles 2025-11-08 q-bio.GN q-bio.GN https://arxiv.org/abs/2511.05992 False False 2511.06140 Non-invasive load measurement in the human tibia via spectral analysis of flexural waves 2025-11-08 q-bio.QM q-bio.QM https://arxiv.org/abs/2511.06140 False False 2511.06165 Spatial Selection and the Multiscale Dynamics of Urban Change 2025-11-08 econ.GN;physics.AO;physics.soc-ph;q-bio.PE;q-fin.EC q-bio.PE https://arxiv.org/abs/2511.06165 False False 2511.05906 Dynamics of menopause from deconvolution of millions of lab tests 2025-11-08 q-bio.QM;q-bio.TO q-bio.QM https://arxiv.org/abs/2511.05906 False False 2511.06153 Topologically Invariant Permutation Test 2025-11-08 math.AT;q-bio.NC;stat.ME q-bio.NC https://arxiv.org/abs/2511.06153 False False 2511.06140 Non-invasive load measurement in the human tibia via spectral analysis of flexural waves 2025-11-08 q-bio.QM q-bio.QM https://arxiv.org/abs/2511.06140 False False 2511.06140 Non-invasive load measurement in the human tibia via spectral analysis of flexural waves 2025-11-08 q-bio.QM q-bio.QM https://arxiv.org/abs/2511.06140 False False 2511.06140 Non-invasive load measurement in the human tibia via spectral analysis of flexural waves 2025-11-08 q-bio.QM q-bio.QM https://arxiv.org/abs/2511.06140 False False 2511.06140 Non-invasive load measurement in the human tibia via spectral analysis of flexural waves 2025-11-08 q-bio.QM q-bio.QM https://arxiv.org/abs/2511.06140 False False 2511.05906 Systemic physiological cliff at menopause revealed by temporal deconvolution of 300 million lab tests: a multi-cohort retrospective study 2025-11-08 q-bio.QM;q-bio.TO q-bio.QM https://arxiv.org/abs/2511.05906 False False 2511.05906 Systemic physiological cliff at menopause revealed by temporal deconvolution of 300 million lab tests: a multi-cohort retrospective study 2025-11-08 q-bio.QM;q-bio.TO q-bio.QM https://arxiv.org/abs/2511.05906 False False 2511.06140 Non-invasive load measurement in the human tibia via spectral analysis of flexural waves 2025-11-08 q-bio.QM q-bio.QM https://arxiv.org/abs/2511.06140 False False 2511.06140 Non-invasive load measurement in the human tibia via spectral analysis of flexural waves 2025-11-08 q-bio.QM q-bio.QM https://arxiv.org/abs/2511.06140 False False 2511.05992 Shared and distinct exonic parts in alternative paths of splicing bubbles 2025-11-08 q-bio.GN q-bio.GN https://arxiv.org/abs/2511.05992 False False 2511.05992 Shared and distinct exonic parts in alternative paths of splicing bubbles 2025-11-08 q-bio.GN q-bio.GN https://arxiv.org/abs/2511.05992 False False 2511.04887 Duration-modulated neural population dynamics in humans during BMI controls 2025-11-07 q-bio.NC q-bio.NC https://arxiv.org/abs/2511.04887 False False 2511.04892 LG-NuSegHop: A Local-to-Global Self-Supervised Pipeline For Nuclei Instance Segmentation 2025-11-07 cs.CV;eess.IV;q-bio.BM q-bio.BM https://arxiv.org/abs/2511.04892 False False 2511.04983 Predicting Cognitive Assessment Scores in Older Adults with Cognitive Impairment Using Wearable Sensors 2025-11-07 cs.LG;eess.SP;q-bio.NC q-bio.NC https://arxiv.org/abs/2511.04983 False False 2511.04998 BiPETE: A Bi-Positional Embedding Transformer Encoder for Risk Assessment of Alcohol and Substance Use Disorder with Electronic Health Records 2025-11-07 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2511.04998 False False 2511.05130 Modelling variability of the immunity build-up and waning following RNA-based vaccination 2025-11-07 q-bio.CB;q-bio.PE q-bio.CB https://arxiv.org/abs/2511.05130 False False 2511.05183 PySlyde: A Lightweight, Open-Source Toolkit for Pathology Preprocessing 2025-11-07 cs.CV;eess.IV;q-bio.QM q-bio.QM https://arxiv.org/abs/2511.05183 False False 2511.05232 Travelling waves modulated by subthreshold oscillations in networks of integrate-and-fire neurons 2025-11-07 q-bio.NC q-bio.NC https://arxiv.org/abs/2511.05232 False False 2511.05630 BrainCSD: A Hierarchical Consistency-Driven MoE Foundation Model for Unified Connectome Synthesis and Multitask Brain Trait Prediction 2025-11-07 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2511.05630 False False 2511.05634 Long-bone microanatomy in elephants: microstructural insights into gigantic beasts 2025-11-07 physics.bio-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2511.05634 False False 2511.05688 An epidemiological model with waning immunity and reinfection 2025-11-07 q-bio.PE q-bio.PE https://arxiv.org/abs/2511.05688 False False 2511.05708 HuBMAP Data Portal: A Resource for Multi-Modal Spatial and Single-Cell Data of Healthy Human Tissues 2025-11-07 q-bio.QM q-bio.QM https://arxiv.org/abs/2511.05708 False False 2511.05726 GastroDL-Fusion: A Dual-Modal Deep Learning Framework Integrating Protein-Ligand Complexes and Gene Sequences for Gastrointestinal Disease Drug Discovery 2025-11-07 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2511.05726 False False 2511.05221 ActiTect: A Generalizable Machine Learning Pipeline for REM Sleep Behavior Disorder Screening through Standardized Actigraphy 2025-11-07 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2511.05221 False False 2511.05688 An epidemiological model with waning immunity and reinfection 2025-11-07 q-bio.PE q-bio.PE https://arxiv.org/abs/2511.05688 False False 2511.05221 ActiTect: A Generalizable Machine Learning Pipeline for REM Sleep Behavior Disorder Screening through Standardized Actigraphy 2025-11-07 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2511.05221 False False 2511.05221 ActiTect: A Generalizable Machine Learning Pipeline for REM Sleep Behavior Disorder Screening through Standardized Actigraphy 2025-11-07 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2511.05221 False False 2511.05708 HuBMAP Data Portal: A Resource for Multimodal Spatial and Single-Cell Data of Healthy Human Tissues 2025-11-07 q-bio.QM q-bio.QM https://arxiv.org/abs/2511.05708 False False 2511.05708 HuBMAP Data Portal: A Resource for Multimodal Spatial and Single-Cell Data of Healthy Human Tissues 2025-11-07 q-bio.QM q-bio.QM https://arxiv.org/abs/2511.05708 False False 2511.03976 PETRA: Pretrained Evolutionary Transformer for SARS-CoV-2 Mutation Prediction 2025-11-06 cs.AI;cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2511.03976 False False 2511.03986 Use of Continuous Glucose Monitoring with Machine Learning to Identify Metabolic Subphenotypes and Inform Precision Lifestyle Changes 2025-11-06 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2511.03986 False False 2511.04040 Enhancing Multimodal Protein Function Prediction Through Dual-Branch Dynamic Selection with Reconstructive Pre-Training 2025-11-06 cs.LG;cs.NE;q-bio.BM q-bio.BM https://arxiv.org/abs/2511.04040 False False 2511.04097 Habitat fragmentation promotes spatial scale separation under resource competition 2025-11-06 physics.AO;physics.soc-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2511.04097 False False 2511.04174 Protein aggregation in Huntington's disease 2025-11-06 q-bio.BM;q-bio.NC q-bio.BM https://arxiv.org/abs/2511.04174 False False 2511.04276 Vector Traits Shape Disease Persistence: A Predator Prey Approach to Dengue 2025-11-06 math.DS;q-bio.PE q-bio.PE https://arxiv.org/abs/2511.04276 False False 2511.04292 BTTDA: Block-Term Tensor Discriminant Analysis for Brain-Computer Interfacing 2025-11-06 eess.SP;q-bio.NC q-bio.NC https://arxiv.org/abs/2511.04292 False False 2511.04327 Feasibility and Single Parameter Scaling of Extinctions in Multispecies Lotka-Volterra Ecosystems 2025-11-06 physics.AO;physics.bio-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2511.04327 False False 2511.04454 Fitting Reinforcement Learning Model to Behavioral Data under Bandits 2025-11-06 cs.CE;cs.LG;math.OC;q-bio.NC q-bio.NC https://arxiv.org/abs/2511.04454 False False 2511.04455 The brain as a blueprint: a survey of brain-inspired approaches to learning in artificial intelligence 2025-11-06 q-bio.NC q-bio.NC https://arxiv.org/abs/2511.04455 False False 2511.04458 TRAECR: A Tool for Preprocessing Positron Emission Tomography Imaging for Statistical Modeling 2025-11-06 q-bio.TO;stat.AP q-bio.TO https://arxiv.org/abs/2511.04458 False False 2511.04539 Unified Generative Latent Representation for Functional Brain Graphs 2025-11-06 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2511.04539 False False 2511.04574 Reproduction Numbers R_0, R_t for COVID-19 Infections with Gaussian Distribution of Generation Times, and of Serial Intervals including Presymptomatic Transmission 2025-11-06 q-bio.PE q-bio.PE https://arxiv.org/abs/2511.04574 False False 2511.04593 Neural Computation Without Slots: Steps Towards Biologically Plausible Memory and Attention in Natural and Artificial Intelligence 2025-11-06 cs.NE;q-bio.NC q-bio.NC https://arxiv.org/abs/2511.04593 False False 2511.04726 Stresses and fluid flow in lamina cribrosa through anisotropic poroelasticty 2025-11-06 physics.app-ph;physics.flu-dyn;physics.mtrl-sci;q-bio.TO q-bio.TO https://arxiv.org/abs/2511.04726 False False 2511.04814 A Standardized Benchmark for Multilabel Antimicrobial Peptide Classification 2025-11-06 cs.AI;cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2511.04814 False False 2511.04825 Persistent reachability homology in machine learning applications 2025-11-06 cs.LG;math.AT;q-bio.QM q-bio.QM https://arxiv.org/abs/2511.04825 False False 2511.04838 SPECTRA: Spectral Target-Aware Graph Augmentation for Imbalanced Molecular Property Regression 2025-11-06 cs.LG;math.SP;q-bio.MN q-bio.MN https://arxiv.org/abs/2511.04838 False False 2511.04854 SigmaDock: Untwisting Molecular Docking With Fragment-Based SE(3) Diffusion 2025-11-06 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2511.04854 False False 2511.05612 AI-Enhanced High-Density NIRS Patch for Real-Time Brain Layer Oxygenation Monitoring in Neurological Emergencies 2025-11-06 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2511.05612 False False 2511.04143 Infrared Microscopy of Biochemistry and Metabolism in Single Living Eukaryotic Cells 2025-11-06 q-bio.QM q-bio.QM https://arxiv.org/abs/2511.04143 False False 2511.04637 Advancing Risk Gene Discovery Across the Allele Frequency Spectrum 2025-11-06 q-bio.GN q-bio.GN https://arxiv.org/abs/2511.04637 False False 2511.05606 Exploring Cordial Labeling techniques in Brain Connectivity Network 2025-11-06 q-bio.NC q-bio.NC https://arxiv.org/abs/2511.05606 False False 2511.04802 Shaping manifolds in equivariant recurrent neural networks 2025-11-06 q-bio.NC q-bio.NC https://arxiv.org/abs/2511.04802 False False 2511.14781 Quantifying the Role of OpenFold Components in Protein Structure Prediction 2025-11-06 cs.AI;q-bio.BM q-bio.BM https://arxiv.org/abs/2511.14781 False False 2511.04047 Why Consciousness Should Explain Physical Phenomena: Toward a Testable Theory 2025-11-06 cs.NE;q-bio.NC q-bio.NC https://arxiv.org/abs/2511.04047 False False 2511.04417 The selective advantage of neighborhood-aware mutants in Moran process 2025-11-06 q-bio.PE q-bio.PE https://arxiv.org/abs/2511.04417 False False 2511.03988 Simple 3D Pose Features Support Human and Machine Social Scene Understanding 2025-11-06 cs.CV;q-bio.NC q-bio.NC https://arxiv.org/abs/2511.03988 False False 2511.04854 SigmaDock: Untwisting Molecular Docking With Fragment-Based SE(3) Diffusion 2025-11-06 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2511.04854 False False 2511.04454 Fitting Reinforcement Learning Model to Behavioral Data under Bandits 2025-11-06 cs.CE;cs.LG;math.OC;q-bio.NC q-bio.NC https://arxiv.org/abs/2511.04454 False False 2511.04047 Considering a generative mechanism of consciousness from the perspective of inter-level causation 2025-11-06 cs.NE;q-bio.NC q-bio.NC https://arxiv.org/abs/2511.04047 False False 2511.04047 Considering a generative mechanism of consciousness from the perspective of inter-level causation 2025-11-06 cs.NE;q-bio.NC q-bio.NC https://arxiv.org/abs/2511.04047 False False 2511.04047 Considering a generative mechanism of consciousness from the perspective of inter-level causation 2025-11-06 cs.NE;q-bio.NC q-bio.NC https://arxiv.org/abs/2511.04047 False False 2511.04047 Considering a generative mechanism of consciousness from the perspective of inter-level causation 2025-11-06 cs.NE;q-bio.NC q-bio.NC https://arxiv.org/abs/2511.04047 False False 2511.04327 Feasibility and Single Parameter Scaling of Extinctions in Large Ecological Communities 2025-11-06 physics.AO;physics.bio-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2511.04327 False False 2511.04327 Feasibility and Single Parameter Scaling of Extinctions in Large Ecological Communities 2025-11-06 physics.AO;physics.bio-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2511.04327 False False 2511.04838 SPECTRA: Spectral Domain-Aware Graph Generation for Imbalanced Molecular Property Regression 2025-11-06 cs.LG;math.SP;q-bio.MN q-bio.MN https://arxiv.org/abs/2511.04838 False False 2511.04838 SPECTRA: Spectral Domain-Aware Graph Generation for Imbalanced Molecular Property Regression 2025-11-06 cs.LG;math.SP;q-bio.MN q-bio.MN https://arxiv.org/abs/2511.04838 False False 2511.04047 Considering a generative mechanism of consciousness from the perspective of inter-level causation 2025-11-06 cs.NE;q-bio.NC q-bio.NC https://arxiv.org/abs/2511.04047 False False 2511.04047 Considering a generative mechanism of consciousness from the perspective of inter-level causation 2025-11-06 cs.NE;q-bio.NC q-bio.NC https://arxiv.org/abs/2511.04047 False False 2511.04726 Stresses and fluid flow in lamina cribrosa through anisotropic poroelasticty 2025-11-06 physics.app-ph;physics.flu-dyn;physics.mtrl-sci;q-bio.TO q-bio.TO https://arxiv.org/abs/2511.04726 False False 2511.04327 Feasibility and Single Parameter Scaling of Extinctions in Large Ecological Communities 2025-11-06 physics.AO;physics.bio-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2511.04327 False False 2511.04417 The evolutionary advantage of replacers in the Moran process 2025-11-06 q-bio.PE q-bio.PE https://arxiv.org/abs/2511.04417 False False 2511.04417 The evolutionary advantage of replacers in the Moran process 2025-11-06 q-bio.PE q-bio.PE https://arxiv.org/abs/2511.04417 False False 2511.04047 Avoiding Epiphenomenalism in Theories of Consciousness: A Causal Framework Based on Asymmetry 2025-11-06 cs.NE;q-bio.NC q-bio.NC https://arxiv.org/abs/2511.04047 False False 2511.04047 Avoiding Epiphenomenalism in Theories of Consciousness: A Causal Framework Based on Asymmetry 2025-11-06 cs.NE;q-bio.NC q-bio.NC https://arxiv.org/abs/2511.04047 False False 2511.04047 Avoiding Epiphenomenalism in Theories of Consciousness: A Causal Framework Based on Asymmetry 2025-11-06 cs.NE;q-bio.NC q-bio.NC https://arxiv.org/abs/2511.04047 False False 2511.04047 Avoiding Epiphenomenalism in Theories of Consciousness: A Causal Framework Based on Asymmetry 2025-11-06 cs.NE;q-bio.NC q-bio.NC https://arxiv.org/abs/2511.04047 False False 2511.04637 Advancing Risk Gene Discovery Across the Allele Frequency Spectrum 2025-11-06 q-bio.GN q-bio.GN https://arxiv.org/abs/2511.04637 False False 2511.04637 Advancing Risk Gene Discovery Across the Allele Frequency Spectrum 2025-11-06 q-bio.GN q-bio.GN https://arxiv.org/abs/2511.04637 False False 2511.04458 TRAECR: A Tool for Preprocessing Positron Emission Tomography Imaging for Statistical Modeling 2025-11-06 q-bio.TO;stat.AP q-bio.TO https://arxiv.org/abs/2511.04458 False False 2511.04458 TRAECR: A Tool for Preprocessing Positron Emission Tomography Imaging for Statistical Modeling 2025-11-06 q-bio.TO;stat.AP q-bio.TO https://arxiv.org/abs/2511.04458 False False 2511.04539 Geometry-Guided Generative Representation for Functional Brain Graphs 2025-11-06 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2511.04539 False False 2511.04539 Geometry-Guided Generative Representation for Functional Brain Graphs 2025-11-06 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2511.04539 False False 2511.04327 Feasibility and Single Parameter Scaling of Extinctions in Large Ecological Communities 2025-11-06 physics.AO;physics.bio-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2511.04327 False False 2511.04327 Feasibility and Single Parameter Scaling of Extinctions in Large Ecological Communities 2025-11-06 physics.AO;physics.bio-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2511.04327 False False 2511.03096 Novel reaction-diffusion PDE model for fingerprint-like pattern emergence via the Schnakenberg mechanism 2025-11-05 physics.PS;q-bio.QM q-bio.QM https://arxiv.org/abs/2511.03096 False False 2511.03113 FP-AbDiff: Improving Score-based Antibody Design by Capturing Nonequilibrium Dynamics through the Underlying Fokker-Planck Equation 2025-11-05 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2511.03113 False False 2511.03242 Topography, climate, land cover, and biodiversity: Explaining endemic richness and management implications on a Mediterranean island 2025-11-05 cs.LG;q-bio.PE;stat.OT q-bio.PE https://arxiv.org/abs/2511.03242 False False 2511.03263 FAPEX: Fractional Amplitude-Phase Expressor for Robust Cross-Subject Seizure Prediction 2025-11-05 eess.SP;q-bio.NC q-bio.NC https://arxiv.org/abs/2511.03263 False False 2511.03365 Morpho-Genomic Deep Learning for Ovarian Cancer Subtype and Gene Mutation Prediction from Histopathology 2025-11-05 cs.CV;eess.IV;q-bio.QM q-bio.QM https://arxiv.org/abs/2511.03365 False False 2511.03376 Computational Imaging Meets LLMs: Zero-Shot IDH Mutation Prediction in Brain Gliomas 2025-11-05 cs.AI;eess.IV;q-bio.QM q-bio.QM https://arxiv.org/abs/2511.03376 False False 2511.03483 A Gene Ranking Framework Enhances the Design Efficiency of Genome-Scale Constraint-Based Metabolic Networks 2025-11-05 q-bio.MN q-bio.MN https://arxiv.org/abs/2511.03483 False False 2511.03502 Emergent tuning heterogeneity in cortical circuits is sensitive to cellular neuronal dynamics 2025-11-05 physics.bio-ph;q-bio.NC q-bio.NC https://arxiv.org/abs/2511.03502 False False 2511.03503 Beta frequency shifts in decision making: Spectral fingerprints or communication channels? 2025-11-05 q-bio.NC q-bio.NC https://arxiv.org/abs/2511.03503 False False 2511.03671 Final state sensitivity and fractal basin boundaries from coupled Chialvo neurons 2025-11-05 math.DS;physics.CD;physics.bio-ph;q-bio.NC q-bio.NC https://arxiv.org/abs/2511.03671 False False 2511.03677 Impact of Resistance Development Mechanisms on Antibiotic Treatment Outcomes 2025-11-05 math.DS;q-bio.PE q-bio.PE https://arxiv.org/abs/2511.03677 False False 2511.03692 Improving Gene Trees without more data 2025-11-05 cs.CE;q-bio.PE q-bio.PE https://arxiv.org/abs/2511.03692 False False 2511.03767 Phenotype discovery of traumatic brain injury segmentations from heterogeneous multi-site data 2025-11-05 eess.IV;q-bio.QM q-bio.QM https://arxiv.org/abs/2511.03767 False False 2511.03771 Climbing the label tree: Hierarchy-preserving contrastive learning for medical imaging 2025-11-05 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2511.03771 False False 2511.03819 SILVI: Simple Interface for Labeling Video Interactions 2025-11-05 cs.CV;q-bio.QM q-bio.QM https://arxiv.org/abs/2511.03819 False False 2511.03856 Diffusion Dynamics in Biofilms with Time-Varying Channels 2025-11-05 cs.IT;math.IT;physics.bio-ph;q-bio.CB q-bio.CB https://arxiv.org/abs/2511.03856 False False 2511.03873 CAR T Cells from Code to Clinic: Framing Modeling Approaches with Current Translational Research Goals 2025-11-05 q-bio.CB q-bio.CB https://arxiv.org/abs/2511.03873 False False 2511.03897 Simulating the impact of perception bias on social contact surveys for infectious disease modelling 2025-11-05 q-bio.PE q-bio.PE https://arxiv.org/abs/2511.03897 False False 2511.05580 Approximating the Mathematical Structure of Psychodynamics 2025-11-05 cs.CL;cs.CY;cs.HC;q-bio.NC q-bio.NC https://arxiv.org/abs/2511.05580 False False 2511.05587 Unsupervised whole-heart function assessment 2025-11-05 q-bio.TO q-bio.TO https://arxiv.org/abs/2511.05587 False False 2511.03643 Explaining Human Choice Probabilities with Simple Vector Representations 2025-11-05 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2511.03643 False False 2511.13733 THD-BAR: Topology Hierarchical Derived Brain Autoregressive Modeling for EEG Generic Representations 2025-11-05 cs.LG;eess.SP;q-bio.NC q-bio.NC https://arxiv.org/abs/2511.13733 False False 2511.03826 CORE -- A Cell-Level Coarse-to-Fine Image Registration Engine for Multi-stain Image Alignment 2025-11-05 cs.AI;q-bio.QM q-bio.QM https://arxiv.org/abs/2511.03826 False False 2511.03346 Life as a Categorical Information-Handling System: An Evolutionary Information-Theoretic Model of the Holobiont 2025-11-05 q-bio.PE q-bio.PE https://arxiv.org/abs/2511.03346 False False 2511.03849 Which Similarity-Sensitive Entropy (S-entropy)? 2025-11-05 cs.IT;cs.LG;math.IT;q-bio.PE q-bio.PE https://arxiv.org/abs/2511.03849 False False 2511.03849 Which Similarity-Sensitive Entropy (Sentropy)? 2025-11-05 cs.IT;cs.LG;math.IT;q-bio.PE q-bio.PE https://arxiv.org/abs/2511.03849 False False 2511.03819 SiLVi: Simple Interface for Labeling Video Interactions 2025-11-05 cs.CV;q-bio.QM q-bio.QM https://arxiv.org/abs/2511.03819 False False 2511.03819 SiLVi: Simple Interface for Labeling Video Interactions 2025-11-05 cs.CV;q-bio.QM q-bio.QM https://arxiv.org/abs/2511.03819 False False 2511.03767 Phenotype discovery of traumatic brain injury segmentations from heterogeneous multi-site data 2025-11-05 eess.IV;q-bio.QM q-bio.QM https://arxiv.org/abs/2511.03767 False False 2511.03767 Phenotype discovery of traumatic brain injury segmentations from heterogeneous multi-site data 2025-11-05 eess.IV;q-bio.QM q-bio.QM https://arxiv.org/abs/2511.03767 False False 2511.03483 A Gene Ranking Framework Enhances the Design Efficiency of Genome-Scale Constraint-Based Metabolic Networks under Time Limits 2025-11-05 q-bio.MN q-bio.MN https://arxiv.org/abs/2511.03483 False False 2511.03483 A Gene Ranking Framework Enhances the Design Efficiency of Genome-Scale Constraint-Based Metabolic Networks under Time Limits 2025-11-05 q-bio.MN q-bio.MN https://arxiv.org/abs/2511.03483 False False 2511.03643 Explaining Human Choice Probabilities with Simple Vector Representations 2025-11-05 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2511.03643 False False 2511.03643 Explaining Human Choice Probabilities with Simple Vector Representations 2025-11-05 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2511.03643 False False 2511.03826 CORE -- A Cell-Level Coarse-to-Fine Image Registration Engine for Multi-stain Image Alignment 2025-11-05 cs.AI;q-bio.QM q-bio.QM https://arxiv.org/abs/2511.03826 False False 2511.03826 CORE -- A Cell-Level Coarse-to-Fine Image Registration Engine for Multi-stain Image Alignment 2025-11-05 cs.AI;q-bio.QM q-bio.QM https://arxiv.org/abs/2511.03826 False False 2511.02332 Biological Regulatory Network Inference through Circular Causal Structure Learning 2025-11-04 cs.AI;q-bio.MN q-bio.MN https://arxiv.org/abs/2511.02332 False False 2511.02418 Biomolecular LQR under Partial Observation 2025-11-04 math.OC;q-bio.MN q-bio.MN https://arxiv.org/abs/2511.02418 False False 2511.02437 Asymptotic behavior for a general class of spreading models 2025-11-04 math.DS;q-bio.PE q-bio.PE https://arxiv.org/abs/2511.02437 False False 2511.02622 Machine Learning for RNA Secondary Structure Prediction: a review of current methods and challenges 2025-11-04 physics.bio-ph;physics.comp-ph;q-bio.BM q-bio.BM https://arxiv.org/abs/2511.02622 False False 2511.02735 Spatial Insight: How Data-Driven Regions of Interest Selection Enhances Single-Trial P300 Classification in EEG-Based BCIs 2025-11-04 q-bio.QM q-bio.QM https://arxiv.org/abs/2511.02735 False False 2511.02769 STAR-VAE: Latent Variable Transformers for Scalable and Controllable Molecular Generation 2025-11-04 cs.AI;cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2511.02769 False False 2511.02882 Asymptotic analysis of a stochastic SVEIS epidemic model using Black-Karasinski process 2025-11-04 math.PR;q-bio.PE q-bio.PE https://arxiv.org/abs/2511.02882 False False 2511.02888 NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction 2025-11-04 cs.AI;q-bio.GN q-bio.GN https://arxiv.org/abs/2511.02888 False False 2511.02986 Scalable Single-Cell Gene Expression Generation with Latent Diffusion Models 2025-11-04 cs.LG;q-bio.GN;stat.ML q-bio.GN https://arxiv.org/abs/2511.02986 False False 2511.02722 Association-sensory spatiotemporal hierarchy and functional gradient-regularised recurrent neural network with implications for schizophrenia 2025-11-04 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2511.02722 False False 2511.03751 Attention-based ROI Discovery in 3D Tissue Images 2025-11-04 q-bio.QM q-bio.QM https://arxiv.org/abs/2511.03751 False False 2511.02932 Phospho-Proteomics Method Optimization and Application to Stimulated Jurkat Cells 2025-11-04 q-bio.GN;q-bio.QM q-bio.GN https://arxiv.org/abs/2511.02932 False False 2511.02558 Forecasting Future Anatomies: Longitudinal Brain Mri-to-Mri Prediction 2025-11-04 cs.CV;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2511.02558 False False 2511.02766 Microbes in the Moonlight: How the Gut Microbiota Influences Sleep 2025-11-04 q-bio.NC q-bio.NC https://arxiv.org/abs/2511.02766 False False 2511.02241 Structural Plasticity as Active Inference: A Biologically-Inspired Architecture for Homeostatic Control 2025-11-04 cs.AI;cs.LG;cs.NE;q-bio.NC q-bio.NC https://arxiv.org/abs/2511.02241 False False 2511.03073 Evolution under Stochastic Transmission: Mutation-Rate Modifiers 2025-11-04 q-bio.PE q-bio.PE https://arxiv.org/abs/2511.03073 False False 2511.02263 LA-MARRVEL: A Knowledge-Grounded, Language-Aware LLM Framework for Clinically Robust Rare Disease Gene Prioritization 2025-11-04 cs.AI;q-bio.GN q-bio.GN https://arxiv.org/abs/2511.02263 False False 2511.02622 Machine Learning for RNA Secondary Structure Prediction: a review of current methods and challenges 2025-11-04 physics.bio-ph;physics.comp-ph;q-bio.BM q-bio.BM https://arxiv.org/abs/2511.02622 False False 2511.02622 Machine Learning for RNA Secondary Structure Prediction: a review of current methods and challenges 2025-11-04 physics.bio-ph;physics.comp-ph;q-bio.BM q-bio.BM https://arxiv.org/abs/2511.02622 False False 2511.02558 Forecasting Future Anatomies: Longitudinal Brain Mri-to-Mri Prediction 2025-11-04 cs.CV;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2511.02558 False False 2511.02558 Forecasting Future Anatomies: Longitudinal Brain Mri-to-Mri Prediction 2025-11-04 cs.CV;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2511.02558 False False 2511.02986 Scalable Single-Cell Gene Expression Generation with Latent Diffusion Models 2025-11-04 cs.LG;q-bio.GN;stat.ML q-bio.GN https://arxiv.org/abs/2511.02986 False False 2511.01122 The Future Orchid Diversity of Great Britain and Ireland using an SDM Approach 2025-11-03 q-bio.PE q-bio.PE https://arxiv.org/abs/2511.01122 False False 2511.01171 STELLAR-koff: A Transfer Learning Model for Protein-Ligand Dissociation Rate Constant Prediction Based on Interaction Landscape 2025-11-03 q-bio.QM q-bio.QM https://arxiv.org/abs/2511.01171 False False 2511.01277 Identification of Capture Phases in Nanopore Protein Sequencing Data Using a Deep Learning Model 2025-11-03 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2511.01277 False False 2511.01555 Fast, memory-efficient genomic interval tokenizers for modern machine learning 2025-11-03 cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2511.01555 False False 2511.01784 Variational Representational Similarity Analysis (vRSA) for M/EEG 2025-11-03 q-bio.NC q-bio.NC https://arxiv.org/abs/2511.01784 False False 2511.01834 Temperature reshapes epigenomic diversity in Arabidopsis thaliana -- JSD and Methylator reveal RdDM-CMT2 plasticity 2025-11-03 q-bio.GN q-bio.GN https://arxiv.org/abs/2511.01834 False False 2511.01943 From the RNA world to land plants: Evolutionary insights from tRNA genes 2025-11-03 q-bio.PE q-bio.PE https://arxiv.org/abs/2511.01943 False False 2511.02038 Predicting Microbial Interactions Using Graph Neural Networks 2025-11-03 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2511.02038 False False 2511.02063 Neural dynamics of cognitive control: Current tensions and future promise 2025-11-03 q-bio.NC q-bio.NC https://arxiv.org/abs/2511.02063 False False 2511.02088 In silico trials of acute ischemic stroke: predicting the total potential for improvement to patient functional outcomes 2025-11-03 q-bio.TO q-bio.TO https://arxiv.org/abs/2511.02088 False False 2511.02128 DL4Proteins Jupyter Notebooks Teach how to use Artificial Intelligence for Biomolecular Structure Prediction and Design 2025-11-03 q-bio.BM q-bio.BM https://arxiv.org/abs/2511.02128 False False 2511.01953 Reliability Assessment Framework Based on Feature Separability for Pathological Cell Image Classification under Prior Bias 2025-11-03 eess.IV;q-bio.QM q-bio.QM https://arxiv.org/abs/2511.01953 False False 2511.11609 A Stochastic Quantum Neural Network Model for Ai 2025-11-03 math.QA;physics.quant-ph;q-bio.NC q-bio.NC https://arxiv.org/abs/2511.11609 False False 2511.01732 Geometric Modeling of Hippocampal Tau Deposition: A Surface-Based Framework for Covariate Analysis and Off-Target Contamination Detection 2025-11-03 q-bio.QM;stat.AP;stat.OT q-bio.QM https://arxiv.org/abs/2511.01732 False False 2511.01943 Multilevel genomic constraints shape nuclear tRNA gene organization in plants 2025-11-03 q-bio.PE q-bio.PE https://arxiv.org/abs/2511.01943 False False 2511.01943 Multilevel genomic constraints shape nuclear tRNA gene organization in plants 2025-11-03 q-bio.PE q-bio.PE https://arxiv.org/abs/2511.01943 False False 2511.00745 High-Power Dual-Channel Field Chamber for High-Frequency Magnetic Neuromodulation 2025-11-02 cs.SY;eess.SY;physics.med-ph;q-bio.NC q-bio.NC https://arxiv.org/abs/2511.00745 False False 2511.00951 Design, Assessment, and Application of Machine Learning Potential Energy Surfaces 2025-11-02 physics.chem-ph;physics.comp-ph;q-bio.BM q-bio.BM https://arxiv.org/abs/2511.00951 False False 2511.00775 Detecting active Lévy particles using differential dynamic microscopy 2025-11-02 physics.soft;q-bio.QM q-bio.QM https://arxiv.org/abs/2511.00775 False False 2511.05548 Modeling Causal Interactions Across Brain Functional Subnetworks for Population-specific Disease Analysis 2025-11-02 q-bio.NC;stat.AP q-bio.NC https://arxiv.org/abs/2511.05548 False False 2511.00977 Modeling Microenvironment Trajectories on Spatial Transcriptomics with NicheFlow 2025-11-02 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2511.00977 False False 2511.01939 "Epidemic ""momentum"" and a conservation law for infectious disease dynamics" 2025-11-02 q-bio.PE q-bio.PE https://arxiv.org/abs/2511.01939 False False 2511.00775 Detecting active Lévy particles using differential dynamic microscopy 2025-11-02 physics.soft;q-bio.QM q-bio.QM https://arxiv.org/abs/2511.00775 False False 2511.00775 Detecting active Lévy particles using differential dynamic microscopy 2025-11-02 physics.soft;q-bio.QM q-bio.QM https://arxiv.org/abs/2511.00775 False False 2511.01939 "Epidemic ""momentum"" and a conservation law for infectious disease dynamics" 2025-11-02 q-bio.PE q-bio.PE https://arxiv.org/abs/2511.01939 False False 2511.01939 "Epidemic ""momentum"" and a conservation law for infectious disease dynamics" 2025-11-02 q-bio.PE q-bio.PE https://arxiv.org/abs/2511.01939 False False 2511.00326 Thermal Stress Disrupts Symbiotic Fluid Dynamics in Bobtail Squid 2025-11-01 physics.bio-ph;q-bio.QM q-bio.QM https://arxiv.org/abs/2511.00326 False False 2511.00579 Sparse and nonparametric estimation of equations governing dynamical systems with applications to biology 2025-11-01 cs.LG;q-bio.QM;stat.ML q-bio.QM https://arxiv.org/abs/2511.00579 False False 2511.00507 Mathematical modeling of tumor-immune interactions: methods, applications, and future perspectives 2025-11-01 q-bio.QM q-bio.QM https://arxiv.org/abs/2511.00507 False False 2511.01920 Stochastic Models and Estimation of Undetected Infections in the Transmission of Zika Virus 2025-11-01 math.PR;q-bio.PE q-bio.PE https://arxiv.org/abs/2511.01920 False False 2510.27212 The Demon Hidden Behind Life's Ultra-Energy-Efficient Information Processing -- Demonstrated by Biological Molecular Motors 2025-10-31 cs.IT;math.IT;physics.bio-ph;physics.stat-mech;q-bio.BM q-bio.BM https://arxiv.org/abs/2510.27212 False False 2510.27268 Information geometry of perturbed gradient flow systems on hypergraphs: A perspective towards nonequilibrium physics 2025-10-31 math.DG;math.DS;physics.chem-ph;physics.stat-mech;q-bio.MN q-bio.MN https://arxiv.org/abs/2510.27268 False False 2510.27354 Streptococcosis in aquaculture: Advances, challenges, and future directions in disease control and prevention 2025-10-31 q-bio.PE q-bio.PE https://arxiv.org/abs/2510.27354 False False 2510.27366 A Sensing Whole Brain Zebrafish Foundation Model for Neuron Dynamics and Behavior 2025-10-31 q-bio.NC q-bio.NC https://arxiv.org/abs/2510.27366 False False 2510.27539 The transitional kinetics between open and closed Rep structures can be tuned by salt via two intermediate states 2025-10-31 q-bio.BM q-bio.BM https://arxiv.org/abs/2510.27539 False False 2510.27600 Effects of Model Reduction on Coherence and Information Transfer in Stochastic Biochemical Systems 2025-10-31 q-bio.MN q-bio.MN https://arxiv.org/abs/2510.27600 False False 2511.00119 GeneFlow: Translation of Single-cell Gene Expression to Histopathological Images via Rectified Flow 2025-10-31 cs.CV;q-bio.QM q-bio.QM https://arxiv.org/abs/2511.00119 False False 2511.00138 Incentives for self-isolation based on incidence rather than prevalence could help to flatten the curve: a modelling study 2025-10-31 physics.soc-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2511.00138 False False 2511.00170 AmpliconHunter2: a SIMD-Accelerated In-Silico PCR Engine 2025-10-31 q-bio.GN q-bio.GN https://arxiv.org/abs/2511.00170 False False 2510.27074 How Do Proteins Fold? 2025-10-31 physics.mes-hall;physics.soft;q-bio.BM q-bio.BM https://arxiv.org/abs/2510.27074 0.7371 0.7911 True 5 5.75 False 2511.00278 SCUDDO: An unsupervised clustering algorithm for single-cell Hi-C maps using diagonal diffusion operators 2025-10-31 q-bio.GN q-bio.GN https://arxiv.org/abs/2511.00278 False False 2511.01905 The impact of nonheritable variation in division rates on population growth across environments 2025-10-31 q-bio.PE q-bio.PE https://arxiv.org/abs/2511.01905 False False 2511.05542 ConnectomeBench: Can LLMs Proofread the Connectome? 2025-10-31 cs.AI;cs.CV;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2511.05542 False False 2511.00209 Diffusion Models at the Drug Discovery Frontier: A Review on Generating Small Molecules versus Therapeutic Peptides 2025-10-31 cs.AI;cs.LG;q-bio.BM;q-bio.QM q-bio.BM https://arxiv.org/abs/2511.00209 False False 2510.27097 Hierarchical Bayesian Model for Gene Deconvolution and Functional Analysis in Human Endometrium Across the Menstrual Cycle 2025-10-31 cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2510.27097 False False 2511.05546 Evolutionary Dynamics of Acid Resistance in Tumors: A Mathematical Model 2025-10-31 q-bio.TO q-bio.TO https://arxiv.org/abs/2511.05546 False False 2511.00278 SCUDDO: An unsupervised clustering algorithm for single-cell Hi-C maps using diagonal diffusion operators 2025-10-31 q-bio.GN q-bio.GN https://arxiv.org/abs/2511.00278 False False 2511.00278 SCUDDO: An unsupervised clustering algorithm for single-cell Hi-C maps using diagonal diffusion operators 2025-10-31 q-bio.GN q-bio.GN https://arxiv.org/abs/2511.00278 False False 2511.01905 The impact of nonheritable variation in division rates on population growth across environments 2025-10-31 q-bio.PE q-bio.PE https://arxiv.org/abs/2511.01905 False False 2511.01905 The impact of nonheritable variation in division rates on population growth across environments 2025-10-31 q-bio.PE q-bio.PE https://arxiv.org/abs/2511.01905 False False 2510.26357 Capillarity Reveals the Role of Capsid Geometry in HIV Nuclear Translocation 2025-10-30 physics.bio-ph;physics.soft;q-bio.SC q-bio.SC https://arxiv.org/abs/2510.26357 False False 2510.26556 On the number of non-degenerate canalizing Boolean functions 2025-10-30 cs.DM;math.CO;q-bio.MN q-bio.MN https://arxiv.org/abs/2510.26556 False False 2510.26728 Modelling ion channels with a view towards identifiability 2025-10-30 q-bio.BM q-bio.BM https://arxiv.org/abs/2510.26728 False False 2510.26949 Protein-protein interaction networks can be highly sensitive to the membrane phase transition 2025-10-30 physics.bio-ph;physics.stat-mech;q-bio.SC q-bio.SC https://arxiv.org/abs/2510.26949 False False 2510.26950 Ferrohydrodynamic Microfluidics for Bioparticle Separation and Single-Cell Phenotyping: Principles, Applications, and Emerging Directions 2025-10-30 cs.SY;eess.SY;q-bio.QM q-bio.QM https://arxiv.org/abs/2510.26950 False False 2510.26955 Neurons as Detectors of Coherent Sets in Sensory Dynamics 2025-10-30 q-bio.NC q-bio.NC https://arxiv.org/abs/2510.26955 False False 2510.27006 Generalized Maximum Entropy: When and Why you need it 2025-10-30 physics.data-an;q-bio.PE;stat.ME q-bio.PE https://arxiv.org/abs/2510.27006 False False 2510.26115 Quenched coalescent for diploid population models with selfing and overlapping generations 2025-10-30 math.PR;q-bio.PE q-bio.PE https://arxiv.org/abs/2510.26115 False False 2510.26685 Quantifying AI-to-Clinical Translation: The Algorithm-to-Outcome Concordance (AOC) Framework 2025-10-30 q-bio.QM q-bio.QM https://arxiv.org/abs/2510.26685 False False 2510.27030 Generalizing matrix representations to fully heterochronous ranked tree shapes 2025-10-30 math.CO;q-bio.PE q-bio.PE https://arxiv.org/abs/2510.27030 False False 2510.25053 Scalable predictive processing framework for multitask caregiving robots 2025-10-29 cs.AI;cs.LG;cs.RO;q-bio.NC q-bio.NC https://arxiv.org/abs/2510.25053 False False 2510.25085 Explorations of Epidemiological Dynamics across Multiple Population Hubs 2025-10-29 q-bio.PE q-bio.PE https://arxiv.org/abs/2510.25085 False False 2510.25132 EnzyControl: Adding Functional and Substrate-Specific Control for Enzyme Backbone Generation 2025-10-29 cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2510.25132 False False 2510.25651 Stress distribution in contractile cell monolayers 2025-10-29 q-bio.QM q-bio.QM https://arxiv.org/abs/2510.25651 False False 2510.25119 Effect of an auditory static distractor on the perception of an auditory moving target 2025-10-29 q-bio.NC q-bio.NC https://arxiv.org/abs/2510.25119 False False 2510.25807 Discovering Interpretable Biological Concepts in Single-cell RNA-seq Foundation Models 2025-10-29 cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2510.25807 False False 2510.25359 Thermodynamics of Biological Switches 2025-10-29 physics.stat-mech;q-bio.SC q-bio.SC https://arxiv.org/abs/2510.25359 False False 2510.25943 InputDSA: Demixing then Comparing Recurrent and Externally Driven Dynamics 2025-10-29 cs.LG;cs.NE;q-bio.NC;q-bio.QM q-bio.NC https://arxiv.org/abs/2510.25943 False False 2511.05531 Selection and Stability of Functional Connectivity Features for Classification of Brain Disorders 2025-10-29 eess.IV;q-bio.NC q-bio.NC https://arxiv.org/abs/2511.05531 False False 2511.05536 Gravity-Awareness: Deep Learning Models and LLM Simulation of Human Awareness in Altered Gravity 2025-10-29 cs.AI;cs.LG;eess.SP;q-bio.NC q-bio.NC https://arxiv.org/abs/2511.05536 False False 2511.05537 Bridging Accuracy and Explainability in EEG-based Graph Attention Network for Depression Detection 2025-10-29 cs.LG;eess.IV;eess.SP;q-bio.NC q-bio.NC https://arxiv.org/abs/2511.05537 False False 2511.05529 Selective Diabetic Retinopathy Screening with Accuracy-Weighted Deep Ensembles and Entropy-Guided Abstention 2025-10-29 cs.AI;cs.CV;q-bio.QM q-bio.QM https://arxiv.org/abs/2511.05529 False False 2510.25998 Integrated Information Theory: A Consciousness-First Approach to What Exists 2025-10-29 q-bio.NC q-bio.NC https://arxiv.org/abs/2510.25998 False False 2510.25367 Self-organization, Memory and Learning: From Driven Disordered Systems to Living Matter 2025-10-29 physics.dis-nn;physics.mtrl-sci;physics.soft;physics.stat-mech;q-bio.CB q-bio.CB https://arxiv.org/abs/2510.25367 False False 2510.25814 Optimizing Mirror-Image Peptide Sequence Design for Data Storage via Peptide Bond Cleavage Prediction 2025-10-29 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2510.25814 False False 2510.25976 Brain-IT: Image Reconstruction from fMRI via Brain-Interaction Transformer 2025-10-29 cs.AI;cs.CV;q-bio.NC q-bio.NC https://arxiv.org/abs/2510.25976 False False 2510.25119 Effect of an auditory static distractor on the perception of an auditory moving target 2025-10-29 q-bio.NC q-bio.NC https://arxiv.org/abs/2510.25119 False False 2510.25119 Effect of an auditory static distractor on the perception of an auditory moving target 2025-10-29 q-bio.NC q-bio.NC https://arxiv.org/abs/2510.25119 False False 2511.05536 Gravity-Awareness: Deep Learning Models and LLM Simulation of Human Awareness in Altered Gravity 2025-10-29 cs.AI;cs.LG;eess.SP;q-bio.NC q-bio.NC https://arxiv.org/abs/2511.05536 False False 2511.05536 Gravity-Awareness: Deep Learning Models and LLM Simulation of Human Awareness in Altered Gravity 2025-10-29 cs.AI;cs.LG;eess.SP;q-bio.NC q-bio.NC https://arxiv.org/abs/2511.05536 False False 2510.23975 Machine learning approaches for interpretable antibody property prediction using structural data 2025-10-28 physics.bio-ph;q-bio.QM;stat.ME;stat.ML q-bio.QM https://arxiv.org/abs/2510.23975 False False 2510.24016 The Geometry of Contraction-Induced Flows 2025-10-28 physics.bio-ph;physics.flu-dyn;physics.soft;q-bio.TO q-bio.TO https://arxiv.org/abs/2510.24016 False False 2510.24029 Improved Accuracy of Robot Localization Using 3-D LiDAR in a Hippocampus-Inspired Model 2025-10-28 cs.AI;cs.LG;cs.RO;cs.SY;eess.SY;q-bio.NC q-bio.NC https://arxiv.org/abs/2510.24029 False False 2510.24053 Low-N Protein Activity Optimization with FolDE 2025-10-28 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2510.24053 False False 2510.24359 An N-of-1 Artificial Intelligence Ecosystem for Precision Medicine 2025-10-28 cs.AI;cs.SY;eess.SY;q-bio.QM;stat.AP q-bio.QM https://arxiv.org/abs/2510.24359 False False 2510.24602 Learning to generalize in evolution through annealed population heterogeneity 2025-10-28 physics.dis-nn;physics.stat-mech;q-bio.PE q-bio.PE https://arxiv.org/abs/2510.24602 False False 2510.24647 Quantifying the Effects of Word Length, Frequency, and Predictability on Dyslexia 2025-10-28 cs.CL;q-bio.NC q-bio.NC https://arxiv.org/abs/2510.24647 False False 2510.24649 Local Electromagnetic Fields Enable Fast Redox Sensing by Physically Accelerating Cysteine Oxidation 2025-10-28 q-bio.BM q-bio.BM https://arxiv.org/abs/2510.24649 False False 2510.24670 Pearl: A Foundation Model for Placing Every Atom in the Right Location 2025-10-28 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2510.24670 False False 2510.24805 CT-Less Attenuation Correction Using Multiview Ensemble Conditional Diffusion Model on High-Resolution Uncorrected PET Images 2025-10-28 cs.AI;cs.CV;q-bio.QM q-bio.QM https://arxiv.org/abs/2510.24805 False False 2510.24879 General Microstructure Factor Analysis of Diffusion MRI in Gray-Matter Predicts Cognitive Scores 2025-10-28 physics.med-ph;q-bio.QM q-bio.QM https://arxiv.org/abs/2510.24879 False False 2510.24896 Statistical Field Theory and Neural Structures Dynamics V: Synthesis and extensions 2025-10-28 physics.other;q-bio.NC q-bio.NC https://arxiv.org/abs/2510.24896 False False 2510.25780 Integrated Multi-omics Reveals MEF2C as a Direct Regulator of Microglial Immune and Synaptic Programs 2025-10-28 q-bio.GN q-bio.GN https://arxiv.org/abs/2510.25780 False False 2511.00057 AI-derived layer-specific OCT biomarkers for classification of geographic atrophy 2025-10-28 q-bio.QM q-bio.QM https://arxiv.org/abs/2511.00057 False False 2511.04691 A Penny for Your Thoughts: Decoding Speech from Inexpensive Brain Signals 2025-10-28 cs.AI;cs.CL;cs.HC;cs.SD;eess.AS;q-bio.NC q-bio.NC https://arxiv.org/abs/2511.04691 False False 2511.05527 A Mechanistic Framework for in Silico Optimization of Neuroblastoma Chemo-Immunotherapy 2025-10-28 q-bio.TO q-bio.TO https://arxiv.org/abs/2511.05527 False False 2510.24888 Gosling Designer: a Platform to Democratize Construction and Sharing of Genomics Data Visualization Tools 2025-10-28 q-bio.GN q-bio.GN https://arxiv.org/abs/2510.24888 False False 2510.24314 Motility-Driven Viscoelastic Control of Tissue Morphology in Presomitic Mesoderm 2025-10-28 physics.bio-ph;q-bio.CB;q-bio.TO q-bio.CB https://arxiv.org/abs/2510.24314 False False 2510.24955 geohabnet: An R package for mapping habitat connectivity for biosecurity and conservation 2025-10-28 q-bio.PE;q-bio.QM q-bio.PE https://arxiv.org/abs/2510.24955 False False 2510.24987 scMRDR: A scalable and flexible framework for unpaired single-cell multi-omics data integration 2025-10-28 cs.LG;q-bio.GN;q-bio.QM q-bio.GN https://arxiv.org/abs/2510.24987 False False 2510.24709 Does Object Binding Naturally Emerge in Large Pretrained Vision Transformers? 2025-10-28 cs.AI;cs.CV;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2510.24709 False False 2510.24903 Emergence of Chimeras States in One-dimensional Ising model with Long-Range Diffusion 2025-10-28 physics.dis-nn;physics.stat-mech;q-bio.NC q-bio.NC https://arxiv.org/abs/2510.24903 False False 2510.24879 General Microstructure Factor Analysis of Diffusion MRI in Gray-Matter Predicts Cognitive Scores 2025-10-28 physics.med-ph;q-bio.QM q-bio.QM https://arxiv.org/abs/2510.24879 False False 2510.24879 General Microstructure Factor Analysis of Diffusion MRI in Gray-Matter Predicts Cognitive Scores 2025-10-28 physics.med-ph;q-bio.QM q-bio.QM https://arxiv.org/abs/2510.24879 False False 2510.24987 scMRDR: A scalable and flexible framework for unpaired single-cell multi-omics data integration 2025-10-28 cs.LG;q-bio.GN;q-bio.QM q-bio.GN https://arxiv.org/abs/2510.24987 False False 2510.24987 scMRDR: A scalable and flexible framework for unpaired single-cell multi-omics data integration 2025-10-28 cs.LG;q-bio.GN;q-bio.QM q-bio.GN https://arxiv.org/abs/2510.24987 False False 2510.22913 Clinic-Oriented Feasibility of a Sensor-Fused Wearable for Upper-Limb Function 2025-10-27 cs.HC;cs.LG;cs.RO;eess.SP;q-bio.NC q-bio.NC https://arxiv.org/abs/2510.22913 False False 2510.22924 Neural Recording Power Optimization Through Machine Learning Guided Resolution Reconfiguration 2025-10-27 q-bio.NC q-bio.NC https://arxiv.org/abs/2510.22924 False False 2510.23108 Heart Rate Variability Patterns Reflect Yoga Intervention in Chronically Stressed Pregnant Women: A Quasi-Randomized Controlled Trial 2025-10-27 q-bio.QM q-bio.QM https://arxiv.org/abs/2510.23108 False False 2510.23273 A Novel Framework for Multi-Modal Protein Representation Learning 2025-10-27 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2510.23273 False False 2510.23297 Drivers of Variation in the Optimal Spatial Structure of Collective Information Gatherers 2025-10-27 q-bio.PE q-bio.PE https://arxiv.org/abs/2510.23297 False False 2510.23360 Effect of intratumor heterogeneity in managing the go-or-grow dichotomy of cancer cells: a game theory modeling to understand metastasis 2025-10-27 q-bio.PE q-bio.PE https://arxiv.org/abs/2510.23360 False False 2510.23379 Symbolic Neural Generation with Applications to Lead Discovery in Drug Design 2025-10-27 cs.AI;cs.LG;cs.NE;q-bio.BM q-bio.BM https://arxiv.org/abs/2510.23379 False False 2510.23679 PanDelos-plus: A parallel algorithm for computing sequence homology in pangenomic analysis 2025-10-27 cs.DC;q-bio.GN q-bio.GN https://arxiv.org/abs/2510.23679 False False 2510.23687 Gut decisions based on the liver: A radiomics approach to boost colorectal cancer screening 2025-10-27 eess.IV;q-bio.QM q-bio.QM https://arxiv.org/abs/2510.23687 False False 2510.23391 Conduction velocity of intracortical axons in monkey primary visual cortex grows with distance: implications for computation 2025-10-27 q-bio.NC q-bio.NC https://arxiv.org/abs/2510.23391 False False 2511.05520 sMRI-based Brain Age Estimation in MCI using Persistent Homology 2025-10-27 cs.CV;eess.IV;q-bio.NC q-bio.NC https://arxiv.org/abs/2511.05520 False False 2510.25777 Evaluating the effectiveness of Stochastic CTMC and deterministic models in correlating rabies persistence in human and dog populations 2025-10-27 q-bio.PE q-bio.PE https://arxiv.org/abs/2510.25777 False False 2510.23321 Model-Behavior Alignment under Flexible Evaluation: When the Best-Fitting Model Isn't the Right One 2025-10-27 q-bio.NC;stat.ME q-bio.NC https://arxiv.org/abs/2510.23321 False False 2510.23391 Conduction velocity of intracortical axons in monkey primary visual cortex grows with distance: implications for computation 2025-10-27 q-bio.NC q-bio.NC https://arxiv.org/abs/2510.23391 False False 2510.23379 Symbolic Neural Generation with Applications to Lead Discovery in Drug Design 2025-10-27 cs.AI;cs.LG;cs.NE;q-bio.BM q-bio.BM https://arxiv.org/abs/2510.23379 False False 2510.23379 Symbolic Neural Generation with Applications to Lead Discovery in Drug Design 2025-10-27 cs.AI;cs.LG;cs.NE;q-bio.BM q-bio.BM https://arxiv.org/abs/2510.23379 False False 2511.05517 Stable non-minimal fixed points of threshold-linear networks 2025-10-26 cs.DM;math.CO;q-bio.NC q-bio.NC https://arxiv.org/abs/2511.05517 False False 2512.04087 Human-Centred Evaluation of Text-to-Image Generation Models for Self-expression of Mental Distress: A Dataset Based on GPT-4o 2025-10-26 cs.CL;cs.CV;cs.CY;cs.HC;q-bio.NC q-bio.NC https://arxiv.org/abs/2512.04087 False False 2510.22860 Far from the Shallow: Brain-Predictive Reasoning Embedding through Residual Disentanglement 2025-10-26 cs.CL;q-bio.NC q-bio.NC https://arxiv.org/abs/2510.22860 False False 2510.22130 CAP: Commutative Algebra Prediction of Protein-Nucleic Acid Binding Affinities 2025-10-25 q-bio.QM q-bio.QM https://arxiv.org/abs/2510.22130 False False 2510.22167 Graph Identification of Proteins in Tomograms (GRIP-Tomo) 2.0: Topologically Aware Classification for Proteins 2025-10-25 q-bio.MN;q-bio.QM q-bio.MN https://arxiv.org/abs/2510.22167 False False 2510.22179 Beyond Autophagy: VPS39 Deficiency Triggers Migrasome-Driven Stress Adaptation Revealed by Super-Resolution Imaging 2025-10-25 q-bio.BM;q-bio.CB;q-bio.SC q-bio.BM https://arxiv.org/abs/2510.22179 False False 2510.22197 Multi-dataset Joint Pre-training of Emotional EEG Enables Generalizable Affective Computing 2025-10-25 cs.AI;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2510.22197 False False 2510.22220 Evolution of the lexicon: a probabilistic point of view 2025-10-25 cs.CL;q-bio.PE q-bio.PE https://arxiv.org/abs/2510.22220 False False 2510.22239 Synthetic-to-Real Transfer Learning for Chromatin-Sensitive PWS Microscopy 2025-10-25 cs.LG;eess.IV;q-bio.QM q-bio.QM https://arxiv.org/abs/2510.22239 False False 2510.22262 Lateral Ventricular Brain-Computer Interface System with Lantern-Inspired Electrode for Stable Performance and Memory Decoding 2025-10-25 physics.bio-ph;q-bio.NC q-bio.NC https://arxiv.org/abs/2510.22262 False False 2510.22271 Glymphatic Clearance in the Optic Nerve: A Multidomain Electro-osmostic Model 2025-10-25 physics.bio-ph;q-bio.CB q-bio.CB https://arxiv.org/abs/2510.22271 False False 2510.22304 ODesign: A World Model for Biomolecular Interaction Design 2025-10-25 q-bio.BM q-bio.BM https://arxiv.org/abs/2510.22304 False False 2511.05513 Molecular Dynamics Simulations of Membrane Selectivity of Star Peptides Across Different Bacterial and Mammalian Bilipids 2025-10-25 physics.mtrl-sci;physics.soft;q-bio.BM q-bio.BM https://arxiv.org/abs/2511.05513 False False 2510.22364 Resting-State EEG Network Profiles Associated with Creative Engagement and Creative Self-Efficacy 2025-10-25 eess.SP;q-bio.NC;q-bio.QM q-bio.NC https://arxiv.org/abs/2510.22364 False False 2510.22293 Predicting Metabolic Dysfunction-Associated Steatotic Liver Disease using Machine Learning Methods: A Retrospective Cohort Study 2025-10-25 cs.CY;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2510.22293 False False 2510.22293 Predicting Metabolic Dysfunction-Associated Steatotic Liver Disease using Machine Learning Methods: A Retrospective Cohort Study 2025-10-25 cs.CY;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2510.22293 False False 2510.22293 Predicting Metabolic Dysfunction-Associated Steatotic Liver Disease using Machine Learning Methods: A Retrospective Cohort Study 2025-10-25 cs.CY;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2510.22293 False False 2510.21134 Spatially inhomogeneous two-cycles in an integrodifference equation 2025-10-24 math.DS;math.FA;q-bio.PE q-bio.PE https://arxiv.org/abs/2510.21134 False False 2510.21142 In Silico Mapping of Visual Categorical Selectivity Across the Whole Brain 2025-10-24 q-bio.NC q-bio.NC https://arxiv.org/abs/2510.21142 False False 2510.21281 Physics-Informed Deep Learning for Improved Input Function Estimation in Motion-Blurred Dynamic [${}^{18}$F]FDG PET Images 2025-10-24 cs.CV;q-bio.QM q-bio.QM https://arxiv.org/abs/2510.21281 False False 2510.21371 SIR models with demography, random transmission coefficient and non-autonomous vaccination rate 2025-10-24 math.DS;q-bio.PE q-bio.PE https://arxiv.org/abs/2510.21371 False False 2510.21484 eMZed 3: flexible and interactive development of scalable LC-MS/MS data analysis workflows in Python 2025-10-24 q-bio.QM q-bio.QM https://arxiv.org/abs/2510.21484 False False 2510.21567 Vesicle Translocation into Closed Constrictions as a Function of Molecular Motor Parameters 2025-10-24 q-bio.SC q-bio.SC https://arxiv.org/abs/2510.21567 False False 2510.21585 REVE: A Foundation Model for EEG -- Adapting to Any Setup with Large-Scale Pretraining on 25,000 Subjects 2025-10-24 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2510.21585 False False 2510.21588 Contribution of task-irrelevant stimuli to drift of neural representations 2025-10-24 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2510.21588 False False 2510.21664 Foundation Models in Dermatopathology: Skin Tissue Classification 2025-10-24 cs.CV;q-bio.QM q-bio.QM https://arxiv.org/abs/2510.21664 False False 2510.21996 Limitations of Proprioceptive Working Memory 2025-10-24 q-bio.NC q-bio.NC https://arxiv.org/abs/2510.21996 False False 2510.22008 A Multimodal Human Protein Embeddings Database: DeepDrug Protein Embeddings Bank (DPEB) 2025-10-24 cs.LG;q-bio.MN q-bio.MN https://arxiv.org/abs/2510.22008 False False 2510.22022 Control of neural field equations with step-function inputs 2025-10-24 cs.SY;eess.SY;math.AP;math.DS;math.OC;q-bio.NC q-bio.NC https://arxiv.org/abs/2510.22022 False False 2510.22039 Predictive Coding Enhances Meta-RL To Achieve Interpretable Bayes-Optimal Belief Representation Under Partial Observability 2025-10-24 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2510.22039 False False 2510.21161 RiboPO: Preference Optimization for Structure- and Stability-Aware RNA Design 2025-10-24 q-bio.BM q-bio.BM https://arxiv.org/abs/2510.21161 False False 2510.21980 Boltzmann Graph Ensemble Embeddings for Aptamer Libraries 2025-10-24 cs.LG;math.PR;q-bio.QM;stat.ML q-bio.QM https://arxiv.org/abs/2510.21980 False False 2510.22033 Linearized Optimal Transport for Analysis of High-Dimensional Point-Cloud and Single-Cell Data 2025-10-24 cs.LG;q-bio.QM;stat.ML q-bio.QM https://arxiv.org/abs/2510.22033 False False 2511.05510 TEMPO: Temporal Multi-scale Autoregressive Generation of Protein Conformational Ensembles 2025-10-24 cs.AI;q-bio.BM q-bio.BM https://arxiv.org/abs/2511.05510 False False 2510.23639 Integrating Genomics into Multimodal EHR Foundation Models 2025-10-24 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2510.23639 False False 2510.21265 EEG Dynamic Microstate Patterns Induced by Pulsed Wave Transcranial Photobiomodulation Therapy 2025-10-24 q-bio.NC q-bio.NC https://arxiv.org/abs/2510.21265 False False 2510.21280 WhaleVAD-BPN: Improving Baleen Whale Call Detection with Boundary Proposal Networks and Post-processing Optimisation 2025-10-24 cs.AI;cs.LG;cs.SD;eess.AS;q-bio.QM q-bio.QM https://arxiv.org/abs/2510.21280 False False 2510.21588 Contribution of task-irrelevant stimuli to drift of neural representations 2025-10-24 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2510.21588 False False 2510.21588 Contribution of task-irrelevant stimuli to drift of neural representations 2025-10-24 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2510.21588 False False 2510.21484 eMZed 3: flexible and interactive development of scalable LC-MS/MS data analysis workflows in Python 2025-10-24 q-bio.QM q-bio.QM https://arxiv.org/abs/2510.21484 False False 2510.21484 eMZed 3: flexible and interactive development of scalable LC-MS/MS data analysis workflows in Python 2025-10-24 q-bio.QM q-bio.QM https://arxiv.org/abs/2510.21484 False False 2510.21484 eMZed 3: flexible and interactive development of scalable LC-MS/MS data analysis workflows in Python 2025-10-24 q-bio.QM q-bio.QM https://arxiv.org/abs/2510.21484 False False 2510.21484 eMZed 3: flexible and interactive development of scalable LC-MS/MS data analysis workflows in Python 2025-10-24 q-bio.QM q-bio.QM https://arxiv.org/abs/2510.21484 False False 2510.22022 Control of neural field equations with step-function inputs 2025-10-24 cs.SY;eess.SY;math.AP;math.DS;math.OC;q-bio.NC q-bio.NC https://arxiv.org/abs/2510.22022 False False 2510.22022 Control of neural field equations with step-function inputs 2025-10-24 cs.SY;eess.SY;math.AP;math.DS;math.OC;q-bio.NC q-bio.NC https://arxiv.org/abs/2510.22022 False False 2510.20323 Convexity of Neural Codes with Four Maximal Codewords 2025-10-23 math.CO;q-bio.NC q-bio.NC https://arxiv.org/abs/2510.20323 False False 2510.20500 Fitness inference tested by in silico population genetics 2025-10-23 physics.bio-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2510.20500 False False 2510.20709 Separating the what and how of compositional computation to enable reuse and continual learning 2025-10-23 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2510.20709 False False 2510.20788 Predicting Protein-Nucleic Acid Flexibility Using Persistent Sheaf Laplacians 2025-10-23 q-bio.BM;q-bio.QM q-bio.BM https://arxiv.org/abs/2510.20788 False False 2510.20866 Ultra-wideband radar to measure in vivo musculoskeletal forces 2025-10-23 q-bio.QM q-bio.QM https://arxiv.org/abs/2510.20866 False False 2510.20966 Scalable inference of functional neural connectivity at submillisecond timescales 2025-10-23 q-bio.NC;stat.ML q-bio.NC https://arxiv.org/abs/2510.20966 False False 2510.20958 NeuroPilot: A Realtime Brain-Computer Interface system to enhance concentration of students in online learning 2025-10-23 cs.HC;cs.LG;eess.SP;q-bio.NC q-bio.NC https://arxiv.org/abs/2510.20958 False False 2511.01885 Mirror-Neuron Patterns in AI Alignment 2025-10-23 cs.AI;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2511.01885 False False 2510.20792 BadGraph: A Backdoor Attack Against Latent Diffusion Model for Text-Guided Graph Generation 2025-10-23 cs.CL;cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2510.20792 False False 2510.20792 BadGraph: A Backdoor Attack Against Latent Diffusion Model for Text-Guided Graph Generation 2025-10-23 cs.CL;cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2510.20792 False False 2510.20792 BadGraph: A Backdoor Attack Against Latent Diffusion Model for Text-Guided Graph Generation 2025-10-23 cs.CL;cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2510.20792 False False 2510.20792 BadGraph: A Backdoor Attack Against Latent Diffusion Model for Text-Guided Graph Generation 2025-10-23 cs.CL;cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2510.20792 False False 2510.20792 BadGraph: A Backdoor Attack Against Latent Diffusion Model for Text-Guided Graph Generation 2025-10-23 cs.CL;cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2510.20792 False False 2510.20500 Fitness inference tested by in silico population genetics 2025-10-23 physics.bio-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2510.20500 False False 2510.20500 Fitness inference tested by in silico population genetics 2025-10-23 physics.bio-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2510.20500 False False 2510.19294 Integrative Analysis of Epigenetic, Transcriptomic, and Metabolomic Responses to Arsenic Exposure Using Coupled Matrix Factorization 2025-10-22 q-bio.GN q-bio.GN https://arxiv.org/abs/2510.19294 False False 2510.19455 Automated Morphological Analysis of Neurons in Fluorescence Microscopy Using YOLOv8 2025-10-22 cs.CV;eess.IV;q-bio.QM q-bio.QM https://arxiv.org/abs/2510.19455 False False 2510.19484 KnowMol: Advancing Molecular Large Language Models with Multi-Level Chemical Knowledge 2025-10-22 cs.AI;cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2510.19484 False False 2510.19499 Interactive visualization of kidney micro-compartmental segmentations and associated pathomics on whole slide images 2025-10-22 cs.HC;q-bio.QM q-bio.QM https://arxiv.org/abs/2510.19499 False False 2510.19532 EasyVitessce: auto-magically adding interactivity to Scverse single-cell and spatial biology plots 2025-10-22 cs.HC;q-bio.QM q-bio.QM https://arxiv.org/abs/2510.19532 False False 2510.19867 Artificial Intelligence Powered Identification of Potential Antidiabetic Compounds in Ficus religiosa 2025-10-22 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2510.19867 False False 2510.19870 Transforming Multi-Omics Integration with GANs: Applications in Alzheimer's and Cancer 2025-10-22 cs.LG;q-bio.QM;stat.ML q-bio.QM https://arxiv.org/abs/2510.19870 False False 2510.19874 Advancing Drug Development Through Strategic Cell Line and Compound Selection Using Drug Response Profiles 2025-10-22 q-bio.QM q-bio.QM https://arxiv.org/abs/2510.19874 False False 2510.19887 Compressing Biology: Evaluating the Stable Diffusion VAE for Phenotypic Drug Discovery 2025-10-22 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2510.19887 False False 2510.19947 Modelling multiscale architecture of biofilm extracellular matrix and its role in oxygen transport 2025-10-22 physics.soft;q-bio.BM q-bio.BM https://arxiv.org/abs/2510.19947 False False 2510.19948 Drug-disease networks and drug repurposing 2025-10-22 cs.SI;q-bio.QM q-bio.QM https://arxiv.org/abs/2510.19948 False False 2510.20855 BrainCognizer: Brain Decoding with Human Visual Cognition Simulation for fMRI-to-Image Reconstruction 2025-10-22 q-bio.NC q-bio.NC https://arxiv.org/abs/2510.20855 False False 2510.20859 Vision-language models learn the geometry of human perceptual space 2025-10-22 q-bio.NC q-bio.NC https://arxiv.org/abs/2510.20859 False False 2510.19660 Machine Olfaction and Embedded AI Are Shaping the New Global Sensing Industry 2025-10-22 cs.ET;q-bio.BM q-bio.BM https://arxiv.org/abs/2510.19660 False False 2510.19749 BATIS: Bayesian Approaches for Targeted Improvement of Species Distribution Models 2025-10-22 cs.LG;q-bio.PE;q-bio.QM q-bio.PE https://arxiv.org/abs/2510.19749 False False 2510.19764 A flexible framework for structural plasticity in GPU-accelerated sparse spiking neural networks 2025-10-22 cs.NE;q-bio.NC q-bio.NC https://arxiv.org/abs/2510.19764 False False 2510.19764 A flexible framework for structural plasticity in GPU-accelerated sparse spiking neural networks 2025-10-22 cs.NE;q-bio.NC q-bio.NC https://arxiv.org/abs/2510.19764 False False 2510.19947 Modeling multiscale architecture of biofilm extracellular matrix and its role in oxygen transport 2025-10-22 physics.soft;q-bio.BM q-bio.BM https://arxiv.org/abs/2510.19947 False False 2510.19947 Modeling multiscale architecture of biofilm extracellular matrix and its role in oxygen transport 2025-10-22 physics.soft;q-bio.BM q-bio.BM https://arxiv.org/abs/2510.19947 False False 2510.19229 Brain-Inspired Perspective on Configurations: Unsupervised Similarity and Early Cognition 2025-10-22 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2510.19229 False False 2510.19229 Brain-Inspired Perspective on Configurations: Unsupervised Similarity and Early Cognition 2025-10-22 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2510.19229 False False 2510.18571 A Multi-Evidence Framework Rescues Low-Power Prognostic Signals and Rejects Statistical Artifacts in Cancer Genomics 2025-10-21 cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2510.18571 False False 2510.18575 HeFS: Helper-Enhanced Feature Selection via Pareto-Optimized Genetic Search 2025-10-21 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2510.18575 False False 2510.18589 Inheritance entropy quantifies epigenetic regulation of cell-cycle exit in human bone marrow stromal cells 2025-10-21 physics.bio-ph;physics.stat-mech;q-bio.PE q-bio.PE https://arxiv.org/abs/2510.18589 False False 2510.18771 Mechanical activity enables patterning and discrimination at the immune synapse 2025-10-21 physics.bio-ph;physics.soft;q-bio.CB q-bio.CB https://arxiv.org/abs/2510.18771 False False 2510.18790 Protein generation with embedding learning for motif diversification 2025-10-21 physics.bio-ph;q-bio.QM;stat.ML q-bio.QM https://arxiv.org/abs/2510.18790 False False 2510.18929 ECKO: Explainable Clinical Knowledge for Oncology 2025-10-21 q-bio.QM q-bio.QM https://arxiv.org/abs/2510.18929 False False 2510.20846 This EEG Looks Like These EEGs: Interpretable Interictal Epileptiform Discharge Detection With ProtoEEG-kNN 2025-10-21 cs.AI;cs.CV;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2510.20846 False False 2510.20847 Integrated representational signatures strengthen specificity in brains and models 2025-10-21 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2510.20847 False False 2510.20848 Multi-stable oscillations in cortical networks with two classes of inhibition 2025-10-21 math.DS;q-bio.NC q-bio.NC https://arxiv.org/abs/2510.20848 False False 2511.01868 Condition-Invariant fMRI Decoding of Speech Intelligibility with Deep State Space Model 2025-10-21 cs.LG;cs.SD;eess.AS;eess.SP;q-bio.NC q-bio.NC https://arxiv.org/abs/2511.01868 False False 2510.19090 Learning noisy tissue dynamics across time scales 2025-10-21 cs.LG;physics.bio-ph;physics.soft;q-bio.QM q-bio.QM https://arxiv.org/abs/2510.19090 False False 2510.19021 Category learning in deep neural networks: Information content and geometry of internal representations 2025-10-21 cs.IT;cs.LG;math.IT;q-bio.NC q-bio.NC https://arxiv.org/abs/2510.19021 False False 2510.18870 Triangle Multiplication Is All You Need For Biomolecular Structure Representations 2025-10-21 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2510.18870 False False 2510.18387 Quantification of dual-state 5-ALA-induced PpIX fluorescence: Methodology and validation in tissue-mimicking phantoms 2025-10-21 eess.IV;eess.SP;physics.med-ph;q-bio.QM q-bio.QM https://arxiv.org/abs/2510.18387 False False 2510.18516 Decoding Dynamic Visual Experience from Calcium Imaging via Cell-Pattern-Aware Pretraining 2025-10-21 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2510.18516 False False 2510.18808 Does Feedback Alignment Work at Biological Timescales? 2025-10-21 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2510.18808 False False 2511.01870 CytoNet: A Foundation Model for the Human Cerebral Cortex at Cellular Resolution 2025-10-21 cs.AI;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2511.01870 False False 2510.20847 Integrated representational signatures strengthen specificity in brains and models 2025-10-21 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2510.20847 False False 2510.18516 Decoding Dynamic Visual Experience from Calcium Imaging via Cell-Pattern-Aware Pretraining 2025-10-21 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2510.18516 False False 2510.18516 Decoding Dynamic Visual Experience from Calcium Imaging via Cell-Pattern-Aware Pretraining 2025-10-21 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2510.18516 False False 2510.18589 Inheritance Entropy: A Model-Independent Method to Probe the Hereditary Structure of Cell Lineage Trees 2025-10-21 physics.bio-ph;physics.stat-mech;q-bio.PE q-bio.PE https://arxiv.org/abs/2510.18589 False False 2510.18589 Inheritance Entropy: A Model-Independent Method to Probe the Hereditary Structure of Cell Lineage Trees 2025-10-21 physics.bio-ph;physics.stat-mech;q-bio.PE q-bio.PE https://arxiv.org/abs/2510.18589 False False 2510.17187 A Standardized Benchmark for Machine-Learned Molecular Dynamics using Weighted Ensemble Sampling 2025-10-20 cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2510.17187 False False 2510.17273 A Tractography Analysis Framework Using Diffusion Maps to Study Thalamic Connectivity in Traumatic Brain Injury 2025-10-20 q-bio.QM q-bio.QM https://arxiv.org/abs/2510.17273 False False 2510.17492 A theory for self-sustained balanced states in absence of strong external currents 2025-10-20 physics.CD;physics.bio-ph;q-bio.NC q-bio.NC https://arxiv.org/abs/2510.17492 False False 2510.17554 Mendelian randomization in a multi-ancestry world: reflections and practical advice 2025-10-20 q-bio.PE;stat.OT q-bio.PE https://arxiv.org/abs/2510.17554 False False 2510.17593 Paradoxical increase of capacity due to spurious overlaps in attractor networks 2025-10-20 q-bio.NC q-bio.NC https://arxiv.org/abs/2510.17593 False False 2510.17701 Curvature instability of an active gel growing on a wavy membrane 2025-10-20 physics.bio-ph;physics.soft;q-bio.CB q-bio.CB https://arxiv.org/abs/2510.17701 False False 2510.17754 Thickness of epithelia on wavy substrates: measurements and continuous models 2025-10-20 physics.bio-ph;physics.soft;q-bio.TO q-bio.TO https://arxiv.org/abs/2510.17754 False False 2510.17916 Self-Evidencing Through Hierarchical Gradient Decomposition: A Dissipative System That Maintains Non-Equilibrium Steady-State by Minimizing Variational Free Energy 2025-10-20 cs.AI;cs.LG;cs.NE;q-bio.NC q-bio.NC https://arxiv.org/abs/2510.17916 False False 2510.17920 CBINNS: Cancer Biology-Informed Neural Network for Unknown Parameter Estimation and Missing Physics Identification 2025-10-20 cs.AI;q-bio.QM q-bio.QM https://arxiv.org/abs/2510.17920 False False 2510.18103 Enhancing mortality prediction in cardiac arrest ICU patients through meta-modeling of structured clinical data from MIMIC-IV 2025-10-20 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2510.18103 False False 2510.18037 Benchmarking Probabilistic Time Series Forecasting Models on Neural Activity 2025-10-20 cs.LG;q-bio.NC;stat.ML q-bio.NC https://arxiv.org/abs/2510.18037 False False 2510.17154 A Minimal Quantitative Model of Perceptual Suppression and Breakthrough in Visual Rivalry 2025-10-20 q-bio.NC q-bio.NC https://arxiv.org/abs/2510.17154 False False 2511.00013 Using machine learning methods to predict cognitive age from psychophysiological tests 2025-10-20 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2511.00013 False False 2510.16674 Evaluating protein binding interfaces with PUMBA 2025-10-19 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2510.16674 False False 2510.16824 ProtoMol: Enhancing Molecular Property Prediction via Prototype-Guided Multimodal Learning 2025-10-19 cs.LG;q-bio.MN q-bio.MN https://arxiv.org/abs/2510.16824 False False 2510.17016 Ambush strategy impacts species predominance and coexistence in rock-paper-scissors models 2025-10-19 physics.AO;physics.PS;physics.app-ph;physics.bio-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2510.17016 False False 2510.19843 Memory Effects in Disease Modelling Through Kernel Estimates with Oscillatory Time History 2025-10-19 q-bio.PE q-bio.PE https://arxiv.org/abs/2510.19843 False False 2510.16942 Vertical Ground Reaction Forces Waveform Flattening during Gait in Women with Knee Osteoarthritis 2025-10-19 q-bio.TO q-bio.TO https://arxiv.org/abs/2510.16942 False False 2510.16304 Parameter Identifiability of RNA Dynamics in PDE Transport Models of Fluorescence Recovery After Photobleaching 2025-10-18 math.AP;q-bio.QM q-bio.QM https://arxiv.org/abs/2510.16304 False False 2510.16327 Quantifying the compressibility of the human brain 2025-10-18 physics.bio-ph;q-bio.NC q-bio.NC https://arxiv.org/abs/2510.16327 False False 2510.16510 CryoDyna: Multiscale end-to-end modeling of cryo-EM macromolecule dynamics with physics-aware neural network 2025-10-18 q-bio.BM q-bio.BM https://arxiv.org/abs/2510.16510 False False 2510.16536 Few-Label Multimodal Modeling of SNP Variants and ECG Phenotypes Using Large Language Models for Cardiovascular Risk Stratification 2025-10-18 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2510.16536 False False 2510.16590 Atom-anchored LLMs speak Chemistry: A Retrosynthesis Demonstration 2025-10-18 cs.AI;cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2510.16590 False False 2510.16612 Accelerated Learning on Large Scale Screens using Generative Library Models 2025-10-18 cs.LG;q-bio.BM;stat.ML q-bio.BM https://arxiv.org/abs/2510.16612 False False 2510.16656 Simulation-free Structure Learning for Stochastic Dynamics 2025-10-18 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2510.16656 False False 2510.16347 Computer Navigated Spinal Surgery Using Magnetic Resonance Imaging and Augmented Reality 2025-10-18 eess.IV;q-bio.QM q-bio.QM https://arxiv.org/abs/2510.16347 False False 2510.18889 Prejudice driven spite: A discontinuous phase transition in ultimatum game 2025-10-18 econ.TH;physics.AO;physics.soc-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2510.18889 False False 2510.26806 Molecular glues stabilize water-mediated hydrogen bonds in ternary complexes 2025-10-18 q-bio.BM q-bio.BM https://arxiv.org/abs/2510.26806 False False 2510.16590 Atom-anchored LLMs speak Chemistry: A Retrosynthesis Demonstration 2025-10-18 cs.AI;cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2510.16590 False False 2510.16590 Atom-anchored LLMs speak Chemistry: A Retrosynthesis Demonstration 2025-10-18 cs.AI;cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2510.16590 False False 2510.15478 Sparing of DNA irradiated with Ultra-High Dose-Rates under Physiological Oxygen and Salt conditions 2025-10-17 physics.bio-ph;physics.chem-ph;physics.med-ph;q-bio.BM q-bio.BM https://arxiv.org/abs/2510.15478 False False 2510.15811 Fertilizers Fuel, Insecticides Stabilize: Resolving the Paradox of Enrichment in Agriculture 2025-10-17 q-bio.PE q-bio.PE https://arxiv.org/abs/2510.15811 False False 2510.15826 Quantifying the Risk of Long Term Chikungunya Persistence in Miami Dade County 2025-10-17 q-bio.PE q-bio.PE https://arxiv.org/abs/2510.15826 False False 2510.16080 TriAgent: Automated Biomarker Discovery with Deep Research Grounding for Triage in Acute Care by LLM-Based Multi-Agent Collaboration 2025-10-17 cs.AI;q-bio.QM q-bio.QM https://arxiv.org/abs/2510.16080 False False 2510.16093 Identifying multi-omics interactions for lung cancer drug targets discovery using Kernel Machine Regression 2025-10-17 cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2510.16093 False False 2510.16253 Protein Folding with Neural Ordinary Differential Equations 2025-10-17 cs.AI;cs.LG;q-bio.BM;q-bio.QM;stat.ML q-bio.BM https://arxiv.org/abs/2510.16253 False False 2510.16216 Topological decoding of grid cell activity via path lifting to covering spaces 2025-10-17 math.AT;q-bio.NC q-bio.NC https://arxiv.org/abs/2510.16216 False False 2510.20839 Consciousness, natural and artificial: an evolutionary advantage for reasoning on reactive substrates 2025-10-17 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2510.20839 False False 2510.20840 GEPOC ABM, Generic Population Concept -- Agent-Based Model, Version 2.2 2025-10-17 q-bio.PE q-bio.PE https://arxiv.org/abs/2510.20840 False False 2510.16130 BASIN: Bayesian mAtrix variate normal model with Spatial and sparsIty priors in Non-negative deconvolution 2025-10-17 q-bio.QM;stat.CO q-bio.QM https://arxiv.org/abs/2510.16130 False False 2510.24752 Mechanically Regulated Cranial Growth in Infancy: A Computational Approach to Predicting Craniosynostosis 2025-10-17 physics.bio-ph;q-bio.TO q-bio.TO https://arxiv.org/abs/2510.24752 False False 2510.24751 How can methods for classifying and clustering trajectories be used for prevention trials? An example in Alzheimer's disease area 2025-10-17 q-bio.NC;stat.AP;stat.ME q-bio.NC https://arxiv.org/abs/2510.24751 False False 2510.15542 SpikeFit: Towards Optimal Deployment of Spiking Networks on Neuromorphic Hardware 2025-10-17 cs.LG;cs.NE;q-bio.NC q-bio.NC https://arxiv.org/abs/2510.15542 False False 2510.15745 State of Brain Emulation Report 2025 2025-10-17 q-bio.NC q-bio.NC https://arxiv.org/abs/2510.15745 False False 2511.05505 Rewiring Human Brain Networks via Lightweight Dynamic Connectivity Framework: An EEG-Based Stress Validation 2025-10-17 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2511.05505 False False 2510.16082 BioGen: An Evidence-Grounded Framework for Interpreting RNA-seq Gene Clusters in Antimicrobial Resistance Research 2025-10-17 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2510.16082 False False 2510.15828 GENESIS: A Generative Model of Episodic-Semantic Interaction 2025-10-17 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2510.15828 False False 2510.16082 BIOGEN: Evidence-Grounded Multi-Agent Reasoning Framework for Transcriptomic Interpretation in Antimicrobial Resistance 2025-10-17 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2510.16082 False False 2510.20839 On the evolutionary cognitive pressure for experiential awareness: do machines need it? 2025-10-17 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2510.20839 False False 2510.20839 On the evolutionary cognitive pressure for experiential awareness: do machines need it? 2025-10-17 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2510.20839 False False 2510.16253 Protein Folding with Neural Ordinary Differential Equations 2025-10-17 cs.AI;cs.LG;q-bio.BM;q-bio.QM;stat.ML q-bio.BM https://arxiv.org/abs/2510.16253 False False 2510.16253 Protein Folding with Neural Ordinary Differential Equations 2025-10-17 cs.AI;cs.LG;q-bio.BM;q-bio.QM;stat.ML q-bio.BM https://arxiv.org/abs/2510.16253 False False 2511.05505 Rewiring Human Brain Networks via Lightweight Dynamic Connectivity Framework: An EEG-Based Stress Validation 2025-10-17 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2511.05505 False False 2511.05505 Rewiring Human Brain Networks via Lightweight Dynamic Connectivity Framework: An EEG-Based Stress Validation 2025-10-17 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2511.05505 False False 2510.16216 Topological decoding of grid cell activity via path lifting to covering spaces 2025-10-17 math.AT;q-bio.NC q-bio.NC https://arxiv.org/abs/2510.16216 False False 2510.16216 Topological decoding of grid cell activity via path lifting to covering spaces 2025-10-17 math.AT;q-bio.NC q-bio.NC https://arxiv.org/abs/2510.16216 False False 2510.14382 "Joint encoding of ""what"" and ""when"" predictions through error-modulated plasticity in biologically-plausible spiking networks" 2025-10-16 q-bio.NC q-bio.NC https://arxiv.org/abs/2510.14382 False False 2510.14188 Using Information Geometry to Characterize Higher-Order Interactions in EEG 2025-10-16 q-bio.NC;q-bio.QM q-bio.NC https://arxiv.org/abs/2510.14188 False False 2510.14227 Sensorimotor Contingencies and The Sensorimotor Approach to Cognition 2025-10-16 q-bio.NC q-bio.NC https://arxiv.org/abs/2510.14227 False False 2510.14282 Evolvable Chemotons: Toward the Integration of Autonomy and Evolution 2025-10-16 q-bio.PE q-bio.PE https://arxiv.org/abs/2510.14282 False False 2510.14311 Propagation speed of traveling waves for diffusive Lotka-Volterra system with strong competition 2025-10-16 math.AP;q-bio.PE q-bio.PE https://arxiv.org/abs/2510.14311 False False 2510.14455 Coder as Editor: Code-driven Interpretable Molecular Optimization 2025-10-16 cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2510.14455 False False 2510.14486 Semantic representations emerge in biologically inspired ensembles of cross-supervising neural networks 2025-10-16 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2510.14486 False False 2510.14601 Nonlinear shift along the sensorimotor-association-axis in brain responses to task performance 2025-10-16 q-bio.NC q-bio.NC https://arxiv.org/abs/2510.14601 False False 2510.14917 Cumulants, Moments and Selection: The Connection Between Evolution and Statistics 2025-10-16 q-bio.PE q-bio.PE https://arxiv.org/abs/2510.14917 False False 2510.14787 A Human-Vector Susceptible-Infected-Susceptible Model for Analyzing and Controlling the Spread of Vector-Borne Diseases 2025-10-16 cs.SY;eess.SY;math.OC;q-bio.PE q-bio.PE https://arxiv.org/abs/2510.14787 False False 2510.26804 EARS-UDE: Evaluating Auditory Response in Sensory Overload with Universal Differential Equations 2025-10-16 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2510.26804 False False 2510.14481 Viral population dynamics at the cellular level, considering the replication cycle 2025-10-16 q-bio.PE;q-bio.QM q-bio.PE https://arxiv.org/abs/2510.14481 False False 2510.15127 Investigating the consequences of mechanical ventilation in clinical intensive care settings through an evolutionary game-theoretic framework 2025-10-16 cs.LG;math.OC;q-bio.QM q-bio.QM https://arxiv.org/abs/2510.15127 False False 2510.14382 "Joint encoding of ""what"" and ""when"" predictions through error-modulated plasticity in biologically-plausible spiking networks" 2025-10-16 q-bio.NC q-bio.NC https://arxiv.org/abs/2510.14382 False False 2510.14481 Viral population dynamics at the cellular level, considering the replication cycle 2025-10-16 q-bio.PE;q-bio.QM q-bio.PE https://arxiv.org/abs/2510.14481 False False 2510.14481 Viral population dynamics at the cellular level, considering the replication cycle 2025-10-16 q-bio.PE;q-bio.QM q-bio.PE https://arxiv.org/abs/2510.14481 False False 2510.14481 Viral population dynamics at the cellular level, considering the replication cycle 2025-10-16 q-bio.PE;q-bio.QM q-bio.PE https://arxiv.org/abs/2510.14481 False False 2510.14481 Viral population dynamics at the cellular level, considering the replication cycle 2025-10-16 q-bio.PE;q-bio.QM q-bio.PE https://arxiv.org/abs/2510.14481 False False 2510.15127 Inferring Relative Consequences of Mechanical Ventilation from Observational Data Using Game-Based Comparisons 2025-10-16 cs.LG;math.OC;q-bio.QM q-bio.QM https://arxiv.org/abs/2510.15127 False False 2510.15127 Inferring Relative Consequences of Mechanical Ventilation from Observational Data Using Game-Based Comparisons 2025-10-16 cs.LG;math.OC;q-bio.QM q-bio.QM https://arxiv.org/abs/2510.15127 False False 2510.15127 Inferring Relative Consequences of Mechanical Ventilation from Observational Data Using Game-Based Comparisons 2025-10-16 cs.LG;math.OC;q-bio.QM q-bio.QM https://arxiv.org/abs/2510.15127 False False 2510.15127 Inferring Relative Consequences of Mechanical Ventilation from Observational Data Using Game-Based Comparisons 2025-10-16 cs.LG;math.OC;q-bio.QM q-bio.QM https://arxiv.org/abs/2510.15127 False False 2510.13127 Precision Design of Cyclic Peptides using AlphaFold 2025-10-15 q-bio.BM q-bio.BM https://arxiv.org/abs/2510.13127 False False 2510.13156 Bifurcation of spiking oscillations from a center in resonate-and-fire neurons 2025-10-15 math.DS;q-bio.NC q-bio.NC https://arxiv.org/abs/2510.13156 False False 2510.13270 Power-laws in phylogenetic trees and the preferential coalescent 2025-10-15 q-bio.PE;stat.OT q-bio.PE https://arxiv.org/abs/2510.13270 False False 2510.13431 Modeling Adoptive Cell Therapy in Bladder Cancer from Sparse Biological Data using PINNs 2025-10-15 cs.LG;q-bio.CB;q-bio.PE q-bio.CB https://arxiv.org/abs/2510.13431 False False 2510.13480 A Quantitative Holographic Agglutination Assay for Immunoglobulin A 2025-10-15 physics.med-ph;physics.optics;q-bio.QM q-bio.QM https://arxiv.org/abs/2510.13480 False False 2510.13519 Data-Driven Reduced Modeling of Recurrent Neural Networks 2025-10-15 math.DS;q-bio.NC q-bio.NC https://arxiv.org/abs/2510.13519 False False 2510.13520 qLOOK: A Minimal Information System for Digital Storage and Reproducible Analysis of qPCR experiments 2025-10-15 q-bio.QM q-bio.QM https://arxiv.org/abs/2510.13520 False False 2510.13672 Hierarchical Bayesian Modeling of Dengue in Recife, Brazil (2015-2024): The Role of Spatial Granularity and Data Quality for Epidemiological Risk Mapping 2025-10-15 q-bio.QM;stat.AP;stat.ME q-bio.QM https://arxiv.org/abs/2510.13672 False False 2510.13768 Scaling Vision Transformers for Functional MRI with Flat Maps 2025-10-15 cs.AI;cs.CV;q-bio.NC q-bio.NC https://arxiv.org/abs/2510.13768 False False 2510.13911 OralGPT: A Two-Stage Vision-Language Model for Oral Mucosal Disease Diagnosis and Description 2025-10-15 q-bio.QM q-bio.QM https://arxiv.org/abs/2510.13911 False False 2510.13932 SUND: simulation using nonlinear dynamic models - a toolbox for simulating multi-level, time-dynamic systems in a modular way 2025-10-15 q-bio.QM q-bio.QM https://arxiv.org/abs/2510.13932 False False 2510.13118 Omni-QALAS: Optimized Multiparametric Imaging for Simultaneous T1, T2 and Myelin Water Mapping 2025-10-15 q-bio.QM q-bio.QM https://arxiv.org/abs/2510.13118 False False 2510.14143 cubic: CUDA-accelerated 3D Bioimage Computing 2025-10-15 cs.CV;q-bio.QM q-bio.QM https://arxiv.org/abs/2510.14143 False False 2510.13658 Spherical Radiomics -- A Novel Approach to Glioblastoma Radiogenomic Analysis of Heterogeneity 2025-10-15 physics.med-ph;q-bio.QM q-bio.QM https://arxiv.org/abs/2510.13658 False False 2510.20835 Rethinking the Simulation vs. Rendering Dichotomy: No Free Lunch in Spatial World Modelling 2025-10-15 q-bio.NC q-bio.NC https://arxiv.org/abs/2510.20835 False False 2510.24741 An in-silico integration of neurodevelopmental and dopaminergic views of schizophrenia 2025-10-15 q-bio.NC q-bio.NC https://arxiv.org/abs/2510.24741 False False 2510.16013 AGNES: Adaptive Graph Neural Network and Dynamic Programming Hybrid Framework for Real-Time Nanopore Seed Chaining 2025-10-15 cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2510.16013 False False 2510.13688 Jacobian-Based Interpretation of Nonlinear Neural Encoding Model 2025-10-15 q-bio.NC q-bio.NC https://arxiv.org/abs/2510.13688 False False 2510.13768 Scaling Vision Transformers for Functional MRI with Flat Maps 2025-10-15 cs.AI;cs.CV;q-bio.NC q-bio.NC https://arxiv.org/abs/2510.13768 False False 2510.13768 Scaling Vision Transformers for Functional MRI with Flat Maps 2025-10-15 cs.AI;cs.CV;q-bio.NC q-bio.NC https://arxiv.org/abs/2510.13768 False False 2510.12059 An Efficient Algorithm for Exploring RNA Branching Conformations under the Nearest-Neighbor Thermodynamic Model 2025-10-14 q-bio.BM q-bio.BM https://arxiv.org/abs/2510.12059 False False 2510.12228 Readout Representation: Redefining Neural Codes by Input Recovery 2025-10-14 q-bio.NC q-bio.NC https://arxiv.org/abs/2510.12228 False False 2510.12584 Recent Advances in Microfluidics and Bioelectronics for Three-Dimensional Organoid Interfaces 2025-10-14 q-bio.TO q-bio.TO https://arxiv.org/abs/2510.12584 False False 2510.12614 Modeling Epidemics on Multiplex Networks: Epidemic Threshold and Basic Reproduction Number 2025-10-14 physics.AO;physics.soc-ph;physics.stat-mech;q-bio.PE q-bio.PE https://arxiv.org/abs/2510.12614 False False 2510.12719 Multitask finetuning and acceleration of chemical pretrained models for small molecule drug property prediction 2025-10-14 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2510.12719 False False 2510.12751 Non-linear associations of amyloid-$β$ with resting-state functional networks and their cognitive relevance in a large community-based cohort of cognitively normal older adults 2025-10-14 q-bio.NC q-bio.NC https://arxiv.org/abs/2510.12751 False False 2510.12763 Disentangling Neurodegeneration with Brain Age Gap Prediction Models: A Graph Signal Processing Perspective 2025-10-14 cs.AI;eess.SP;q-bio.QM q-bio.QM https://arxiv.org/abs/2510.12763 False False 2510.12772 TopROI: A topology-informed network approach for tissue partitioning 2025-10-14 math.AT;q-bio.QM q-bio.QM https://arxiv.org/abs/2510.12772 False False 2510.13017 Using transient encounter rates to quantify spatial patterns of home-range organization 2025-10-14 q-bio.PE q-bio.PE https://arxiv.org/abs/2510.13017 False False 2510.13883 Large Language Model Agents Enable Autonomous Design and Image Analysis of Microwell Microfluidics 2025-10-14 cs.MA;q-bio.NC q-bio.NC https://arxiv.org/abs/2510.13883 False False 2510.13886 Physics-Informed autoencoder for DSC-MRI Perfusion post-processing: application to glioma grading 2025-10-14 cs.AI;eess.IV;eess.SP;q-bio.QM q-bio.QM https://arxiv.org/abs/2510.13886 False False 2510.13896 GenCellAgent: Generalizable, Training-Free Cellular Image Segmentation via Large Language Model Agents 2025-10-14 cs.AI;cs.CV;cs.MA;q-bio.QM q-bio.QM https://arxiv.org/abs/2510.13896 False False 2510.13897 Dual-attention ResNet outperforms transformers in HER2 prediction on DCE-MRI 2025-10-14 cs.AI;q-bio.QM q-bio.QM https://arxiv.org/abs/2510.13897 False False 2510.12141 MAPS: Masked Attribution-based Probing of Strategies- A computational framework to align human and model explanations 2025-10-14 cs.CV;q-bio.NC q-bio.NC https://arxiv.org/abs/2510.12141 False False 2510.12384 Phenome-Wide Multi-Omics Integration Uncovers Distinct Archetypes of Human Aging 2025-10-14 cs.AI;q-bio.GN q-bio.GN https://arxiv.org/abs/2510.12384 False False 2510.13894 Bayes or Heisenberg: Who(se) Rules? 2025-10-14 cs.AI;cs.LG;physics.quant-ph;q-bio.NC q-bio.NC https://arxiv.org/abs/2510.13894 False False 2510.12617 Same model, better performance: the impact of shuffling on DNA Language Models benchmarking 2025-10-14 cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2510.12617 False False 2510.12776 Quantum Generative Modeling of Single-Cell transcriptomes: Capturing Gene-Gene and Cell-Cell Interactions 2025-10-14 cs.ET;physics.bio-ph;q-bio.GN;q-bio.QM q-bio.GN https://arxiv.org/abs/2510.12776 False False 2510.13018 Escaping Local Optima in the Waddington Landscape: A Two-Stage TRPO-PPO Approach for Single-Cell Perturbation Analysis 2025-10-14 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2510.13018 False False 2510.24736 RNAGenScape: Property-Guided, Optimized Generation of mRNA Sequences with Manifold Langevin Dynamics 2025-10-14 cs.LG;q-bio.BM;q-bio.QM q-bio.BM https://arxiv.org/abs/2510.24736 False False 2510.12577 ECMSim: A high-performance interactive web application for real-time spatiotemporal simulation of cardiac ECM signaling and diffusion 2025-10-14 cs.ET;physics.bio-ph;q-bio.MN;q-bio.QM q-bio.MN https://arxiv.org/abs/2510.12577 False False 2510.12976 Likelihood-free inference of phylogenetic tree posterior distributions 2025-10-14 q-bio.PE;q-bio.QM q-bio.PE https://arxiv.org/abs/2510.12976 False False 2510.12751 Non-linear associations of amyloid-$β$ with resting-state functional networks and their cognitive relevance in a large community-based cohort of cognitively normal older adults 2025-10-14 q-bio.NC q-bio.NC https://arxiv.org/abs/2510.12751 False False 2510.24736 RNAGenScape: Property-Guided, Optimized Generation of mRNA Sequences with Manifold Langevin Dynamics 2025-10-14 cs.LG;q-bio.BM;q-bio.QM q-bio.BM https://arxiv.org/abs/2510.24736 False False 2510.24736 RNAGenScape: Property-Guided, Optimized Generation of mRNA Sequences with Manifold Langevin Dynamics 2025-10-14 cs.LG;q-bio.BM;q-bio.QM q-bio.BM https://arxiv.org/abs/2510.24736 False False 2510.13896 GenCellAgent: Generalizable, Training-Free Cellular Image Segmentation via Large Language Model Agents 2025-10-14 cs.AI;cs.CV;cs.MA;q-bio.QM q-bio.QM https://arxiv.org/abs/2510.13896 False False 2510.13896 GenCellAgent: Generalizable, Training-Free Cellular Image Segmentation via Large Language Model Agents 2025-10-14 cs.AI;cs.CV;cs.MA;q-bio.QM q-bio.QM https://arxiv.org/abs/2510.13896 False False 2510.12577 ECMSim: A high-performance interactive web application for real-time spatiotemporal simulation of cardiac ECM signaling and diffusion 2025-10-14 cs.ET;physics.bio-ph;q-bio.MN;q-bio.QM q-bio.MN https://arxiv.org/abs/2510.12577 False False 2510.12577 ECMSim: A high-performance interactive web application for real-time spatiotemporal simulation of cardiac ECM signaling and diffusion 2025-10-14 cs.ET;physics.bio-ph;q-bio.MN;q-bio.QM q-bio.MN https://arxiv.org/abs/2510.12577 False False 2510.12614 Modeling Epidemics on Multiplex Networks: Epidemic Threshold and Basic Reproduction Number 2025-10-14 physics.AO;physics.soc-ph;physics.stat-mech;q-bio.PE q-bio.PE https://arxiv.org/abs/2510.12614 False False 2510.12614 Modeling Epidemics on Multiplex Networks: Epidemic Threshold and Basic Reproduction Number 2025-10-14 physics.AO;physics.soc-ph;physics.stat-mech;q-bio.PE q-bio.PE https://arxiv.org/abs/2510.12614 False False 2510.12776 Quantum Generative Modeling of Single-Cell transcriptomes: Capturing Gene-Gene and Cell-Cell Interactions 2025-10-14 cs.ET;physics.bio-ph;q-bio.GN;q-bio.QM q-bio.GN https://arxiv.org/abs/2510.12776 False False 2510.12776 Quantum Generative Modeling of Single-Cell transcriptomes: Capturing Gene-Gene and Cell-Cell Interactions 2025-10-14 cs.ET;physics.bio-ph;q-bio.GN;q-bio.QM q-bio.GN https://arxiv.org/abs/2510.12776 False False 2510.12976 Likelihood-free inference of phylogenetic tree posterior distributions 2025-10-14 q-bio.PE;q-bio.QM q-bio.PE https://arxiv.org/abs/2510.12976 False False 2510.12976 Likelihood-free inference of phylogenetic tree posterior distributions 2025-10-14 q-bio.PE;q-bio.QM q-bio.PE https://arxiv.org/abs/2510.12976 False False 2510.13897 Dual-attention ResNet outperforms transformers in HER2 prediction on DCE-MRI 2025-10-14 cs.AI;q-bio.QM q-bio.QM https://arxiv.org/abs/2510.13897 False False 2510.13897 Dual-attention ResNet outperforms transformers in HER2 prediction on DCE-MRI 2025-10-14 cs.AI;q-bio.QM q-bio.QM https://arxiv.org/abs/2510.13897 False False 2510.10950 ChloroScan: Recovering plastid genome bins from metagenomic data 2025-10-13 q-bio.GN q-bio.GN https://arxiv.org/abs/2510.10950 False False 2510.11162 Emergence of hybrid computational dynamics through reinforcement learning 2025-10-13 cs.LG;cs.NE;physics.AO;q-bio.NC q-bio.NC https://arxiv.org/abs/2510.11162 False False 2510.11188 Protein as a Second Language for LLMs 2025-10-13 cs.AI;cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2510.11188 False False 2510.11257 MIEO: encoding clinical data to enhance cardiovascular event prediction 2025-10-13 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2510.11257 False False 2510.11275 SeFEF: A Seizure Forecasting Evaluation Framework 2025-10-13 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2510.11275 False False 2510.11503 People use fast, flat goal-directed simulation to reason about novel problems 2025-10-13 cs.AI;cs.GT;q-bio.NC q-bio.NC https://arxiv.org/abs/2510.11503 False False 2510.11642 Competing forces of polarization and confinement generate cellular chirality in a minimal model 2025-10-13 q-bio.CB q-bio.CB https://arxiv.org/abs/2510.11642 False False 2510.11664 Proprioceptive Misestimation of Hand Speed 2025-10-13 q-bio.NC q-bio.NC https://arxiv.org/abs/2510.11664 False False 2510.11924 Inpainting the Neural Picture: Inferring Unrecorded Brain Area Dynamics from Multi-Animal Datasets 2025-10-13 q-bio.NC;stat.AP;stat.ML q-bio.NC https://arxiv.org/abs/2510.11924 False False 2510.11959 Genomic Influence of a Key Transcription Factor in Male Glandular Malignancy 2025-10-13 q-bio.QM q-bio.QM https://arxiv.org/abs/2510.11959 False False 2510.11982 Inhomogeneous continuous-time Markov chains to infer flexible time-varying evolutionary rates 2025-10-13 q-bio.PE;stat.ME q-bio.PE https://arxiv.org/abs/2510.11982 False False 2510.12840 ST2HE: A Cross-Platform Framework for Virtual Histology and Annotation of High-Resolution Spatial Transcriptomics Data 2025-10-13 q-bio.QM q-bio.QM https://arxiv.org/abs/2510.12840 False False 2510.12842 Protenix-Mini+: efficient structure prediction model with scalable pairformer 2025-10-13 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2510.12842 False False 2510.24732 Flows, straight but not so fast: Exploring the design space of Rectified Flows in Protein Design 2025-10-13 cs.AI;q-bio.BM q-bio.BM https://arxiv.org/abs/2510.24732 False False 2510.24733 Decoding non-invasive brain activity with novel deep-learning approaches 2025-10-13 cs.LG;eess.SP;q-bio.NC q-bio.NC https://arxiv.org/abs/2510.24733 False False 2510.15975 Generative AI for Biosciences: Emerging Threats and Roadmap to Biosecurity 2025-10-13 cs.CR;q-bio.BM q-bio.BM https://arxiv.org/abs/2510.15975 False False 2510.11670 Collagen and myocyte interplay in cardiac volume overload: a multi-constituent growth and remodeling framework 2025-10-13 cs.NA;math.NA;physics.med-ph;q-bio.TO q-bio.TO https://arxiv.org/abs/2510.11670 False False 2510.11642 Competing forces of polarization and adhesion generate directional migration bias in a minimal model 2025-10-13 q-bio.CB q-bio.CB https://arxiv.org/abs/2510.11642 False False 2510.11503 People use fast and flat simulation to reason about new games 2025-10-13 cs.AI;cs.GT;q-bio.NC q-bio.NC https://arxiv.org/abs/2510.11503 False False 2510.11503 People use fast and flat simulation to reason about new games 2025-10-13 cs.AI;cs.GT;q-bio.NC q-bio.NC https://arxiv.org/abs/2510.11503 False False 2510.10950 ChloroScan: Recovering plastid genome bins from metagenomic data 2025-10-13 q-bio.GN q-bio.GN https://arxiv.org/abs/2510.10950 False False 2510.10950 ChloroScan: Recovering plastid genome bins from metagenomic data 2025-10-13 q-bio.GN q-bio.GN https://arxiv.org/abs/2510.10950 False False 2510.10559 Evidence of Physiological Co-Modulation During Human-Animal Interaction: A Systematic Review 2025-10-12 q-bio.NC q-bio.NC https://arxiv.org/abs/2510.10559 False False 2510.10586 Compositional Symmetry as Compression: Lie Pseudogroup Structure in Algorithmic Agents 2025-10-12 cs.AI;cs.IT;cs.LG;math.IT;q-bio.NC q-bio.NC https://arxiv.org/abs/2510.10586 False False 2510.10614 A clustering algorithm for the single cell analysis of mixtures 2025-10-12 q-bio.QM;stat.AP q-bio.QM https://arxiv.org/abs/2510.10614 False False 2510.10733 Does Re-referencing Matter? Large Laplacian Filter Optimizes Single-Trial P300 BCI Performance 2025-10-12 q-bio.NC;q-bio.QM q-bio.NC https://arxiv.org/abs/2510.10733 False False 2510.10770 The Cost of Simplicity: How Reducing EEG Electrodes Affects Source Localization and BCI Accuracy 2025-10-12 q-bio.NC;q-bio.QM q-bio.NC https://arxiv.org/abs/2510.10770 False False 2510.10791 A compressed code for memory discrimination 2025-10-12 q-bio.NC q-bio.NC https://arxiv.org/abs/2510.10791 False False 2510.11750 PRISM: Enhancing Protein Inverse Folding through Fine-Grained Retrieval on Structure-Sequence Multimodal Representations 2025-10-12 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2510.11750 False False 2510.11752 Fast and Interpretable Protein Substructure Alignment via Optimal Transport 2025-10-12 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2510.11752 False False 2510.11756 Optimal Pair Matching Combined with Machine Learning Predicts a Significant Reduction in Myocardial Infarction Risk in African Americans following Omega-3 Fatty Acid Supplementation 2025-10-12 q-bio.QM;stat.AP q-bio.QM https://arxiv.org/abs/2510.11756 False False 2510.11750 PRISM: Enhancing Protein Inverse Folding through Fine-Grained Retrieval on Structure-Sequence Multimodal Representations 2025-10-12 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2510.11750 False False 2510.11752 Fast and Interpretable Protein Substructure Alignment via Optimal Transport 2025-10-12 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2510.11752 False False 2510.11752 Fast and Interpretable Protein Substructure Alignment via Optimal Transport 2025-10-12 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2510.11752 False False 2510.10251 Neural Hardware for the Language of Thought: New Rules for an Old Game 2025-10-11 q-bio.NC q-bio.NC https://arxiv.org/abs/2510.10251 False False 2510.10276 Lost in the Middle: An Emergent Property from Information Retrieval Demands in LLMs 2025-10-11 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2510.10276 False False 2510.10286 AI-Assisted Geometric Analysis of Cultured Neuronal Networks: Parallels with the Cosmic Web 2025-10-11 q-bio.NC q-bio.NC https://arxiv.org/abs/2510.10286 False False 2510.10289 Optimal monophasic, asymmetric electric field pulses for selective transcranial magnetic stimulation (TMS) with minimised power and coil heating 2025-10-11 cs.SY;eess.SY;q-bio.NC q-bio.NC https://arxiv.org/abs/2510.10289 False False 2510.10308 Artificial intelligence as a surrogate brain: Bridging neural dynamical models and data 2025-10-11 cs.NE;q-bio.NC q-bio.NC https://arxiv.org/abs/2510.10308 False False 2510.10300 The Algorithmic Regulator 2025-10-11 cs.AI;cs.CC;cs.IT;cs.SY;eess.SY;math.IT;q-bio.NC q-bio.NC https://arxiv.org/abs/2510.10300 False False 2510.13845 Embodiment in multimodal large language models 2025-10-11 q-bio.NC q-bio.NC https://arxiv.org/abs/2510.13845 False False 2510.20831 BACE: Behavior-Adaptive Connectivity Estimation for Interpretable Graphs of Neural Dynamics 2025-10-11 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2510.20831 False False 2510.13841 Identifying Autism-Related Neurobiomarkers Using Hybrid Deep Learning Models 2025-10-11 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2510.13841 False False 2510.10020 Calibrating Generative Models to Distributional Constraints 2025-10-11 cs.LG;q-bio.BM;stat.ML q-bio.BM https://arxiv.org/abs/2510.10020 False False 2510.11743 Mixture of Inverse Gaussians for Hemodynamic Transport (MIGHT) in Multiple-Input Multiple-Output Vascular Networks 2025-10-11 cs.ET;q-bio.QM q-bio.QM https://arxiv.org/abs/2510.11743 False False 2510.10259 Nonlinear Public Goods Game in Dynamical Environments 2025-10-11 math.DS;physics.AO;q-bio.PE q-bio.PE https://arxiv.org/abs/2510.10259 False False 2510.09951 Emergence of Spatial Representation in an Actor-Critic Agent with Hippocampus-Inspired Sequence Generator 2025-10-11 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2510.09951 False False 2510.10020 Calibrating Generative Models to Distributional Constraints 2025-10-11 cs.LG;q-bio.BM;stat.ML q-bio.BM https://arxiv.org/abs/2510.10020 False False 2510.10020 Calibrating Generative Models to Distributional Constraints 2025-10-11 cs.LG;q-bio.BM;stat.ML q-bio.BM https://arxiv.org/abs/2510.10020 False False 2510.08971 Communication System Design using Synthetic Photoisomerizable Azobenzene-Regulated K+(SPARK) channel 2025-10-10 q-bio.BM q-bio.BM https://arxiv.org/abs/2510.08971 False False 2510.09372 Design of DNA Strand Displacement Reactions 2025-10-10 q-bio.BM;q-bio.MN q-bio.BM https://arxiv.org/abs/2510.09372 False False 2510.09415 Estimating Brain Activity with High Spatial and Temporal Resolution using a Naturalistic MEG-fMRI Encoding Model 2025-10-10 cs.CL;cs.LG;cs.NE;q-bio.NC q-bio.NC https://arxiv.org/abs/2510.09415 False False 2510.09554 scellop: A Scalable Redesign of Cell Population Plots for Single-Cell Data 2025-10-10 cs.HC;q-bio.QM q-bio.QM https://arxiv.org/abs/2510.09554 False False 2510.09594 MODE: Learning compositional representations of complex systems with Mixtures Of Dynamical Experts 2025-10-10 cs.LG;q-bio.MN q-bio.MN https://arxiv.org/abs/2510.09594 False False 2510.09716 MS2toImg: A Framework for Direct Bioactivity Prediction from Raw LC-MS/MS Data 2025-10-10 q-bio.QM q-bio.QM https://arxiv.org/abs/2510.09716 False False 2510.09784 Combined Representation and Generation with Diffusive State Predictive Information Bottleneck 2025-10-10 cs.LG;physics.stat-mech;q-bio.QM q-bio.QM https://arxiv.org/abs/2510.09784 False False 2510.09828 Observer-Based Source Localization in Tree Infection Networks via Laplace Transforms 2025-10-10 cs.SI;math.PR;q-bio.PE;stat.ME q-bio.PE https://arxiv.org/abs/2510.09828 False False 2510.09903 An uncertainty-aware framework for data-efficient multi-view animal pose estimation 2025-10-10 cs.CV;q-bio.QM q-bio.QM https://arxiv.org/abs/2510.09903 False False 2510.09914 Augmenting generative models with biomedical knowledge graphs improves targeted drug discovery 2025-10-10 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2510.09914 False False 2510.09816 A mathematical theory for understanding when abstract representations emerge in neural networks 2025-10-10 math.OC;physics.bio-ph;physics.data-an;q-bio.NC;stat.ML q-bio.NC https://arxiv.org/abs/2510.09816 False False 2510.09837 Domain Knowledge Infused Conditional Generative Models for Accelerating Drug Discovery 2025-10-10 q-bio.QM q-bio.QM https://arxiv.org/abs/2510.09837 False False 2510.09451 Adaptive Decoding via Hierarchical Neural Information Gradients in Mouse Visual Tasks 2025-10-10 cs.NE;q-bio.NC q-bio.NC https://arxiv.org/abs/2510.09451 False False 2510.15947 WaveNet's Precision in EEG Classification 2025-10-10 cs.AI;cs.LG;eess.SP;q-bio.NC q-bio.NC https://arxiv.org/abs/2510.15947 False False 2510.09498 Unsupervised full-field Bayesian inference of orthotropic hyperelasticity from a single biaxial test: a myocardial case study 2025-10-10 cs.CE;cs.LG;q-bio.TO q-bio.TO https://arxiv.org/abs/2510.09498 False False 2510.08946 Physically Valid Biomolecular Interaction Modeling with Gauss-Seidel Projection 2025-10-10 cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2510.08946 False False 2510.09186 Alignment conditions of the human eye for few-photon vision experiments 2025-10-10 physics.optics;q-bio.QM q-bio.QM https://arxiv.org/abs/2510.09186 False False 2510.09186 Alignment conditions of the human eye for few-photon vision experiments 2025-10-10 physics.optics;q-bio.QM q-bio.QM https://arxiv.org/abs/2510.09186 False False 2510.09816 A mathematical theory for understanding when abstract representations emerge in neural networks 2025-10-10 math.OC;physics.bio-ph;physics.data-an;q-bio.NC;stat.ML q-bio.NC https://arxiv.org/abs/2510.09816 False False 2510.09498 Unsupervised full-field Bayesian inference of orthotropic hyperelasticity from a single biaxial test: a myocardial case study 2025-10-10 cs.CE;cs.LG;q-bio.TO q-bio.TO https://arxiv.org/abs/2510.09498 False False 2510.09498 Unsupervised full-field Bayesian inference of orthotropic hyperelasticity from a single biaxial test: a myocardial case study 2025-10-10 cs.CE;cs.LG;q-bio.TO q-bio.TO https://arxiv.org/abs/2510.09498 False False 2510.09498 Unsupervised full-field Bayesian inference of orthotropic hyperelasticity from a single biaxial test: a myocardial case study 2025-10-10 cs.CE;cs.LG;q-bio.TO q-bio.TO https://arxiv.org/abs/2510.09498 False False 2510.07660 Demographic synchrony increases the vulnerability of human societies to collapse 2025-10-09 q-bio.PE q-bio.PE https://arxiv.org/abs/2510.07660 False False 2510.07706 Large Language Models Meet Virtual Cell: A Survey 2025-10-09 cs.CE;cs.CL;cs.LG;q-bio.CB q-bio.CB https://arxiv.org/abs/2510.07706 False False 2510.07786 Weak Form Learning for Mean-Field Partial Differential Equations: an Application to Insect Movement 2025-10-09 cs.LG;math.DS;q-bio.PE q-bio.PE https://arxiv.org/abs/2510.07786 False False 2510.07797 Non-Kramers State Transitions in a Synthetic Toggle Switch Biosystem 2025-10-09 physics.stat-mech;q-bio.CB;q-bio.MN q-bio.CB https://arxiv.org/abs/2510.07797 False False 2510.07921 Inhomogeneous branching trees with symmetric and asymmetric offspring and their genealogies 2025-10-09 math.PR;q-bio.PE q-bio.PE https://arxiv.org/abs/2510.07921 False False 2510.07946 Three-state coevolutionary game dynamics with environmental feedback 2025-10-09 physics.AO;q-bio.PE q-bio.PE https://arxiv.org/abs/2510.07946 False False 2510.07956 State-dependent brain responsiveness, from local circuits to the whole brain 2025-10-09 q-bio.NC q-bio.NC https://arxiv.org/abs/2510.07956 False False 2510.07964 PRESCRIBE: Predicting Single-Cell Responses with Bayesian Estimation 2025-10-09 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2510.07964 False False 2510.08082 Optimizing BCI Rehabilitation Protocols for Stroke: Exploring Task Design and Training Duration 2025-10-09 cs.SY;eess.SP;eess.SY;q-bio.NC q-bio.NC https://arxiv.org/abs/2510.08082 False False 2510.08151 Evaluating multi-season occupancy models with autocorrelation fitted to heterogeneous datasets 2025-10-09 q-bio.PE;q-bio.QM;stat.AP q-bio.PE https://arxiv.org/abs/2510.08151 False False 2510.07657 Upconverting microgauges reveal intraluminal force dynamics in vivo 2025-10-09 q-bio.QM;q-bio.TO q-bio.QM https://arxiv.org/abs/2510.07657 False False 2510.08407 Biology-driven assessment of deep learning super-resolution imaging of the porosity network in dentin 2025-10-09 cs.CV;cs.LG;q-bio.TO q-bio.TO https://arxiv.org/abs/2510.08407 False False 2510.08410 Gradual assembly of metabolism at a phosphorylating hydrothermal vent 2025-10-09 q-bio.PE q-bio.PE https://arxiv.org/abs/2510.08410 False False 2510.08642 Modeling Predator-Prey Dynamics with Stochastic Differential Equations: Patterns of Collective Hunting and Nonlinear Predation Effects 2025-10-09 math.DS;q-bio.PE q-bio.PE https://arxiv.org/abs/2510.08642 False False 2510.08655 Knowledge Graph Sparsification for GNN-based Rare Disease Diagnosis 2025-10-09 cs.AI;cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2510.08655 False False 2510.08703 Decoding Positive Selection in Mycobacterium tuberculosis with Phylogeny-Guided Graph Attention Models 2025-10-09 cs.LG;q-bio.PE q-bio.PE https://arxiv.org/abs/2510.08703 False False 2510.08736 Neural correlates of perceptual consciousness from within: a narrative review of human intracranial research 2025-10-09 q-bio.NC q-bio.NC https://arxiv.org/abs/2510.08736 False False 2510.08833 Symbiosis emergence and abandonment in nature: a coordination game approach 2025-10-09 q-bio.PE q-bio.PE https://arxiv.org/abs/2510.08833 False False 2510.09702 Interval-Censored Survival Analysis of Grapevine Phenology: Thermal Controls on Flowering and Fruit Ripening 2025-10-09 q-bio.QM;stat.AP;stat.CO q-bio.QM https://arxiv.org/abs/2510.09702 False False 2510.08324 Quantification of protein homodimer affinity using native mass spectrometry 2025-10-09 q-bio.BM;q-bio.QM q-bio.BM https://arxiv.org/abs/2510.08324 False False 2510.08436 Spike-frequency and h-current based adaptation are dynamically equivalent in a Wilson-Cowan field model 2025-10-09 physics.AO;q-bio.NC q-bio.NC https://arxiv.org/abs/2510.08436 False False 2510.13826 Towards Neurocognitive-Inspired Intelligence: From AI's Structural Mimicry to Human-Like Functional Cognition 2025-10-09 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2510.13826 False False 2510.07653 Large-scale spatial variable gene atlas for spatial transcriptomics 2025-10-09 cs.DB;q-bio.GN;q-bio.TO;stat.AP;stat.CO q-bio.GN https://arxiv.org/abs/2510.07653 False False 2510.17841 Information Capacity of EEG: Theoretical and Computational Limits of Recoverable Neural Information 2025-10-09 cs.IT;math.IT;q-bio.NC q-bio.NC https://arxiv.org/abs/2510.17841 False False 2510.08379 Effect of modeling subject-specific cortical folds on brain injury risk prediction under blunt impact loading 2025-10-09 q-bio.TO q-bio.TO https://arxiv.org/abs/2510.08379 False False 2510.08736 Neural correlates of perceptual consciousness from within: a narrative review of human intracranial research 2025-10-09 q-bio.NC q-bio.NC https://arxiv.org/abs/2510.08736 False False 2510.08410 Intermediate stages in the origin of metabolism at a phosphorylating hydrothermal vent 2025-10-09 q-bio.PE q-bio.PE https://arxiv.org/abs/2510.08410 False False 2510.08410 Intermediate stages in the origin of metabolism at a phosphorylating hydrothermal vent 2025-10-09 q-bio.PE q-bio.PE https://arxiv.org/abs/2510.08410 False False 2510.08410 Intermediate stages in the origin of metabolism at a phosphorylating hydrothermal vent 2025-10-09 q-bio.PE q-bio.PE https://arxiv.org/abs/2510.08410 False False 2510.07797 Cell State Transitions Beyond the Small-Noise Limit 2025-10-09 physics.stat-mech;q-bio.CB;q-bio.MN q-bio.CB https://arxiv.org/abs/2510.07797 False False 2510.07797 Cell State Transitions Beyond the Small-Noise Limit 2025-10-09 physics.stat-mech;q-bio.CB;q-bio.MN q-bio.CB https://arxiv.org/abs/2510.07797 False False 2510.07797 Cell State Transitions Beyond the Small-Noise Limit 2025-10-09 physics.stat-mech;q-bio.CB;q-bio.MN q-bio.CB https://arxiv.org/abs/2510.07797 False False 2510.08436 Spike-frequency and h-current based adaptation are dynamically equivalent in a Wilson-Cowan field model 2025-10-09 physics.AO;q-bio.NC q-bio.NC https://arxiv.org/abs/2510.08436 False False 2510.08436 Spike-frequency and h-current based adaptation are dynamically equivalent in a Wilson-Cowan field model 2025-10-09 physics.AO;q-bio.NC q-bio.NC https://arxiv.org/abs/2510.08436 False False 2510.08151 Evaluating multi-season occupancy models with autocorrelation fitted to heterogeneous datasets 2025-10-09 q-bio.PE;q-bio.QM;stat.AP q-bio.PE https://arxiv.org/abs/2510.08151 False False 2510.08151 Evaluating multi-season occupancy models with autocorrelation fitted to heterogeneous datasets 2025-10-09 q-bio.PE;q-bio.QM;stat.AP q-bio.PE https://arxiv.org/abs/2510.08151 False False 2510.07956 State-dependent brain responsiveness, from local circuits to the whole brain 2025-10-09 q-bio.NC q-bio.NC https://arxiv.org/abs/2510.07956 False False 2510.07956 State-dependent brain responsiveness, from local circuits to the whole brain 2025-10-09 q-bio.NC q-bio.NC https://arxiv.org/abs/2510.07956 False False 2510.06554 UniOTalign: A Global Matching Framework for Protein Alignment via Optimal Transport 2025-10-08 q-bio.QM q-bio.QM https://arxiv.org/abs/2510.06554 False False 2510.06671 Utilizing Information Theoretic Approach to Study Cochlear Neural Degeneration 2025-10-08 cs.IT;eess.AS;math.IT;q-bio.NC q-bio.NC https://arxiv.org/abs/2510.06671 False False 2510.06914 Gradient of White Matter Functional Variability via fALFF Differential Identifiability 2025-10-08 q-bio.NC q-bio.NC https://arxiv.org/abs/2510.06914 False False 2510.07140 Quantifying spike train synchrony and directionality: Measures and Applications 2025-10-08 physics.data-an;q-bio.NC q-bio.NC https://arxiv.org/abs/2510.07140 False False 2510.07255 ARGscape: A modular, interactive tool for manipulation of spatiotemporal ancestral recombination graphs 2025-10-08 q-bio.PE q-bio.PE https://arxiv.org/abs/2510.07255 False False 2510.07265 Entropy and diffusion characterize mutation accumulation and biological information loss 2025-10-08 q-bio.PE q-bio.PE https://arxiv.org/abs/2510.07265 False False 2510.07415 Autoencoding Coordinate Sequences from Psychophysiologic Signals 2025-10-08 eess.SP;q-bio.NC q-bio.NC https://arxiv.org/abs/2510.07415 False False 2510.07576 Monkey Perceptogram: Reconstructing Visual Representation and Presumptive Neural Preference from Monkey Multi-electrode Arrays 2025-10-08 q-bio.NC q-bio.NC https://arxiv.org/abs/2510.07576 False False 2510.09678 Bigger is Faster in the Adaptive Immune Response 2025-10-08 physics.bio-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2510.09678 False False 2510.11726 scPPDM: A Diffusion Model for Single-Cell Drug-Response Prediction 2025-10-08 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2510.11726 False False 2510.21748 Automated Tinnitus Detection Through Dual-Modality Neuroimaging: EEG Microstate Analysis and Resting-State fMRI Classification Using Deep Learning 2025-10-08 cs.SY;eess.SP;eess.SY;q-bio.NC q-bio.NC https://arxiv.org/abs/2510.21748 False False 2510.15939 Hallucinations in AlphaFold3 for Intrinsically Disordered Proteins with disorder in Biological Process Residues 2025-10-08 q-bio.QM q-bio.QM https://arxiv.org/abs/2510.15939 False False 2510.07286 Evolutionary Profiles for Protein Fitness Prediction 2025-10-08 cs.AI;cs.LG;q-bio.BM;q-bio.QM q-bio.BM https://arxiv.org/abs/2510.07286 False False 2510.07072 A model of the human cornea as a hydrated, fluid-saturated medium 2025-10-08 q-bio.TO q-bio.TO https://arxiv.org/abs/2510.07072 False False 2510.09668 A Hybrid Computational Intelligence Framework with Metaheuristic Optimization for Drug-Drug Interaction Prediction 2025-10-08 cs.AI;cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2510.09668 False False 2510.06584 Improving Artifact Robustness for CT Deep Learning Models Without Labeled Artifact Images via Domain Adaptation 2025-10-08 cs.CV;q-bio.TO q-bio.TO https://arxiv.org/abs/2510.06584 False False 2510.06578 A geometric feature tracking approach for noninvasive patient specific estimation of leaflet strain from 3D images of heart valves 2025-10-08 q-bio.QM q-bio.QM https://arxiv.org/abs/2510.06578 False False 2510.07265 Entropy and diffusion characterize mutation accumulation and biological information loss 2025-10-08 q-bio.PE q-bio.PE https://arxiv.org/abs/2510.07265 False False 2510.07265 Entropy and diffusion characterize mutation accumulation and biological information loss 2025-10-08 q-bio.PE q-bio.PE https://arxiv.org/abs/2510.07265 False False 2510.07286 Evolutionary Profiles for Protein Fitness Prediction 2025-10-08 cs.AI;cs.LG;q-bio.BM;q-bio.QM q-bio.BM https://arxiv.org/abs/2510.07286 False False 2510.07286 Evolutionary Profiles for Protein Fitness Prediction 2025-10-08 cs.AI;cs.LG;q-bio.BM;q-bio.QM q-bio.BM https://arxiv.org/abs/2510.07286 False False 2510.07140 Quantifying spike train synchrony and directionality: Measures and Applications 2025-10-08 physics.data-an;q-bio.NC q-bio.NC https://arxiv.org/abs/2510.07140 False False 2510.07140 Quantifying spike train synchrony and directionality: Measures and Applications 2025-10-08 physics.data-an;q-bio.NC q-bio.NC https://arxiv.org/abs/2510.07140 False False 2510.05521 Evolution of social behaviors in noisy environments 2025-10-07 physics.soc-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2510.05521 False False 2510.05626 Paraplume: A fast and accurate paratope prediction method provides insights into repertoire-scale binding dynamics 2025-10-07 q-bio.BM q-bio.BM https://arxiv.org/abs/2510.05626 False False 2510.05721 Daily Profile of COVID-19 Infections in Germany, throughout the Pandemic 2025-10-07 q-bio.PE q-bio.PE https://arxiv.org/abs/2510.05721 False False 2510.05747 Physicochemically Informed Dual-Conditioned Generative Model of T-Cell Receptor Variable Regions for Cellular Therapy 2025-10-07 cs.CE;q-bio.BM q-bio.BM https://arxiv.org/abs/2510.05747 False False 2510.05777 DP-SNP-TIHMM: Differentially Private, Time-Inhomogeneous Hidden Markov Models for Synthesizing Genome-Wide Association Datasets 2025-10-07 cs.CR;cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2510.05777 False False 2510.05911 Weighted Food Webs Make Computing Phylogenetic Diversity So Much Harder 2025-10-07 cs.DM;q-bio.PE q-bio.PE https://arxiv.org/abs/2510.05911 False False 2510.05920 Deciphering the Role of Acetate in Metabolic Adaptation and Osimertinib Resistance in Non-Small Cell Lung Cancer 2025-10-07 q-bio.CB;q-bio.SC q-bio.CB https://arxiv.org/abs/2510.05920 False False 2510.06011 How many more is different? 2025-10-07 cs.DC;physics.AO;physics.stat-mech;q-bio.PE q-bio.PE https://arxiv.org/abs/2510.06011 False False 2510.06111 An additional food driven biological control patch model, incorporating generalized competition 2025-10-07 q-bio.PE q-bio.PE https://arxiv.org/abs/2510.06111 False False 2510.05886 acia-workflows: Automated Single-cell Imaging Analysis for Scalable and Deep Learning-based Live-cell Imaging Analysis Workflows 2025-10-07 cs.CV;q-bio.QM q-bio.QM https://arxiv.org/abs/2510.05886 False False 2510.06290 Soft-Evidence Fused Graph Neural Network for Cancer Driver Gene Identification across Multi-View Biological Graphs 2025-10-07 cs.AI;cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2510.06290 False False 2510.06297 Consciousness As Entropy Reduction (Short Version) 2025-10-07 math.LO;q-bio.NC q-bio.NC https://arxiv.org/abs/2510.06297 False False 2510.06344 Retrieving the structure of probabilistic sequences from EEG data during the goalkeeper game 2025-10-07 math.PR;q-bio.NC q-bio.NC https://arxiv.org/abs/2510.06344 False False 2510.06361 Diffusion-Guided Renormalization of Neural Systems via Tensor Networks 2025-10-07 cs.LG;physics.stat-mech;q-bio.NC q-bio.NC https://arxiv.org/abs/2510.06361 False False 2510.07337 Decoding the dark proteome: Deep learning-enabled discovery of druggable enzymes in Wuchereria bancrofti 2025-10-07 cs.LG;q-bio.MN;q-bio.QM q-bio.MN https://arxiv.org/abs/2510.07337 False False 2510.07345 Mitigating Surgical Data Imbalance with Dual-Prediction Video Diffusion Model 2025-10-07 cs.AI;eess.IV;q-bio.QM q-bio.QM https://arxiv.org/abs/2510.07345 False False 2510.07347 Learning from Limited Multi-Phase CT: Dual-Branch Prototype-Guided Framework for Early Recurrence Prediction in HCC 2025-10-07 eess.IV;q-bio.QM q-bio.QM https://arxiv.org/abs/2510.07347 False False 2510.06080 Mechanistic-statistical inference of mosquito dynamics from mark-release-recapture data 2025-10-07 math.AP;q-bio.PE q-bio.PE https://arxiv.org/abs/2510.06080 False False 2510.05815 Multiscale dynamical characterization of cortical brain states: from synchrony to asynchrony 2025-10-07 q-bio.NC q-bio.NC https://arxiv.org/abs/2510.05815 False False 2510.07342 Beyond Grid-Locked Voxels: Neural Response Functions for Continuous Brain Encoding 2025-10-07 cs.LG;eess.IV;q-bio.NC q-bio.NC https://arxiv.org/abs/2510.07342 False False 2510.06091 Learning Mixtures of Linear Dynamical Systems via Hybrid Tensor-EM Method 2025-10-07 cs.LG;cs.SY;eess.SY;q-bio.NC;stat.ML q-bio.NC https://arxiv.org/abs/2510.06091 False False 2510.04408 Twist dominates bending in the liquid crystal organization of bacteriophage DNA 2025-10-06 physics.soft;q-bio.BM q-bio.BM https://arxiv.org/abs/2510.04408 False False 2510.04578 Gonosomic algebras: an extension of gonosomal algebras 2025-10-06 q-bio.PE q-bio.PE https://arxiv.org/abs/2510.04578 False False 2510.04757 ModernBERT + ColBERT: Enhancing biomedical RAG through an advanced re-ranking retriever 2025-10-06 cs.CL;q-bio.QM q-bio.QM https://arxiv.org/abs/2510.04757 False False 2510.04806 Ecosystem Recovery to Historical Targets Becomes Unattainable Under Modelled Fishing and Climate in the Barents Sea 2025-10-06 q-bio.PE;stat.AP q-bio.PE https://arxiv.org/abs/2510.04806 False False 2510.04878 Flow-Matching Based Refiner for Molecular Conformer Generation 2025-10-06 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2510.04878 False False 2510.04897 Impact of Force Field Polarization on Correlated Motions of Proteins 2025-10-06 q-bio.BM;q-bio.QM q-bio.BM https://arxiv.org/abs/2510.04897 False False 2510.04969 Bridging Clinical Narratives and ACR Appropriateness Guidelines: A Multi-Agent RAG System for Medical Imaging Decisions 2025-10-06 q-bio.QM q-bio.QM https://arxiv.org/abs/2510.04969 False False 2510.04984 What your brain activity says about you: A review of neuropsychiatric disorders identified in resting-state and sleep EEG data 2025-10-06 cs.CR;cs.CY;cs.NE;q-bio.NC q-bio.NC https://arxiv.org/abs/2510.04984 False False 2510.05083 Robust multicellular programs dissect the complex tumor microenvironment and track disease progression in colorectal adenocarcinomas 2025-10-06 q-bio.MN;q-bio.QM;q-bio.TO q-bio.MN https://arxiv.org/abs/2510.05083 False False 2510.05098 On graphical domination for threshold-linear networks with recurrent excitation and global inhibition 2025-10-06 q-bio.NC q-bio.NC https://arxiv.org/abs/2510.05098 False False 2510.05194 Reinforcement Learning for Clinical Reasoning: Aligning LLMs with ACR Imaging Appropriateness Criteria 2025-10-06 q-bio.QM q-bio.QM https://arxiv.org/abs/2510.05194 False False 2510.05325 Dynamic Functional Connectivity Features for Brain State Classification: Insights from the Human Connectome Project 2025-10-06 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2510.05325 False False 2510.05355 Reducing Latency and Noise in PPG-Based SpO2 Measurements: A Kalman Filtering Approach Towards Acute Hypoxia Detection 2025-10-06 q-bio.QM q-bio.QM https://arxiv.org/abs/2510.05355 False False 2510.05433 Physics-Informed Machine Learning in Biomedical Science and Engineering 2025-10-06 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2510.05433 False False 2510.21742 Statistics of correlations in nonlinear recurrent neural networks 2025-10-06 cs.NE;physics.bio-ph;physics.dis-nn;physics.hep-th;q-bio.NC q-bio.NC https://arxiv.org/abs/2510.21742 False False 2510.04859 Global-to-local image quality assessment in optical microscopy via fast and robust deep learning predictions 2025-10-06 cs.CV;physics.data-an;q-bio.QM q-bio.QM https://arxiv.org/abs/2510.04859 False False 2510.05383 Mathematical Analysis for a Class of Stochastic Copolymerization Processes 2025-10-06 math.MP;math.PR;physics.math-ph;q-bio.MN;q-bio.QM q-bio.MN https://arxiv.org/abs/2510.05383 False False 2510.04698 The Bayesian Origin of the Probability Weighting Function in Human Representation of Probabilities 2025-10-06 cs.AI;econ.TH;q-bio.NC q-bio.NC https://arxiv.org/abs/2510.04698 False False 2510.05193 Harmonic fields and the mechanical response of a cellular monolayer to ablation 2025-10-06 q-bio.QM q-bio.QM https://arxiv.org/abs/2510.05193 False False 2510.04501 Non-Monotone Traveling Waves of the Weak Competition Lotka-Volterra System 2025-10-06 math.AP;math.DS;q-bio.PE q-bio.PE https://arxiv.org/abs/2510.04501 False False 2510.04501 Non-Monotone Traveling Waves of the Weak Competition Lotka-Volterra System 2025-10-06 math.AP;math.DS;q-bio.PE q-bio.PE https://arxiv.org/abs/2510.04501 False False 2510.21742 Statistics of correlations in nonlinear recurrent neural networks 2025-10-06 cs.NE;physics.bio-ph;physics.dis-nn;physics.hep-th;q-bio.NC q-bio.NC https://arxiv.org/abs/2510.21742 False False 2510.21742 Statistics of correlations in nonlinear recurrent neural networks 2025-10-06 cs.NE;physics.bio-ph;physics.dis-nn;physics.hep-th;q-bio.NC q-bio.NC https://arxiv.org/abs/2510.21742 False False 2510.04578 Gonosomic algebras: an extension of gonosomal algebras 2025-10-06 q-bio.PE q-bio.PE https://arxiv.org/abs/2510.04578 False False 2510.04578 Gonosomic algebras: an extension of gonosomal algebras 2025-10-06 q-bio.PE q-bio.PE https://arxiv.org/abs/2510.04578 False False 2510.04698 The Bayesian Origin of the Probability Weighting Function in Human Representation of Probabilities 2025-10-06 cs.AI;econ.TH;q-bio.NC q-bio.NC https://arxiv.org/abs/2510.04698 False False 2510.04698 The Bayesian Origin of the Probability Weighting Function in Human Representation of Probabilities 2025-10-06 cs.AI;econ.TH;q-bio.NC q-bio.NC https://arxiv.org/abs/2510.04698 False False 2510.21742 Statistics of correlations in nonlinear recurrent neural networks 2025-10-06 cs.NE;physics.bio-ph;physics.dis-nn;physics.hep-th;q-bio.NC q-bio.NC https://arxiv.org/abs/2510.21742 False False 2510.21742 Statistics of correlations in nonlinear recurrent neural networks 2025-10-06 cs.NE;physics.bio-ph;physics.dis-nn;physics.hep-th;q-bio.NC q-bio.NC https://arxiv.org/abs/2510.21742 False False 2510.21742 Statistics of correlations in nonlinear recurrent neural networks 2025-10-06 cs.NE;physics.bio-ph;physics.dis-nn;physics.hep-th;q-bio.NC q-bio.NC https://arxiv.org/abs/2510.21742 False False 2510.21742 Statistics of correlations in nonlinear recurrent neural networks 2025-10-06 cs.NE;physics.bio-ph;physics.dis-nn;physics.hep-th;q-bio.NC q-bio.NC https://arxiv.org/abs/2510.21742 False False 2510.04084 Bridging integrated information theory and the free-energy principle in living neuronal networks 2025-10-05 q-bio.NC q-bio.NC https://arxiv.org/abs/2510.04084 False False 2510.04101 Mapping gene expression dynamics to developmental phenotypes with information entropy analysis 2025-10-05 physics.bio-ph;q-bio.QM q-bio.QM https://arxiv.org/abs/2510.04101 False False 2510.04110 Simultaneously Determining Regional Heterogeneity and Connection Directionality from Neural Activity and Symmetric Connection 2025-10-05 physics.bio-ph;q-bio.NC q-bio.NC https://arxiv.org/abs/2510.04110 False False 2510.04176 Relief of EGFR/FOS-downregulated miR-103a by loganin alleviates NF-kappaB-triggered inflammation and gut barrier disruption in colitis 2025-10-05 q-bio.BM;q-bio.MN q-bio.BM https://arxiv.org/abs/2510.04176 False False 2510.04193 Inverse statistics of active matter trajectories to distinguish interaction kernel anisotropy from emergent correlations 2025-10-05 q-bio.QM q-bio.QM https://arxiv.org/abs/2510.04193 False False 2510.05183 Aneurysm Growth Time Series Reconstruction Using Physics-informed Autoencoder 2025-10-05 cs.LG;q-bio.QM;stat.AP;stat.ML q-bio.QM https://arxiv.org/abs/2510.05183 False False 2510.04391 Offline World Models as Imagination Networks in Cognitive Agents 2025-10-05 cs.AI;cs.CL;cs.SI;q-bio.NC q-bio.NC https://arxiv.org/abs/2510.04391 False False 2510.04377 TCR-EML: Explainable Model Layers for TCR-pMHC Prediction 2025-10-05 cs.CE;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2510.04377 False False 2510.04391 Psychological Imagination Networks Show Cross-Population Centrality and Clustering Alignment in Humans That Large Language Models Fail to Replicate 2025-10-05 cs.AI;cs.CL;cs.SI;q-bio.NC q-bio.NC https://arxiv.org/abs/2510.04391 False False 2510.04391 Psychological Imagination Networks Show Cross-Population Centrality and Clustering Alignment in Humans That Large Language Models Fail to Replicate 2025-10-05 cs.AI;cs.CL;cs.SI;q-bio.NC q-bio.NC https://arxiv.org/abs/2510.04391 False False 2510.04084 Bridging integrated information theory and the free-energy principle in living neuronal networks 2025-10-05 q-bio.NC q-bio.NC https://arxiv.org/abs/2510.04084 False False 2510.04084 Bridging integrated information theory and the free-energy principle in living neuronal networks 2025-10-05 q-bio.NC q-bio.NC https://arxiv.org/abs/2510.04084 False False 2510.03629 RawBench: A Comprehensive Benchmarking Framework for Raw Nanopore Signal Analysis Techniques 2025-10-04 q-bio.GN;q-bio.QM q-bio.GN https://arxiv.org/abs/2510.03629 False False 2510.03684 Model-Guided Microstimulation Steers Primate Visual Behavior 2025-10-04 cs.CV;q-bio.NC q-bio.NC https://arxiv.org/abs/2510.03684 False False 2510.03699 Dissecting Larval Zebrafish Hunting using Deep Reinforcement Learning Trained RNN Agents 2025-10-04 cs.AI;cs.LG;cs.NE;cs.SY;eess.SY;q-bio.NC q-bio.NC https://arxiv.org/abs/2510.03699 False False 2510.03718 Scarce Data, Noisy Inferences, and Overfitting: The Hidden Flaws in Ecological Dynamics Modelling 2025-10-04 physics.bio-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2510.03718 False False 2510.03741 Désentrelacement Fréquentiel Doux pour les Codecs Audio Neuronaux 2025-10-04 cs.SD;eess.AS;q-bio.NC q-bio.NC https://arxiv.org/abs/2510.03741 False False 2510.03811 Curriculum-Augmented GFlowNets For mRNA Sequence Generation 2025-10-04 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2510.03811 False False 2510.03881 Intrinsic cause-effect power: the tradeoff between differentiation and specification 2025-10-04 q-bio.NC q-bio.NC https://arxiv.org/abs/2510.03881 False False 2510.03958 Scale dependence in hidden Markov models for animal movement 2025-10-04 q-bio.QM;stat.AP q-bio.QM https://arxiv.org/abs/2510.03958 False False 2510.05161 Heterogeneous immune recovery after viral response through a dynamical model of feedback-driven persistence and clearance 2025-10-04 q-bio.QM q-bio.QM https://arxiv.org/abs/2510.05161 False False 2510.17837 Dynamic threshold curves and response precision in forced excitable systems 2025-10-04 math.DS;q-bio.NC q-bio.NC https://arxiv.org/abs/2510.17837 False False 2510.03621 A flux-based approach for analyzing the disguised toric locus of reaction networks 2025-10-04 math.DS;q-bio.MN q-bio.MN https://arxiv.org/abs/2510.03621 False False 2510.03881 Intrinsic cause-effect power: the tradeoff between differentiation and specification 2025-10-04 q-bio.NC q-bio.NC https://arxiv.org/abs/2510.03881 False False 2510.03881 Intrinsic cause-effect power: the tradeoff between differentiation and specification 2025-10-04 q-bio.NC q-bio.NC https://arxiv.org/abs/2510.03881 False False 2510.03699 Dissecting Larval Zebrafish Hunting using Deep Reinforcement Learning Trained RNN Agents 2025-10-04 cs.AI;cs.LG;cs.NE;cs.SY;eess.SY;q-bio.NC q-bio.NC https://arxiv.org/abs/2510.03699 False False 2510.03699 Dissecting Larval Zebrafish Hunting using Deep Reinforcement Learning Trained RNN Agents 2025-10-04 cs.AI;cs.LG;cs.NE;cs.SY;eess.SY;q-bio.NC q-bio.NC https://arxiv.org/abs/2510.03699 False False 2510.02734 SAE-RNA: A Sparse Autoencoder Model for Interpreting RNA Language Model Representations 2025-10-03 cs.AI;q-bio.BM;q-bio.GN q-bio.BM https://arxiv.org/abs/2510.02734 False False 2510.02824 Pyk2 plays a critical role in synaptic dysfunction during the early stages of Alzheimer's disease 2025-10-03 q-bio.NC q-bio.NC https://arxiv.org/abs/2510.02824 False False 2510.02829 The land use-climate change-biodiversity nexus in European islands stakeholders 2025-10-03 cs.LG;q-bio.PE q-bio.PE https://arxiv.org/abs/2510.02829 False False 2510.02979 Towards Electrophysiological and Histological Mapping of Upper Limb Nerves in Pigs Using Epineural Stimulation 2025-10-03 eess.SP;q-bio.QM q-bio.QM https://arxiv.org/abs/2510.02979 False False 2510.03076 Selective disruption of reach-related saccade timing following a middle-cerebral artery stroke 2025-10-03 q-bio.NC q-bio.NC https://arxiv.org/abs/2510.03076 False False 2510.03155 Stimulus-Voltage-Based Prediction of Action Potential Onset Timing: Classical vs. Quantum-Inspired Approaches 2025-10-03 cs.AI;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2510.03155 False False 2510.03158 Evolution du Principe d'Exclusion Compétitive : Le rôle des mathématiques 2025-10-03 math.DS;q-bio.PE q-bio.PE https://arxiv.org/abs/2510.03158 False False 2510.03359 Predicting cell-specific gene expression profile and knockout impact through deep learning 2025-10-03 q-bio.GN q-bio.GN https://arxiv.org/abs/2510.03359 False False 2510.03573 The Effects of Time Since Fire On Bird Community Composition in Chaparral Ecosystems Across Los Angeles County 2025-10-03 q-bio.PE q-bio.PE https://arxiv.org/abs/2510.03573 False False 2510.06252 Dream2Image : An Open Multimodal EEG Dataset for Decoding and Visualizing Dreams with Artificial Intelligence 2025-10-03 cs.AI;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2510.06252 False False 2510.02853 The Principle of Isomorphism: A Theory of Population Activity in Grid Cells and Beyond 2025-10-03 q-bio.NC q-bio.NC https://arxiv.org/abs/2510.02853 False False 2510.17833 Brain-Language Model Alignment: Insights into the Platonic Hypothesis and Intermediate-Layer Advantage 2025-10-03 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2510.17833 False False 2510.02812 Dynamics of memory B cells and plasmablasts in healthy individuals 2025-10-03 q-bio.PE q-bio.PE https://arxiv.org/abs/2510.02812 False False 2510.03370 InstructPLM-mu: 1-Hour Fine-Tuning of ESM2 Beats ESM3 in Protein Mutation Predictions 2025-10-03 cs.AI;cs.CE;q-bio.QM q-bio.QM https://arxiv.org/abs/2510.03370 False False 2510.02903 Learning Explicit Single-Cell Dynamics Using ODE Representations 2025-10-03 cs.LG;q-bio.CB q-bio.CB https://arxiv.org/abs/2510.02903 False False 2510.02824 Pyk2 plays a critical role in synaptic dysfunction during the early stages of Alzheimer's disease 2025-10-03 q-bio.NC q-bio.NC https://arxiv.org/abs/2510.02824 False False 2510.02824 Pyk2 plays a critical role in synaptic dysfunction during the early stages of Alzheimer's disease 2025-10-03 q-bio.NC q-bio.NC https://arxiv.org/abs/2510.02824 False False 2510.02734 SAE-RNA: A Sparse Autoencoder Model for Interpreting RNA Language Model Representations 2025-10-03 cs.AI;q-bio.BM;q-bio.GN q-bio.BM https://arxiv.org/abs/2510.02734 False False 2510.02734 SAE-RNA: A Sparse Autoencoder Model for Interpreting RNA Language Model Representations 2025-10-03 cs.AI;q-bio.BM;q-bio.GN q-bio.BM https://arxiv.org/abs/2510.02734 False False 2510.02853 The Principle of Isomorphism: A Theory of Population Activity in Grid Cells and Beyond 2025-10-03 q-bio.NC q-bio.NC https://arxiv.org/abs/2510.02853 False False 2510.02853 The Principle of Isomorphism: A Theory of Population Activity in Grid Cells and Beyond 2025-10-03 q-bio.NC q-bio.NC https://arxiv.org/abs/2510.02853 False False 2510.01570 Bi-Virus SIS Epidemic Propagation under Mutation and Game-theoretic Protection Adoption 2025-10-02 cs.SY;eess.SY;q-bio.PE q-bio.PE https://arxiv.org/abs/2510.01570 False False 2510.01571 From Supervision to Exploration: What Does Protein Language Model Learn During Reinforcement Learning? 2025-10-02 cs.AI;cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2510.01571 False False 2510.01590 On the Geographic Spread of Chikungunya between Brazil and Florida: A Multi-patch Model with Time Delay 2025-10-02 q-bio.PE q-bio.PE https://arxiv.org/abs/2510.01590 False False 2510.01632 BioBlobs: Differentiable Graph Partitioning for Protein Representation Learning 2025-10-02 cs.AI;q-bio.BM q-bio.BM https://arxiv.org/abs/2510.01632 False False 2510.01666 Median2Median: Zero-shot Suppression of Structured Noise in Images 2025-10-02 cs.CV;eess.IV;q-bio.QM;stat.ML q-bio.QM https://arxiv.org/abs/2510.01666 False False 2510.01694 First passage times to T cell activation 2025-10-02 q-bio.CB;q-bio.QM q-bio.CB https://arxiv.org/abs/2510.01694 False False 2510.01753 Promoting arm movement practice with a novel wheelchair armrest early after stroke: A randomized controlled trial 2025-10-02 q-bio.NC q-bio.NC https://arxiv.org/abs/2510.01753 False False 2510.01858 Compositional meta-learning through probabilistic task inference 2025-10-02 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2510.01858 False False 2510.01864 A Modular Theory of Subjective Consciousness for Natural and Artificial Minds 2025-10-02 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2510.01864 False False 2510.01890 Folding lattice proteins confined on minimal grids using a quantum-inspired encoding 2025-10-02 physics.bio-ph;physics.quant-ph;physics.soft;q-bio.BM q-bio.BM https://arxiv.org/abs/2510.01890 False False 2510.02037 A Multicentric Dataset for Training and Benchmarking Breast Cancer Segmentation in H&E Slides 2025-10-02 cs.CV;eess.IV;q-bio.QM q-bio.QM https://arxiv.org/abs/2510.02037 False False 2510.02139 BioinfoMCP: A Unified Platform Enabling MCP Interfaces in Agentic Bioinformatics 2025-10-02 cs.AI;cs.LG;cs.MA;q-bio.QM q-bio.QM https://arxiv.org/abs/2510.02139 False False 2510.02259 Transformers Discover Molecular Structure Without Graph Priors 2025-10-02 cs.LG;physics.chem-ph;physics.mtrl-sci;q-bio.BM q-bio.BM https://arxiv.org/abs/2510.02259 False False 2510.02416 Cross-Platform DNA Methylation Classifier for the Eight Molecular Subtypes of Group 3 & 4 Medulloblastoma 2025-10-02 cs.AI;q-bio.GN q-bio.GN https://arxiv.org/abs/2510.02416 False False 2510.02482 Surface Acoustic Wave Hemolysis Assay for Evaluating Stored Red Blood Cells 2025-10-02 physics.bio-ph;physics.med-ph;q-bio.QM q-bio.QM https://arxiv.org/abs/2510.02482 False False 2510.02120 VarCoNet: A variability-aware self-supervised framework for functional connectome extraction from resting-state fMRI 2025-10-02 cs.AI;cs.LG;cs.NE;q-bio.NC q-bio.NC https://arxiv.org/abs/2510.02120 False False 2510.02533 Head and Eye Control in Persons with Low Vision during Urban Navigation 2025-10-02 q-bio.QM q-bio.QM https://arxiv.org/abs/2510.02533 False False 2510.02545 Mean-field analysis of a neural network with stochastic STDP 2025-10-02 math.PR;physics.bio-ph;physics.dis-nn;q-bio.NC q-bio.NC https://arxiv.org/abs/2510.02545 0.8078 0.8185 True 6 7.2 False 2510.02596 Accurate linear modeling of EEG-based cortical activity during a passive motor task with input: a sub-space identification approach 2025-10-02 q-bio.NC q-bio.NC https://arxiv.org/abs/2510.02596 False False 2510.03337 Error correction in multiclass image classification of facial emotion on unbalanced samples 2025-10-02 cs.CV;q-bio.NC q-bio.NC https://arxiv.org/abs/2510.03337 False False 2510.03340 Learning Pareto-Optimal Pandemic Intervention Policies with MORL 2025-10-02 cs.AI;cs.CY;cs.LG;q-bio.PE q-bio.PE https://arxiv.org/abs/2510.03340 False False 2510.03357 Effect of Attachment Surface on Biofilm Response and the Dissipation of PAHs and nitrogen in Submerged Plant System under the application of Bactericide and Algaecide 2025-10-02 q-bio.CB q-bio.CB https://arxiv.org/abs/2510.03357 False False 2510.02476 Uncertainty-Guided Model Selection for Tabular Foundation Models in Biomolecule Efficacy Prediction 2025-10-02 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2510.02476 False False 2510.06235 Stacked Regression using Off-the-shelf, Stimulus-tuned and Fine-tuned Neural Networks for Predicting fMRI Brain Responses to Movies (Algonauts 2025 Report) 2025-10-02 cs.AI;cs.CV;eess.IV;q-bio.NC q-bio.NC https://arxiv.org/abs/2510.06235 False False 2510.06236 Space, time and altruism in pandemics and the climate emergency 2025-10-02 physics.soc-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2510.06236 False False 2510.06237 Coupled opinion-environmental dynamics in polarized and prejudiced populations 2025-10-02 physics.AO;physics.soc-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2510.06237 False False 2510.19826 Neurotremor: A wearable Supportive Device for Supporting Upper Limb Muscle Function 2025-10-02 cs.ET;cs.LG;q-bio.NC;q-bio.TO q-bio.NC https://arxiv.org/abs/2510.19826 False False 2510.01808 Optimization of sequential therapies to maximize extinction of resistant bacteria through collateral sensitivity 2025-10-02 physics.bio-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2510.01808 False False 2510.02568 Identifying Asymptomatic Nodes in Network Epidemics using Graph Neural Networks 2025-10-02 cs.NE;cs.SI;q-bio.PE q-bio.PE https://arxiv.org/abs/2510.02568 False False 2510.01935 scRNA-seq of preeclamptic trophoblasts identifies EBI3, COL17A1, miR-27a-5p, and miR-193b-5p as hypoxia markers: validation of neuradapt as a superior mimetic to cobalt chloride 2025-10-02 q-bio.CB;q-bio.GN;q-bio.TO q-bio.CB https://arxiv.org/abs/2510.01935 False False 2510.02578 FLOWR.root: A flow matching based foundation model for joint multi-purpose structure-aware 3D ligand generation and affinity prediction 2025-10-02 cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2510.02578 False False 2510.02182 Uncovering Semantic Selectivity of Latent Groups in Higher Visual Cortex with Mutual Information-Guided Diffusion 2025-10-02 cs.CV;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2510.02182 False False 2510.02182 Uncovering Semantic Selectivity of Latent Groups in Higher Visual Cortex with Mutual Information-Guided Diffusion 2025-10-02 cs.CV;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2510.02182 False False 2510.02578 FLOWR.root: A flow matching based foundation model for joint multi-purpose structure-aware 3D ligand generation and affinity prediction 2025-10-02 cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2510.02578 False False 2510.01808 Optimization of sequential therapies to maximize extinction of resistant bacteria through collateral sensitivity 2025-10-02 physics.bio-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2510.01808 False False 2510.01808 Optimization of sequential therapies to maximize extinction of resistant bacteria through collateral sensitivity 2025-10-02 physics.bio-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2510.01808 False False 2510.01632 BioBlobs: Unsupervised Discovery of Functional Substructures for Protein Function Prediction 2025-10-02 cs.AI;q-bio.BM q-bio.BM https://arxiv.org/abs/2510.01632 False False 2510.01632 BioBlobs: Unsupervised Discovery of Functional Substructures for Protein Function Prediction 2025-10-02 cs.AI;q-bio.BM q-bio.BM https://arxiv.org/abs/2510.01632 False False 2510.01632 BioBlobs: Unsupervised Discovery of Functional Substructures for Protein Function Prediction 2025-10-02 cs.AI;q-bio.BM q-bio.BM https://arxiv.org/abs/2510.01632 False False 2510.01632 BioBlobs: Unsupervised Discovery of Functional Substructures for Protein Function Prediction 2025-10-02 cs.AI;q-bio.BM q-bio.BM https://arxiv.org/abs/2510.01632 False False 2510.02578 FLOWR.root: A flow matching based foundation model for joint multi-purpose structure-aware 3D ligand generation and affinity prediction 2025-10-02 cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2510.02578 False False 2510.02578 FLOWR.root: A flow matching based foundation model for joint multi-purpose structure-aware 3D ligand generation and affinity prediction 2025-10-02 cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2510.02578 False False 2510.02545 Mean-field analysis of a neural network with stochastic STDP 2025-10-02 math.PR;physics.bio-ph;physics.dis-nn;q-bio.NC q-bio.NC https://arxiv.org/abs/2510.02545 0.8078 0.8185 True 6 7.2 False 2510.02545 Mean-field analysis of a neural network with stochastic STDP 2025-10-02 math.PR;physics.bio-ph;physics.dis-nn;q-bio.NC q-bio.NC https://arxiv.org/abs/2510.02545 0.8078 0.8185 True 6 7.2 False 2510.00392 A Deep Learning Pipeline for Epilepsy Genomic Analysis Using GPT-2 XL and NVIDIA H100 2025-10-01 cs.CV;cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2510.00392 False False 2510.00423 Evolutionary Kuramoto dynamics unravels origins of chimera states in neural populations 2025-10-01 q-bio.NC q-bio.NC https://arxiv.org/abs/2510.00423 False False 2510.00498 Emergence of robust looming selectivity via coordinated inhibitory neural computations 2025-10-01 cs.NE;q-bio.NC q-bio.NC https://arxiv.org/abs/2510.00498 False False 2510.00512 Adaptive Data-Knowledge Alignment in Genetic Perturbation Prediction 2025-10-01 cs.AI;cs.LG;q-bio.MN q-bio.MN https://arxiv.org/abs/2510.00512 False False 2510.00764 Emergence of Deviance Detection in Cortical Cultures through Maturation, Criticality, and Early Experience 2025-10-01 q-bio.NC q-bio.NC https://arxiv.org/abs/2510.00764 False False 2510.00976 Adaptive Federated Few-Shot Rare-Disease Diagnosis with Energy-Aware Secure Aggregation 2025-10-01 cs.AI;cs.CR;cs.DC;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2510.00976 False False 2510.01000 Some Further Developments on a Neurobiologically-based Model for Color Sensations in Humans 2025-10-01 q-bio.NC q-bio.NC https://arxiv.org/abs/2510.01000 False False 2510.01078 Parameter Estimation in Recurrent Tumor Evolution with Finite Carrying Capacity 2025-10-01 math.PR;q-bio.PE q-bio.PE https://arxiv.org/abs/2510.01078 False False 2510.01108 Integrative modelling of biomolecular dynamics 2025-10-01 q-bio.BM q-bio.BM https://arxiv.org/abs/2510.01108 False False 2510.01287 Evaluating New AI Cell Foundation Models on Challenging Kidney Pathology Cases Unaddressed by Previous Foundation Models 2025-10-01 cs.AI;q-bio.QM q-bio.QM https://arxiv.org/abs/2510.01287 False False 2510.01428 BioVERSE: Representation Alignment of Biomedical Modalities to LLMs for Multi-Modal Reasoning 2025-10-01 cs.AI;q-bio.QM q-bio.QM https://arxiv.org/abs/2510.01428 False False 2510.01480 Pharmacophore-Guided Generative Design of Novel Drug-Like Molecules 2025-10-01 cs.AI;q-bio.QM q-bio.QM https://arxiv.org/abs/2510.01480 False False 2510.01502 Aligning Video Models with Human Social Judgments via Behavior-Guided Fine-Tuning 2025-10-01 cs.CV;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2510.01502 False False 2510.02403 Glaucoma Detection and Structured OCT Report Generation via a Fine-tuned Multimodal Large Language Model 2025-10-01 cs.AI;cs.CV;q-bio.QM q-bio.QM https://arxiv.org/abs/2510.02403 False False 2510.03326 NS-Pep: De novo Peptide Design with Non-Standard Amino Acids 2025-10-01 cs.AI;q-bio.BM q-bio.BM https://arxiv.org/abs/2510.03326 False False 2510.06230 Robust Federated Anomaly Detection Using Dual-Signal Autoencoders: Application to Kidney Stone Identification in Ureteroscopy 2025-10-01 q-bio.TO q-bio.TO https://arxiv.org/abs/2510.06230 False False 2510.06232 Neu-RadBERT for Enhanced Diagnosis of Brain Injuries and Conditions 2025-10-01 cs.LG;q-bio.TO q-bio.TO https://arxiv.org/abs/2510.06232 False False 2510.01298 MorphGen: Controllable and Morphologically Plausible Generative Cell-Imaging 2025-10-01 cs.CV;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2510.01298 False False 2510.14989 Constrained Diffusion for Protein Design with Hard Structural Constraints 2025-10-01 cs.AI;cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2510.14989 False False 2510.00733 Neural Diffusion Processes for Physically Interpretable Survival Prediction 2025-10-01 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2510.00733 False False 2510.17826 Speak to a Protein: An Interactive Multimodal Co-Scientist for Protein Analysis 2025-10-01 cs.AI;q-bio.BM q-bio.BM https://arxiv.org/abs/2510.17826 False False 2510.01026 Evaluating sampling strategies for effective detection of African swine fever in the growing pig population in the U.S 2025-10-01 q-bio.PE q-bio.PE https://arxiv.org/abs/2510.01026 False False 2510.01386 A Single-Equation Approach to Classifying Neuronal Operational Modes 2025-10-01 math.DS;q-bio.NC q-bio.NC https://arxiv.org/abs/2510.01386 False False 2510.00774 GeoGraph: Geometric and Graph-based Ensemble Descriptors for Intrinsically Disordered Proteins 2025-10-01 cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2510.00774 False False 2510.01484 Bayesian Re-Analysis of the Phylogenetic Topology of Early SARS-CoV-2 Case Sequences 2025-10-01 q-bio.PE;q-bio.QM q-bio.PE https://arxiv.org/abs/2510.01484 False False 2510.01089 Double projection for reconstructing dynamical systems: between stochastic and deterministic regimes 2025-10-01 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2510.01089 False False 2510.14989 Constrained Diffusion for Protein Design with Hard Structural Constraints 2025-10-01 cs.AI;cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2510.14989 False False 2510.00512 Adaptive Data-Knowledge Alignment in Genetic Perturbation Prediction 2025-10-01 cs.AI;cs.LG;q-bio.MN q-bio.MN https://arxiv.org/abs/2510.00512 False False 2510.01484 Bayesian Re-Analysis of the Phylogenetic Topology of Early SARS-CoV-2 Case Sequences 2025-10-01 q-bio.PE;q-bio.QM q-bio.PE https://arxiv.org/abs/2510.01484 False False 2510.00733 Neural Diffusion Processes for Physically Interpretable Survival Prediction 2025-10-01 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2510.00733 False False 2510.00733 Neural Diffusion Processes for Physically Interpretable Survival Prediction 2025-10-01 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2510.00733 False False 2510.01502 Behavioral Geometric Supervision Aligns Video Foundation Models with Human Social Perception 2025-10-01 cs.CV;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2510.01502 False False 2510.01502 Behavioral Geometric Supervision Aligns Video Foundation Models with Human Social Perception 2025-10-01 cs.CV;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2510.01502 False False 2510.00423 Evolutionary Kuramoto dynamics unravels origins of chimera states in neural populations 2025-10-01 q-bio.NC q-bio.NC https://arxiv.org/abs/2510.00423 False False 2510.00423 Evolutionary Kuramoto dynamics unravels origins of chimera states in neural populations 2025-10-01 q-bio.NC q-bio.NC https://arxiv.org/abs/2510.00423 False False 2510.03306 Atlas-free Brain Network Transformer 2025-09-30 cs.AI;cs.LG;cs.NE;eess.IV;q-bio.NC q-bio.NC https://arxiv.org/abs/2510.03306 False False 2509.25615 What does the tree of life look like as it grows? Evolution and the multifractality of time 2025-09-30 math.DS;math.PR;physics.bio-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2509.25615 False False 2509.25640 Analysis of a Spatialized Brain-Body-Environment System 2025-09-30 cs.NE;q-bio.NC q-bio.NC https://arxiv.org/abs/2509.25640 False False 2509.25680 Rotational migration in human pancreatic ductal organoids depends on actin and myosin activity 2025-09-30 physics.bio-ph;physics.soft;q-bio.CB q-bio.CB https://arxiv.org/abs/2509.25680 False False 2509.25872 Marginal Girsanov Reweighting: Stable Variance Reduction via Neural Ratio Estimation 2025-09-30 q-bio.BM;q-bio.QM q-bio.BM https://arxiv.org/abs/2509.25872 False False 2509.26019 Structural Heterogeneity of the Drosophila Brain Network 2025-09-30 q-bio.NC q-bio.NC https://arxiv.org/abs/2509.26019 False False 2509.26083 Bibliometric-enhanced Systematic Literature Review of EEG in Education: Learning Concepts, Computational Methods, and Research Opportunities 2025-09-30 eess.SP;q-bio.NC q-bio.NC https://arxiv.org/abs/2509.26083 False False 2509.26085 A Chaotic Dynamics Framework Inspired by Dorsal Stream for Event Signal Processing 2025-09-30 q-bio.NC q-bio.NC https://arxiv.org/abs/2509.26085 False False 2509.26090 Coexistence of two adaptation processes in a visuomotor rotation task 2025-09-30 q-bio.NC q-bio.NC https://arxiv.org/abs/2509.26090 False False 2509.26223 Nephrobase Cell+: Multimodal Single-Cell Foundation Model for Decoding Kidney Biology 2025-09-30 q-bio.GN q-bio.GN https://arxiv.org/abs/2509.26223 False False 2509.26254 $K$-Branching Random Walk with Noisy Selection: Large Population Limits and Phase Transitions 2025-09-30 math.PR;q-bio.PE q-bio.PE https://arxiv.org/abs/2509.26254 False False 2509.26259 Millennium Pathways for Tractography: 40 grand challenges to shape the future of tractography 2025-09-30 physics.med-ph;q-bio.TO q-bio.TO https://arxiv.org/abs/2509.26259 False False 2509.26566 Commutative algebra neural network reveals genetic origins of diseases 2025-09-30 math.AC;q-bio.BM;q-bio.QM q-bio.BM https://arxiv.org/abs/2509.26566 False False 2509.26577 Stochasticity and Practical Identifiability in Epidemic Models: A Monte Carlo Perspective 2025-09-30 q-bio.QM;stat.ME q-bio.QM https://arxiv.org/abs/2509.26577 False False 2509.26606 Beyond Suboptimality: Resource-Rationality and Task Demands Shape the Complexity of Perceptual Representations 2025-09-30 q-bio.NC q-bio.NC https://arxiv.org/abs/2509.26606 False False 2510.00086 Behavioural Classification in C. elegans: a Spatio-Temporal Analysis of Locomotion 2025-09-30 cs.CV;q-bio.QM q-bio.QM https://arxiv.org/abs/2510.00086 False False 2510.00087 Revealing the temporal dynamics of antibiotic anomalies in the infant gut microbiome with neural jump ODEs 2025-09-30 cs.LG;math.PR;q-bio.QM;stat.AP q-bio.QM https://arxiv.org/abs/2510.00087 False False 2510.00340 Modelling road mortality risks to persistence to a Western Toad ({\it Anaxyrus boreas}) population in British Columbia 2025-09-30 math.DS;q-bio.PE q-bio.PE https://arxiv.org/abs/2510.00340 False False 2510.00351 Flow Autoencoders are Effective Protein Tokenizers 2025-09-30 cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2510.00351 False False 2510.01282 To Remember, To Adapt, To Preempt: A Stable Continual Test-Time Adaptation Framework for Remote Physiological Measurement in Dynamic Domain Shifts 2025-09-30 q-bio.QM q-bio.QM https://arxiv.org/abs/2510.01282 False False 2510.00352 AReUReDi: Annealed Rectified Updates for Refining Discrete Flows with Multi-Objective Guidance 2025-09-30 cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2510.00352 False False 2510.03304 Stability of Fractional-Order Discrete-Time Systems with Application to Rulkov Neural Networks and Asymmetric Memristor Synapses 2025-09-30 q-bio.NC q-bio.NC https://arxiv.org/abs/2510.03304 False False 2510.03309 Thin Bridges for Drug Text Alignment: Lightweight Contrastive Learning for Target Specific Drug Retrieval 2025-09-30 cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2510.03309 False False 2510.03311 Not Even Wrong: On the Limits of Prediction as Explanation in Cognitive Science 2025-09-30 q-bio.NC q-bio.NC https://arxiv.org/abs/2510.03311 False False 2510.00353 The Multivariate SEM-PGS Model: Using Polygenic Scores to Investigate Cross-Trait Genetic Nurture and Assortative Mating 2025-09-30 q-bio.GN;q-bio.QM;stat.AP q-bio.GN https://arxiv.org/abs/2510.00353 False False 2510.00178 Predicting MacroB12: Data-Driven Assessment of Pre-PEG B12 Utility and Clinical Caveats 2025-09-30 physics.data-an;q-bio.QM q-bio.QM https://arxiv.org/abs/2510.00178 False False 2510.00155 Information and the living tree of life: A theory of measurement grounded in biology 2025-09-30 math.PR;physics.bio-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2510.00155 False False 2509.25884 scUnified: An AI-Ready Standardized Resource for Single-Cell RNA Sequencing Analysis 2025-09-30 cs.AI;q-bio.GN q-bio.GN https://arxiv.org/abs/2509.25884 False False 2510.03306 Atlas-free Brain Network Transformer 2025-09-30 cs.AI;cs.LG;cs.NE;eess.IV;q-bio.NC q-bio.NC https://arxiv.org/abs/2510.03306 False False 2509.26560 Estimating Dimensionality of Neural Representations from Finite Samples 2025-09-30 cs.LG;q-bio.NC;stat.ML q-bio.NC https://arxiv.org/abs/2509.26560 False False 2509.25872 Marginal Girsanov Reweighting: Stable Variance Reduction for Long-Timescale Dynamics from Biased Simulation 2025-09-30 q-bio.BM;q-bio.QM q-bio.BM https://arxiv.org/abs/2509.25872 False False 2509.24614 Controlling sternness in judging a good person who helps the bad 2025-09-29 physics.soc-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2509.24614 False False 2509.24657 Modeling the control of West Nile virus using mosquito reduction methods, vaccination of equids, and human behavioral adaptation to the usage of personal protective equipment 2025-09-29 math.DS;q-bio.PE q-bio.PE https://arxiv.org/abs/2509.24657 False False 2509.24692 Griffiths phase emerging from strong mutualistic disorder in high-dimensional interacting systems 2025-09-29 physics.dis-nn;physics.stat-mech;q-bio.PE q-bio.PE https://arxiv.org/abs/2509.24692 False False 2509.24693 Brain Harmony: A Multimodal Foundation Model Unifying Morphology and Function into 1D Tokens 2025-09-29 q-bio.NC q-bio.NC https://arxiv.org/abs/2509.24693 False False 2509.24715 Dark Signals in the Brain: Augment Brain Network Dynamics to the Complex-valued Field 2025-09-29 q-bio.NC q-bio.NC https://arxiv.org/abs/2509.24715 False False 2509.24919 Meta-Learning Theory-Informed Inductive Biases using Deep Kernel Gaussian Processes 2025-09-29 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2509.24919 False False 2509.24933 Is Sequence Information All You Need for Bayesian Optimization of Antibodies? 2025-09-29 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2509.24933 False False 2509.24953 Fire severity and recovery across Europe: insights from forest diversity and landscape metrics 2025-09-29 q-bio.PE q-bio.PE https://arxiv.org/abs/2509.24953 False False 2509.24985 A minimal model of self-organized clusters with phase transitions in ecological communities 2025-09-29 physics.stat-mech;q-bio.PE q-bio.PE https://arxiv.org/abs/2509.24985 False False 2509.25069 Effectiveness and Safety of Selective IL-23 Receptor Antagonists in Moderate to Severe Ulcerative Colitis: A Systematic Review, Meta-Analysis and Trial Sequential Analysis 2025-09-29 q-bio.TO q-bio.TO https://arxiv.org/abs/2509.25069 False False 2509.25171 TR2-D2: Tree Search Guided Trajectory-Aware Fine-Tuning for Discrete Diffusion 2025-09-29 cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2509.25171 False False 2509.25291 Mathematical Framework for Epidemic Dynamics: Optimal Control and Global Sensitivity Analysis 2025-09-29 math.DS;q-bio.PE q-bio.PE https://arxiv.org/abs/2509.25291 False False 2509.25346 SynthPert: Enhancing LLM Biological Reasoning via Synthetic Reasoning Traces for Cellular Perturbation Prediction 2025-09-29 cs.AI;cs.LG;q-bio.CB;q-bio.GN q-bio.CB https://arxiv.org/abs/2509.25346 False False 2509.25386 Spatial correlations in SIS processes on regular random graphs 2025-09-29 physics.comp-ph;physics.stat-mech;q-bio.PE q-bio.PE https://arxiv.org/abs/2509.25386 False False 2509.25417 Computational Drug Repurposing for Alzheimer's Disease via Sheaf Theoretic Population-Scale Analysis of snRNA-seq Data 2025-09-29 q-bio.MN q-bio.MN https://arxiv.org/abs/2509.25417 False False 2509.24779 MarS-FM: Generative Modeling of Molecular Dynamics via Markov State Models 2025-09-29 cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2509.24779 False False 2509.24952 De novo peptide sequencing rescoring and FDR estimation with Winnow 2025-09-29 q-bio.QM q-bio.QM https://arxiv.org/abs/2509.24952 False False 2509.25485 A Mathematical Model of Hematopoiesis during Systemic Infection 2025-09-29 q-bio.CB q-bio.CB https://arxiv.org/abs/2509.25485 False False 2509.25509 Can Molecular Foundation Models Know What They Don't Know? A Simple Remedy with Preference Optimization 2025-09-29 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2509.25509 False False 2509.25573 GenVarFormer: Predicting gene expression from long-range mutations in cancer 2025-09-29 q-bio.GN q-bio.GN https://arxiv.org/abs/2509.25573 False False 2509.25479 Discontinuous Epitope Fragments as Sufficient Target Templates for Efficient Binder Design 2025-09-29 cs.AI;q-bio.BM q-bio.BM https://arxiv.org/abs/2509.25479 False False 2510.03286 A Biologically Interpretable Cognitive Architecture for Online Structuring of Episodic Memories into Cognitive Maps 2025-09-29 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2510.03286 False False 2510.17822 A Biophysical-Model-Informed Source Separation Framework For EMG Decomposition 2025-09-29 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2510.17822 False False 2509.24262 LAMP-PRo: Label-aware Attention for Multi-label Prediction of DNA- and RNA-binding Proteins using Protein Language Models 2025-09-29 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2509.24262 False False 2509.24655 HyperHELM: Hyperbolic Hierarchy Encoding for mRNA Language Modeling 2025-09-29 cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2509.24655 False False 2509.25453 Neural Receptive Fields, Stimulus Space Embedding and Effective Geometry of Scale-Free Networks 2025-09-29 q-bio.NC q-bio.NC https://arxiv.org/abs/2509.25453 False False 2509.25554 Continuum models describing probabilistic motion of tagged agents in exclusion processes 2025-09-29 q-bio.PE q-bio.PE https://arxiv.org/abs/2509.25554 0.7632 0.8027 True 6 6.75 False 2509.24926 Bifurcations and multistability in inducible three-gene toggle switch networks 2025-09-29 physics.bio-ph;q-bio.MN;q-bio.SC q-bio.MN https://arxiv.org/abs/2509.24926 False False 2509.25501 Load Transfer along Continuous Collagen Fibers Reduces the Importance of Wall Thickness Variations 2025-09-29 q-bio.TO q-bio.TO https://arxiv.org/abs/2509.25501 False False 2509.24522 The role of viral dynamics and infectivity in models of oncolytic virotherapy for tumours with different motility 2025-09-29 q-bio.PE q-bio.PE https://arxiv.org/abs/2509.24522 False False 2509.24657 Modelling the control of West Nile virus using mosquito reduction methods, vaccination of equids, and human behavioral adaptation to the usage of personal protective equipment 2025-09-29 math.DS;q-bio.PE q-bio.PE https://arxiv.org/abs/2509.24657 False False 2509.25386 Spatial correlations in SIS processes on random regular graphs 2025-09-29 physics.comp-ph;physics.stat-mech;q-bio.PE q-bio.PE https://arxiv.org/abs/2509.25386 False False 2509.24522 The role of viral dynamics and infectivity in models of oncolytic virotherapy for tumours with different motility 2025-09-29 q-bio.PE q-bio.PE https://arxiv.org/abs/2509.24522 False False 2509.24779 MarS-FM: Generative Modeling of Molecular Dynamics via Markov State Models 2025-09-29 cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2509.24779 False False 2509.24985 Minimal model of self-organized clusters with phase transitions in ecological communities 2025-09-29 physics.stat-mech;q-bio.PE q-bio.PE https://arxiv.org/abs/2509.24985 False False 2509.24985 Minimal model of self-organized clusters with phase transitions in ecological communities 2025-09-29 physics.stat-mech;q-bio.PE q-bio.PE https://arxiv.org/abs/2509.24985 False False 2509.25346 SynthPert: Enhancing LLM Biological Reasoning via Synthetic Reasoning Traces for Cellular Perturbation Prediction 2025-09-29 cs.AI;cs.LG;q-bio.CB;q-bio.GN q-bio.CB https://arxiv.org/abs/2509.25346 False False 2509.25346 SynthPert: Enhancing LLM Biological Reasoning via Synthetic Reasoning Traces for Cellular Perturbation Prediction 2025-09-29 cs.AI;cs.LG;q-bio.CB;q-bio.GN q-bio.CB https://arxiv.org/abs/2509.25346 False False 2509.23543 Contrastive Learning Enhances Language Model Based Cell Embeddings for Low-Sample Single Cell Transcriptomics 2025-09-28 cs.NE;q-bio.GN;q-bio.MN q-bio.GN https://arxiv.org/abs/2509.23543 False False 2509.23552 Fusing Sequence Motifs and Pan-Genomic Features: Antimicrobial Resistance Prediction using an Explainable Lightweight 1D CNN-XGBoost Ensemble 2025-09-28 cs.AI;cs.LG;q-bio.GN;q-bio.QM q-bio.GN https://arxiv.org/abs/2509.23552 False False 2509.23942 Efficient Identification of High Similarity Clusters in Polygon Datasets 2025-09-28 cs.DB;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2509.23942 False False 2509.23977 Population genetics in complex ecological communities 2025-09-28 physics.dis-nn;physics.stat-mech;q-bio.PE q-bio.PE https://arxiv.org/abs/2509.23977 False False 2509.24039 End-to-end Topographic Auditory Models Replicate Signatures of Human Auditory Cortex 2025-09-28 cs.AI;cs.CV;cs.SD;q-bio.NC q-bio.NC https://arxiv.org/abs/2509.24039 False False 2509.24063 TeraAgent: A Distributed Agent-Based Simulation Engine for Simulating Half a Trillion Agents 2025-09-28 cs.CE;cs.DC;cs.MA;cs.PF;q-bio.QM q-bio.QM https://arxiv.org/abs/2509.24063 False False 2509.23847 13CFLUX -- Third-generation high-performance engine for isotopically (non)stationary 13C metabolic flux analysis 2025-09-28 q-bio.QM q-bio.QM https://arxiv.org/abs/2509.23847 False False 2509.25274 DNABERT-2: Fine-Tuning a Genomic Language Model for Colorectal Gene Enhancer Classification 2025-09-28 cs.AI;cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2509.25274 False False 2510.00051 Latent Representation Learning from 3D Brain MRI for Interpretable Prediction in Multiple Sclerosis 2025-09-28 cs.CV;eess.IV;q-bio.QM q-bio.QM https://arxiv.org/abs/2510.00051 False False 2509.23896 A Computational Perspective on NeuroAI and Synthetic Biological Intelligence 2025-09-28 cs.ET;cs.NE;q-bio.NC q-bio.NC https://arxiv.org/abs/2509.23896 False False 2510.17820 The Standard Model of the Retina 2025-09-28 q-bio.NC q-bio.NC https://arxiv.org/abs/2510.17820 False False 2509.23941 Brain-language fusion enables interactive neural readout and in-silico experimentation 2025-09-28 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2509.23941 False False 2509.23977 Emergent frequency-dependent selection predicts mutation outcomes in complex ecological communities 2025-09-28 physics.dis-nn;physics.stat-mech;q-bio.PE q-bio.PE https://arxiv.org/abs/2509.23977 False False 2509.23977 Emergent frequency-dependent selection predicts mutation outcomes in complex ecological communities 2025-09-28 physics.dis-nn;physics.stat-mech;q-bio.PE q-bio.PE https://arxiv.org/abs/2509.23977 False False 2509.24039 Topographic Constraints Shape Brain-Like Component Structure in Auditory Models 2025-09-28 cs.AI;cs.CV;cs.SD;q-bio.NC q-bio.NC https://arxiv.org/abs/2509.24039 False False 2509.23445 Uncertainty Quantification of Bacterial Microcompartment Permeability 2025-09-27 q-bio.QM;q-bio.SC q-bio.QM https://arxiv.org/abs/2509.23445 False False 2509.23057 Challenges in structural variant calling in low-complexity regions 2025-09-27 q-bio.GN q-bio.GN https://arxiv.org/abs/2509.23057 False False 2509.23104 Feedback promotes efficient-coding while attenuating bias in recurrent neural networks 2025-09-27 q-bio.NC q-bio.NC https://arxiv.org/abs/2509.23104 False False 2509.23195 Estimating the strength and timing of syntactic structure building in naturalistic reading 2025-09-27 cs.CL;q-bio.NC q-bio.NC https://arxiv.org/abs/2509.23195 False False 2509.23254 ABConformer: Physics-inspired Sliding Attention for Antibody-Antigen Interface Prediction 2025-09-27 cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2509.23254 False False 2509.23333 Targeted perturbations reveal brain-like local coding axes in robustified, but not standard, ANN-based brain models 2025-09-27 cs.CV;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2509.23333 False False 2509.23342 Consciousness Self and Language 2025-09-27 q-bio.NC q-bio.NC https://arxiv.org/abs/2509.23342 False False 2509.23397 On the effectiveness of odor-baited traps on mosquito-borne infections 2025-09-27 math.DS;q-bio.PE q-bio.PE https://arxiv.org/abs/2509.23397 False False 2509.23479 Dyadic Neural Dynamics: Extending Representation Learning to Social Neuroscience 2025-09-27 q-bio.NC q-bio.NC https://arxiv.org/abs/2509.23479 False False 2509.23524 EEG-Based Framework for Reflexive and Perceptual Assessment in CLIS: Preliminary Study in Healthy Volunteers 2025-09-27 eess.SP;q-bio.NC q-bio.NC https://arxiv.org/abs/2509.23524 False False 2509.23445 Uncertainty Quantification of Bacterial Microcompartment Permeability 2025-09-27 q-bio.QM;q-bio.SC q-bio.QM https://arxiv.org/abs/2509.23445 False False 2509.23195 The relative strength of hierarchical structure and statistics differs across the measures in naturalistic reading 2025-09-27 cs.CL;q-bio.NC q-bio.NC https://arxiv.org/abs/2509.23195 False False 2509.23195 The relative strength of hierarchical structure and statistics differs across the measures in naturalistic reading 2025-09-27 cs.CL;q-bio.NC q-bio.NC https://arxiv.org/abs/2509.23195 False False 2509.23195 Structure leads and dominates comprehension in naturalistic reading 2025-09-27 cs.CL;q-bio.NC q-bio.NC https://arxiv.org/abs/2509.23195 False False 2509.23195 Structure leads and dominates comprehension in naturalistic reading 2025-09-27 cs.CL;q-bio.NC q-bio.NC https://arxiv.org/abs/2509.23195 False False 2509.22209 A Bio-Inspired Minimal Model for Non-Stationary K-Armed Bandits 2025-09-26 q-bio.NC q-bio.NC https://arxiv.org/abs/2509.22209 False False 2509.22285 Controlled protein synthesis and spatial organisation in microfluidic environments 2025-09-26 q-bio.BM q-bio.BM https://arxiv.org/abs/2509.22285 False False 2509.22519 A phenotype-structured reaction-diffusion model of avascular glioma growth 2025-09-26 q-bio.PE q-bio.PE https://arxiv.org/abs/2509.22519 False False 2509.22520 Applications of the Vendi score in genomic epidemiology 2025-09-26 q-bio.PE;q-bio.QM q-bio.PE https://arxiv.org/abs/2509.22520 False False 2509.22760 Identifying Memory Effects in Epidemics via a Fractional SEIRD Model and Physics-Informed Neural Networks 2025-09-26 cs.LG;q-bio.QM;stat.ML q-bio.QM https://arxiv.org/abs/2509.22760 False False 2509.22853 Patient-specific Biomolecular Instruction Tuning 2025-09-26 cs.AI;cs.CL;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2509.22853 False False 2509.22950 Twin Peaks: Dual-Head Architecture for Structure-Free Prediction of Protein-Protein Binding Affinity and Mutation Effects 2025-09-26 q-bio.QM q-bio.QM https://arxiv.org/abs/2509.22950 False False 2510.00032 WaveMind: Towards a Conversational EEG Foundation Model Aligned to Textual and Visual Modalities 2025-09-26 cs.AI;cs.CL;cs.LG;eess.SP;q-bio.NC q-bio.NC https://arxiv.org/abs/2510.00032 False False 2509.22920 Beyond the Clinic: A Large-Scale Evaluation of Augmenting EHR with Wearable Data for Diverse Health Prediction 2025-09-26 q-bio.QM q-bio.QM https://arxiv.org/abs/2509.22920 False False 2509.22997 Design principles of the cytotoxic CD8+ T-cell response 2025-09-26 physics.bio-ph;q-bio.CB q-bio.CB https://arxiv.org/abs/2509.22997 True 6 7.05 False 2509.20693 Learning to Align Molecules and Proteins: A Geometry-Aware Approach to Binding Affinity 2025-09-25 cs.AI;cs.LG;q-bio.MN q-bio.MN https://arxiv.org/abs/2509.20693 False False 2509.20702 Incorporating LLM Embeddings for Variation Across the Human Genome 2025-09-25 cs.AI;q-bio.GN;stat.AP q-bio.GN https://arxiv.org/abs/2509.20702 False False 2509.20850 Detecting gene-environment interactions to guide personalized intervention: boosting distributional regression for polygenic scores 2025-09-25 q-bio.GN;q-bio.QM;stat.AP;stat.CO q-bio.GN https://arxiv.org/abs/2509.20850 False False 2509.21132 Detecting disease progression from animal movement using hidden Markov models 2025-09-25 q-bio.QM;stat.AP q-bio.QM https://arxiv.org/abs/2509.21132 False False 2509.21239 SlideMamba: Entropy-Based Adaptive Fusion of GNN and Mamba for Enhanced Representation Learning in Digital Pathology 2025-09-25 cs.CV;q-bio.QM q-bio.QM https://arxiv.org/abs/2509.21239 False False 2509.21504 Discovering alternative solutions beyond the simplicity bias in recurrent neural networks 2025-09-25 cs.NE;q-bio.NC q-bio.NC https://arxiv.org/abs/2509.21504 False False 2509.21594 Transabdominal Fetal Oximetry via Diffuse Optics: Principled Analysis and Demonstration in Pregnant Ovine Models 2025-09-25 eess.IV;eess.SP;q-bio.QM q-bio.QM https://arxiv.org/abs/2509.21594 False False 2509.20916 Cross-Linguistic Analysis of Memory Load in Sentence Comprehension: Linear Distance and Structural Density 2025-09-25 cs.CL;q-bio.NC q-bio.NC https://arxiv.org/abs/2509.20916 False False 2509.20988 AOT*: Efficient Synthesis Planning via LLM-Empowered AND-OR Tree Search 2025-09-25 cs.AI;q-bio.QM q-bio.QM https://arxiv.org/abs/2509.20988 False False 2509.21206 Data-driven Neural Networks for Windkessel Parameter Calibration 2025-09-25 cs.LG;cs.NA;math.NA;math.OC;q-bio.QM;q-bio.TO q-bio.QM https://arxiv.org/abs/2509.21206 False False 2509.21671 Neuroprobe: Evaluating Intracranial Brain Responses to Naturalistic Stimuli 2025-09-25 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2509.21671 False False 2510.00027 Learning Inter-Atomic Potentials without Explicit Equivariance 2025-09-25 cs.AI;cs.LG;q-bio.BM;q-bio.QM q-bio.BM https://arxiv.org/abs/2510.00027 False False 2509.21191 Not All Accuracy Is Equal: Prioritizing Independence in Infectious Disease Forecasting 2025-09-25 q-bio.QM;stat.AP q-bio.QM https://arxiv.org/abs/2509.21191 False False 2509.20719 A Genetic Algorithm for Navigating Synthesizable Molecular Spaces 2025-09-25 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2509.20719 False False 2509.21277 More than a feeling: Expressive style influences cortical speech tracking in subjective cognitive decline 2025-09-25 q-bio.NC q-bio.NC https://arxiv.org/abs/2509.21277 False False 2509.21277 More than a feeling: Expressive style influences cortical speech tracking in subjective cognitive decline 2025-09-25 q-bio.NC q-bio.NC https://arxiv.org/abs/2509.21277 False False 2509.20702 Incorporating LLM Embeddings for Variation Across the Human Genome 2025-09-25 cs.AI;q-bio.GN;stat.AP q-bio.GN https://arxiv.org/abs/2509.20702 False False 2510.00027 Learning Inter-Atomic Potentials without Explicit Equivariance 2025-09-25 cs.AI;cs.LG;q-bio.BM;q-bio.QM q-bio.BM https://arxiv.org/abs/2510.00027 False False 2509.21671 Neuroprobe: Evaluating Intracranial Brain Responses to Naturalistic Stimuli 2025-09-25 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2509.21671 False False 2509.21671 Neuroprobe: Evaluating Intracranial Brain Responses to Naturalistic Stimuli 2025-09-25 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2509.21671 False False 2509.21277 More than a feeling: Expressive style influences cortical speech tracking in subjective cognitive decline 2025-09-25 q-bio.NC q-bio.NC https://arxiv.org/abs/2509.21277 False False 2509.21277 More than a feeling: Expressive style influences cortical speech tracking in subjective cognitive decline 2025-09-25 q-bio.NC q-bio.NC https://arxiv.org/abs/2509.21277 False False 2509.19720 Evolution of phenocopying in a dynamical model of developmental trajectories 2025-09-24 physics.bio-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2509.19720 False False 2509.19988 BioBO: Biology-informed Bayesian Optimization for Perturbation Design 2025-09-24 cs.LG;q-bio.QM;stat.ML q-bio.QM https://arxiv.org/abs/2509.19988 False False 2509.20101 First-Extinction Law for Resampling Processes 2025-09-24 cs.IT;cs.LG;math.IT;math.ST;physics.data-an;q-bio.PE;stat.ML;stat.TH q-bio.PE https://arxiv.org/abs/2509.20101 False False 2509.20216 Ising dynamics on multilayer networks with heterogeneous layers 2025-09-24 physics.soc-ph;physics.stat-mech;q-bio.NC q-bio.NC https://arxiv.org/abs/2509.20216 False False 2509.20279 A co-evolving agentic AI system for medical imaging analysis 2025-09-24 cs.CV;q-bio.QM q-bio.QM https://arxiv.org/abs/2509.20279 False False 2509.20290 PGCLODA: Prompt-Guided Graph Contrastive Learning for Oligopeptide-Infectious Disease Association Prediction 2025-09-24 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2509.20290 False False 2509.20303 An energy-based mathematical model of actin-driven protrusions in eukaryotic chemotaxis 2025-09-24 q-bio.CB q-bio.CB https://arxiv.org/abs/2509.20303 False False 2509.20538 Pattern Formation in Agent-Based and PDE Models for Evolutionary Games with Payoff-Driven Motion 2025-09-24 physics.PS;q-bio.PE q-bio.PE https://arxiv.org/abs/2509.20538 False False 2509.20542 A Hierarchical Adaptive Diffusion Model for Flexible Protein-Protein Docking 2025-09-24 cs.CE;q-bio.BM q-bio.BM https://arxiv.org/abs/2509.20542 False False 2509.20013 A decision-theoretic framework for uncertainty quantification in epidemiological modelling 2025-09-24 q-bio.QM;stat.ME q-bio.QM https://arxiv.org/abs/2509.20013 False False 2509.19988 BioBO: Biology-informed Bayesian Optimization for Perturbation Design 2025-09-24 cs.LG;q-bio.QM;stat.ML q-bio.QM https://arxiv.org/abs/2509.19988 False False 2509.18507 Dynamical Modeling of Behaviorally Relevant Spatiotemporal Patterns in Neural Imaging Data 2025-09-23 cs.AI;cs.CV;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2509.18507 False False 2509.18529 Reverse-Complement Consistency for DNA Language Models 2025-09-23 cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2509.18529 False False 2509.18599 From Noise to Insight: Visualizing Neural Dynamics with Segmented SNR Topographies for Improved EEG-BCI Performance 2025-09-23 q-bio.NC;q-bio.QM q-bio.NC https://arxiv.org/abs/2509.18599 False False 2509.18627 BRAID: Input-Driven Nonlinear Dynamical Modeling of Neural-Behavioral Data 2025-09-23 cs.AI;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2509.18627 False False 2509.18688 Apport de l'imagerie c{é}r{é}brale pour comprendre les d{é}ficits linguistiques 2025-09-23 q-bio.NC q-bio.NC https://arxiv.org/abs/2509.18688 False False 2509.18758 Complexity of Activity Patterns in a Bio-Inspired Hopfield-Type Network in Different Topologies 2025-09-23 cs.AI;physics.AO;physics.bio-ph;q-bio.NC q-bio.NC https://arxiv.org/abs/2509.18758 False False 2509.18882 A Novel Mathematical Model of Protein Interactions from the Perspective of Electron Delocalization 2025-09-23 math.DG;q-bio.BM q-bio.BM https://arxiv.org/abs/2509.18882 False False 2509.18998 Bayesian Calibration and Model Assessment of Cell Migration Dynamics with Surrogate Model Integration 2025-09-23 cs.LG;math.AP;q-bio.CB;q-bio.QM q-bio.CB https://arxiv.org/abs/2509.18998 False False 2509.19253 On a Neutral Host-Virus Model with Recombination 2025-09-23 math.PR;q-bio.PE q-bio.PE https://arxiv.org/abs/2509.19253 False False 2509.19254 Exploring aperiodic, complexity and entropic brain changes during non-ordinary states of consciousness 2025-09-23 q-bio.NC q-bio.NC https://arxiv.org/abs/2509.19254 False False 2509.19290 Biochemical Network Motifs Under Periodic Forcing: A Selective Catalogue of Transfer Functions and Frequency Response Properties 2025-09-23 q-bio.MN q-bio.MN https://arxiv.org/abs/2509.19290 False False 2509.19399 Deep Clustering for Blood Cell Classification and Quantification 2025-09-23 q-bio.QM q-bio.QM https://arxiv.org/abs/2509.19399 False False 2509.19410 Meta-analysis and Topological Perturbation in Interactomic Network for Anti-opioid Addiction Drug Repurposing 2025-09-23 q-bio.MN;q-bio.QM q-bio.MN https://arxiv.org/abs/2509.19410 False False 2509.19566 Nano Bio-Agents (NBA): Small Language Model Agents for Genomics 2025-09-23 cs.AI;q-bio.GN q-bio.GN https://arxiv.org/abs/2509.19566 False False 2509.19586 A Foundation Chemical Language Model for Comprehensive Fragment-Based Drug Discovery 2025-09-23 cs.AI;cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2509.19586 False False 2509.19766 Dynamicasome: a molecular dynamics-guided and AI-driven pathogenicity prediction catalogue for all genetic mutations 2025-09-23 cs.AI;physics.bio-ph;q-bio.MN;q-bio.QM q-bio.MN https://arxiv.org/abs/2509.19766 False False 2509.20402 Transformer-Based Hematological Malignancy Prediction from Peripheral Blood Smears in a Real-World Cohort 2025-09-23 q-bio.QM q-bio.QM https://arxiv.org/abs/2509.20402 False False 2509.18480 SimpleFold: Folding Proteins is Simpler than You Think 2025-09-23 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2509.18480 False False 2509.19536 Integrating Mechanistic Modeling and Machine Learning to Study CD4+/CD8+ CAR-T Cell Dynamics with Tumor Antigen Regulation 2025-09-23 q-bio.CB;q-bio.QM q-bio.CB https://arxiv.org/abs/2509.19536 False False 2509.19536 Integrating Mechanistic Modeling and Machine Learning to Study CD4+/CD8+ CAR-T Cell Dynamics with Tumor Antigen Regulation 2025-09-23 q-bio.CB;q-bio.QM q-bio.CB https://arxiv.org/abs/2509.19536 False False 2509.20402 Transformer-Based Hematological Malignancy Prediction from Peripheral Blood Smears in a Real-World Cohort 2025-09-23 q-bio.QM q-bio.QM https://arxiv.org/abs/2509.20402 False False 2509.20402 Transformer-Based Hematological Malignancy Prediction from Peripheral Blood Smears in a Real-World Cohort 2025-09-23 q-bio.QM q-bio.QM https://arxiv.org/abs/2509.20402 False False 2509.20402 Transformer-Based Hematological Malignancy Prediction from Peripheral Blood Smears in a Real-World Cohort 2025-09-23 q-bio.QM q-bio.QM https://arxiv.org/abs/2509.20402 False False 2509.20402 Transformer-Based Hematological Malignancy Prediction from Peripheral Blood Smears in a Real-World Cohort 2025-09-23 q-bio.QM q-bio.QM https://arxiv.org/abs/2509.20402 False False 2509.17305 Rational Multi-Modal Transformers for TCR-pMHC Prediction 2025-09-22 cs.CE;q-bio.QM q-bio.QM https://arxiv.org/abs/2509.17305 False False 2509.17422 Adaptive mechanical proofreading toward faithful clonal selection 2025-09-22 physics.bio-ph;q-bio.CB;q-bio.PE q-bio.CB https://arxiv.org/abs/2509.17422 False False 2509.17448 Monitoring Nitric Oxide in Trigeminal Neuralgia Rats with a Cerium Single-Atom Nanozyme Electrochemical Biosensor 2025-09-22 physics.med-ph;physics.mtrl-sci;q-bio.BM q-bio.BM https://arxiv.org/abs/2509.17448 False False 2509.17891 Quantitative and Computational Radiobiology for Precision Radiopharmaceutical Therapies 2025-09-22 physics.med-ph;q-bio.QM q-bio.QM https://arxiv.org/abs/2509.17891 False False 2509.17924 Medical priority fusion: achieving dual optimization of sensitivity and interpretability in nipt anomaly detection 2025-09-22 cs.LG;q-bio.TO q-bio.TO https://arxiv.org/abs/2509.17924 False False 2509.18050 Why we need all the organisms: an exploration of the Monarch knowledge graph to aid mechanism discovery 2025-09-22 q-bio.QM q-bio.QM https://arxiv.org/abs/2509.18050 False False 2509.18065 Mathematical modelling of nutrient-dependent biofilm growth on medical implants 2025-09-22 q-bio.PE q-bio.PE https://arxiv.org/abs/2509.18065 False False 2509.17913 Effective decoupling of mutations and the resulting loss of biodiversity caused by environmental change 2025-09-22 physics.bio-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2509.17913 False False 2509.17948 Social influence on complex networks as a perturbation to individual behavior 2025-09-22 physics.soc-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2509.17948 False False 2509.18220 Virtual Cells: From Conceptual Frameworks to Biomedical Applications 2025-09-22 q-bio.QM q-bio.QM https://arxiv.org/abs/2509.18220 False False 2509.18222 Predator-prey models with memory and kicks: Exact solution and discrete maps with memory 2025-09-22 math.DS;physics.CD;q-bio.PE q-bio.PE https://arxiv.org/abs/2509.18222 0.7713 0.7868 True 6 6.15 False 2509.18225 Rank Ordering of Species Sensitivities to Chemicals: Discrepancies between Behavioral and Lethal Responses in Freshwater and Marine Invertebrates 2025-09-22 q-bio.QM q-bio.QM https://arxiv.org/abs/2509.18225 False False 2509.18227 Predicted decline in common bird and butterfly species despite conservation policies in Europe 2025-09-22 q-bio.PE q-bio.PE https://arxiv.org/abs/2509.18227 False False 2509.18469 Probabilistic Geometric Principal Component Analysis with application to neural data 2025-09-22 cs.LG;q-bio.NC;stat.ML q-bio.NC https://arxiv.org/abs/2509.18469 False False 2509.17854 Magnetically Guided Endothelial BioBots: A Next-Generation Strategy for Treating Complex Cerebral Aneurysms 2025-09-22 q-bio.TO q-bio.TO https://arxiv.org/abs/2509.17854 False False 2509.18408 Explicit Path CGR: Maintaining Sequence Fidelity in Geometric Representations 2025-09-22 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2509.18408 False False 2509.18228 Forest tree species classification and entropy-derived uncertainty mapping using extreme gradient boosting and Sentinel-1/2 satellite data 2025-09-22 q-bio.QM;stat.ML q-bio.QM https://arxiv.org/abs/2509.18228 False False 2509.17594 A Sensitivity Analysis Methodology for Rule-Based Stochastic Chemical Systems 2025-09-22 q-bio.MN;q-bio.QM q-bio.MN https://arxiv.org/abs/2509.17594 False False 2509.18227 Predicted decline in common bird and butterfly species despite conservation policy scenarios in Europe 2025-09-22 q-bio.PE q-bio.PE https://arxiv.org/abs/2509.18227 False False 2509.18227 Predicted decline in common bird and butterfly species despite conservation policy scenarios in Europe 2025-09-22 q-bio.PE q-bio.PE https://arxiv.org/abs/2509.18227 False False 2509.16859 The Principles of Human-like Conscious Machine 2025-09-21 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2509.16859 False False 2509.16877 A review of topological data analysis and topological deep learning in molecular sciences 2025-09-21 q-bio.BM q-bio.BM https://arxiv.org/abs/2509.16877 False False 2509.16973 Deep Learning Inductive Biases for fMRI Time Series Classification during Resting-state and Movie-watching 2025-09-21 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2509.16973 False False 2509.17147 A game played by tandem-running ants: Hint of procedural rationality 2025-09-21 econ.TH;physics.AO;physics.bio-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2509.17147 False False 2509.17224 AI-based Methods for Simulating, Sampling, and Predicting Protein Ensembles 2025-09-21 cs.LG;physics.bio-ph;q-bio.BM q-bio.BM https://arxiv.org/abs/2509.17224 False False 2509.17280 From Prediction to Understanding: Will AI Foundation Models Transform Brain Science? 2025-09-21 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2509.17280 False False 2509.18217 Stochastic Dynamics of Urban Predator-Prey Systems: Integrating Human Disturbance and Functional Responses 2025-09-21 q-bio.PE q-bio.PE https://arxiv.org/abs/2509.18217 False False 2509.17138 Analyzing Memory Effects in Large Language Models through the lens of Cognitive Psychology 2025-09-21 q-bio.NC q-bio.NC https://arxiv.org/abs/2509.17138 False False 2509.17174 Self-Supervised Discovery of Neural Circuits in Spatially Patterned Neural Responses with Graph Neural Networks 2025-09-21 cs.LG;q-bio.NC;q-bio.QM q-bio.NC https://arxiv.org/abs/2509.17174 False False 2509.17260 A tutorial on electrogastrography using low-cost hardware and open-source software 2025-09-21 q-bio.NC q-bio.NC https://arxiv.org/abs/2509.17260 False False 2509.16908 Discrete Heat Kernels on Simplicial Complexes and Its Application to Functional Brain Networks 2025-09-21 q-bio.NC;q-bio.QM q-bio.NC https://arxiv.org/abs/2509.16908 False False 2509.17260 A tutorial on electrogastrography using low-cost hardware and open-source software 2025-09-21 cs.OH;q-bio.NC;stat.AP q-bio.NC https://arxiv.org/abs/2509.17260 False False 2509.17260 A tutorial on electrogastrography using low-cost hardware and open-source software 2025-09-21 cs.OH;q-bio.NC;stat.AP q-bio.NC https://arxiv.org/abs/2509.17260 False False 2509.16486 "Comment on ""mbtransfer: Microbiome intervention analysis using transfer functions and mirror statistics"": Implementation errors, theoretical misapplication, and methodological flaws" 2025-09-20 q-bio.QM q-bio.QM https://arxiv.org/abs/2509.16486 False False 2509.16571 Enhancing Antimicrobial Molecule Prediction via Dynamic Routing Capsule Networks and Multi-Source Molecular Embeddings 2025-09-20 q-bio.QM q-bio.QM https://arxiv.org/abs/2509.16571 False False 2509.16687 Modeling the Effects of Over and Under Doses Antibiotic Treatment to Bacterial Resistance in Presence of Immune System 2025-09-20 q-bio.PE q-bio.PE https://arxiv.org/abs/2509.16687 False False 2509.16803 Efficient Brain Network Estimation with Sparse ICA in Non-Human Primate Neuroimaging 2025-09-20 q-bio.NC;stat.AP q-bio.NC https://arxiv.org/abs/2509.16803 False False 2509.18207 Securing the Language of Life: Inheritable Watermarks from DNA Language Models to Proteins 2025-09-20 q-bio.GN q-bio.GN https://arxiv.org/abs/2509.18207 False False 2509.16629 Causality-Induced Positional Encoding for Transformer-Based Representation Learning of Non-Sequential Features 2025-09-20 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2509.16629 False False 2509.16661 A self-organized compression network arrests epithelial proliferation 2025-09-20 physics.AO;physics.bio-ph;physics.soft;q-bio.CB;q-bio.TO q-bio.CB https://arxiv.org/abs/2509.16661 False False 2509.15584 Polynomial Equivalence of Extended Chemical Reaction Models 2025-09-19 cs.CC;q-bio.MN q-bio.MN https://arxiv.org/abs/2509.15584 False False 2509.15664 siDPT: siRNA Efficacy Prediction via Debiased Preference-Pair Transformer 2025-09-19 eess.SP;q-bio.GN;q-bio.QM q-bio.GN https://arxiv.org/abs/2509.15664 False False 2509.15787 A Visual Discrete Event-based Simulator for Protection of Plants against Herbivores Employed as Computational Optimization Game 2025-09-19 q-bio.PE q-bio.PE https://arxiv.org/abs/2509.15787 False False 2509.15854 Changes in Liver Fibrosis in Patients with Chronic Hepatitis B Treated with Pegylated Interferon Combined with Oral Antiviral Agents: A 48-Week Observation from a Prospective Cohort Study 2025-09-19 q-bio.TO q-bio.TO https://arxiv.org/abs/2509.15854 False False 2509.15911 The evolution of asymmetrical regulation of physiology is central to aging 2025-09-19 q-bio.PE q-bio.PE https://arxiv.org/abs/2509.15911 False False 2509.16133 A Unified and Predictive Measure of Functional Diversity 2025-09-19 q-bio.PE q-bio.PE https://arxiv.org/abs/2509.16133 False False 2509.16284 Temporally staggered cropping co-benefits beneficial insects and pest control globally 2025-09-19 q-bio.PE q-bio.PE https://arxiv.org/abs/2509.16284 False False 2509.16385 Parameter variability can produce heavy tails in a model for the spatial distribution of settling organisms 2025-09-19 q-bio.PE;stat.AP q-bio.PE https://arxiv.org/abs/2509.16385 False False 2509.16405 Ordered Leaf Attachment (OLA) Vectors can Identify Reticulation Events even in Multifurcated Trees 2025-09-19 cs.DS;math.CO;q-bio.PE q-bio.PE https://arxiv.org/abs/2509.16405 False False 2510.13815 A Two-Feature Quantitative EEG Index of Pediatric Epilepsy Severity: External Pre-Validation on CHB-MIT and Roadmap to Dravet Cohorts 2025-09-19 q-bio.NC q-bio.NC https://arxiv.org/abs/2510.13815 False False 2510.13816 GQVis: A Dataset of Genomics Data Questions and Visualizations for Generative AI 2025-09-19 cs.AI;cs.HC;cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2510.13816 False False 2509.16328 The Role of High-Performance GPU Resources in Large Language Model Based Radiology Imaging Diagnosis 2025-09-19 cs.CL;eess.IV;physics.med-ph;q-bio.TO q-bio.TO https://arxiv.org/abs/2509.16328 False False 2509.16070 A Hypothesis-First Framework for Mechanistic Modeling in Neuroimaging 2025-09-19 q-bio.NC;q-bio.QM q-bio.NC https://arxiv.org/abs/2509.16070 False False 2509.15832 Overcoming Output Dimension Collapse: When Sparsity Enables Zero-shot Brain-to-Image Reconstruction at Small Data Scales 2025-09-19 q-bio.NC q-bio.NC https://arxiv.org/abs/2509.15832 False False 2509.15748 Hybrid Lie semi-group and cascade structures for the generalized Gaussian derivative model for visual receptive fields 2025-09-19 cs.CV;q-bio.NC q-bio.NC https://arxiv.org/abs/2509.15748 False False 2509.16301 TF-DWGNet: A Directed Weighted Graph Neural Network with Tensor Fusion for Multi-Omics Cancer Subtype Classification 2025-09-19 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2509.16301 False False 2509.15796 Monte Carlo Tree Diffusion with Multiple Experts for Protein Design 2025-09-19 cs.AI;cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2509.15796 False False 2509.15832 Overcoming Output Dimension Collapse: When Sparsity Enables Zero-shot Brain-to-Image Reconstruction at Small Data Scales 2025-09-19 q-bio.NC q-bio.NC https://arxiv.org/abs/2509.15832 False False 2509.15832 Overcoming Output Dimension Collapse: When Sparsity Enables Zero-shot Brain-to-Image Reconstruction at Small Data Scales 2025-09-19 q-bio.NC q-bio.NC https://arxiv.org/abs/2509.15832 False False 2509.16301 TF-DWGNet: A Directed Weighted Graph Neural Network with Tensor Fusion for Multi-Omics Cancer Subtype Classification 2025-09-19 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2509.16301 False False 2509.16301 TF-DWGNet: A Directed Weighted Graph Neural Network with Tensor Fusion for Multi-Omics Cancer Subtype Classification 2025-09-19 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2509.16301 False False 2509.15429 Random Matrix Theory-guided sparse PCA for single-cell RNA-seq data 2025-09-18 cs.LG;physics.bio-ph;q-bio.QM q-bio.QM https://arxiv.org/abs/2509.15429 False False 2509.14498 Data coarse graining can improve model performance 2025-09-18 cs.LG;physics.dis-nn;physics.stat-mech;q-bio.NC;stat.ML q-bio.NC https://arxiv.org/abs/2509.14498 False False 2509.14827 Template-Based Cortical Surface Reconstruction with Minimal Energy Deformation 2025-09-18 cs.AI;cs.CV;cs.LG;q-bio.NC;stat.ML q-bio.NC https://arxiv.org/abs/2509.14827 False False 2509.14862 Modelling species distributions using remote sensing predictors: Comparing Dynamic Habitat Index and LULC 2025-09-18 q-bio.PE;q-bio.QM q-bio.PE https://arxiv.org/abs/2509.14862 False False 2509.14910 Dynamic effects of electric field in hybrid coupling thermosensitive neuronal network 2025-09-18 physics.CD;q-bio.NC q-bio.NC https://arxiv.org/abs/2509.14910 False False 2509.15338 Epidemic amplification by correlated superspreading 2025-09-18 q-bio.PE q-bio.PE https://arxiv.org/abs/2509.15338 False False 2509.15344 Modeling Adaptive Tracking of Predictable Stimuli in Electric Fish 2025-09-18 cs.SY;eess.SY;q-bio.NC q-bio.NC https://arxiv.org/abs/2509.15344 False False 2509.15371 KoMbine: Propagating Statistical and Systematic Errors to Kaplan--Meier Curves 2025-09-18 q-bio.QM;stat.ME q-bio.QM https://arxiv.org/abs/2509.15371 False False 2509.15460 Incorporating Visual Cortical Lateral Connection Properties into CNN: Recurrent Activation and Excitatory-Inhibitory Separation 2025-09-18 cs.AI;cs.CV;q-bio.NC q-bio.NC https://arxiv.org/abs/2509.15460 False False 2509.19351 The Impact of Structural Changes on Learning Capacity in the Fly Olfactory Neural Circuit 2025-09-18 cs.AI;cs.LG;cs.NE;q-bio.NC q-bio.NC https://arxiv.org/abs/2509.19351 False False 2509.14788 Structure-Aware Contrastive Learning with Fine-Grained Binding Representations for Drug Discovery 2025-09-18 cs.AI;cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2509.14788 False False 2509.15429 Random Matrix Theory-guided sparse PCA for single-cell RNA-seq data 2025-09-18 cs.LG;physics.bio-ph;q-bio.QM q-bio.QM https://arxiv.org/abs/2509.15429 False False 2509.15328 Kuramoto Orientation Diffusion Models 2025-09-18 cs.CV;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2509.15328 False False 2509.15328 Kuramoto Orientation Diffusion Models 2025-09-18 cs.CV;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2509.15328 False False 2509.14910 Dynamic effects of electric field in hybrid coupling thermosensitive neuronal network 2025-09-18 physics.CD;q-bio.NC q-bio.NC https://arxiv.org/abs/2509.14910 False False 2509.14910 Dynamic effects of electric field in hybrid coupling thermosensitive neuronal network 2025-09-18 physics.CD;q-bio.NC q-bio.NC https://arxiv.org/abs/2509.14910 False False 2509.13612 Rest2Visual: Predicting Visually Evoked fMRI from Resting-State Scans 2025-09-17 cs.CV;q-bio.NC q-bio.NC https://arxiv.org/abs/2509.13612 False False 2509.13867 Plasticity-induced multistability on fast and slow timescales enables optimal information encoding and spontaneous sequence discrimination 2025-09-17 physics.stat-mech;q-bio.NC q-bio.NC https://arxiv.org/abs/2509.13867 False False 2509.14029 Deep Learning-Driven Peptide Classification in Biological Nanopores 2025-09-17 cs.LG;eess.SP;physics.comp-ph;q-bio.BM q-bio.BM https://arxiv.org/abs/2509.14029 False False 2509.14037 PhenoGnet: A Graph-Based Contrastive Learning Framework for Disease Similarity Prediction 2025-09-17 cs.AI;cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2509.14037 False False 2509.14118 Multi-Source Neural Activity Indices and Spatial Filters for EEG/MEG Inverse Problem: An Extension to MNE-Python 2025-09-17 math.OC;q-bio.NC q-bio.NC https://arxiv.org/abs/2509.14118 False False 2509.14167 Deconstructing Intraocular Pressure: A Non-invasive Multi-Stage Probabilistic Inverse Framework 2025-09-17 cs.LG;q-bio.QM;stat.AP;stat.ME q-bio.QM https://arxiv.org/abs/2509.14167 False False 2509.14360 Embodied sensorimotor control: computational modeling of the neural control of movement 2025-09-17 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2509.14360 False False 2509.14418 Theoretical Note: The Relation Between Structure and Dynamics in Psychological Networks of Attitudes 2025-09-17 q-bio.NC q-bio.NC https://arxiv.org/abs/2509.14418 False False 2509.14446 Mouse vs. AI: A Neuroethological Benchmark for Visual Robustness and Neural Alignment 2025-09-17 q-bio.NC q-bio.NC https://arxiv.org/abs/2509.14446 False False 2509.14455 Charting trajectories of human thought using large language models 2025-09-17 q-bio.NC q-bio.NC https://arxiv.org/abs/2509.14455 False False 2509.14468 A generative model of function growth explains hidden self-similarities across biological and social systems 2025-09-17 physics.AO;physics.bio-ph;physics.soc-ph;physics.stat-mech;q-bio.PE q-bio.PE https://arxiv.org/abs/2509.14468 False False 2509.16250 A study on Deep Convolutional Neural Networks, transfer learning, and Mnet model for Cervical Cancer Detection 2025-09-17 cs.AI;cs.CV;q-bio.TO q-bio.TO https://arxiv.org/abs/2509.16250 False False 2509.16251 R-Net: A Reliable and Resource-Efficient CNN for Colorectal Cancer Detection with XAI Integration 2025-09-17 cs.AI;cs.CV;q-bio.TO q-bio.TO https://arxiv.org/abs/2509.16251 False False 2509.16254 Imaging Modalities-Based Classification for Lung Cancer Detection 2025-09-17 cs.AI;q-bio.TO q-bio.TO https://arxiv.org/abs/2509.16254 False False 2509.16255 RootletSeg: Deep learning method for spinal rootlets segmentation across MRI contrasts 2025-09-17 eess.IV;physics.med-ph;q-bio.TO q-bio.TO https://arxiv.org/abs/2509.16255 False False 2509.21346 Spiking Neural Networks for Mental Workload Classification with a Multimodal Approach 2025-09-17 cs.LG;cs.NE;q-bio.BM q-bio.BM https://arxiv.org/abs/2509.21346 False False 2509.13875 Personalized Detection of Stress via hdrEEG: Linking Neuro-markers to Cortisol, HRV, and Self-Report 2025-09-17 q-bio.NC q-bio.NC https://arxiv.org/abs/2509.13875 False False 2509.14166 Reaction-diffusion models of invasive tree pest spread: quantifying the expansion of oak processionary moth in the UK 2025-09-17 q-bio.PE;q-bio.QM q-bio.PE https://arxiv.org/abs/2509.14166 False False 2509.16253 "Quantum-like representation of neuronal networks' activity: modeling ""mental entanglement""" 2025-09-17 physics.quant-ph;q-bio.NC q-bio.NC https://arxiv.org/abs/2509.16253 False False 2509.14053 Trade-offs between structural richness and communication efficiency in music network representations 2025-09-17 cs.SD;eess.AS;physics.soc-ph;q-bio.NC q-bio.NC https://arxiv.org/abs/2509.14053 False False 2509.14053 Trade-offs between structural richness and communication efficiency in music network representations 2025-09-17 cs.SD;eess.AS;physics.soc-ph;q-bio.NC q-bio.NC https://arxiv.org/abs/2509.14053 False False 2509.14418 Theoretical Note: On the Practical Uses of Mathematical Theory for Attitude Research 2025-09-17 q-bio.NC q-bio.NC https://arxiv.org/abs/2509.14418 False False 2509.14118 Multi-Source Neural Activity Indices for EEG/MEG Localization: A Two-Stage Spatial Filtering Framework and Extension to MNE-Python 2025-09-17 math.OC;q-bio.NC q-bio.NC https://arxiv.org/abs/2509.14118 False False 2509.14118 Multi-Source Neural Activity Indices for EEG/MEG Localization: A Two-Stage Spatial Filtering Framework and Extension to MNE-Python 2025-09-17 math.OC;q-bio.NC q-bio.NC https://arxiv.org/abs/2509.14118 False False 2509.16255 Segmentation of spinal rootlets across MRI contrasts with RootletSeg 2025-09-17 eess.IV;physics.med-ph;q-bio.TO q-bio.TO https://arxiv.org/abs/2509.16255 False False 2509.16255 Segmentation of spinal rootlets across MRI contrasts with RootletSeg 2025-09-17 eess.IV;physics.med-ph;q-bio.TO q-bio.TO https://arxiv.org/abs/2509.16255 False False 2509.14053 Trade-offs between structural richness and perceptual robustness in music network representations 2025-09-17 cs.SD;eess.AS;physics.soc-ph;q-bio.NC q-bio.NC https://arxiv.org/abs/2509.14053 False False 2509.14053 Trade-offs between structural richness and perceptual robustness in music network representations 2025-09-17 cs.SD;eess.AS;physics.soc-ph;q-bio.NC q-bio.NC https://arxiv.org/abs/2509.14053 False False 2509.12600 A Multimodal Foundation Model to Enhance Generalizability and Data Efficiency for Pan-cancer Prognosis Prediction 2025-09-16 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2509.12600 False False 2509.12631 An exact tau-leaping method 2025-09-16 math.PR;q-bio.MN q-bio.MN https://arxiv.org/abs/2509.12631 False False 2509.12655 The Inhibition of B16-F10 Mouse Melanoma Cell Proliferation in Increased Concentration Levels of Theophylline 2025-09-16 q-bio.CB q-bio.CB https://arxiv.org/abs/2509.12655 False False 2509.12732 A Novel Recurrent Neural Network Framework for Prediction and Treatment of Oncogenic Mutation Progression 2025-09-16 cs.CL;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2509.12732 False False 2509.12873 Emergent complexity and rhythms in evoked and spontaneous dynamics of human whole-brain models after tuning through analysis tools 2025-09-16 cs.DC;physics.comp-ph;q-bio.NC q-bio.NC https://arxiv.org/abs/2509.12873 False False 2509.12915 Synthetic Protein-Ligand Complex Generation for Deep Molecular Docking 2025-09-16 q-bio.BM q-bio.BM https://arxiv.org/abs/2509.12915 False False 2509.12953 Spatiotemporal graph neural process for reconstruction, extrapolation, and classification of cardiac trajectories 2025-09-16 cs.LG;cs.SY;eess.SY;q-bio.QM q-bio.QM https://arxiv.org/abs/2509.12953 False False 2509.12976 SHREC 2025: Protein surface shape retrieval including electrostatic potential 2025-09-16 cs.CV;q-bio.BM q-bio.BM https://arxiv.org/abs/2509.12976 False False 2509.13044 ORCA: A Comprehensive AI-Driven Platform for Digital Pathology Analysis and Biomarker Discovery 2025-09-16 q-bio.QM q-bio.QM https://arxiv.org/abs/2509.13044 False False 2509.13216 Flow-Based Fragment Identification via Binding Site-Specific Latent Representations 2025-09-16 cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2509.13216 False False 2509.13294 Accelerating Protein Molecular Dynamics Simulation with DeepJump 2025-09-16 cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2509.13294 0.7454 0.7286 True 6 7.05 False 2509.13372 Generative AI Pipeline for Interactive Prompt-driven 2D-to-3D Vascular Reconstruction for Fontan Geometries from Contrast-Enhanced X-Ray Fluoroscopy Imaging 2025-09-16 cs.AI;cs.CV;cs.ET;eess.IV;q-bio.QM q-bio.QM https://arxiv.org/abs/2509.13372 False False 2509.13376 Unleashing the power of computational insights in revealing the complexity of biological systems in the new era of spatial multi-omics 2025-09-16 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2509.13376 False False 2509.13459 Why all roads don't lead to Rome: Representation geometry varies across the human visual cortical hierarchy 2025-09-16 cs.LG;cs.NE;q-bio.NC q-bio.NC https://arxiv.org/abs/2509.13459 False False 2509.13556 Collective multicellular patterns arising from cadherin-linked cytoskeletal domains 2025-09-16 physics.bio-ph;q-bio.CB q-bio.CB https://arxiv.org/abs/2509.13556 False False 2509.13428 Autonomous Reporting of Normal Chest X-rays by Artificial Intelligence in the United Kingdom. Can We Take the Human Out of the Loop? 2025-09-16 cs.CV;eess.IV;q-bio.PE q-bio.PE https://arxiv.org/abs/2509.13428 False False 2509.16238 Evolvable Graph Diffusion Optimal Transport with Pattern-Specific Alignment for Brain Connectome Modeling 2025-09-16 cs.GR;q-bio.NC q-bio.NC https://arxiv.org/abs/2509.16238 False False 2509.18153 A deep reinforcement learning platform for antibiotic discovery 2025-09-16 cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2509.18153 False False 2510.00010 Computational Advances in Taste Perception: From Ion Channels to Neural Coding 2025-09-16 q-bio.NC q-bio.NC https://arxiv.org/abs/2510.00010 False False 2510.00011 Robust State-space Reconstruction of Brain Dynamics via Bootstrap Monte Carlo SSA 2025-09-16 q-bio.NC q-bio.NC https://arxiv.org/abs/2510.00011 False False 2509.13300 AmpliconHunter: A Scalable Tool for PCR Amplicon Prediction from Microbiome Samples 2025-09-16 q-bio.GN q-bio.GN https://arxiv.org/abs/2509.13300 False False 2509.13290 Uchimata: a toolkit for visualization of 3D genome structures on the web and in computational notebooks 2025-09-16 q-bio.GN q-bio.GN https://arxiv.org/abs/2509.13290 False False 2509.13273 Bioluminescence in turbulence: intermittent straining lights up dinoflagellates 2025-09-16 physics.flu-dyn;q-bio.CB q-bio.CB https://arxiv.org/abs/2509.13273 False False 2509.14287 Property-Isometric Variational Autoencoders for Sequence Modeling and Design 2025-09-16 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2509.14287 False False 2509.13481 Complex-valued Phase Synchrony Reveals Directional Coupling in FMRI and Tracks Medication Effects 2025-09-16 q-bio.NC q-bio.NC https://arxiv.org/abs/2509.13481 False False 2509.12783 Fast reconstruction of degenerate populations of conductance-based neuron models from spike times 2025-09-16 cs.LG;math.DS;q-bio.NC;stat.ML q-bio.NC https://arxiv.org/abs/2509.12783 False False 2509.12873 Emergent complexity and rhythms in evoked and spontaneous dynamics of human whole-brain models after tuning through analysis tools 2025-09-16 cs.DC;physics.comp-ph;q-bio.NC q-bio.NC https://arxiv.org/abs/2509.12873 False False 2509.12873 Emergent complexity and rhythms in evoked and spontaneous dynamics of human whole-brain models after tuning through analysis tools 2025-09-16 cs.DC;physics.comp-ph;q-bio.NC q-bio.NC https://arxiv.org/abs/2509.12873 False False 2509.12783 Fast reconstruction of degenerate populations of conductance-based neuron models from spike times 2025-09-16 cs.LG;math.DS;q-bio.NC;stat.ML q-bio.NC https://arxiv.org/abs/2509.12783 False False 2509.12783 Fast reconstruction of degenerate populations of conductance-based neuron models from spike times 2025-09-16 cs.LG;math.DS;q-bio.NC;stat.ML q-bio.NC https://arxiv.org/abs/2509.12783 False False 2510.00011 Robust State-space Reconstruction of Brain Dynamics via Bootstrap Monte Carlo SSA 2025-09-16 q-bio.NC q-bio.NC https://arxiv.org/abs/2510.00011 False False 2510.00011 Robust State-space Reconstruction of Brain Dynamics via Bootstrap Monte Carlo SSA 2025-09-16 q-bio.NC q-bio.NC https://arxiv.org/abs/2510.00011 False False 2509.11493 Drug Repurposing Using Deep Embedded Clustering and Graph Neural Networks 2025-09-15 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2509.11493 False False 2509.11530 Residual Gaze Behavior During Navigation in Blindness and Low Vision 2025-09-15 q-bio.NC q-bio.NC https://arxiv.org/abs/2509.11530 False False 2509.11764 Fundamental limits on taming infectious disease epidemics 2025-09-15 cs.SY;eess.SY;math.OC;physics.soc-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2509.11764 False False 2509.11782 Multimodal Regression for Enzyme Turnover Rates Prediction 2025-09-15 cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2509.11782 False False 2509.11545 Representational drift under spontaneous activity -- self-organized criticality enhances representational reliability 2025-09-15 q-bio.NC q-bio.NC https://arxiv.org/abs/2509.11545 False False 2509.12131 Neural networks for learning macroscopic chemotactic sensitivity from microscopic models 2025-09-15 physics.bio-ph;q-bio.QM q-bio.QM https://arxiv.org/abs/2509.12131 False False 2509.12293 RNA-binding antiterminators: regulation of metabolism and pathogenicity in bacteria 2025-09-15 q-bio.MN q-bio.MN https://arxiv.org/abs/2509.12293 False False 2509.12409 An Assembly-Line Mechanism for In-Vitro Encapsulation of Fragmented Cargo in Virus-Like Particles 2025-09-15 physics.soft;q-bio.QM;q-bio.SC q-bio.QM https://arxiv.org/abs/2509.12409 False False 2509.12428 MHASS: Microbiome HiFi Amplicon Sequencing Simulator 2025-09-15 q-bio.GN q-bio.GN https://arxiv.org/abs/2509.12428 False False 2509.12460 Computational design of intrinsically disordered proteins 2025-09-15 q-bio.BM q-bio.BM https://arxiv.org/abs/2509.12460 False False 2509.13360 PREDICT-GBM: Platform for Robust Evaluation and Development of Individualized Computational Tumor Models in Glioblastoma 2025-09-15 cs.CV;cs.LG;eess.IV;q-bio.QM q-bio.QM https://arxiv.org/abs/2509.13360 False False 2509.13476 A Geometric Graph-Based Deep Learning Model for Drug-Target Affinity Prediction 2025-09-15 cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2509.13476 False False 2509.16232 Emotions are Recognized Patterns of Cognitive Activities 2025-09-15 cs.HC;q-bio.NC q-bio.NC https://arxiv.org/abs/2509.16232 False False 2509.12073 CEP-IP: An Explainable Framework for Cell Subpopulation Identification in Single-cell Transcriptomics 2025-09-15 q-bio.GN;q-bio.QM q-bio.GN https://arxiv.org/abs/2509.12073 False False 2509.21340 Cycle is All You Need: More Is Different 2025-09-15 cs.AI;cs.LG;cs.NE;q-bio.NC q-bio.NC https://arxiv.org/abs/2509.21340 False False 2509.11582 When Purple Perceived Only at Fixation: A Fixation and Distance-Dependent Color Illusion 2025-09-15 physics.optics;q-bio.NC q-bio.NC https://arxiv.org/abs/2509.11582 False False 2509.12162 Quantifying Mental States in Work Environment: Mathematical Perspectives 2025-09-15 q-bio.NC q-bio.NC https://arxiv.org/abs/2509.12162 False False 2509.22675 A consistent SIR model on time scales with exact solution 2025-09-15 math.DS;physics.soc-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2509.22675 False False 2509.13360 PREDICT-GBM: A multi-center platform to advance personalized glioblastoma radiotherapy planning 2025-09-15 cs.CV;cs.LG;eess.IV;q-bio.QM q-bio.QM https://arxiv.org/abs/2509.13360 False False 2509.11545 Representational drift under spontaneous activity -- self-organized criticality enhances representational reliability 2025-09-15 q-bio.NC q-bio.NC https://arxiv.org/abs/2509.11545 False False 2509.12073 CEP-IP: An Explainable Framework for Cell Subpopulation Identification in Single-cell Transcriptomics 2025-09-15 q-bio.GN;q-bio.QM q-bio.GN https://arxiv.org/abs/2509.12073 False False 2509.12073 CEP-IP: An Explainable Framework for Cell Subpopulation Identification in Single-cell Transcriptomics 2025-09-15 q-bio.GN;q-bio.QM q-bio.GN https://arxiv.org/abs/2509.12073 False False 2509.12073 CEP-IP: An Explainable Framework for Cell Subpopulation Identification in Single-cell Transcriptomics 2025-09-15 q-bio.GN;q-bio.QM q-bio.GN https://arxiv.org/abs/2509.12073 False False 2509.11023 Quantifying topological features and irregularities in zebrafish patterns using the sweeping-plane filtration 2025-09-14 q-bio.QM q-bio.QM https://arxiv.org/abs/2509.11023 False False 2509.11046 Hybrid Quantum Neural Networks for Efficient Protein-Ligand Binding Affinity Prediction 2025-09-14 cs.ET;cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2509.11046 False False 2509.11048 Bistability and Noise-Induced Evasion in Tumor-Immune Dynamics with Antigen Accumulation and Immune Escape 2025-09-14 q-bio.PE q-bio.PE https://arxiv.org/abs/2509.11048 False False 2509.11083 An Alignment-Free Explanation for Collective Predator Evasion in Moving Animal Groups 2025-09-14 q-bio.QM q-bio.QM https://arxiv.org/abs/2509.11083 False False 2509.11343 Implications of regional variations in climate change vulnerability and mitigation behaviour for social-climate dynamics 2025-09-14 physics.soc-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2509.11343 False False 2509.16229 Low-Cost Shield MicroBCI to Measure EEG with STM32 2025-09-14 q-bio.NC q-bio.NC https://arxiv.org/abs/2509.16229 False False 2509.11044 FragmentGPT: A Unified GPT Model for Fragment Growing, Linking, and Merging in Molecular Design 2025-09-14 cs.AI;cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2509.11044 False False 2509.11354 Intelligent Software System for Low-Cost, Brightfield Segmentation: Algorithmic Implementation for Cytometric Auto-Analysis 2025-09-14 cs.CV;eess.IV;q-bio.CB;q-bio.QM q-bio.CB https://arxiv.org/abs/2509.11354 False False 2509.11327 Learning to Equalize: Data-Driven Frequency-Domain Signal Recovery in Molecular Communications 2025-09-14 cs.IT;math.IT;q-bio.SC q-bio.SC https://arxiv.org/abs/2509.11327 False False 2509.10785 Temperature and Competition: Drivers in the Ecological Dynamics of Aedes Mosquitoes and Dengue Spread 2025-09-13 q-bio.PE q-bio.PE https://arxiv.org/abs/2509.10785 False False 2509.10820 Evolutionary dynamics of memory-based strategies in repeated and structured social interactions 2025-09-13 q-bio.PE q-bio.PE https://arxiv.org/abs/2509.10820 False False 2509.10891 Causal Emergence of Consciousness through Learned Multiscale Neural Dynamics in Mice 2025-09-13 q-bio.NC q-bio.NC https://arxiv.org/abs/2509.10891 False False 2509.10900 Geometric Phase of Stochastic Oscillators 2025-09-13 math.MP;physics.CD;physics.math-ph;physics.stat-mech;q-bio.NC q-bio.NC https://arxiv.org/abs/2509.10900 False False 2509.12266 Genome-Factory: An Integrated Library for Tuning, Deploying, and Interpreting Genomic Models 2025-09-13 cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2509.12266 False False 2509.10987 A High-Order Cumulant Extension of Quasi-Linkage Equilibrium 2025-09-13 q-bio.PE;stat.CO q-bio.PE https://arxiv.org/abs/2509.10987 False False 2509.10871 Optimal message passing for molecular prediction is simple, attentive and spatial 2025-09-13 cs.AI;cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2509.10871 False False 2509.12266 Genome-Factory: A Library for Tuning, Deploying, and Interpreting Genomic Foundation Models 2025-09-13 cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2509.12266 False False 2509.12266 Genome-Factory: A Library for Tuning, Deploying, and Interpreting Genomic Foundation Models 2025-09-13 cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2509.12266 False False 2509.10046 The nature of alpha modulation through neurofeedback 2025-09-12 q-bio.NC q-bio.NC https://arxiv.org/abs/2509.10046 False False 2509.10369 Data distribution impacts the performance and generalisability of contrastive learning-based foundation models of electrocardiograms 2025-09-12 cs.AI;cs.LG;eess.SP;q-bio.TO q-bio.TO https://arxiv.org/abs/2509.10369 False False 2509.10410 Knotted DNA Configurations in Bacteriophage Capsids: A Liquid Crystal Theory Approach 2025-09-12 physics.soft;q-bio.BM q-bio.BM https://arxiv.org/abs/2509.10410 False False 2509.10428 Near-Hamiltonian dynamics and energy-like quantities of next-generation neural mass models 2025-09-12 math.DS;physics.class-ph;q-bio.NC q-bio.NC https://arxiv.org/abs/2509.10428 False False 2509.10660 ZapGPT: Free-form Language Prompting for Simulated Cellular Control 2025-09-12 cs.AI;cs.MA;q-bio.CB q-bio.CB https://arxiv.org/abs/2509.10660 False False 2509.12257 Behavioral-feedback SIR epidemic model: analysis and control 2025-09-12 cs.SY;eess.SY;math.DS;q-bio.PE q-bio.PE https://arxiv.org/abs/2509.12257 False False 2509.13344 Benchmarking Dimensionality Reduction Techniques for Spatial Transcriptomics 2025-09-12 cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2509.13344 False False 2509.10390 Vendi Information Gain for Active Learning and its Application to Ecology 2025-09-12 cs.IT;cs.LG;math.IT;q-bio.PE q-bio.PE https://arxiv.org/abs/2509.10390 False False 2509.10650 On a Geometry of Interbrain Networks 2025-09-12 cs.CG;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2509.10650 False False 2509.09923 Engineering Spatial and Molecular Features from Cellular Niches to Inform Predictions of Inflammatory Bowel Disease 2025-09-12 cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2509.09923 False False 2510.01201 Psychoacoustic study of simple-tone dyads: frequency ratio and pitch 2025-09-12 q-bio.NC q-bio.NC https://arxiv.org/abs/2510.01201 False False 2509.10650 On a Geometry of Interbrain Networks 2025-09-12 cs.CG;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2509.10650 False False 2509.10650 On a Geometry of Interbrain Networks 2025-09-12 cs.CG;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2509.10650 False False 2509.09152 LITcoder: A General-Purpose Library for Building and Comparing Encoding Models 2025-09-11 cs.CL;q-bio.NC q-bio.NC https://arxiv.org/abs/2509.09152 False False 2509.09181 Incomplete Reputation Information and Punishment in Indirect Reciprocity 2025-09-11 physics.soc-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2509.09181 False False 2509.09213 A novel cost-effective fabrication of a flexible neural probe for brain signal recording 2025-09-11 q-bio.NC q-bio.NC https://arxiv.org/abs/2509.09213 False False 2509.09235 Virtual staining for 3D X-ray histology of bone implants 2025-09-11 cs.AI;cs.CV;eess.IV;physics.comp-ph;q-bio.QM q-bio.QM https://arxiv.org/abs/2509.09235 False False 2509.09480 Large deviations in non-Markovian stochastic epidemics 2025-09-11 physics.stat-mech;q-bio.PE q-bio.PE https://arxiv.org/abs/2509.09480 False False 2509.09521 Coarsening model of chromosomal crossover placement 2025-09-11 physics.bio-ph;physics.soft;q-bio.SC q-bio.SC https://arxiv.org/abs/2509.09521 False False 2509.09818 Cerebellar Contributions to Action and Cognition: Prediction, Timescale, and Continuity 2025-09-11 q-bio.NC q-bio.NC https://arxiv.org/abs/2509.09818 False False 2509.10575 Gene-R1: Reasoning with Data-Augmented Lightweight LLMs for Gene Set Analysis 2025-09-11 cs.AI;q-bio.GN q-bio.GN https://arxiv.org/abs/2509.10575 False False 2509.09413 Fused Lasso Improves Accuracy of Co-occurrence Network Inference in Grouped Samples 2025-09-11 cs.LG;q-bio.PE q-bio.PE https://arxiv.org/abs/2509.09413 False False 2509.09480 Large deviations in non-Markovian stochastic epidemics 2025-09-11 physics.stat-mech;q-bio.PE q-bio.PE https://arxiv.org/abs/2509.09480 False False 2509.09181 Incomplete Reputation Information and Punishment in Indirect Reciprocity 2025-09-11 physics.soc-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2509.09181 False False 2509.09181 Incomplete Reputation Information and Punishment in Indirect Reciprocity 2025-09-11 physics.soc-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2509.09181 False False 2509.09152 LITcoder: A General-Purpose Library for Building and Comparing Encoding Models 2025-09-11 cs.CL;q-bio.NC q-bio.NC https://arxiv.org/abs/2509.09152 False False 2509.09152 LITcoder: A General-Purpose Library for Building and Comparing Encoding Models 2025-09-11 cs.CL;q-bio.NC q-bio.NC https://arxiv.org/abs/2509.09152 False False 2509.08263 A simple method to extend COBRApy dynamic FBA protocol to the metabolic simulation of communities 2025-09-10 q-bio.MN q-bio.MN https://arxiv.org/abs/2509.08263 False False 2509.08442 Spherical Brownian Bridge Diffusion Models for Conditional Cortical Thickness Forecasting 2025-09-10 cs.AI;cs.CV;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2509.08442 False False 2509.08492 First highly pathogenic avian influenza outbreak in a commercial farm in Brazil: outbreak timeline, control actions, risk analysis, and transmission modeling 2025-09-10 q-bio.PE q-bio.PE https://arxiv.org/abs/2509.08492 False False 2509.08533 System size and boundaries determine the patterning dynamics of attracting active particles 2025-09-10 physics.AO;physics.PS;physics.bio-ph;physics.soft;q-bio.CB q-bio.CB https://arxiv.org/abs/2509.08533 0.7462 0.8193 True 8 7.7 False 2509.08633 Quantifying the liquid-liquid transition in cold water/glycerol mixtures by ih-RIDME 2025-09-10 physics.chem-ph;physics.soft;q-bio.BM q-bio.BM https://arxiv.org/abs/2509.08633 False False 2509.08707 Tokenizing Loops of Antibodies 2025-09-10 cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2509.08707 False False 2509.08779 ADHDeepNet From Raw EEG to Diagnosis: Improving ADHD Diagnosis through Temporal-Spatial Processing, Adaptive Attention Mechanisms, and Explainability in Raw EEG Signals 2025-09-10 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2509.08779 False False 2509.08806 Evolution, the mother of age-related diseases 2025-09-10 q-bio.PE q-bio.PE https://arxiv.org/abs/2509.08806 False False 2509.09738 Human-AI Collaboration Increases Efficiency in Regulatory Writing 2025-09-10 cs.AI;q-bio.QM q-bio.QM https://arxiv.org/abs/2509.09738 False False 2509.09740 HypoGeneAgent: A Hypothesis Language Agent for Gene-Set Cluster Resolution Selection Using Perturb-seq Datasets 2025-09-10 cs.AI;cs.CL;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2509.09740 False False 2509.08578 Multi-modal Adaptive Estimation for Temporal Respiratory Disease Outbreak 2025-09-10 cs.LG;q-bio.PE;q-bio.QM q-bio.PE https://arxiv.org/abs/2509.08578 False False 2509.08707 Tokenizing Loops of Antibodies 2025-09-10 cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2509.08707 False False 2509.08492 First highly pathogenic avian influenza outbreak in a commercial farm in Brazil: outbreak timeline, control actions, risk analysis, and transmission modeling 2025-09-10 q-bio.PE q-bio.PE https://arxiv.org/abs/2509.08492 False False 2509.08492 First highly pathogenic avian influenza outbreak in a commercial farm in Brazil: outbreak timeline, control actions, risk analysis, and transmission modeling 2025-09-10 q-bio.PE q-bio.PE https://arxiv.org/abs/2509.08492 False False 2509.07458 Unveiling Biological Models Through Turing Patterns 2025-09-09 math.AP;physics.bio-ph;q-bio.BM;q-bio.CB q-bio.BM https://arxiv.org/abs/2509.07458 False False 2509.07516 Magnetic Resonance Imaging Virtual Liver Biopsy Using Radiomics Analysis for the Assessment of Chronic Liver Disease 2025-09-09 q-bio.TO q-bio.TO https://arxiv.org/abs/2509.07516 False False 2509.07712 A mathematical model of vaccine hesitancy: Analysing the impact of political trends and the interaction across age and education groups in the USA 2025-09-09 q-bio.PE q-bio.PE https://arxiv.org/abs/2509.07712 False False 2509.07723 BDPM: A Machine Learning-Based Feature Extractor for Parkinson's Disease Classification via Gut Microbiota Analysis 2025-09-09 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2509.07723 False False 2509.08020 Towards Scalable Proteomics: Opportunistic SMC Samplers on HTCondor 2025-09-09 cs.DC;q-bio.QM;stat.CO q-bio.QM https://arxiv.org/abs/2509.08020 False False 2509.08167 Optimizing information flow in Gene Regulatory Networks: a geometric perspective 2025-09-09 cs.IT;math.IT;q-bio.MN q-bio.MN https://arxiv.org/abs/2509.08167 False False 2509.08188 ArtifactGen: Benchmarking WGAN-GP vs Diffusion for Label-Aware EEG Artifact Synthesis 2025-09-09 cs.LG;cs.NE;q-bio.NC q-bio.NC https://arxiv.org/abs/2509.08188 False False 2509.09718 A Comprehensive Pipeline for Aortic Segmentation and Shape Analysis 2025-09-09 eess.IV;q-bio.TO q-bio.TO https://arxiv.org/abs/2509.09718 False False 2509.10552 Trial-Level Time-frequency EEG Desynchronization as a Neural Marker of Pain 2025-09-09 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2509.10552 False False 2509.10556 COVID-BLUeS -- A Prospective Study on the Value of AI in Lung Ultrasound Analysis 2025-09-09 cs.CE;q-bio.TO q-bio.TO https://arxiv.org/abs/2509.10556 False False 2509.10557 HiLWS: A Human-in-the-Loop Weak Supervision Framework for Curating Clinical and Home Video Data for Neurological Assessment 2025-09-09 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2509.10557 False False 2509.08179 Computational modelling of Parkinson's disease: A multiscale approach with deep brain stimulation and stochastic noise 2025-09-09 q-bio.NC q-bio.NC https://arxiv.org/abs/2509.08179 False False 2509.07627 LSMTCR: A Scalable Multi-Architecture Model for Epitope-Specific T Cell Receptor de novo Design 2025-09-09 cs.CE;q-bio.BM q-bio.BM https://arxiv.org/abs/2509.07627 False False 2509.10554 MAE-SAM2: Mask Autoencoder-Enhanced SAM2 for Clinical Retinal Vascular Leakage Segmentation 2025-09-09 eess.IV;q-bio.TO q-bio.TO https://arxiv.org/abs/2509.10554 False False 2509.07357 Finding low-complexity DNA sequences with longdust 2025-09-09 q-bio.GN q-bio.GN https://arxiv.org/abs/2509.07357 False False 2509.08077 Self-organized hyperuniformity in a minimal model of population dynamics 2025-09-09 physics.stat-mech;q-bio.PE q-bio.PE https://arxiv.org/abs/2509.08077 False False 2510.14984 The mechanics of the $\textit{Less In More Out}$ artificial heart: modeling fabric-based soft robotic devices 2025-09-09 physics.comp-ph;q-bio.TO q-bio.TO https://arxiv.org/abs/2510.14984 False False 2509.10554 MAE-SAM2: Mask Autoencoder-Enhanced SAM2 for Clinical Retinal Vascular Leakage Segmentation 2025-09-09 cs.CV;eess.IV;q-bio.TO q-bio.TO https://arxiv.org/abs/2509.10554 False False 2509.10554 MAE-SAM2: Mask Autoencoder-Enhanced SAM2 for Clinical Retinal Vascular Leakage Segmentation 2025-09-09 cs.CV;eess.IV;q-bio.TO q-bio.TO https://arxiv.org/abs/2509.10554 False False 2509.08077 Self-organized hyperuniformity in a minimal model of population dynamics 2025-09-09 physics.stat-mech;q-bio.PE q-bio.PE https://arxiv.org/abs/2509.08077 False False 2509.08077 Self-organized hyperuniformity in a minimal model of population dynamics 2025-09-09 physics.stat-mech;q-bio.PE q-bio.PE https://arxiv.org/abs/2509.08077 False False 2509.06268 Fast-Slow Analysis of a Model For the Stimulation of Enzymatic Activity by a Competitive Inhibitor 2025-09-08 q-bio.MN q-bio.MN https://arxiv.org/abs/2509.06268 False False 2509.06271 Computational predictions of nutrient precipitation for intensified cell 1 culture media via amino acid solution thermodynamics 2025-09-08 physics.bio-ph;q-bio.BM;q-bio.QM q-bio.BM https://arxiv.org/abs/2509.06271 False False 2509.06329 Towards scalable organ level 3D plant segmentation: Bridging the data algorithm computing gap 2025-09-08 cs.CV;q-bio.QM q-bio.QM https://arxiv.org/abs/2509.06329 False False 2509.06503 An AI system to help scientists write expert-level empirical software 2025-09-08 cs.AI;q-bio.QM q-bio.QM https://arxiv.org/abs/2509.06503 False False 2509.06735 Data-driven discovery of dynamical models in biology 2025-09-08 q-bio.QM q-bio.QM https://arxiv.org/abs/2509.06735 False False 2509.06891 Tensor Network based Gene Regulatory Network Inference for Single-Cell Transcriptomic Data 2025-09-08 physics.quant-ph;q-bio.MN q-bio.MN https://arxiv.org/abs/2509.06891 False False 2509.06893 Nanobot Algorithms for Treatment of Diffuse Cancer 2025-09-08 cs.MA;cs.RO;q-bio.QM q-bio.QM https://arxiv.org/abs/2509.06893 False False 2509.07204 Predicting effect of novel treatments using molecular pathways and real-world data 2025-09-08 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2509.07204 False False 2509.08013 Mathematical Discovery of Potential Therapeutic Targets: Application to Rare Melanomas 2025-09-08 q-bio.QM q-bio.QM https://arxiv.org/abs/2509.08013 False False 2509.06810 Reward function compression facilitates goal-dependent reinforcement learning 2025-09-08 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2509.06810 False False 2509.06465 CAME-AB: Cross-Modality Attention with Mixture-of-Experts for Antibody Binding Site Prediction 2025-09-08 cs.CE;cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2509.06465 False False 2509.08006 Exact conditions for evolutionary stability in indirect reciprocity under noise 2025-09-08 cs.GT;q-bio.PE q-bio.PE https://arxiv.org/abs/2509.08006 False False 2509.06426 Musculoskeletal simulation of limb movement biomechanics in Drosophila melanogaster 2025-09-08 cs.AI;cs.LG;cs.RO;q-bio.NC q-bio.NC https://arxiv.org/abs/2509.06426 False False 2509.10547 Biomarkers of brain diseases 2025-09-08 cs.AI;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2509.10547 False False 2509.10549 How Easterners and Westerners perceive ADHD differently 2025-09-08 q-bio.NC q-bio.NC https://arxiv.org/abs/2509.10549 False False 2509.21332 Future of Brain Health: From Developmental Insights to Clinical Translation 2025-09-08 q-bio.NC q-bio.NC https://arxiv.org/abs/2509.21332 False False 2509.06849 Canonicalization of the E value from BLAST similarity search -- dissimilarity measure and distance function for a metric space of protein sequences 2025-09-08 q-bio.BM;q-bio.QM q-bio.BM https://arxiv.org/abs/2509.06849 False False 2509.07237 Normative Modelling in Neuroimaging: A Practical Guide for Researchers 2025-09-08 eess.IV;q-bio.NC q-bio.NC https://arxiv.org/abs/2509.07237 False False 2509.08013 Mathematical Discovery of Potential Therapeutic Targets: Application to Rare Melanomas 2025-09-08 q-bio.QM q-bio.QM https://arxiv.org/abs/2509.08013 False False 2509.10547 Pursuit of biomarkers of brain diseases: Beyond cohort comparisons 2025-09-08 cs.AI;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2509.10547 False False 2509.10547 Pursuit of biomarkers of brain diseases: Beyond cohort comparisons 2025-09-08 cs.AI;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2509.10547 False False 2509.10547 Pursuit of biomarkers of brain diseases: Beyond cohort comparisons 2025-09-08 cs.AI;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2509.10547 False False 2509.10547 Pursuit of biomarkers of brain diseases: Beyond cohort comparisons 2025-09-08 cs.AI;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2509.10547 False False 2509.06503 An AI system to help scientists write expert-level empirical software 2025-09-08 cs.AI;q-bio.QM q-bio.QM https://arxiv.org/abs/2509.06503 False False 2509.06503 An AI system to help scientists write expert-level empirical software 2025-09-08 cs.AI;q-bio.QM q-bio.QM https://arxiv.org/abs/2509.06503 False False 2509.06503 An AI system to help scientists write expert-level empirical software 2025-09-08 cs.AI;q-bio.QM q-bio.QM https://arxiv.org/abs/2509.06503 False False 2509.06503 An AI system to help scientists write expert-level empirical software 2025-09-08 cs.AI;q-bio.QM q-bio.QM https://arxiv.org/abs/2509.06503 False False 2509.21332 Future of Brain Health: From Developmental Insights to Clinical Translation 2025-09-08 q-bio.NC q-bio.NC https://arxiv.org/abs/2509.21332 False False 2509.21332 Future of Brain Health: From Developmental Insights to Clinical Translation 2025-09-08 q-bio.NC q-bio.NC https://arxiv.org/abs/2509.21332 False False 2509.06849 Toward the regularization of E value from BLAST similarity search into a dissimilarity measure as distance function, and the metrication of protein sequence space 2025-09-08 q-bio.BM;q-bio.QM q-bio.BM https://arxiv.org/abs/2509.06849 False False 2509.06849 Toward the regularization of E value from BLAST similarity search into a dissimilarity measure as distance function, and the metrication of protein sequence space 2025-09-08 q-bio.BM;q-bio.QM q-bio.BM https://arxiv.org/abs/2509.06849 False False 2509.06810 Reward function compression facilitates goal-dependent reinforcement learning 2025-09-08 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2509.06810 False False 2509.06810 Reward function compression facilitates goal-dependent reinforcement learning 2025-09-08 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2509.06810 False False 2509.06735 Data-driven discovery of dynamical models in biology 2025-09-08 q-bio.QM q-bio.QM https://arxiv.org/abs/2509.06735 False False 2509.06735 Data-driven discovery of dynamical models in biology 2025-09-08 q-bio.QM q-bio.QM https://arxiv.org/abs/2509.06735 False False 2509.06893 Nanobot Algorithms for Treatment of Diffuse Cancer 2025-09-08 cs.MA;cs.RO;q-bio.QM q-bio.QM https://arxiv.org/abs/2509.06893 False False 2509.06893 Nanobot Algorithms for Treatment of Diffuse Cancer 2025-09-08 cs.MA;cs.RO;q-bio.QM q-bio.QM https://arxiv.org/abs/2509.06893 False False 2509.06062 Dynamics of Two Species with Density-Dependent Interactions in a Mutualistic Context 2025-09-07 math.CA;math.DS;q-bio.PE q-bio.PE https://arxiv.org/abs/2509.06062 False False 2509.06113 A mother-machine microfluidic device for non-adherent mammalian cells reveals the population growth strategies 2025-09-07 physics.bio-ph;q-bio.CB q-bio.CB https://arxiv.org/abs/2509.06113 False False 2509.06234 Minimum-Cost Synthetic Genome Planning: An Algorithmic Framework 2025-09-07 q-bio.GN q-bio.GN https://arxiv.org/abs/2509.06234 False False 2509.06192 Hybrid restricted master problem for Boolean matrix factorisation 2025-09-07 q-bio.QM q-bio.QM https://arxiv.org/abs/2509.06192 False False 2509.06062 Dynamics of Two Species with Density-Dependent Interactions in a Mutualistic Context 2025-09-07 math.CA;math.DS;q-bio.PE q-bio.PE https://arxiv.org/abs/2509.06062 False False 2509.05731 Modeling Cholera Dynamics Under Food Insecurity and Environmental Contamination: A Multi-Patch Approach 2025-09-06 math.DS;q-bio.PE q-bio.PE https://arxiv.org/abs/2509.05731 False False 2509.05807 Mosquito population suppression models with seasonality and d-concave equations 2025-09-06 math.DS;q-bio.PE q-bio.PE https://arxiv.org/abs/2509.05807 False False 2509.05846 Comparative study of Bayesian and Frequentist methods for epidemic forecasting: Insights from simulated and historical data 2025-09-06 q-bio.QM q-bio.QM https://arxiv.org/abs/2509.05846 False False 2509.07013 Machine Generalize Learning in Agent-Based Models: Going Beyond Surrogate Models for Calibration in ABMs 2025-09-06 cs.LG;q-bio.PE;stat.ME q-bio.PE https://arxiv.org/abs/2509.07013 False False 2509.07999 The Computational Foundations of Collective Intelligence 2025-09-06 cs.AI;cs.MA;cs.NE;physics.AO;physics.soc-ph;q-bio.NC q-bio.NC https://arxiv.org/abs/2509.07999 False False 2509.07009 Computational Concept of the Psyche (in Russian) 2025-09-06 cs.AI;cs.SY;eess.SY;q-bio.NC q-bio.NC https://arxiv.org/abs/2509.07009 False False 2509.12226 A Physics-Informed Neural Networks-Based Model Predictive Control Framework for $SIR$ Epidemics 2025-09-06 cs.LG;cs.SY;eess.SY;q-bio.PE q-bio.PE https://arxiv.org/abs/2509.12226 False False 2509.07013 Generalized Machine Learning for Fast Calibration of Agent-Based Epidemic Models 2025-09-06 cs.LG;q-bio.PE;stat.ME q-bio.PE https://arxiv.org/abs/2509.07013 False False 2509.04848 Pose-Free 3D Quantitative Phase Imaging of Flowing Cellular Populations 2025-09-05 cs.CV;physics.bio-ph;physics.optics;q-bio.QM q-bio.QM https://arxiv.org/abs/2509.04848 False False 2509.04850 Determining a parabolic-elliptic-elliptic system by boundary observation of its non-negative solutions under chemotaxis background 2025-09-05 math.AP;q-bio.CB;q-bio.SC q-bio.CB https://arxiv.org/abs/2509.04850 False False 2509.04939 The SChISM study: Cell-free DNA size profiles as predictors of progression in advanced carcinoma treated with immune-checkpoint inhibitors 2025-09-05 q-bio.QM q-bio.QM https://arxiv.org/abs/2509.04939 False False 2509.04995 Revealing the building blocks of tree balance: fundamental units of the Sackin and Colless Indices 2025-09-05 math.CO;q-bio.PE q-bio.PE https://arxiv.org/abs/2509.04995 False False 2509.04998 Directed Evolution of Proteins via Bayesian Optimization in Embedding Space 2025-09-05 cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2509.04998 False False 2509.05110 Elasticity and plasticity of epithelial gap closure 2025-09-05 physics.bio-ph;physics.soft;q-bio.TO q-bio.TO https://arxiv.org/abs/2509.05110 0.7604 0.8115 True 8 8.0 True 2509.05151 Network Models of Neurodegeneration: Bridging Neuronal Dynamics and Disease Progression 2025-09-05 q-bio.NC q-bio.NC https://arxiv.org/abs/2509.05151 False False 2509.05189 Resolving Tangling in Multi-Conformer Refinement via Iterative Projections 2025-09-05 math.OC;physics.comp-ph;q-bio.QM q-bio.QM https://arxiv.org/abs/2509.05189 False False 2509.05481 STL-based Optimization of Biomolecular Neural Networks for Regression and Control 2025-09-05 cs.LG;q-bio.MN;q-bio.QM q-bio.MN https://arxiv.org/abs/2509.05481 False False 2509.05517 Towards better structural models from cryo-electron microscopy data with physics-based methods 2025-09-05 q-bio.BM q-bio.BM https://arxiv.org/abs/2509.05517 False False 2509.05539 Investigating DNA words and their distributions across the tree of life 2025-09-05 q-bio.GN q-bio.GN https://arxiv.org/abs/2509.05539 False False 2509.07001 Artificial Intelligence as an Opportunity for the Science of Consciousness: A Dual-Resolution Framework 2025-09-05 q-bio.NC q-bio.NC https://arxiv.org/abs/2509.07001 False False 2509.05508 Defining and Estimating Outcomes Directly Averted by a Vaccination Program when Rollout Occurs Over Time 2025-09-05 q-bio.PE q-bio.PE https://arxiv.org/abs/2509.05508 False False 2509.05041 Dynamical Learning in Deep Asymmetric Recurrent Neural Networks 2025-09-05 cs.LG;physics.dis-nn;q-bio.NC q-bio.NC https://arxiv.org/abs/2509.05041 False False 2509.04743 Integrating upstream and downstream reciprocity stabilizes cooperator-defector coexistence in others-only public goods games 2025-09-05 cs.CY;physics.AO;physics.soc-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2509.04743 False False 2509.04718 When correcting for regression to the mean is worse than no correction at all 2025-09-05 physics.data-an;q-bio.QM;stat.ME q-bio.QM https://arxiv.org/abs/2509.04718 False False 2509.04778 TumorPred: A Computational Framework Implemented via an R/Shiny Web Application for Parameter Estimation and Sensitivity Analysis in Compartmental Brain Modeling 2025-09-05 math.DS;q-bio.QM q-bio.QM https://arxiv.org/abs/2509.04778 0.7695 0.7709 True 6 6.75 False 2509.04778 TumorPred: A Computational Framework Implemented via an R/Shiny Web Application for Parameter Estimation and Sensitivity Analysis in Compartmental Brain Modeling 2025-09-05 math.DS;q-bio.QM q-bio.QM https://arxiv.org/abs/2509.04778 0.7695 0.7709 True 6 6.75 False 2509.04718 When correcting for regression to the mean is worse than no correction at all 2025-09-05 physics.data-an;q-bio.QM;stat.ME q-bio.QM https://arxiv.org/abs/2509.04718 False False 2509.05110 Elasticity and plasticity of epithelial gap closure 2025-09-05 physics.bio-ph;physics.soft;q-bio.TO q-bio.TO https://arxiv.org/abs/2509.05110 0.7604 0.8115 True 8 8.0 True 2509.04995 Revealing the building blocks of tree balance: fundamental units of the Sackin and Colless Indices 2025-09-05 math.CO;q-bio.PE q-bio.PE https://arxiv.org/abs/2509.04995 False False 2509.04995 Revealing the building blocks of tree balance: fundamental units of the Sackin and Colless Indices 2025-09-05 math.CO;q-bio.PE q-bio.PE https://arxiv.org/abs/2509.04995 False False 2509.04995 Revealing the building blocks of tree balance: fundamental units of the Sackin and Colless Indices 2025-09-05 math.CO;q-bio.PE q-bio.PE https://arxiv.org/abs/2509.04995 False False 2509.04718 When correcting for regression to the mean is worse than no correction at all 2025-09-05 physics.data-an;q-bio.QM;stat.ME q-bio.QM https://arxiv.org/abs/2509.04718 False False 2509.04718 When correcting for regression to the mean is worse than no correction at all 2025-09-05 physics.data-an;q-bio.QM;stat.ME q-bio.QM https://arxiv.org/abs/2509.04718 False False 2509.07001 Artificial Intelligence as an Opportunity for the Science of Consciousness: A Dual-Resolution Framework 2025-09-05 q-bio.NC q-bio.NC https://arxiv.org/abs/2509.07001 False False 2509.07001 Artificial Intelligence as an Opportunity for the Science of Consciousness: A Dual-Resolution Framework 2025-09-05 q-bio.NC q-bio.NC https://arxiv.org/abs/2509.07001 False False 2509.04995 Revealing the building blocks of tree balance: fundamental units of the Sackin and Colless Indices 2025-09-05 math.CO;q-bio.PE q-bio.PE https://arxiv.org/abs/2509.04995 False False 2509.04995 Revealing the building blocks of tree balance: fundamental units of the Sackin and Colless Indices 2025-09-05 math.CO;q-bio.PE q-bio.PE https://arxiv.org/abs/2509.04995 False False 2509.04064 An analog-electronic implementation of a harmonic oscillator recurrent neural network 2025-09-04 physics.app-ph;physics.comp-ph;q-bio.NC q-bio.NC https://arxiv.org/abs/2509.04064 False False 2509.04106 Optimal rate-variance coding due to firing threshold adaptation near criticality 2025-09-04 physics.AO;physics.bio-ph;physics.dis-nn;physics.stat-mech;q-bio.NC q-bio.NC https://arxiv.org/abs/2509.04106 False False 2509.04316 Control of lumen morphology by lateral and basal cell surfaces 2025-09-04 physics.bio-ph;physics.soft;q-bio.TO q-bio.TO https://arxiv.org/abs/2509.04316 False False 2509.04586 Thermodynamic analysis of water sorption isotherms on magnetically treated maize (Zea mays L.) seeds 2025-09-04 q-bio.TO q-bio.TO https://arxiv.org/abs/2509.04586 False False 2509.05373 Comparison of the effectiveness and costs of hepatitis A vaccination strategies to mitigate future deaths in the Republic of Korea 2025-09-04 q-bio.PE q-bio.PE https://arxiv.org/abs/2509.05373 False False 2509.04188 Sensitivity analysis of an epidemic model with a mass vaccination program of a homogeneous population 2025-09-04 cs.NA;math.NA;q-bio.PE q-bio.PE https://arxiv.org/abs/2509.04188 False False 2509.04633 The Physical Basis of Prediction: World Model Formation in Neural Organoids via an LLM-Generated Curriculum 2025-09-04 cs.AI;cs.LG;cs.NE;q-bio.NC q-bio.NC https://arxiv.org/abs/2509.04633 False False 2509.04201 Nanometer-precision tracking of adipocyte dynamics via single lipid droplet whispering-gallery optical resonances 2025-09-04 physics.optics;physics.soft;q-bio.CB q-bio.CB https://arxiv.org/abs/2509.04201 False False 2509.04316 Control of lumen morphology by lateral and basal cell surfaces 2025-09-04 physics.bio-ph;physics.soft;q-bio.TO q-bio.TO https://arxiv.org/abs/2509.04316 False False 2509.02940 Remember when? Deciphering Ediacaran-Cambrian Metazoan behaviour and temporal memory using fossil movement paths 2025-09-03 physics.bio-ph;q-bio.PE;q-bio.QM q-bio.PE https://arxiv.org/abs/2509.02940 False False 2509.02982 StableSleep: Source-Free Test-Time Adaptation for Sleep Staging with Lightweight Safety Rails 2025-09-03 cs.AI;cs.LG;cs.NE;q-bio.NC q-bio.NC https://arxiv.org/abs/2509.02982 False False 2509.03330 Network-driven discovery of repurposable drugs targeting hallmarks of aging 2025-09-03 physics.soc-ph;q-bio.MN q-bio.MN https://arxiv.org/abs/2509.03330 False False 2509.03336 AI-Driven Drug Repurposing through miRNA-mRNA Relation 2025-09-03 cs.IR;q-bio.MN;q-bio.QM q-bio.MN https://arxiv.org/abs/2509.03336 False False 2509.03351 epiGPTope: A machine learning-based epitope generator and classifier 2025-09-03 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2509.03351 False False 2509.03374 Dynamics of Infection Spread and Hotspot Growth in Bi-Pathogen Networks 2025-09-03 math.DS;physics.AO;physics.soc-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2509.03374 False False 2509.03425 LINKER: Learning Interactions Between Functional Groups and Residues With Chemical Knowledge-Enhanced Reasoning and Explainability 2025-09-03 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2509.03425 False False 2509.03551 Predicting Antimicrobial Resistance (AMR) in Campylobacter, a Foodborne Pathogen, and Cost Burden Analysis Using Machine Learning 2025-09-03 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2509.03551 False False 2509.03681 ALBATROSS: Cheap Filtration Based Geometry via Stochastic Sub-Sampling 2025-09-03 q-bio.QM q-bio.QM https://arxiv.org/abs/2509.03681 False False 2509.03765 Randomness with constraints: constructing minimal models for high-dimensional biology 2025-09-03 physics.bio-ph;q-bio.QM q-bio.QM https://arxiv.org/abs/2509.03765 False False 2509.03084 SurGBSA: Learning Representations From Molecular Dynamics Simulations 2025-09-03 cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2509.03084 False False 2509.03487 SafeProtein: Red-Teaming Framework and Benchmark for Protein Foundation Models 2025-09-03 cs.AI;cs.CR;cs.LG;q-bio.BM;q-bio.QM q-bio.BM https://arxiv.org/abs/2509.03487 False False 2509.03398 Machine Learning-Enhanced Colorimetric Sensing: Achieving over 5700-fold Accuracy Improvement via Full-Spectrum Modeling 2025-09-03 math.MP;physics.math-ph;physics.med-ph;q-bio.QM q-bio.QM https://arxiv.org/abs/2509.03398 False False 2509.03654 Dominant vertices and attractors' landscape for Boolean networks 2025-09-03 math.DS;physics.CG;q-bio.MN q-bio.MN https://arxiv.org/abs/2509.03654 False False 2509.03398 Multi-Wavelength Machine Learning for High-Precision Colorimetric Sensing 2025-09-03 math.MP;physics.math-ph;physics.med-ph;q-bio.QM q-bio.QM https://arxiv.org/abs/2509.03398 False False 2509.03398 Multi-Wavelength Machine Learning for High-Precision Colorimetric Sensing 2025-09-03 math.MP;physics.math-ph;physics.med-ph;q-bio.QM q-bio.QM https://arxiv.org/abs/2509.03398 False False 2509.03351 epiGPTope: A machine learning-based epitope generator and classifier 2025-09-03 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2509.03351 False False 2509.03351 epiGPTope: A machine learning-based epitope generator and classifier 2025-09-03 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2509.03351 False False 2509.01848 Cultural tightness and social cohesion under evolving norms 2025-09-02 physics.soc-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2509.01848 False False 2509.02069 Data-Dependent Smoothing for Protein Discovery with Walk-Jump Sampling 2025-09-02 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2509.02069 False False 2509.02234 Improving Electroencephalogram-Based Deception Detection in Concealed Information Test under Low Stimulus Heterogeneity 2025-09-02 q-bio.NC q-bio.NC https://arxiv.org/abs/2509.02234 False False 2509.02255 Raman Spectroscopy for the Early Detection of Huanglongbing and Citrus Canker in Plants: A Review 2025-09-02 q-bio.QM q-bio.QM https://arxiv.org/abs/2509.02255 False False 2509.02265 Optical Spectroscopic Imaging for Early Detection of Salinity Stress in Plants: A Review 2025-09-02 q-bio.QM q-bio.QM https://arxiv.org/abs/2509.02265 False False 2509.02282 Exploring accuracy and uncertainty quantification in physics-informed neural networks for inferring microbial community dynamics 2025-09-02 q-bio.QM q-bio.QM https://arxiv.org/abs/2509.02282 False False 2509.02496 BoolForge: Random Generation and Analysis of Boolean Functions and Networks in Python 2025-09-02 math.DS;physics.CG;q-bio.MN q-bio.MN https://arxiv.org/abs/2509.02496 0.8072 0.8196 True 6 5.7 False 2509.02201 Prospects for acoustically monitoring ecosystem tipping points 2025-09-02 cs.SD;eess.AS;math.DS;q-bio.PE q-bio.PE https://arxiv.org/abs/2509.02201 False False 2509.02648 Optimizing Prognostic Biomarker Discovery in Pancreatic Cancer Through Hybrid Ensemble Feature Selection and Multi-Omics Data 2025-09-02 cs.LG;q-bio.GN;q-bio.QM;stat.AP q-bio.GN https://arxiv.org/abs/2509.02648 False False 2509.02650 Can Media Act as a Soft Regulator of Safe AI Development? A Game Theoretical Analysis 2025-09-02 cs.AI;cs.GT;q-bio.PE q-bio.PE https://arxiv.org/abs/2509.02650 False False 2509.02746 Mentality: A Mamba-based Approach towards Foundation Models for EEG 2025-09-02 cs.AI;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2509.02746 False False 2509.02799 Data-driven mean-field within whole-brain models 2025-09-02 q-bio.NC q-bio.NC https://arxiv.org/abs/2509.02799 False False 2509.06991 Towards deep-learning based detection and quantification of intestinal metaplasia on digitized gastric biopsies: a multi-expert comparative study 2025-09-02 cs.CE;q-bio.TO q-bio.TO https://arxiv.org/abs/2509.06991 False False 2509.02139 On sources to variabilities of simple cells in the primary visual cortex: A principled theory for the interaction between geometric image transformations and receptive field responses 2025-09-02 q-bio.NC q-bio.NC https://arxiv.org/abs/2509.02139 False False 2509.02196 Beyond Ensembles: Simulating All-Atom Protein Dynamics in a Learned Latent Space 2025-09-02 cs.AI;q-bio.BM q-bio.BM https://arxiv.org/abs/2509.02196 False False 2509.02060 Morphology-Aware Peptide Discovery via Masked Conditional Generative Modeling 2025-09-02 cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2509.02060 False False 2509.02060 Morphology-Aware Peptide Discovery via Masked Conditional Generative Modeling 2025-09-02 cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2509.02060 False False 2509.02496 BoolForge: Controlled Generation and Analysis of Boolean Functions and Networks 2025-09-02 math.DS;physics.CG;q-bio.MN q-bio.MN https://arxiv.org/abs/2509.02496 0.8072 0.8196 False False 2509.02648 Optimizing Prognostic Biomarker Discovery in Pancreatic Cancer Through Hybrid Ensemble Feature Selection and Multi-Omics Data 2025-09-02 cs.LG;q-bio.GN;q-bio.QM;stat.AP q-bio.GN https://arxiv.org/abs/2509.02648 False False 2509.02648 Optimizing Prognostic Biomarker Discovery in Pancreatic Cancer Through Hybrid Ensemble Feature Selection and Multi-Omics Data 2025-09-02 cs.LG;q-bio.GN;q-bio.QM;stat.AP q-bio.GN https://arxiv.org/abs/2509.02648 False False 2509.02060 Morphology-Aware Peptide Discovery via Masked Conditional Generative Modeling 2025-09-02 cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2509.02060 False False 2509.02060 Morphology-Aware Peptide Discovery via Masked Conditional Generative Modeling 2025-09-02 cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2509.02060 False False 2509.02139 On sources to variabilities of simple cells in the primary visual cortex: A principled theory for the interaction between geometric image transformations and receptive field responses 2025-09-02 q-bio.NC q-bio.NC https://arxiv.org/abs/2509.02139 False False 2509.02139 On sources to variabilities of simple cells in the primary visual cortex: A principled theory for the interaction between geometric image transformations and receptive field responses 2025-09-02 q-bio.NC q-bio.NC https://arxiv.org/abs/2509.02139 False False 2509.01038 Learning residue level protein dynamics with multiscale Gaussians 2025-09-01 cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2509.01038 False False 2509.01073 IMU-Enhanced EEG Motion Artifact Removal with Fine-Tuned Large Brain Models 2025-09-01 cs.LG;eess.SP;q-bio.NC q-bio.NC https://arxiv.org/abs/2509.01073 False False 2509.01102 Quantifying movement: Expanding the Ichnologist toolkit 2025-09-01 physics.bio-ph;q-bio.PE;q-bio.QM q-bio.PE https://arxiv.org/abs/2509.01102 False False 2509.01104 Spatial trends in Ediacaran Bilaterian trails 2025-09-01 physics.bio-ph;q-bio.PE;q-bio.QM q-bio.PE https://arxiv.org/abs/2509.01104 False False 2509.01126 Sensitivity-Driven Migration and the Evolution of Cooperation in Multi-Player Games on Structured Populations 2025-09-01 q-bio.PE q-bio.PE https://arxiv.org/abs/2509.01126 False False 2509.01180 Beyond Exhaustive Sampling: Efficient Rotational Matching via Ball Harmonics 2025-09-01 eess.SP;q-bio.QM q-bio.QM https://arxiv.org/abs/2509.01180 False False 2509.01326 Automatic Screening of Parkinson's Disease from Visual Explorations 2025-09-01 cs.CV;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2509.01326 False False 2509.01407 Estimation of Phylogenetic Tree using Gene Sequencing Data 2025-09-01 q-bio.PE q-bio.PE https://arxiv.org/abs/2509.01407 False False 2509.01408 When Blood Parts Ways: Phase Separation in Microstructured Environments 2025-09-01 physics.soft;q-bio.CB q-bio.CB https://arxiv.org/abs/2509.01408 False False 2509.01550 OTMol: Robust Molecular Structure Comparison via Optimal Transport 2025-09-01 math.OC;q-bio.BM q-bio.BM https://arxiv.org/abs/2509.01550 False False 2509.01565 Enabling Down Syndrome Research through a Knowledge Graph-Driven Analytical Framework 2025-09-01 cs.AI;cs.DB;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2509.01565 False False 2509.01760 Context dependent adaptation in a neural computation 2025-09-01 physics.bio-ph;q-bio.NC q-bio.NC https://arxiv.org/abs/2509.01760 False False 2509.01817 Stochastic Analysis of Taxis and Kinesis Properties of Colonial Protozoa 2025-09-01 physics.bio-ph;q-bio.QM q-bio.QM https://arxiv.org/abs/2509.01817 False False 2509.01695 Heterogeneity drives plasmid maintenance in large microbial communities 2025-09-01 physics.dis-nn;q-bio.PE q-bio.PE https://arxiv.org/abs/2509.01695 False False 2509.02626 A Wrist-Worn Multimodal Reaction Time Monitoring Device for Ecologically-Valid Cognitive Assessment 2025-09-01 q-bio.QM q-bio.QM https://arxiv.org/abs/2509.02626 False False 2509.02639 Enhanced Single-Cell RNA-seq Embedding through Gene Expression and Data-Driven Gene-Gene Interaction Integration 2025-09-01 cs.AI;q-bio.GN q-bio.GN https://arxiv.org/abs/2509.02639 False False 2509.01235 Geometric origin of adversarial vulnerability in deep learning 2025-09-01 cs.LG;physics.stat-mech;q-bio.NC q-bio.NC https://arxiv.org/abs/2509.01235 False False 2509.10502 MIDOG 2025 Track 2: A Deep Learning Model for Classification of Atypical and Normal Mitotic Figures under Class and Hardness Imbalances 2025-09-01 cs.CV;eess.IV;q-bio.QM q-bio.QM https://arxiv.org/abs/2509.10502 False False 2509.01426 DCA: Graph-Guided Deep Embedding Clustering for Brain Atlases 2025-09-01 cs.AI;cs.CV;q-bio.NC q-bio.NC https://arxiv.org/abs/2509.01426 False False 2509.01504 Rule-Based Gillespie Simulation of Chemical Systems 2025-09-01 physics.chem-ph;q-bio.MN q-bio.MN https://arxiv.org/abs/2509.01504 False False 2509.01806 Intermittent localization and fast spatial learning by non-Markov random walks with decaying memory 2025-09-01 physics.stat-mech;q-bio.NC q-bio.NC https://arxiv.org/abs/2509.01806 False False 2509.01192 Personalized Transcranial Electrical Stimulation: A Review of Computational Modeling and Optimization 2025-09-01 cs.CE;cs.NE;q-bio.NC q-bio.NC https://arxiv.org/abs/2509.01192 False False 2509.01365 Structured Interactions Drive Abrupt Transitions in the Spatial Organization of Microbial Communities 2025-09-01 physics.bio-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2509.01365 False False 2509.02626 A Wrist-Worn Multimodal Reaction Time Monitoring Device for Ecologically-Valid Cognitive Assessment 2025-09-01 q-bio.QM q-bio.QM https://arxiv.org/abs/2509.02626 False False 2509.01038 Learning residue level protein dynamics with multiscale Gaussians 2025-09-01 cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2509.01038 False False 2509.01235 Geometric origin of adversarial vulnerability in deep learning 2025-09-01 cs.LG;physics.stat-mech;q-bio.NC q-bio.NC https://arxiv.org/abs/2509.01235 False False 2509.01235 Geometric origin of adversarial vulnerability in deep learning 2025-09-01 cs.LG;physics.stat-mech;q-bio.NC q-bio.NC https://arxiv.org/abs/2509.01235 False False 2509.00704 Why Pool When You Can Flow? Active Learning with GFlowNets 2025-08-31 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2509.00704 False False 2509.00897 Network Community Detection and Novelty Scoring Reveal Underexplored Hub Genes in Rheumatoid Arthritis 2025-08-31 cs.SI;q-bio.GN;q-bio.MN q-bio.GN https://arxiv.org/abs/2509.00897 False False 2509.00939 Retinal processing of natural scenes : challenges ahead 2025-08-31 q-bio.NC q-bio.NC https://arxiv.org/abs/2509.00939 False False 2509.01001 Generalized promotion time cure model: A new modeling framework to identify cell-type-specific genes and improve survival prognosis 2025-08-31 q-bio.GN;stat.CO;stat.ME;stat.ML q-bio.GN https://arxiv.org/abs/2509.01001 False False 2509.00670 PyNoetic: A modular python framework for no-code development of EEG brain-computer interfaces 2025-08-31 cs.AI;cs.HC;cs.LG;eess.SP;q-bio.NC q-bio.NC https://arxiv.org/abs/2509.00670 False False 2509.00730 Response function as a quantitative measure of consciousness in brain dynamics 2025-08-31 physics.CD;physics.stat-mech;q-bio.NC q-bio.NC https://arxiv.org/abs/2509.00730 False False 2509.00704 Why Pool When You Can Flow? Active Learning with GFlowNets 2025-08-31 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2509.00704 False False 2509.00704 Why Pool When You Can Flow? Active Learning with GFlowNets 2025-08-31 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2509.00704 False False 2509.00349 Computational approaches for virus host prediction: A review of methods and applications 2025-08-30 q-bio.GN q-bio.GN https://arxiv.org/abs/2509.00349 False False 2509.00524 Biological Pathway Informed Models with Graph Attention Networks (GATs) 2025-08-30 cs.LG;q-bio.MN q-bio.MN https://arxiv.org/abs/2509.00524 False False 2509.02610 Resilient Biosecurity in the Era of AI-Enabled Bioweapons 2025-08-30 cs.AI;q-bio.QM q-bio.QM https://arxiv.org/abs/2509.02610 False False 2509.00555 Integrated information and predictive processing theories of consciousness: An adversarial collaborative review 2025-08-30 q-bio.NC q-bio.NC https://arxiv.org/abs/2509.00555 False False 2509.00555 Integrated information and predictive processing theories of consciousness: An adversarial collaborative review 2025-08-30 q-bio.NC q-bio.NC https://arxiv.org/abs/2509.00555 False False 2509.00555 Integrated information and predictive processing theories of consciousness: An adversarial collaborative review 2025-08-30 q-bio.NC q-bio.NC https://arxiv.org/abs/2509.00555 False False 2508.21350 The Quantum Compass Mechanism in Cryptochromes 2025-08-29 physics.chem-ph;q-bio.BM q-bio.BM https://arxiv.org/abs/2508.21350 False False 2508.21490 Testing quantum markers of brain processes 2025-08-29 physics.quant-ph;q-bio.NC q-bio.NC https://arxiv.org/abs/2508.21490 False False 2508.21530 A universal animal communication tempo resonates with the receiver's brain 2025-08-29 physics.bio-ph;q-bio.NC;q-bio.PE q-bio.NC https://arxiv.org/abs/2508.21530 False False 2508.21555 Technical Development of Two-Photon Optogenetic Stimulation and Its Potential Application to Brain-Machine Interfaces 2025-08-29 q-bio.NC q-bio.NC https://arxiv.org/abs/2508.21555 False False 2508.21736 MicroLabVR: Interactive 3D Visualization of Simulated Spatiotemporal Microbiome Data in Virtual Reality 2025-08-29 cs.CE;cs.GR;cs.HC;q-bio.CB;q-bio.MN q-bio.CB https://arxiv.org/abs/2508.21736 False False 2509.00123 Friend or Foe 2025-08-29 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2509.00123 False False 2509.00131 Self-supervised large-scale kidney abnormality detection in drug safety assessment studies 2025-08-29 cs.CV;eess.IV;q-bio.QM q-bio.QM https://arxiv.org/abs/2509.00131 False False 2509.00208 Sleep Disorder Diagnosis Using EEG Signals and LSTM Deep Learning Method 2025-08-29 q-bio.NC;q-bio.QM q-bio.NC https://arxiv.org/abs/2509.00208 False False 2509.00219 Perfect adaptation in eukaryotic gradient sensing using cooperative allosteric binding 2025-08-29 physics.bio-ph;q-bio.CB q-bio.CB https://arxiv.org/abs/2509.00219 False False 2508.21484 Data-driven Discovery of Digital Twins in Biomedical Research 2025-08-29 cs.LG;q-bio.QM;stat.ML q-bio.QM https://arxiv.org/abs/2508.21484 False False 2509.02606 Lessons Learned from Deploying Adaptive Machine Learning Agents with Limited Data for Real-time Cell Culture Process Monitoring 2025-08-29 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2509.02606 False False 2509.00134 The effect of predation on the dynamics of Chronic Wasting Disease in deer 2025-08-29 math.DS;q-bio.PE q-bio.PE https://arxiv.org/abs/2509.00134 False False 2508.21806 Suppression of errors in collectively coded information 2025-08-29 physics.bio-ph;physics.stat-mech;q-bio.PE q-bio.PE https://arxiv.org/abs/2508.21806 False False 2509.07751 ExSEnt: Extrema-Segmented Entropy Analysis of Time Series 2025-08-29 cs.IT;math.IT;physics.CD;q-bio.NC q-bio.NC https://arxiv.org/abs/2509.07751 False False 2508.21566 NSPDI-SNN: An efficient lightweight SNN based on nonlinear synaptic pruning and dendritic integration 2025-08-29 cs.AI;cs.NE;q-bio.NC q-bio.NC https://arxiv.org/abs/2508.21566 False False 2509.00200 Simulation-based inference of yeast centromeres 2025-08-29 cs.LG;q-bio.QM;stat.ML q-bio.QM https://arxiv.org/abs/2509.00200 False False 2508.21445 Self-regulated emergence of heavy-tailed weight distributions in evolving complex network architectures 2025-08-29 q-bio.NC q-bio.NC https://arxiv.org/abs/2508.21445 False False 2509.02594 OpenAIs HealthBench in Action: Evaluating an LLM-Based Medical Assistant on Realistic Clinical Queries 2025-08-29 cs.AI;cs.ET;cs.IR;q-bio.QM q-bio.QM https://arxiv.org/abs/2509.02594 False False 2509.00122 Two Issues in Modelling Fish Migration 2025-08-29 q-bio.PE q-bio.PE https://arxiv.org/abs/2509.00122 False False 2508.21749 When Many Trees Go to War: On Sets of Phylogenetic Trees With Almost No Common Structure 2025-08-29 cs.DM;math.CO;q-bio.QM q-bio.QM https://arxiv.org/abs/2508.21749 False False 2508.21749 When Many Trees Go to War: On Sets of Phylogenetic Trees With Almost No Common Structure 2025-08-29 cs.DM;math.CO;q-bio.QM q-bio.QM https://arxiv.org/abs/2508.21749 False False 2509.00219 Perfect adaptation in eukaryotic gradient sensing using cooperative allosteric binding 2025-08-29 physics.bio-ph;q-bio.CB q-bio.CB https://arxiv.org/abs/2509.00219 False False 2509.00219 Perfect adaptation in eukaryotic gradient sensing using cooperative allosteric binding 2025-08-29 physics.bio-ph;q-bio.CB q-bio.CB https://arxiv.org/abs/2509.00219 False False 2508.21490 Testing quantum-like markers in neural dynamics 2025-08-29 physics.quant-ph;q-bio.NC q-bio.NC https://arxiv.org/abs/2508.21490 False False 2509.00134 The effect of predation on the dynamics of Chronic Wasting Disease in deer 2025-08-29 math.DS;q-bio.PE q-bio.PE https://arxiv.org/abs/2509.00134 False False 2509.00134 The effect of predation on the dynamics of Chronic Wasting Disease in deer 2025-08-29 math.DS;q-bio.PE q-bio.PE https://arxiv.org/abs/2509.00134 False False 2509.00134 The effect of predation on the dynamics of Chronic Wasting Disease in deer 2025-08-29 math.DS;q-bio.PE q-bio.PE https://arxiv.org/abs/2509.00134 False False 2508.21490 Testing quantum-like markers in neural dynamics 2025-08-29 physics.quant-ph;q-bio.NC q-bio.NC https://arxiv.org/abs/2508.21490 False False 2508.21490 Testing quantum-like markers in neural dynamics 2025-08-29 physics.quant-ph;q-bio.NC q-bio.NC https://arxiv.org/abs/2508.21490 False False 2509.00123 Friend or Foe 2025-08-29 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2509.00123 False False 2509.00123 Friend or Foe 2025-08-29 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2509.00123 False False 2509.02594 OpenAIs HealthBench in Action: Evaluating an LLM-Based Medical Assistant on Realistic Clinical Queries 2025-08-29 cs.AI;cs.ET;cs.IR;q-bio.QM q-bio.QM https://arxiv.org/abs/2509.02594 False False 2509.02594 OpenAIs HealthBench in Action: Evaluating an LLM-Based Medical Assistant on Realistic Clinical Queries 2025-08-29 cs.AI;cs.ET;cs.IR;q-bio.QM q-bio.QM https://arxiv.org/abs/2509.02594 False False 2508.20336 Adaptive Segmentation of EEG for Machine Learning Applications 2025-08-28 cs.LG;eess.SP;q-bio.NC q-bio.NC https://arxiv.org/abs/2508.20336 False False 2508.20363 Tumorigenesis as a trauma response: the fragmentation of morphogenetic memory drives neoplastic dissociation 2025-08-28 q-bio.CB;q-bio.NC;q-bio.PE;q-bio.TO q-bio.CB https://arxiv.org/abs/2508.20363 False False 2508.20465 On the possibility of deep alignment 2025-08-28 q-bio.NC q-bio.NC https://arxiv.org/abs/2508.20465 False False 2508.20674 Bridging Minds and Machines: Toward an Integration of AI and Cognitive Science 2025-08-28 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2508.20674 False False 2508.20833 Modelling birdsong transmission with methods from molecular sequence analysis 2025-08-28 q-bio.QM;stat.CO q-bio.QM https://arxiv.org/abs/2508.20833 False False 2508.20961 Distinct weak asymmetric interactions shape human brain functions as probability fluxes 2025-08-28 physics.bio-ph;physics.data-an;physics.dis-nn;physics.stat-mech;q-bio.NC q-bio.NC https://arxiv.org/abs/2508.20961 False False 2508.21177 Coherent dynamics in soft-threshold integrate-and-fire networks 2025-08-28 q-bio.NC q-bio.NC https://arxiv.org/abs/2508.21177 False False 2508.21220 Mutual Information Rate -- Linear Noise Approximation and Exact Computation 2025-08-28 cs.IT;math.IT;physics.bio-ph;q-bio.MN q-bio.MN https://arxiv.org/abs/2508.21220 False False 2509.00107 Self-organized learning emerges from coherent coupling of critical neurons 2025-08-28 physics.dis-nn;q-bio.NC q-bio.NC https://arxiv.org/abs/2509.00107 False False 2509.00116 Meta-learning ecological priors from large language models explains human learning and decision making 2025-08-28 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2509.00116 False False 2508.20804 Ising energy model for the stochastic prediction of tumor islets 2025-08-28 physics.comp-ph;physics.med-ph;q-bio.QM q-bio.QM https://arxiv.org/abs/2508.20804 False False 2508.20895 Multicritical Infection Spreading 2025-08-28 physics.bio-ph;physics.dis-nn;physics.stat-mech;q-bio.PE q-bio.PE https://arxiv.org/abs/2508.20895 False False 2508.21053 Activity propagation with Hebbian learning 2025-08-28 physics.bio-ph;physics.dis-nn;physics.stat-mech;q-bio.PE q-bio.PE https://arxiv.org/abs/2508.21053 False False 2508.21006 Practical indistinguishability in a gene regulatory network inference problem, a case study 2025-08-28 q-bio.MN;q-bio.QM q-bio.MN https://arxiv.org/abs/2508.21006 False False 2508.20469 Prediction of Distant Metastasis in Head and Neck Cancer Patients Using Tumor and Peritumoral Multi-Modal Deep Learning 2025-08-28 cs.CV;q-bio.QM q-bio.QM https://arxiv.org/abs/2508.20469 False False 2508.21177 Coherent dynamics in soft-threshold integrate-and-fire networks 2025-08-28 q-bio.NC q-bio.NC https://arxiv.org/abs/2508.21177 False False 2508.21177 Coherent dynamics in soft-threshold integrate-and-fire networks 2025-08-28 q-bio.NC q-bio.NC https://arxiv.org/abs/2508.21177 False False 2509.00116 Meta-learning ecological priors from large language models explains human learning and decision making 2025-08-28 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2509.00116 False False 2509.00116 Meta-learning ecological priors from large language models explains human learning and decision making 2025-08-28 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2509.00116 False False 2508.19632 TopoBind: Multi-Modal Prediction of Antibody-Antigen Binding Free Energy via Sequence Embeddings and Structural Topology 2025-08-27 q-bio.BM q-bio.BM https://arxiv.org/abs/2508.19632 False False 2508.19800 A Multi-Layered Framework for Modeling Human Biology: From Basic AI Agents to a Full-Body AI Agent 2025-08-27 q-bio.BM;q-bio.TO q-bio.BM https://arxiv.org/abs/2508.19800 False False 2508.19829 Single-molecule biophysics 2025-08-27 physics.bio-ph;q-bio.BM q-bio.BM https://arxiv.org/abs/2508.19829 False False 2508.19854 4D-Printing Assisted Scaffolds to Form Cardiac Bricks 2025-08-27 physics.med-ph;physics.mtrl-sci;q-bio.TO q-bio.TO https://arxiv.org/abs/2508.19854 False False 2508.19914 The Next Layer: Augmenting Foundation Models with Structure-Preserving and Attention-Guided Learning for Local Patches to Global Context Awareness in Computational Pathology 2025-08-27 cs.AI;q-bio.QM;stat.ML q-bio.QM https://arxiv.org/abs/2508.19914 False False 2508.19948 Correcting model error bias in estimations of neuronal dynamics from time series observations 2025-08-27 physics.CD;q-bio.NC q-bio.NC https://arxiv.org/abs/2508.19948 False False 2508.20006 Modeling the evolution of collective synchrony 2025-08-27 physics.AO;q-bio.PE q-bio.PE https://arxiv.org/abs/2508.20006 False False 2508.20150 Biomarker Integration and Biosensor Technologies Enabling AI-Driven Insights into Biological Aging 2025-08-27 q-bio.QM q-bio.QM https://arxiv.org/abs/2508.20150 False False 2508.20219 Identifiability, Sensitivity, and Genetic Algorithms in Bacterial Biofilm Selection Models 2025-08-27 q-bio.PE;q-bio.QM q-bio.PE https://arxiv.org/abs/2508.20219 False False 2508.20275 A Systematic Review on the Generative AI Applications in Human Medical Genomics 2025-08-27 cs.CL;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2508.20275 False False 2508.20318 Spatiotemporal Determinants of Vector-Borne Disease Outbreaks 2025-08-27 physics.soc-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2508.20318 False False 2509.03534 Prebiotic Functional Programs: Endogenous Selection in an Artificial Chemistry 2025-08-27 cs.FL;q-bio.PE q-bio.PE https://arxiv.org/abs/2509.03534 False False 2508.20004 Modal Geometry Governs Proteoform Dynamics 2025-08-27 q-bio.BM q-bio.BM https://arxiv.org/abs/2508.20004 False False 2508.20218 Velocity Spectrum Imaging using velocity encoding preparation pulses 2025-08-27 physics.med-ph;q-bio.QM q-bio.QM https://arxiv.org/abs/2508.20218 False False 2509.09696 DCHO: A Decomposition-Composition Framework for Predicting Higher-Order Brain Connectivity to Enhance Diverse Downstream Applications 2025-08-27 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2509.09696 False False 2508.20275 A Systematic Review on the Generative AI Applications in Human Medical Genomics 2025-08-27 cs.CL;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2508.20275 False False 2508.20275 A Systematic Review on the Generative AI Applications in Human Medical Genomics 2025-08-27 cs.CL;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2508.20275 False False 2508.18638 Biologically Disentangled Multi-Omic Modeling Reveals Mechanistic Insights into Pan-Cancer Immunotherapy Resistance 2025-08-26 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2508.18638 False False 2508.18710 Adaptation to extreme stress under the growth-survival fitness trade-off 2025-08-26 q-bio.PE q-bio.PE https://arxiv.org/abs/2508.18710 False False 2508.18828 Dynamics of fixation probability in a population with fluctuating size 2025-08-26 physics.stat-mech;q-bio.PE q-bio.PE https://arxiv.org/abs/2508.18828 False False 2508.18853 Think before you fit: parameter identifiability, sensitivity and uncertainty in systems biology models 2025-08-26 math.ST;q-bio.QM;stat.AP;stat.ME;stat.TH q-bio.QM https://arxiv.org/abs/2508.18853 False False 2508.19025 In-vitro Anti-bacterial Activity of Methanol and Aqueous Crude Extracts of Horsfieldia iryaghedhi 2025-08-26 q-bio.BM q-bio.BM https://arxiv.org/abs/2508.19025 False False 2508.19048 Time Series Analysis of Spiking Neural Systems via Transfer Entropy and Directed Persistent Homology 2025-08-26 cs.CV;q-bio.NC q-bio.NC https://arxiv.org/abs/2508.19048 False False 2508.19049 Evaluation of in vitro antibacterial activity and phytochemical profile of aqueous leaf extract of Asystasia variabilis 2025-08-26 q-bio.BM q-bio.BM https://arxiv.org/abs/2508.19049 False False 2508.19197 Unraveling the temporal dependence of ecological interaction measures 2025-08-26 physics.bio-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2508.19197 False False 2508.19420 Using PyBioNetFit to Leverage Qualitative and Quantitative Data in Biological Model Parameterization and Uncertainty Quantification 2025-08-26 q-bio.QM q-bio.QM https://arxiv.org/abs/2508.19420 False False 2508.18571 Alljoined-1.6M: A Million-Trial EEG-Image Dataset for Evaluating Affordable Brain-Computer Interfaces 2025-08-26 q-bio.NC q-bio.NC https://arxiv.org/abs/2508.18571 False False 2508.19479 DeepAtlas: a tool for effective manifold learning 2025-08-26 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2508.19479 False False 2508.20130 Artificial Intelligence for CRISPR Guide RNA Design: Explainable Models and Off-Target Safety 2025-08-26 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2508.20130 False False 2508.19424 MS-ConTab: Multi-Scale Contrastive Learning of Mutation Signatures for Pan Cancer Representation and Stratification 2025-08-26 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2508.19424 False False 2509.08831 Path to Intelligence: Measuring Similarity between Human Brain and Large Language Model Beyond Language Task 2025-08-26 q-bio.NC q-bio.NC https://arxiv.org/abs/2509.08831 False False 2509.09693 Glorbit: A Modular, Web-Based Platform for AI Based Periorbital Measurement in Low-Resource Settings 2025-08-26 eess.IV;q-bio.TO q-bio.TO https://arxiv.org/abs/2509.09693 False False 2509.05309 ProtSAE: Disentangling and Interpreting Protein Language Models via Semantically-Guided Sparse Autoencoders 2025-08-26 cs.AI;cs.CL;q-bio.QM q-bio.QM https://arxiv.org/abs/2509.05309 False False 2508.18579 DrugReasoner: Interpretable Drug Approval Prediction with a Reasoning-augmented Language Model 2025-08-26 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2508.18579 False False 2508.18710 Adaptation to extreme stress under the growth-survival fitness trade-off 2025-08-26 q-bio.PE q-bio.PE https://arxiv.org/abs/2508.18710 False False 2508.18710 Adaptation to extreme stress under the growth-survival fitness trade-off 2025-08-26 q-bio.PE q-bio.PE https://arxiv.org/abs/2508.18710 False False 2508.19420 Using PyBioNetFit to Leverage Qualitative and Quantitative Data in Biological Model Parameterization and Uncertainty Quantification 2025-08-26 q-bio.QM q-bio.QM https://arxiv.org/abs/2508.19420 False False 2508.19420 Using PyBioNetFit to Leverage Qualitative and Quantitative Data in Biological Model Parameterization and Uncertainty Quantification 2025-08-26 q-bio.QM q-bio.QM https://arxiv.org/abs/2508.19420 False False 2509.09693 Glorbit: A Modular, Web-Based Platform for AI Based Periorbital Measurement in Low-Resource Settings 2025-08-26 eess.IV;q-bio.TO q-bio.TO https://arxiv.org/abs/2509.09693 False False 2508.18710 Adaptation to extreme stress under the growth-survival fitness trade-off 2025-08-26 physics.bio-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2508.18710 False False 2508.18710 Adaptation to extreme stress under the growth-survival fitness trade-off 2025-08-26 physics.bio-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2508.18710 False False 2508.19197 Unraveling the temporal dependence of ecological interaction measures 2025-08-26 physics.bio-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2508.19197 False False 2508.19197 Unraveling the temporal dependence of ecological interaction measures 2025-08-26 physics.bio-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2508.19197 False False 2508.17599 Species coexistence in the reinforcement learning paradigm 2025-08-25 physics.AO;physics.dis-nn;q-bio.PE q-bio.PE https://arxiv.org/abs/2508.17599 False False 2508.17815 Multi-domain Distribution Learning for De Novo Drug Design 2025-08-25 cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2508.17815 False False 2508.17891 One pocket to activate them all: Efforts on understanding the modulator pocket in K2P channels 2025-08-25 physics.bio-ph;physics.comp-ph;q-bio.BM q-bio.BM https://arxiv.org/abs/2508.17891 False False 2508.18058 Comprehensively stratifying MCIs into distinct risk subtypes based on brain imaging genetics fusion learning 2025-08-25 q-bio.QM q-bio.QM https://arxiv.org/abs/2508.18058 False False 2508.18066 Arnold: a generalist muscle transformer policy 2025-08-25 cs.AI;cs.LG;cs.RO;q-bio.QM q-bio.QM https://arxiv.org/abs/2508.18066 False False 2508.18084 An integrated vertex model of the mesoderm invagination during the embryonic development of Drosophila 2025-08-25 physics.AO;q-bio.TO q-bio.TO https://arxiv.org/abs/2508.18084 False False 2508.18226 Disentangling the Factors of Convergence between Brains and Computer Vision Models 2025-08-25 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2508.18226 False False 2508.18096 Realizing Reduced and Sparse Biochemical Reaction Networks from Dynamics 2025-08-25 cs.SY;eess.SY;math.OC;q-bio.MN q-bio.MN https://arxiv.org/abs/2508.18096 False False 2508.18446 From Prediction to Simulation: AlphaFold 3 as a Differentiable Framework for Structural Biology 2025-08-25 cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2508.18446 False False 2508.18484 One-dimensional modeling of blood flow: A comprehensive yet concise review 2025-08-25 q-bio.QM q-bio.QM https://arxiv.org/abs/2508.18484 False False 2508.18493 Disordered But Rhythmic: the role of intrinsic protein disorder in eukaryotic circadian timing 2025-08-25 q-bio.BM q-bio.BM https://arxiv.org/abs/2508.18493 False False 2508.18567 Sparse Autoencoders for Low-$N$ Protein Function Prediction and Design 2025-08-25 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2508.18567 False False 2508.18327 Adding a Storage Pool improves 3-PG Tree-ring Simulations 2025-08-25 q-bio.QM q-bio.QM https://arxiv.org/abs/2508.18327 False False 2508.21082 ImmunoAI: Accelerated Antibody Discovery Using Gradient-Boosted Machine Learning with Thermodynamic-Hydrodynamic Descriptors and 3D Geometric Interface Topology 2025-08-25 cs.LG;q-bio.BM;q-bio.QM q-bio.BM https://arxiv.org/abs/2508.21082 False False 2509.07991 DLGE: Dual Local-Global Encoding for Generalizable Cross-BCI-Paradigm 2025-08-25 cs.AI;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2509.07991 False False 2509.06972 Quantifying the Impact of Epigallocatechin Gallate and Piperine on D. tigrina Regeneration 2025-08-25 q-bio.TO q-bio.TO https://arxiv.org/abs/2509.06972 False False 2508.18404 Saccade crossing avoidance as a visual search strategy 2025-08-25 cs.CV;q-bio.NC;q-bio.QM q-bio.NC https://arxiv.org/abs/2508.18404 False False 2508.18038 A homoclinic route to chaos in omnivore communities 2025-08-25 physics.CD;q-bio.PE q-bio.PE https://arxiv.org/abs/2508.18038 False False 2508.17699 Benchmarking Class Activation Map Methods for Explainable Brain Hemorrhage Classification on Hemorica Dataset 2025-08-25 cs.CV;q-bio.QM q-bio.QM https://arxiv.org/abs/2508.17699 False False 2508.17599 Decoding species coexistence: A reinforcement learning perspective 2025-08-25 physics.AO;physics.dis-nn;q-bio.PE q-bio.PE https://arxiv.org/abs/2508.17599 False False 2508.17599 Decoding species coexistence: A reinforcement learning perspective 2025-08-25 physics.AO;physics.dis-nn;q-bio.PE q-bio.PE https://arxiv.org/abs/2508.17599 False False 2508.18066 Arnold: A multi-task, multi-embodiment muscle transformer policy 2025-08-25 cs.AI;cs.LG;cs.RO;q-bio.QM q-bio.QM https://arxiv.org/abs/2508.18066 False False 2508.18066 Arnold: A multi-task, multi-embodiment muscle transformer policy 2025-08-25 cs.AI;cs.LG;cs.RO;q-bio.QM q-bio.QM https://arxiv.org/abs/2508.18066 False False 2508.17345 ShortListing Model: A Streamlined SimplexDiffusion for Discrete Variable Generation 2025-08-24 cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2508.17345 False False 2508.17389 Neural Proteomics Fields for Super-resolved Spatial Proteomics Prediction 2025-08-24 cs.AI;cs.CV;q-bio.QM q-bio.QM https://arxiv.org/abs/2508.17389 False False 2508.17555 Boltzina: Efficient and Accurate Virtual Screening via Docking-Guided Binding Prediction with Boltz-2 2025-08-24 cs.CE;cs.LG;q-bio.BM;q-bio.QM q-bio.BM https://arxiv.org/abs/2508.17555 False False 2508.20125 Improving Liver Disease Diagnosis with SNNDeep: A Custom Spiking Neural Network Using Diverse Learning Algorithms 2025-08-24 cs.AI;cs.CV;cs.NE;q-bio.NC q-bio.NC https://arxiv.org/abs/2508.20125 False False 2509.06969 Association of Timing and Duration of Moderate-to-Vigorous Physical Activity with Cognitive Function and Brain Aging: A Population-Based Study Using the UK Biobank 2025-08-24 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2509.06969 False False 2509.06970 Impact of Neuron Models on Spiking Neural Networks performance. A Complexity Based Classification Approach 2025-08-24 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2509.06970 0.763 0.7116 True 6 6.15 False 2508.20125 Improving Liver Disease Diagnosis with SNNDeep: A Custom Spiking Neural Network Using Diverse Learning Algorithms 2025-08-24 cs.AI;cs.CV;cs.NE;q-bio.NC q-bio.NC https://arxiv.org/abs/2508.20125 False False 2508.16877 A coalgebraic perspective on predictive processing 2025-08-23 q-bio.NC q-bio.NC https://arxiv.org/abs/2508.16877 False False 2508.16934 Addressing Annotation Scarcity in Hyperspectral Brain Image Segmentation with Unsupervised Domain Adaptation 2025-08-23 cs.CV;q-bio.QM q-bio.QM https://arxiv.org/abs/2508.16934 False False 2508.17010 Lie-RMSD: A Gradient-Based Framework for Protein Structural Alignment using Lie Algebra 2025-08-23 q-bio.QM q-bio.QM https://arxiv.org/abs/2508.17010 False False 2508.18304 scI2CL: Effectively Integrating Single-cell Multi-omics by Intra- and Inter-omics Contrastive Learning 2025-08-23 cs.AI;cs.LG;q-bio.CB;q-bio.GN q-bio.CB https://arxiv.org/abs/2508.18304 False False 2508.16895 Quantum State Fidelity for Functional Neural Network Construction 2025-08-23 cs.ET;cs.NE;math.MG;physics.quant-ph;q-bio.NC q-bio.NC https://arxiv.org/abs/2508.16895 False False 2508.16128 From Cancer Drivers to Cancer Keepers: Paradigm Shift and Clinical Implications 2025-08-22 q-bio.MN q-bio.MN https://arxiv.org/abs/2508.16128 False False 2508.16274 EEG Study of the Influence of Imagined Temperature Sensations on Neuronal Activity in the Sensorimotor Cortex 2025-08-22 cs.HC;q-bio.NC q-bio.NC https://arxiv.org/abs/2508.16274 False False 2508.16548 Stochastic modelling reveals that chromatin folding buffers epigenetic landscapes against sirtuin depletion during DNA damage 2025-08-22 q-bio.QM q-bio.QM https://arxiv.org/abs/2508.16548 False False 2508.16740 Integrative Prognostic Modeling of Breast Cancer Survival with Gene Expression and Clinical Data 2025-08-22 q-bio.QM q-bio.QM https://arxiv.org/abs/2508.16740 False False 2508.16760 Rethinking scale in network neuroscience: Contributions and opportunities at the nanoscale 2025-08-22 q-bio.NC q-bio.NC https://arxiv.org/abs/2508.16760 False False 2508.16810 Ignition criteria for trigger waves in cell signaling 2025-08-22 q-bio.CB q-bio.CB https://arxiv.org/abs/2508.16810 False False 2508.18303 Learning Explainable Imaging-Genetics Associations Related to a Neurological Disorder 2025-08-22 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2508.18303 False False 2509.05305 Predicting Brain Morphogenesis via Physics-Transfer Learning 2025-08-22 cs.LG;physics.PS;q-bio.NC q-bio.NC https://arxiv.org/abs/2509.05305 0.7718 0.7883 True 8 8.0 True 2508.16509 ML-PWS: Estimating the Mutual Information Between Experimental Time Series Using Neural Networks 2025-08-22 cs.IT;cs.LG;math.IT;physics.bio-ph;physics.stat-mech;q-bio.NC q-bio.NC https://arxiv.org/abs/2508.16509 False False 2508.16398 Multiscale Growth Kinetics of Model Biomolecular Condensates Under Passive and Active Conditions 2025-08-22 physics.bio-ph;physics.soft;q-bio.BM;q-bio.SC q-bio.BM https://arxiv.org/abs/2508.16398 False False 2508.16803 A predictive modular approach to constraint satisfaction under uncertainty -- with application to glycosylation in continuous monoclonal antibody biosimilar production 2025-08-22 cs.SY;eess.SY;math.OC;q-bio.QM q-bio.QM https://arxiv.org/abs/2508.16803 False False 2508.16414 NeuroKoop: Neural Koopman Fusion of Structural-Functional Connectomes for Identifying Prenatal Drug Exposure in Adolescents 2025-08-22 cs.CV;eess.IV;q-bio.NC q-bio.NC https://arxiv.org/abs/2508.16414 False False 2508.16509 ML-PWS: Estimating the Mutual Information Between Experimental Time Series Using Neural Networks 2025-08-22 cs.IT;cs.LG;math.IT;physics.bio-ph;physics.stat-mech;q-bio.NC q-bio.NC https://arxiv.org/abs/2508.16509 False False 2508.15438 Limitations to Chemotactic Concentration Sensing during $Ca^{2+}$ Signaling 2025-08-21 q-bio.SC q-bio.SC https://arxiv.org/abs/2508.15438 False False 2508.15533 Defining a phylogenetic tree with the minimum number of small-state characters 2025-08-21 math.CO;q-bio.PE q-bio.PE https://arxiv.org/abs/2508.15533 False False 2508.15603 Nonequilibrium protein complexes as molecular automata 2025-08-21 physics.bio-ph;physics.stat-mech;q-bio.BM q-bio.BM https://arxiv.org/abs/2508.15603 False False 2508.15623 Beyond Traditional Surveillance: Harnessing Expert Knowledge for Public Health Forecasting 2025-08-21 cs.CY;q-bio.PE;stat.AP q-bio.PE https://arxiv.org/abs/2508.15623 False False 2508.15740 Spatial Super-Infection and Co-Infection Dynamics in Networks 2025-08-21 physics.AO;physics.PS;physics.soc-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2508.15740 False False 2508.15883 Beyond Imaging: Vision Transformer Digital Twin Surrogates for 3D+T Biological Tissue Dynamics 2025-08-21 cs.AI;cs.LG;eess.IV;q-bio.TO q-bio.TO https://arxiv.org/abs/2508.15883 False False 2509.05302 Sesame: Opening the door to protein pockets 2025-08-21 cs.AI;q-bio.BM q-bio.BM https://arxiv.org/abs/2509.05302 False False 2508.15273 Stoichiometric recipes for periodic oscillations in reaction networks 2025-08-21 math.DS;q-bio.MN q-bio.MN https://arxiv.org/abs/2508.15273 False False 2508.16667 BrainPath: A Biologically-Informed AI Framework for Individualized Aging Brain Generation 2025-08-21 cs.CV;eess.IV;q-bio.NC q-bio.NC https://arxiv.org/abs/2508.16667 False False 2509.04454 Mechanisms for anesthesia, unawareness, respiratory depression, memory replay and sleep: MHb > IPN > PAG + DRN + MRN > claustrum > cortical slow waves 2025-08-21 q-bio.NC q-bio.NC https://arxiv.org/abs/2509.04454 False False 2508.15603 Nonequilibrium protein complexes as molecular automata 2025-08-21 physics.bio-ph;physics.stat-mech;q-bio.BM q-bio.BM https://arxiv.org/abs/2508.15603 False False 2508.14680 Size-structured populations with growth fluctuations: Feynman--Kac formula and decoupling 2025-08-20 physics.data-an;physics.stat-mech;q-bio.PE q-bio.PE https://arxiv.org/abs/2508.14680 False False 2508.14869 The Prompting Brain: Neurocognitive Markers of Expertise in Guiding Large Language Models 2025-08-20 cs.CL;q-bio.NC q-bio.NC https://arxiv.org/abs/2508.14869 False False 2508.14997 Yeast growth is controlled by the proportional scaling of mRNA and ribosome concentrations 2025-08-20 q-bio.BM;q-bio.PE q-bio.BM https://arxiv.org/abs/2508.14997 False False 2508.15013 Goals and the Structure of Experience 2025-08-20 cs.AI;q-bio.NC q-bio.NC https://arxiv.org/abs/2508.15013 False False 2508.15082 From Basic Affordances to Symbolic Thought: A Computational Phylogenesis of Biological Intelligence 2025-08-20 cs.AI;cs.LG;cs.NE;q-bio.NC q-bio.NC https://arxiv.org/abs/2508.15082 False False 2508.15091 Visualizing Poloidal Orientation in DNA Minicircles 2025-08-20 physics.bio-ph;q-bio.BM q-bio.BM https://arxiv.org/abs/2508.15091 False False 2508.15103 Equi-mRNA: Protein Translation Equivariant Encoding for mRNA Language Models 2025-08-20 cs.AI;q-bio.QM q-bio.QM https://arxiv.org/abs/2508.15103 False False 2508.15859 Beyond Individuals: Collective Predictive Coding for Memory, Attention, and the Emergence of Language 2025-08-20 cs.AI;cs.CL;q-bio.NC q-bio.NC https://arxiv.org/abs/2508.15859 False False 2508.15034 An MRI Atlas of the Human Fetal Brain: Reference and Segmentation Tools for Fetal Brain MRI Analysis 2025-08-20 q-bio.QM q-bio.QM https://arxiv.org/abs/2508.15034 False False 2509.03524 Evolutionary dynamics under coordinated reciprocity 2025-08-20 cs.GT;q-bio.PE q-bio.PE https://arxiv.org/abs/2509.03524 False False 2508.14321 piCurve: an R package for modeling photosynthesis-irradiance curves 2025-08-20 q-bio.QM;stat.AP;stat.CO q-bio.QM https://arxiv.org/abs/2508.14321 False False 2508.14740 Modeling the impact of temperature and bird migration on the spread of West Nile virus 2025-08-20 q-bio.PE q-bio.PE https://arxiv.org/abs/2508.14740 False False 2508.15046 A cell-level model to predict the spatiotemporal dynamics of neurodegenerative disease 2025-08-20 physics.soft;q-bio.QM q-bio.QM https://arxiv.org/abs/2508.15046 False False 2508.15077 Modelling the transmission and impact of Omicron variants of Covid-19 in different ethnicity groups in Aotearoa New Zealand 2025-08-20 q-bio.PE q-bio.PE https://arxiv.org/abs/2508.15077 False False 2508.14492 Synaptic bundle theory for spike-driven sensor-motor system: More than eight independent synaptic bundles collapse reward-STDP learning 2025-08-20 cs.AI;physics.AO;q-bio.NC q-bio.NC https://arxiv.org/abs/2508.14492 False False 2508.14740 Modeling the impact of temperature and bird migration on the spread of West Nile virus 2025-08-20 q-bio.PE q-bio.PE https://arxiv.org/abs/2508.14740 False False 2508.15034 An MRI Atlas of the Human Fetal Brain: Reference and Segmentation Tools for Fetal Brain MRI Analysis 2025-08-20 q-bio.QM q-bio.QM https://arxiv.org/abs/2508.15034 False False 2508.15077 Modelling the transmission and impact of Omicron variants of Covid-19 in different ethnicity groups in Aotearoa New Zealand 2025-08-20 q-bio.PE q-bio.PE https://arxiv.org/abs/2508.15077 False False 2508.14680 Size-structured populations with growth fluctuations: Feynman--Kac formula and decoupling 2025-08-20 physics.data-an;physics.stat-mech;q-bio.PE q-bio.PE https://arxiv.org/abs/2508.14680 False False 2508.15034 An MRI Atlas of the Human Fetal Brain: Reference and Segmentation Tools for Fetal Brain MRI Analysis 2025-08-20 q-bio.QM q-bio.QM https://arxiv.org/abs/2508.15034 False False 2508.15034 An MRI Atlas of the Human Fetal Brain: Reference and Segmentation Tools for Fetal Brain MRI Analysis 2025-08-20 q-bio.QM q-bio.QM https://arxiv.org/abs/2508.15034 False False 2508.14997 The proportional scaling of mRNA and ribosome concentrations controls eukaryotic cell growth 2025-08-20 q-bio.BM;q-bio.PE q-bio.BM https://arxiv.org/abs/2508.14997 False False 2508.14997 The proportional scaling of mRNA and ribosome concentrations controls eukaryotic cell growth 2025-08-20 q-bio.BM;q-bio.PE q-bio.BM https://arxiv.org/abs/2508.14997 False False 2508.13414 A sharp lower bound for the number of phylogenetic trees displayed by a tree-child network 2025-08-19 math.CO;q-bio.PE q-bio.PE https://arxiv.org/abs/2508.13414 False False 2508.13451 Benchmarking spike source localization algorithms in high density probes 2025-08-19 q-bio.NC q-bio.NC https://arxiv.org/abs/2508.13451 False False 2508.13498 Improving the FAIRness and Sustainability of the NHGRI Resources Ecosystem 2025-08-19 q-bio.GN q-bio.GN https://arxiv.org/abs/2508.13498 False False 2508.13807 EEG Blink Artifacts Can Identify Read Music in Listening and Imagery 2025-08-19 q-bio.NC q-bio.NC https://arxiv.org/abs/2508.13807 False False 2508.14001 Electrochemical response of biological membranes to localized currents and external electric fields 2025-08-19 physics.bio-ph;physics.soft;q-bio.SC q-bio.SC https://arxiv.org/abs/2508.14001 False False 2508.14143 Beyond Turing: Memory-Amortized Inference as a Foundation for Cognitive Computation 2025-08-19 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2508.14143 False False 2508.14922 Fusing Structural Phenotypes with Functional Data for Early Prediction of Primary Angle Closure Glaucoma Progression 2025-08-19 cs.AI;cs.CV;eess.IV;q-bio.QM q-bio.QM https://arxiv.org/abs/2508.14922 False False 2508.14924 A U-Statistic-based random forest approach for genetic interaction study 2025-08-19 cs.AI;cs.LG;q-bio.GN;stat.ME q-bio.GN https://arxiv.org/abs/2508.14924 False False 2508.14932 TOM: An Open-Source Tongue Segmentation Method with Multi-Teacher Distillation and Task-Specific Data Augmentation 2025-08-19 cs.AI;eess.IV;q-bio.QM q-bio.QM https://arxiv.org/abs/2508.14932 False False 2508.14934 AGP: A Novel Arabidopsis thaliana Genomics-Phenomics Dataset and its HyperGraph Baseline Benchmarking 2025-08-19 cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2508.14934 False False 2508.14936 Can synthetic data reproduce real-world findings in epidemiology? A replication study using tree-based generative AI 2025-08-19 cs.AI;cs.LG;q-bio.QM;stat.AP;stat.ML q-bio.QM https://arxiv.org/abs/2508.14936 False False 2509.03521 BiND: A Neural Discriminator-Decoder for Accurate Bimanual Trajectory Prediction in Brain-Computer Interfaces 2025-08-19 cs.AI;eess.SP;q-bio.NC q-bio.NC https://arxiv.org/abs/2509.03521 False False 2508.14259 Finding Inter-species Associations on Large Citizen Science Datasets 2025-08-19 q-bio.PE q-bio.PE https://arxiv.org/abs/2508.14259 False False 2508.14233 Excitonic Coupling and Photon Antibunching in Venus Yellow Fluorescent Protein Dimers: A Lindblad Master Equation Approach 2025-08-19 physics.bio-ph;physics.mes-hall;physics.optics;physics.quant-ph;q-bio.BM q-bio.BM https://arxiv.org/abs/2508.14233 False False 2508.14232 Extending a Phylogeny-based Method for Detecting Signatures of Multi-level Selection for Applications in Artificial Life 2025-08-19 cs.NE;q-bio.PE q-bio.PE https://arxiv.org/abs/2508.14232 False False 2508.13846 Stochastic synaptic dynamics under learning 2025-08-19 physics.bio-ph;physics.dis-nn;q-bio.NC q-bio.NC https://arxiv.org/abs/2508.13846 0.791 0.7626 True 8 8.0 True 2508.16650 Predicting brain tumour enhancement from non-contrast MR imaging with artificial intelligence 2025-08-19 cs.CV;eess.IV;q-bio.QM q-bio.QM https://arxiv.org/abs/2508.16650 False False 2508.14936 Can synthetic data reproduce real-world findings in epidemiology? A replication study using adversarial random forests 2025-08-19 cs.AI;cs.LG;q-bio.QM;stat.AP;stat.ML q-bio.QM https://arxiv.org/abs/2508.14936 False False 2508.14936 Can synthetic data reproduce real-world findings in epidemiology? A replication study using adversarial random forests 2025-08-19 cs.AI;cs.LG;q-bio.QM;stat.AP;stat.ML q-bio.QM https://arxiv.org/abs/2508.14936 False False 2508.14936 Can synthetic data reproduce real-world findings in epidemiology? A replication study using adversarial random forests 2025-08-19 cs.AI;cs.LG;q-bio.QM;stat.AP;stat.ML q-bio.QM https://arxiv.org/abs/2508.14936 False False 2508.14143 The Urysohn Machine: A Metric-Topological Model of Computation 2025-08-19 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2508.14143 False False 2508.14143 The Urysohn Machine: A Metric-Topological Model of Computation 2025-08-19 cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2508.14143 False False 2508.16650 Predicting brain tumour enhancement from non-contrast MR imaging with artificial intelligence: a multi-cohort retrospective diagnostic accuracy study 2025-08-19 cs.CV;eess.IV;q-bio.QM q-bio.QM https://arxiv.org/abs/2508.16650 False False 2508.16650 Predicting brain tumour enhancement from non-contrast MR imaging with artificial intelligence: a multi-cohort retrospective diagnostic accuracy study 2025-08-19 cs.CV;eess.IV;q-bio.QM q-bio.QM https://arxiv.org/abs/2508.16650 False False 2508.14932 TOM: An Open-Source Tongue Segmentation Method with Multi-Teacher Distillation and Task-Specific Data Augmentation 2025-08-19 cs.AI;eess.IV;q-bio.QM q-bio.QM https://arxiv.org/abs/2508.14932 False False 2508.14932 TOM: An Open-Source Tongue Segmentation Method with Multi-Teacher Distillation and Task-Specific Data Augmentation 2025-08-19 cs.AI;eess.IV;q-bio.QM q-bio.QM https://arxiv.org/abs/2508.14932 False False 2508.12541 Excitation-inhibition balance in cortical networks with heterogeneous cluster sizes and its applications 2025-08-18 physics.bio-ph;q-bio.NC q-bio.NC https://arxiv.org/abs/2508.12541 False False 2508.12575 Deep Learning Model for Amyloidogenicity Prediction using a Pre-trained Protein LLM 2025-08-18 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2508.12575 False False 2508.12629 FlowMol3: Flow Matching for 3D De Novo Small-Molecule Generation 2025-08-18 cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2508.12629 False False 2508.12653 Deep Learning-based QSAR Model for Therapeutic Strategies Targeting SmTGR Protein's Immune Modulating Role in Host-Parasite Interaction 2025-08-18 q-bio.BM q-bio.BM https://arxiv.org/abs/2508.12653 False False 2508.12693 A Novel Nonlinear IP$_3$R State Transition Model and Calcium Oscillation 2025-08-18 physics.bio-ph;q-bio.SC q-bio.SC https://arxiv.org/abs/2508.12693 False False 2508.12702 A Unified Cortical Circuit Model with Divisive Normalization and Self-Excitation for Robust Representation and Memory Maintenance 2025-08-18 cs.AI;cs.NE;q-bio.NC q-bio.NC https://arxiv.org/abs/2508.12702 False False 2508.12742 On the Importance of Behavioral Nuances: Amplifying Non-Obvious Motor Noise Under True Empirical Considerations May Lead to Briefer Assays and Faster Classification Processes 2025-08-18 cs.CV;cs.LG;eess.SP;physics.CD;q-bio.QM q-bio.QM https://arxiv.org/abs/2508.12742 False False 2508.12780 Revisiting the systematics of Brevipalpus flat mites (Tenuipalpidae): phylogeny, species groups and cryptic diversity 2025-08-18 q-bio.PE q-bio.PE https://arxiv.org/abs/2508.12780 False False 2508.12871 Stochastic Multistability of Clonallike States in the Eigen Model: a Fidelity Catastrophe 2025-08-18 q-bio.PE q-bio.PE https://arxiv.org/abs/2508.12871 False False 2508.12975 Synchronization and semantization in deep spiking networks 2025-08-18 cs.NE;q-bio.NC;stat.CO q-bio.NC https://arxiv.org/abs/2508.12975 0.7693 0.708 True 6 6.6 False 2508.13014 QUBODock: A Pip-Installable QUBO Tool for Ligand Pose Generation 2025-08-18 q-bio.BM q-bio.BM https://arxiv.org/abs/2508.13014 False False 2508.13354 VIBES: A Multi-Scale Modeling Approach Integrating Within-Host and Between-Hosts Dynamics in Epidemics 2025-08-18 q-bio.PE q-bio.PE https://arxiv.org/abs/2508.13354 False False 2508.13373 How can we measure the information created by natural selection? 2025-08-18 q-bio.PE q-bio.PE https://arxiv.org/abs/2508.13373 False False 2508.14122 3D Cardiac Anatomy Generation Using Mesh Latent Diffusion Models 2025-08-18 cs.CV;cs.LG;eess.IV;q-bio.TO q-bio.TO https://arxiv.org/abs/2508.14122 False False 2508.12731 Mechanism of Quercetin in Inhibiting Triple-Negative Breast Cancer by Regulating T Cell-Related Targets: An Analysis Based on Single-Cell Sequencing and Network Pharmacology 2025-08-18 q-bio.GN;q-bio.MN q-bio.GN https://arxiv.org/abs/2508.12731 False False 2509.00023 Towards a compleat theory of ecosystem size spectra 2025-08-18 q-bio.PE q-bio.PE https://arxiv.org/abs/2509.00023 False False 2509.00023 Towards a compleat theory of ecosystem size spectra 2025-08-18 q-bio.PE q-bio.PE https://arxiv.org/abs/2509.00023 False False 2509.00023 Towards a compleat theory of ecosystem size spectra 2025-08-18 q-bio.PE q-bio.PE https://arxiv.org/abs/2509.00023 False False 2508.12201 A mathematical model of HPAI transmission between dairy cattle and wild birds with environmental effects 2025-08-17 q-bio.PE q-bio.PE https://arxiv.org/abs/2508.12201 False False 2508.12212 ProtTeX-CC: Activating In-Context Learning in Protein LLM via Two-Stage Instruction Compression 2025-08-17 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2508.12212 False False 2508.12297 A stochastic agent-based model for simulating tumor-immune dynamics and evaluating therapeutic strategies 2025-08-17 q-bio.QM;q-bio.TO q-bio.QM https://arxiv.org/abs/2508.12297 False False 2508.12500 Root Cause Analysis of Hydrogen Bond Separation in Spatio-Temporal Molecular Dynamics using Causal Models 2025-08-17 cs.AI;cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2508.12500 False False 2508.12508 Segmenting Thalamic Nuclei: T1 Maps Provide a Reliable and Efficient Solution 2025-08-17 cs.CV;eess.IV;q-bio.QM q-bio.QM https://arxiv.org/abs/2508.12508 False False 2508.12533 Defining and Benchmarking a Data-Centric Design Space for Brain Graph Construction 2025-08-17 cs.AI;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2508.12533 False False 2508.14106 High-Throughput Low-Cost Segmentation of Brightfield Microscopy Live Cell Images 2025-08-17 cs.AI;cs.CV;eess.IV;q-bio.QM q-bio.QM https://arxiv.org/abs/2508.14106 False False 2508.12260 Mantis: A Foundation Model for Mechanistic Disease Forecasting 2025-08-17 cs.AI;q-bio.QM q-bio.QM https://arxiv.org/abs/2508.12260 False False 2508.12434 Estimating wolf population size in France using non-invasive genetic sampling and spatial capture recapture models 2025-08-17 q-bio.PE q-bio.PE https://arxiv.org/abs/2508.12434 False False 2508.12260 Mantis: A Foundation Model for Mechanistic Disease Forecasting 2025-08-17 cs.AI;q-bio.QM q-bio.QM https://arxiv.org/abs/2508.12260 False False 2508.12260 Mantis: A Foundation Model for Mechanistic Disease Forecasting 2025-08-17 cs.AI;q-bio.QM q-bio.QM https://arxiv.org/abs/2508.12260 False False 2508.12297 A stochastic agent-based model for simulating tumor-immune dynamics and evaluating therapeutic strategies 2025-08-17 q-bio.QM;q-bio.TO q-bio.QM https://arxiv.org/abs/2508.12297 False False 2508.12297 A stochastic agent-based model for simulating tumor-immune dynamics and evaluating therapeutic strategies 2025-08-17 q-bio.QM;q-bio.TO q-bio.QM https://arxiv.org/abs/2508.12297 False False 2508.12025 Towards interpretable prediction of recurrence risk in breast cancer using pathology foundation models 2025-08-16 q-bio.TO q-bio.TO https://arxiv.org/abs/2508.12025 False False 2508.12027 Active inference for action-unaware agents 2025-08-16 cs.AI;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2508.12027 False False 2508.12133 Improving MSA Estimation through Adaptive Weight Vectors in MOEA/D 2025-08-16 cs.NE;q-bio.PE q-bio.PE https://arxiv.org/abs/2508.12133 False False 2508.13199 Neurosymbolic Learning for Predicting Cell Fate Decisions from Longitudinal Single Cell Transcriptomics in Paediatric Acute Myeloid Leukemia 2025-08-16 q-bio.QM q-bio.QM https://arxiv.org/abs/2508.13199 False False 2508.13207 Utilizing the RAIN method and Graph SAGE Model to Identify Effective Drug Combinations for Gastric Neoplasm Treatment 2025-08-16 cs.AI;q-bio.QM q-bio.QM https://arxiv.org/abs/2508.13207 False False 2508.13208 Modeling GRNs with a Probabilistic Categorical Framework 2025-08-16 cs.LG;math.CT;q-bio.MN q-bio.MN https://arxiv.org/abs/2508.13208 False False 2508.11974 Binomial maps: stochastically evolving iterated integer maps for finite populations 2025-08-16 physics.CD;q-bio.PE;stat.AP q-bio.PE https://arxiv.org/abs/2508.11974 False False 2508.13198 Complexity-Informed Causal Modeling of Neurodevelopmental Trajectories in Pediatric High-Grade Gliomas: Divergences from Neural Stem Cell Signatures 2025-08-16 q-bio.QM q-bio.QM https://arxiv.org/abs/2508.13198 False False 2508.12060 Applied causality to infer protein dynamics and kinetics 2025-08-16 physics.bio-ph;q-bio.BM q-bio.BM https://arxiv.org/abs/2508.12060 False False 2508.12029 BConformeR: A Conformer Based on Mutual Sampling for Unified Prediction of Continuous and Discontinuous Antibody Binding Sites 2025-08-16 cs.AI;cs.CE;cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2508.12029 False False 2508.13201 Benchmarking LLM-based Agents for Single-cell Omics Analysis 2025-08-16 cs.AI;cs.MA;q-bio.GN q-bio.GN https://arxiv.org/abs/2508.13201 False False 2508.13201 Benchmarking LLM-based agents for single-cell omics analysis 2025-08-16 cs.AI;cs.MA;q-bio.GN q-bio.GN https://arxiv.org/abs/2508.13201 False False 2508.11190 Quantum-Boosted High-Fidelity Deep Learning 2025-08-15 cs.AI;cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2508.11190 False False 2508.11221 The invariance and non-decreasing expectation of an evolutionary path characteristic under weak selection 2025-08-15 math.MP;physics.math-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2508.11221 False False 2508.11340 Cost-Effective Active Labeling for Data-Efficient Cervical Cell Classification 2025-08-15 cs.CV;q-bio.TO q-bio.TO https://arxiv.org/abs/2508.11340 False False 2508.11741 BaMANI: Bayesian Multi-Algorithm causal Network Inference 2025-08-15 cs.LG;q-bio.QM;stat.ML q-bio.QM https://arxiv.org/abs/2508.11741 False False 2508.11783 Multicellular control of gene networks 2025-08-15 q-bio.MN q-bio.MN https://arxiv.org/abs/2508.11783 False False 2508.13191 NucEL: Single-Nucleotide ELECTRA-Style Genomic Pre-training for Efficient and Interpretable Representations 2025-08-15 q-bio.GN q-bio.GN https://arxiv.org/abs/2508.13191 False False 2508.11312 Repetitive TMS-based Identification of Methamphetamine-Dependent Individuals Using EEG Spectra 2025-08-15 cs.LG;eess.SP;q-bio.NC q-bio.NC https://arxiv.org/abs/2508.11312 False False 2508.11422 Principles of Physiological Closed-Loop Controllers in Neuromodulation 2025-08-15 cs.SY;eess.SY;q-bio.NC q-bio.NC https://arxiv.org/abs/2508.11422 False False 2508.11518 Measurement of tissue viscosity to relate force and motion in collective cell migration 2025-08-15 physics.bio-ph;q-bio.CB q-bio.CB https://arxiv.org/abs/2508.11518 False False 2508.11724 BeeNet: Reconstructing Flower Shapes from Electric Fields using Deep Learning 2025-08-15 cs.CV;q-bio.QM q-bio.QM https://arxiv.org/abs/2508.11724 False False 2508.10343 Scalable Modeling of Nonlinear Network Dynamics in Neurodegenerative Disease 2025-08-14 q-bio.NC;q-bio.QM q-bio.NC https://arxiv.org/abs/2508.10343 False False 2508.10474 EDAPT: Towards Calibration-Free BCIs with Continual Online Adaptation 2025-08-14 cs.HC;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2508.10474 False False 2508.10586 Differential Physiological Responses to Proxemic and Facial Threats in Virtual Avatar Interactions 2025-08-14 cs.HC;eess.SP;q-bio.NC q-bio.NC https://arxiv.org/abs/2508.10586 False False 2508.10775 IBEX: Information-Bottleneck-EXplored Coarse-to-Fine Molecular Generation under Limited Data 2025-08-14 cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2508.10775 False False 2508.10784 Insights from the Algonauts 2025 Winners 2025-08-14 cs.CV;q-bio.NC q-bio.NC https://arxiv.org/abs/2508.10784 False False 2508.10541 Driving Accurate Allergen Prediction with Protein Language Models and Generalization-Focused Evaluation 2025-08-14 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2508.10541 False False 2508.10970 Holistic Bioprocess Development Across Scales Using Multi-Fidelity Batch Bayesian Optimization 2025-08-14 q-bio.QM;stat.ML q-bio.QM https://arxiv.org/abs/2508.10970 False False 2508.11036 Dissecting Microbial Community Structure and Heterogeneity via Multivariate Covariate-Adjusted Clustering 2025-08-14 q-bio.QM;stat.AP;stat.ME q-bio.QM https://arxiv.org/abs/2508.11036 False False 2508.20109 A Unified Theory of Language 2025-08-14 cs.CL;q-bio.NC q-bio.NC https://arxiv.org/abs/2508.20109 False False 2508.10262 HelixVS: Deep Learning-Enhanced Structure-Based Platform for Screening and Design 2025-08-14 q-bio.BM;q-bio.QM q-bio.BM https://arxiv.org/abs/2508.10262 False False 2508.11004 A Selective Review of Modern Stochastic Modeling: SDE/SPDE Numerics, Data-Driven Identification, and Generative Methods with Applications in Biomathematics 2025-08-14 math.DS;q-bio.QM q-bio.QM https://arxiv.org/abs/2508.11004 False False 2508.11039 Information Transmission and Processing in G-Protein-Coupled-Receptor Complexes 2025-08-14 q-bio.MN q-bio.MN https://arxiv.org/abs/2508.11039 False False 2508.10821 SimAQ: Mitigating Experimental Artifacts in Soft X-Ray Tomography using Simulated Acquisitions 2025-08-14 q-bio.QM q-bio.QM https://arxiv.org/abs/2508.10821 False False 2508.10760 FROGENT: An End-to-End Full-process Drug Design Multi-Agent System 2025-08-14 cs.AI;q-bio.BM q-bio.BM https://arxiv.org/abs/2508.10760 False False 2508.10821 SimAQ: Mitigating Experimental Artifacts in Soft X-Ray Tomography using Simulated Acquisitions 2025-08-14 q-bio.QM q-bio.QM https://arxiv.org/abs/2508.10821 False False 2508.10821 SimAQ: Mitigating Experimental Artifacts in Soft X-Ray Tomography using Simulated Acquisitions 2025-08-14 q-bio.QM q-bio.QM https://arxiv.org/abs/2508.10821 False False 2508.10586 Differential Physiological Responses to Proxemic and Facial Threats in Virtual Avatar Interactions 2025-08-14 cs.HC;eess.SP;q-bio.NC q-bio.NC https://arxiv.org/abs/2508.10586 False False 2508.10586 Differential Physiological Responses to Proxemic and Facial Threats in Virtual Avatar Interactions 2025-08-14 cs.HC;eess.SP;q-bio.NC q-bio.NC https://arxiv.org/abs/2508.10586 False False 2508.11036 Dissecting Microbial Community Structure and Heterogeneity via Multivariate Covariate-Adjusted Clustering 2025-08-14 q-bio.QM;stat.AP;stat.ME q-bio.QM https://arxiv.org/abs/2508.11036 False False 2508.11036 Dissecting Microbial Community Structure and Heterogeneity via Multivariate Covariate-Adjusted Clustering 2025-08-14 q-bio.QM;stat.AP;stat.ME q-bio.QM https://arxiv.org/abs/2508.11036 False False 2508.09406 CAKL: Commutative algebra k-mer learning of genomics 2025-08-13 math.AC;q-bio.QM q-bio.QM https://arxiv.org/abs/2508.09406 False False 2508.09618 Reinforcement learning in densely recurrent biological networks 2025-08-13 cs.NE;physics.AO;q-bio.NC q-bio.NC https://arxiv.org/abs/2508.09618 False False 2508.09722 Quest for a clinically relevant medical image segmentation metric: the definition and implementation of Medical Similarity Index 2025-08-13 q-bio.QM q-bio.QM https://arxiv.org/abs/2508.09722 False False 2508.09757 NEUBORN: The Neurodevelopmental Evolution framework Using BiOmechanical RemodelliNg 2025-08-13 cs.AI;q-bio.QM q-bio.QM https://arxiv.org/abs/2508.09757 False False 2508.09852 Perceptual Reality Transformer: Neural Architectures for Simulating Neurological Perception Conditions 2025-08-13 cs.AI;cs.CV;cs.NE;q-bio.NC q-bio.NC https://arxiv.org/abs/2508.09852 False False 2508.09659 Thermal Tracks: A Gaussian process-based framework for universal melting curve analysis enabling unconstrained hit identification in thermal proteome profiling experiments 2025-08-13 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2508.09659 False False 2508.09772 Low Complexity Elasticity Models for Cardiac Digital Twins 2025-08-13 q-bio.TO q-bio.TO https://arxiv.org/abs/2508.09772 False False 2508.10062 Excessive Screen Time is Associated with Mental Health Problems and ADHD in US Children and Adolescents: Physical Activity and Sleep as Parallel Mediators 2025-08-13 q-bio.NC q-bio.NC https://arxiv.org/abs/2508.10062 False False 2508.10082 Developing an Inhaled NEU1 Inhibitor for Cystic Fibrosis via Pharmacokinetic and Biophysical Modeling 2025-08-13 q-bio.QM q-bio.QM https://arxiv.org/abs/2508.10082 False False 2508.10114 Physical Principles of Size and Frequency Scaling of Active Cytoskeletal Spirals 2025-08-13 physics.bio-ph;physics.soft;q-bio.BM q-bio.BM https://arxiv.org/abs/2508.10114 False False 2508.10117 In silico study on the cytotoxicity against Hela cancer cells of xanthones bioactive compounds from Garcinia cowa: QSAR based on Graph Deep Learning, Network Pharmacology, and Molecular Docking 2025-08-13 cs.LG;q-bio.MN q-bio.MN https://arxiv.org/abs/2508.10117 False False 2508.10130 Linking GFAP Levels to Speech Anomalies in Acute Brain Injury: A Simulation Based Study 2025-08-13 q-bio.NC q-bio.NC https://arxiv.org/abs/2508.10130 False False 2508.21078 Phase-Field Modeling of Border Cell Cluster Migration in Drosophila 2025-08-13 physics.bio-ph;q-bio.CB q-bio.CB https://arxiv.org/abs/2508.21078 False False 2508.09926 Towards Comprehensive Cellular Characterisation of H&E slides 2025-08-13 cs.CV;q-bio.QM q-bio.QM https://arxiv.org/abs/2508.09926 False False 2508.10178 Estimating carbon pools in the shelf sea environment: reanalysis or model-informed machine learning? 2025-08-13 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2508.10178 False False 2508.10064 Dynamical Alignment: A Principle for Adaptive Neural Computation 2025-08-13 cs.LG;cs.NE;q-bio.NC q-bio.NC https://arxiv.org/abs/2508.10064 False False 2508.09871 Inference of germinal center evolutionary dynamics via simulation-based deep learning 2025-08-13 q-bio.PE q-bio.PE https://arxiv.org/abs/2508.09871 False False 2508.09772 Physics-Informed Symbolic Regression for Elasticity Modeling in Cardiac Digital Twins 2025-08-13 q-bio.TO q-bio.TO https://arxiv.org/abs/2508.09772 False False 2508.09772 Physics-Informed Symbolic Regression for Elasticity Modeling in Cardiac Digital Twins 2025-08-13 q-bio.TO q-bio.TO https://arxiv.org/abs/2508.09772 False False 2508.10062 Excessive Screen Time is Associated with Mental Health Problems and ADHD in US Children and Adolescents: Physical Activity and Sleep as Parallel Mediators 2025-08-13 q-bio.NC q-bio.NC https://arxiv.org/abs/2508.10062 False False 2508.10062 Excessive Screen Time is Associated with Mental Health Problems and ADHD in US Children and Adolescents: Physical Activity and Sleep as Parallel Mediators 2025-08-13 q-bio.NC q-bio.NC https://arxiv.org/abs/2508.10062 False False 2508.10178 Estimating carbon pools in the European Shelf sea environment: replacing reanalysis by model-informed machine learning? 2025-08-13 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2508.10178 False False 2508.10178 Estimating carbon pools in the European Shelf sea environment: replacing reanalysis by model-informed machine learning? 2025-08-13 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2508.10178 False False 2508.09926 Towards Comprehensive Cellular Characterisation of H&E slides 2025-08-13 cs.CV;q-bio.QM q-bio.QM https://arxiv.org/abs/2508.09926 False False 2508.09926 Towards Comprehensive Cellular Characterisation of H&E slides 2025-08-13 cs.CV;q-bio.QM q-bio.QM https://arxiv.org/abs/2508.09926 False False 2508.09406 CAKR: Commutative algebra k-mer representations for genomics 2025-08-13 math.AC;q-bio.QM q-bio.QM https://arxiv.org/abs/2508.09406 False False 2508.09406 CAKR: Commutative algebra k-mer representations for genomics 2025-08-13 math.AC;q-bio.QM q-bio.QM https://arxiv.org/abs/2508.09406 False False 2508.08569 Graph-based method for constructing consensus trees 2025-08-12 cs.DS;q-bio.PE q-bio.PE https://arxiv.org/abs/2508.08569 False False 2508.08587 Hierarchy Entropy Degeneration Explains the Rat Utopia Population Collapse: The Role of Full Visibility and Isolation 2025-08-12 cs.MA;q-bio.PE q-bio.PE https://arxiv.org/abs/2508.08587 False False 2508.08681 Multi-dimensional Neural Decoding with Orthogonal Representations for Brain-Computer Interfaces 2025-08-12 q-bio.NC q-bio.NC https://arxiv.org/abs/2508.08681 False False 2508.08714 Identifiability of linear stochastic state-space models with application to ecology 2025-08-12 q-bio.PE;stat.ME q-bio.PE https://arxiv.org/abs/2508.08714 False False 2508.08763 Quantifying the direct and indirect impact of COVID-19 vaccination: evidence from Victoria, Australia 2025-08-12 q-bio.PE;q-bio.QM q-bio.PE https://arxiv.org/abs/2508.08763 False False 2508.09038 A control theoretical approach to gene regulation raises quantitative constraints for dynamic homeostasis in stochastic gene expression 2025-08-12 physics.bio-ph;q-bio.MN;q-bio.QM q-bio.MN https://arxiv.org/abs/2508.09038 False False 2508.09242 Cross-BCI, A Cross-BCI-Paradigm Classifica-tion Model Towards Universal BCI Applications 2025-08-12 cs.AI;cs.HC;q-bio.QM q-bio.QM https://arxiv.org/abs/2508.09242 False False 2508.09300 Coupling between risk and cautious behavior affect epidemic morbidity, mortality and dynamics 2025-08-12 physics.soc-ph;q-bio.PE q-bio.PE https://arxiv.org/abs/2508.09300 False False 2508.09373 Predictive Significance of CD276/B7-H3 Expression in Baseline Biopsies of Advanced Prostate Carcinoma 2025-08-12 q-bio.QM;stat.AP q-bio.QM https://arxiv.org/abs/2508.09373 False False 2508.10045 Unifying equivalences across unsupervised learning, network science, and imaging/network neuroscience 2025-08-12 q-bio.NC q-bio.NC https://arxiv.org/abs/2508.10045 False False 2508.10051 An Intelligent Infrastructure as a Foundation for Modern Science 2025-08-12 cs.ET;q-bio.NC q-bio.NC https://arxiv.org/abs/2508.10051 False False 2508.10057 Large Language Models Show Signs of Alignment with Human Neurocognition During Abstract Reasoning 2025-08-12 cs.AI;cs.CL;q-bio.NC q-bio.NC https://arxiv.org/abs/2508.10057 False False 2508.10058 A Structural Analysis of Population Graphs 2025-08-12 q-bio.QM q-bio.QM https://arxiv.org/abs/2508.10058 False False 2508.08922 Neural correlates of learned categorical perception of visual stimuli with local features 2025-08-12 q-bio.NC q-bio.NC https://arxiv.org/abs/2508.08922 False False 2508.21076 Pep2Prob Benchmark: Predicting Fragment Ion Probability for MS$^2$-based Proteomics 2025-08-12 cs.AI;cs.LG;q-bio.BM q-bio.BM https://arxiv.org/abs/2508.21076 False False 2508.08548 Emergence: from physics to biology, sociology, and computer science 2025-08-12 physics.hist-ph;physics.quant-ph;physics.stat-mech;q-bio.NC q-bio.NC https://arxiv.org/abs/2508.08548 False False 2508.09037 Drivers of periodicity in population dynamic models of long-lived, large mammals 2025-08-12 q-bio.PE q-bio.PE https://arxiv.org/abs/2508.09037 False False 2508.08548 Emergence: from physics to biology, sociology, and computer science 2025-08-12 physics.hist-ph;physics.quant-ph;physics.stat-mech;q-bio.NC q-bio.NC https://arxiv.org/abs/2508.08548 False False 2508.08548 Emergence: from physics to biology, sociology, and computer science 2025-08-12 physics.hist-ph;physics.quant-ph;physics.stat-mech;q-bio.NC q-bio.NC https://arxiv.org/abs/2508.08548 False False 2508.10051 An Intelligent Infrastructure as a Foundation for Modern Science 2025-08-12 cs.ET;q-bio.NC q-bio.NC https://arxiv.org/abs/2508.10051 False False 2508.10051 An Intelligent Infrastructure as a Foundation for Modern Science 2025-08-12 cs.ET;q-bio.NC q-bio.NC https://arxiv.org/abs/2508.10051 False False 2508.08714 Identifiability of linear stochastic state-space models with application to ecology 2025-08-12 q-bio.PE;stat.ME q-bio.PE https://arxiv.org/abs/2508.08714 False False 2508.08714 Identifiability of linear stochastic state-space models with application to ecology 2025-08-12 q-bio.PE;stat.ME q-bio.PE https://arxiv.org/abs/2508.08714 False False 2508.07568 Human Extinction A Demographic Perspective 2025-08-11 q-bio.PE;stat.AP q-bio.PE https://arxiv.org/abs/2508.07568 False False 2508.07594 Embedding Sustainability in Undergraduate Mathematics with Actionable Case Studies 2025-08-11 math.OC;q-bio.PE q-bio.PE https://arxiv.org/abs/2508.07594 False False 2508.07789 Modelling phenology using ordered categorical generalized additive models 2025-08-11 q-bio.QM;stat.ME q-bio.QM https://arxiv.org/abs/2508.07789 False False 2508.08014 ShortCake: An integrated platform for efficient and reproducible single-cell analysis 2025-08-11 q-bio.GN q-bio.GN https://arxiv.org/abs/2508.08014 False False 2508.08109 Probing the Dark Energy in the Functional Protein Universe 2025-08-11 q-bio.BM q-bio.BM https://arxiv.org/abs/2508.08109 False False 2508.08351 An Interactive Platform for Unified Assessment of Drug-Drug Interactions Using Descriptive and Pharmacokinetic Data 2025-08-11 q-bio.QM q-bio.QM https://arxiv.org/abs/2508.08351 False False 2508.09212 Deep Generative Models for Discrete Genotype Simulation 2025-08-11 cs.AI;cs.LG;q-bio.GN q-bio.GN https://arxiv.org/abs/2508.09212 False False 2508.09215 Real-time deep learning phase imaging flow cytometer reveals blood cell aggregate biomarkers for haematology diagnostics 2025-08-11 cs.AI;cs.CV;cs.LG;eess.IV;q-bio.QM q-bio.QM https://arxiv.org/abs/2508.09215 False False 2508.09217 Exploring Molecular Odor Taxonomies for Structure-based Odor Predictions using Machine Learning 2025-08-11 cs.LG;q-bio.QM q-bio.QM https://arxiv.org/abs/2508.09217 False False 2508.10929 Allee Synaptic Plasticity and Memory 2025-08-11 cs.NE;math.DS;q-bio.NC q-bio.NC https://arxiv.org/abs/2508.10929 False False 2508.11689 Adaptive Spiking with Plasticity for Energy Aware Neuromorphic Systems 2025-08-11 cs.AI;cs.NE;q-bio.NC q-bio.NC https://arxiv.org/abs/2508.11689 False False 2508.07915 Adding structure to generalized additive models, with applications in ecology 2025-08-11 q-bio.QM;stat.ME q-bio.QM https://arxiv.org/abs/2508.07915 False False 2508.08435 Fast weight programming and linear transformers: from machine learning to neurobiology 2025-08-11 cs.AI;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2508.08435 False False 2508.08405 Field-theoretic approach to compartmental neuronal networks: impact of dendritic calcium spike-dependent bursting 2025-08-11 q-bio.NC q-bio.NC https://arxiv.org/abs/2508.08405 False False 2508.08200 Pangenome-guided sequence assembly via binary optimisation 2025-08-11 physics.quant-ph;q-bio.QM q-bio.QM https://arxiv.org/abs/2508.08200 False False 2508.08435 Fast weight programming and linear transformers: from machine learning to neurobiology 2025-08-11 cs.AI;cs.LG;q-bio.NC q-bio.NC https://arxiv.org/abs/2508.08435 False False